Citrus Sinensis ID: 006616

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
Protein Sequence
MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccccEEEEEEcccccccccEEEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHHHHHHccccccccccccccccccEEccccEEEEccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEccEEEEEEccccccccccccccccccccccccccccccEEccccccccccccccccEEEccEEEEEcccccHcHccccEEEEccccccEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHcccHHHHHHccccccccccccHHHHccccHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccHHHccccccccccccccccHHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDresrwasngsngspngdgiqAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLskrssnlrgdwKRRFFVLDSRGMLYYYRkqcskssgsgsqlssqrnssELGSGLLSRWLsshyhggvhdeksaARHTVNLLTSTikvdadqsdlrfcfriisptknytlqaESALDQMDWIEKITGVIASLlssqaperclptspmgsghhrsasdsssfessdfdHAAVEEYTsernltsayherqsrgsqqqrscvksekpidVLRRvcgndrcadcgapepdwaslnLGVLVCIECsgvhrnlgvHISKVRSLtldvkvwePSVITLFQSLGNAFANSVWEELLQSRsafhvdltppslhksdkpqlllmgkpshsdsisVKEKFIHAKYAEKLfvrkpkdnqylHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEqtslerssssltgnssdrsssgslnlagtsegqtmddlegctllHLACDSADIGMLELLLQYGaninatdsrgltplhRCILRGKAMFAKLLLtrgadpravnregkTSLELAVESNFADSEVLAILSDSHG
Flexible Loop (DISEMBL)
MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESrwasngsngspngdGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGylskrssnlrgdwkrRFFVLDSRGMLYYYRKQCskssgsgsqlssQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTStikvdadqsdLRFCFRiisptknytLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYherqsrgsqqqrscvksekpidVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLfvrkpkdnqYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSlerssssltgnssdrsssgslNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLtrgadpravnrEGKTSlelavesnfadseVLAILSDSHG
Low Complexity Region (SEG)
MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWAsngsngspngDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCskssgsgsqlssqrnsselgsgllsrwlssHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMgsghhrsasdsssfessdfdhaaVEEYTSERNLTSAYHErqsrgsqqqrsCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQtslerssssltgnssdrsssgslnlAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG
Disordered region (IsUnstruct)
****LRYFKQGYELLHQMEPYINQVLTYA**********************************************************************IRQGYL*****NLRGDWKRRFFVLDSRGMLYYYRK************************LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLL***********************************************************************IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVD***************************VKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLL***************************************LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA***********************************
Disordered Region (DISOPRED)
MDAHLRYFKQGYELLHQMEPYINQVLT********************************************************************************R******DWKRRFFVLDSRGMLYY**************************GLLSRWLS**********************************************************************************************************************************************PIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQ********************************SISVKEKFIHAKYAEKLFV*******************VRTNDK************************************************************************DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSD***
Disordered Region (DISEMBL)
MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ*********************SGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLP**********************FDHAAVEEYTSERNLTS*******************EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQ**********************LNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG
Disordered Region (DISPRO)
MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRE**************************************KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC**********SSQRNS**LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS****************************************************************KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQS*****************************SDSISVKEKFIHAKYAEKLFVRKPKD*QYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVY**************************SSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSxxxxxxxxxxxxxxxxxxxxxIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	638	2.2.26 [Sep-21-2011]
Q5W7F2	827	ADP-ribosylation factor G	yes	no	0.979	0.755	0.757	0.0
Q9FIT8	828	ADP-ribosylation factor G	no	no	0.984	0.758	0.640	0.0
Q9C6C3	776	ADP-ribosylation factor G	no	no	0.890	0.731	0.425	1e-123
Q9SMX5	775	ADP-ribosylation factor G	no	no	0.898	0.739	0.417	1e-122
Q5FVC7	770	Arf-GAP with coiled-coil,	yes	no	0.780	0.646	0.268	6e-45
Q6ZQK5	770	Arf-GAP with coiled-coil,	yes	no	0.780	0.646	0.267	9e-45
Q6IVG4	778	Arf-GAP with coiled-coil,	yes	no	0.780	0.640	0.264	6e-43
Q15057	778	Arf-GAP with coiled-coil,	yes	no	0.780	0.640	0.262	2e-42
A5PK26	745	Arf-GAP with coiled-coil,	no	no	0.764	0.655	0.251	2e-38
Q15027	740	Arf-GAP with coiled-coil,	no	no	0.670	0.578	0.273	1e-37

>sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/640 (75%), Positives = 541/640 (84%), Gaps = 15/640 (2%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNE+MQEYKRQ+DRESRW
Sbjct: 195 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNEKMQEYKRQVDRESRW 254

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
            SNGSNGSPNGDGIQAIGRSSHKMI+AVMQSAA+GKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 255 GSNGSNGSPNGDGIQAIGRSSHKMIDAVMQSAARGKVQTIRQGYLSKRSSNLRGDWKRRF 314

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSS--HYHGGVHDEKSA 178
           FVLDSRGMLYYYRKQCSK SGSGSQLS QRNSSELGSGLLSRWLSS  H HGGVHDEKS 
Sbjct: 315 FVLDSRGMLYYYRKQCSKPSGSGSQLSGQRNSSELGSGLLSRWLSSNNHGHGGVHDEKSV 374

Query: 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 238
           ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS
Sbjct: 375 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 434

Query: 239 SQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQ 298
           SQ PE+ LP SPMGSGHHRSAS+SSS+ESS++DH   EE+  ER+    Y+ER SR  Q 
Sbjct: 435 SQVPEQRLPGSPMGSGHHRSASESSSYESSEYDHPTTEEFVCERSFL-GYNERPSRSFQP 493

Query: 299 QRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 358
           QRS  K EKPID LR+VCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV
Sbjct: 494 QRSIRKGEKPIDALRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 553

Query: 359 RSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLM 418
           RSLTLDVKVWEPSVI+LFQ+LGN FAN+VWEELL SRSA H D   P L  SDK ++++ 
Sbjct: 554 RSLTLDVKVWEPSVISLFQALGNTFANTVWEELLHSRSAIHFD---PGLTVSDKSRVMVT 610

Query: 419 GKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVN 478
           GKPS++D IS+KEK+I AKYAEKLFVR+ +D+ +  S A Q+W+ V  NDKKAVYR IVN
Sbjct: 611 GKPSYADMISIKEKYIQAKYAEKLFVRRSRDSDFPQSAAQQMWDAVSGNDKKAVYRLIVN 670

Query: 479 FEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG 538
            + DVN VY+Q S  SSLTL++ +L+ E+   E     L     DR+ S S N++    G
Sbjct: 671 GDADVNYVYDQTS-SSSLTLSRVILVPERPKREDVLLRLRNELLDRTGSSS-NISPEGSG 728

Query: 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
                  G +LLH AC+ AD+GM+ELLLQYGAN+NA+DS G TPLH C+LRGK   A+LL
Sbjct: 729 -------GSSLLHCACEKADLGMVELLLQYGANVNASDSSGQTPLHCCLLRGKVTIARLL 781

Query: 599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           LTRGADP A+NREGKT+L++A ESNF D EVLA+LSD++G
Sbjct: 782 LTRGADPEAMNREGKTALDIAAESNFTDPEVLALLSDTNG 821

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Involved in the spatial control of provascular differentiation. Required for the formation of the normal pattern of continuous secondary veins. Involved in auxin signaling but not in polar auxin transport or in auxin responses. Required for PIN1 internalization in roots.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIT8|AGD1_ARATH ADP-ribosylation factor GTPase-activating protein AGD1 OS=Arabidopsis thaliana GN=AGD1 PE=2 SV=2

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/640 (64%), Positives = 479/640 (74%), Gaps = 12/640 (1%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLR+FKQGYELLHQMEP+INQVL YA QSRE +NYE A+LNERMQEY+RQ+DRE+R 
Sbjct: 195 MDAHLRFFKQGYELLHQMEPFINQVLAYAHQSRECANYEMASLNERMQEYQRQVDRETR- 253

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
               S  SP GDG++   R+S K+IEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 254 ---NSCVSPTGDGMRHNSRNSQKVIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 310

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN-SSELGSGLLSRWLSSHYHGGVHDEKSAA 179
           F+LDSRGMLYYYRK  + SSG+GS+    RN +SE   GLLSRWLSSHYHGGVHDEK  A
Sbjct: 311 FILDSRGMLYYYRKPWNWSSGNGSRSVVHRNMASENSPGLLSRWLSSHYHGGVHDEKPVA 370

Query: 180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 239
           RHTVNLLTSTIKVDADQ+DLRFCFRIISPTK YTLQAE+A DQMDWIEKITGVIASLLS 
Sbjct: 371 RHTVNLLTSTIKVDADQTDLRFCFRIISPTKVYTLQAENAQDQMDWIEKITGVIASLLSF 430

Query: 240 QAPERC-LPTSPMGSGHHRSASDSSSF-ESSDFDHAAVEEYTSERNLTSAYHERQSRGSQ 297
           Q PER  +  S +  G   SASDS S  +  D + A   E T E  +T     R S G  
Sbjct: 431 QTPERAIMRLSTVDGGDTFSASDSGSLADPYDIEQAESGESTVEHPMTGGNRSRFS-GCL 489

Query: 298 QQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISK 357
           QQ   VK+EKPIDVL RV GN+RCADCGAPEPDWASLNLGVL+CIECSG+HRNLGVHISK
Sbjct: 490 QQHDMVKTEKPIDVLTRVLGNERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISK 549

Query: 358 VRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLL 417
           VRSLTLDVKVWEPSV+TLFQSLGN + NSVWEELL S S            KSD+P+ LL
Sbjct: 550 VRSLTLDVKVWEPSVLTLFQSLGNVYVNSVWEELLNSESRTSSASRSSGTPKSDRPRKLL 609

Query: 418 MGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIV 477
           + KP  +D ISVKE FIHAKY+E++FVRK  D+Q+  +V  +IWE VR NDKK+VYRHIV
Sbjct: 610 VRKPGFNDPISVKELFIHAKYSERIFVRKAIDSQHFQAVFQEIWENVRANDKKSVYRHIV 669

Query: 478 NFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE 537
             E DVNA+  Q S   SL L+K M + E  +LE    S+     + + +G  N  G  E
Sbjct: 670 CSEADVNALRGQASYTVSLPLSKMMQMEE--TLEAKFKSIEEEFQE-NPAGYSNSRGDGE 726

Query: 538 GQTMDDLEG-CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK 596
               ++    C+LLHLAC SADIGM+ELLLQYGA INATDS+G TPLH CI+  +   A+
Sbjct: 727 SMVREETSNDCSLLHLACLSADIGMVELLLQYGAKINATDSKGRTPLHHCIISRRYAIAR 786

Query: 597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 636
           LLL RG DP AV+++    ++ A +++  DSE++A+L+DS
Sbjct: 787 LLLMRGGDPNAVDKDSNIPVKYASQTDLNDSELIALLTDS 826

Probable GTPase-activating protein (By similarity). Regulator of membrane trafficking. Required for maintaining a straight growth of root hairs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6C3|AGD2_ARATH ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana GN=AGD2 PE=2 SV=1

 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 275/646 (42%), Positives = 375/646 (58%), Gaps = 78/646 (12%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MD+H +YFK GY+LL Q+EPYI+QVLTYAQQS+E+S  EQ    +R+QE++ Q + +S+ 
Sbjct: 196 MDSHFKYFKLGYDLLSQLEPYIHQVLTYAQQSKEQSKIEQDRFAQRIQEFRTQSELDSQQ 255

Query: 61  ASNGSNGSPNGDG--IQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKR 118
           AS  ++ S  G     +AI R   K +EA   S A  +V   +QGYL KRS++LR DWKR
Sbjct: 256 ASAKADPSDVGGNHVYRAIPR---KNVEANSVSTADKEV--TKQGYLLKRSASLRADWKR 310

Query: 119 RFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELG---SGLLSRWLSSHYHGGVHDE 175
           RFFVLD+ G LYYYR   +KS+       SQ   S LG   SG+  R+ + H       +
Sbjct: 311 RFFVLDNHGSLYYYRNTGNKSA------KSQHYYSGLGEHSSGVFGRFRTRHNRSA--SQ 362

Query: 176 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 235
            S   + ++L TS IK+DA+ +DLR CFRIISP K YTLQAE+  D+MDW+ KIT  I  
Sbjct: 363 GSLDCNMIDLRTSLIKLDAEDTDLRLCFRIISPQKTYTLQAENGADRMDWVNKITAAITI 422

Query: 236 LLSS----QAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHER 291
            L+S    Q+P R L      SG                   A E  T   N    Y++R
Sbjct: 423 RLNSHFLQQSPARYLDKKNTSSG------------------PATENLT--LNQKEDYNQR 462

Query: 292 QSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNL 351
            + G          +  + +LR + GN+ CA+C AP+PDWASLNLGVL+CIECSGVHRNL
Sbjct: 463 LNVG----------DDVLTILREIPGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNL 512

Query: 352 GVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSD 411
           GVHISKVRSLTLDVKVWEP+++ LF++LGN + NSVWEELL      H+D       K  
Sbjct: 513 GVHISKVRSLTLDVKVWEPTILDLFRNLGNGYCNSVWEELLH-----HLD---DDSEKGS 564

Query: 412 KPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVA-HQIWEGVRTNDKK 470
              L  + KPS  D  ++KEK+I+ KY EK  V   KD +  +S A  +IWE V++ + +
Sbjct: 565 TDTLASVSKPSSEDWFTLKEKYINGKYLEKALV--VKDEREANSTASSRIWEAVQSRNIR 622

Query: 471 AVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSL 530
            +YR IV  + D N +  +   I+ L +     ++    +++       N+  R      
Sbjct: 623 DIYRLIV--KADANIINTKFDDITDLDVYHHHHVDAPDEVKKRHDP---NACQR------ 671

Query: 531 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 590
            +  ++E +    L+GC+LLH+AC S D  +LELLLQ+GA+IN  D  G TPLH CI  G
Sbjct: 672 -IKNSNEARNC--LQGCSLLHVACQSGDPILLELLLQFGADINMRDYHGRTPLHHCIASG 728

Query: 591 KAMFAKLLLTRGADPRAVNREGKTSLELAVESN-FADSEVLAILSD 635
              FAK+LL RGA P   +  G + LE A+E     D E+  +L++
Sbjct: 729 NNAFAKVLLRRGARPSIEDGGGLSVLERAMEMGAITDEELFLLLAE 774

Probable GTPase-activating protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMX5|AGD4_ARATH ADP-ribosylation factor GTPase-activating protein AGD4 OS=Arabidopsis thaliana GN=AGD4 PE=2 SV=2

 Score =  440 bits (1132), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 267/640 (41%), Positives = 364/640 (56%), Gaps = 67/640 (10%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESR- 59
           MDAHLRYFK GY+LL+Q+EP+I+Q+LTYAQQS+E+S  EQ  L  R+QE++ Q + +S+ 
Sbjct: 196 MDAHLRYFKLGYDLLNQLEPFIHQILTYAQQSKEQSKIEQDRLARRIQEFRTQSELDSQQ 255

Query: 60  WASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRR 119
             +N  +   NG+ +   G   +K  E  + +      + I+QGYL KRSS+LR DWKR+
Sbjct: 256 LVANAESSGANGNRVG--GNIPYKNTETSLTADK----EVIKQGYLLKRSSSLRTDWKRK 309

Query: 120 FFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA 179
           FFVLDS G +YYYR   +KS GS    S    SS+  +G+  R+ + H   G   E S  
Sbjct: 310 FFVLDSHGSMYYYRTNGNKSMGSHHHYSG---SSDHNTGVFGRFRARHNRSGSLTEGSLG 366

Query: 180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 239
            +T++L TS IK+DA+  DLR CFRIISP K YTLQAE+  D+MDW+ KIT  I +LL+S
Sbjct: 367 YNTIDLRTSLIKLDAEDMDLRLCFRIISPQKTYTLQAENGADRMDWVNKITKAIGTLLNS 426

Query: 240 QAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQ 299
                 L  SP+                          Y  + N +SA       G Q +
Sbjct: 427 HF----LQQSPV-------------------------RYLDKDNSSSAPANAVVSGDQIR 457

Query: 300 RSCVKSEKPIDV---LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHIS 356
            +  +     DV   LR + GN+ CA+C APEPDWASLNLGVL+CI+CSGVHRNLGVHIS
Sbjct: 458 HNDSRQNIGDDVSTILRGLPGNNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHIS 517

Query: 357 KVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLL 416
           KVRSL+LDVKVWEP+++ LF++LGN + NS+WE LL      H+D               
Sbjct: 518 KVRSLSLDVKVWEPTILDLFRNLGNVYCNSLWEGLL------HLD---DDCEDGSALSHA 568

Query: 417 LMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHI 476
            + KP   DS SVKEK+I  KY EK  V K +    L S A +IWE V++ + + +YR I
Sbjct: 569 SVSKPCPEDSFSVKEKYILGKYLEKALVIKDESEANL-SAASRIWEAVQSRNIREIYRLI 627

Query: 477 VNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS 536
           V    DVN +  +   I+ +     +   E+   +R   ++     + +   S       
Sbjct: 628 VT-TGDVNIINTKFDDITDIDAYHHIDAAEKAVKKRHDPTVCQRIKESNEPRSC------ 680

Query: 537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK 596
                  L+GC+LLH+AC   D  +LELLLQ+GA++N  D  G TPLH CI  G   FAK
Sbjct: 681 -------LQGCSLLHVACHIGDSVLLELLLQFGADLNIRDYHGRTPLHHCISSGNHKFAK 733

Query: 597 LLLTRGADPRAVNREGKTSLELAVESN-FADSEVLAILSD 635
           +LL RGA P   +  G + LE A+E     D E+  +L++
Sbjct: 734 ILLRRGARPSIEDDGGLSVLERAMEMGAITDEELFLLLAE 773

Probable GTPase-activating protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5FVC7|ACAP2_RAT Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Acap2 PE=2 SV=1

 Score =  182 bits (462), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 177/658 (26%), Positives = 264/658 (40%), Gaps = 160/658 (24%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           M AHL +F QGY+L  ++ PY+  +   AQ  R   +   AA  +R  E K    ++  +
Sbjct: 196 MYAHLAFFHQGYDLFSELGPYMKDL--GAQLDRLVVD---AAKEKREMEQKHSTIQQKDF 250

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           +S+ S    N D    I                      + +GYL KR+SN    W RR+
Sbjct: 251 SSDDSKLEYNVDAANGI----------------------VMEGYLFKRASNAFKTWNRRW 288

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           F + +  ++                                      Y     D  +   
Sbjct: 289 FSIQNNQLV--------------------------------------YQKKFKDSPTVVV 310

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
             + L T     D ++   RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +
Sbjct: 311 EDLRLCTVKHCEDIER---RFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREK 367

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
             E             +S+  + S +S                           GS+ + 
Sbjct: 368 GDES-------EKLDKKSSPSTGSLDS---------------------------GSESKE 393

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
             +K E  +  ++ + GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRS
Sbjct: 394 KLLKGESALQRVQCIPGNTSCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRS 453

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLD   WEP ++ L   LGN   N V+E  L+                  KPQ      
Sbjct: 454 LTLD--TWEPELLKLMCELGNDVINRVYEAKLEKMGV-------------KKPQ------ 492

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRK------PK-----------DNQYLHSVAHQIWEG 463
           P        KE +I AKY E+ FV K      P            ++Q L      +   
Sbjct: 493 PGQRQE---KEAYIRAKYVERKFVDKYSTLLSPSEQEKRIISKSCEDQRLSHTRVSVHTP 549

Query: 464 VRTNDKKAVY-----RHIVNFEVDVNAVYE-QVSCISSLTLAKAMLLNEQTSLERSS--S 515
           V++ND          R  +   V  N++YE +     S     +  LN    L R+S   
Sbjct: 550 VKSNDSGIQQCSDDGRESLPSTVSANSLYEPEGERQESSVFLDSKHLNPGLQLYRASYEK 609

Query: 516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINAT 575
           +L   +   +    +N A + E Q        T L  A     +   E LLQ GAN+N  
Sbjct: 610 NLPKMAEALAHGADVNWANSDENQA-------TPLIQAVLGGSLVTCEFLLQNGANVNQR 662

Query: 576 DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           D +G  PLH   + G      L L RGA+  A + EGK  L +AVE+  A+++++ +L
Sbjct: 663 DVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEA--ANADIVTLL 718

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).

Rattus norvegicus (taxid: 10116)

>sp|Q6ZQK5|ACAP2_MOUSE Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Acap2 PE=1 SV=2

 Score =  182 bits (461), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 176/658 (26%), Positives = 264/658 (40%), Gaps = 160/658 (24%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           M AHL +F QGY+L  ++ PY+  +   AQ  R   +   AA  +R  E K    ++  +
Sbjct: 196 MYAHLAFFHQGYDLFSELGPYMKDL--GAQLDRLVVD---AAKEKREMEQKHSTIQQKDF 250

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           +S+ S    N D    I                      + +GYL KR+SN    W RR+
Sbjct: 251 SSDDSKLEYNVDAANGI----------------------VMEGYLFKRASNAFKTWNRRW 288

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           F + +  ++                                      Y     D  +   
Sbjct: 289 FSIQNNQLV--------------------------------------YQKKFKDSPTVVV 310

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
             + L T     D ++   RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +
Sbjct: 311 EDLRLCTVKHCEDIER---RFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREK 367

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
             E             +S+  + S +S                           G++ + 
Sbjct: 368 GDES-------EKLDKKSSPSTGSLDS---------------------------GNESKE 393

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
             +K E  +  ++ + GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRS
Sbjct: 394 KLLKGESALQRVQCIPGNTSCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRS 453

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLD   WEP ++ L   LGN   N V+E  L+                  KPQ      
Sbjct: 454 LTLD--TWEPELLKLMCELGNDVINRVYEAKLEKMGV-------------KKPQ------ 492

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRK------PK-----------DNQYLHSVAHQIWEG 463
           P        KE +I AKY E+ FV K      P            ++Q L      +   
Sbjct: 493 PGQRQE---KEAYIRAKYVERKFVDKYSALLSPSEQEKRIISKSCEDQRLSHARASVHTP 549

Query: 464 VRTNDKKAVY-----RHIVNFEVDVNAVYE-QVSCISSLTLAKAMLLNEQTSLERSS--S 515
           V++ND          R  +   V  N++YE +     S     +  LN    L R+S   
Sbjct: 550 VKSNDSGIQQCSEDGRESLPSTVSANSLYEPEGERQESSVFLDSKHLNPGLQLYRASYEK 609

Query: 516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINAT 575
           +L   +   +    +N A + E Q        T L  A     +   E LLQ GAN+N  
Sbjct: 610 NLPKMAEALAHGADVNWANSDENQA-------TPLIQAVLGGSLVTCEFLLQNGANVNQR 662

Query: 576 DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           D +G  PLH   + G      L L RGA+  A + EGK  L +AVE+  A+++++ +L
Sbjct: 663 DVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEA--ANADIVTLL 718

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).

Mus musculus (taxid: 10090)

>sp|Q6IVG4|ACAP2_RABIT Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Oryctolagus cuniculus GN=ACAP2 PE=2 SV=1

 Score =  176 bits (445), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 176/666 (26%), Positives = 265/666 (39%), Gaps = 168/666 (25%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           M AHL +F QGY+L  ++ PY+  +   AQ  R   +   AA  +R  E K    ++  +
Sbjct: 196 MYAHLAFFHQGYDLFSELGPYMKDL--GAQLDRLVVD---AAKEKREMEQKHSTIQQKDF 250

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           +S+ S    N D    I                      + +GYL KR+SN    W RR+
Sbjct: 251 SSDDSKLEYNVDAANGI----------------------VMEGYLFKRASNAFKTWNRRW 288

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           F + +  ++                                      Y     D  +   
Sbjct: 289 FSIQNNQLV--------------------------------------YQKKFKDNPTVVV 310

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
             + L T     D ++   RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +
Sbjct: 311 EDLRLCTVKHCEDIER---RFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREK 367

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
             E             +S+  + S +S                           G++ + 
Sbjct: 368 GDES-------EKLDKKSSPSTGSLDS---------------------------GNESKE 393

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
             +K E  +  ++ V GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRS
Sbjct: 394 KLLKGESALQRVQCVPGNASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRS 453

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLD   WEP ++ L   LGN   N V+E  ++                  KPQ      
Sbjct: 454 LTLDT--WEPELLKLMCELGNDVINRVYEANVEKMGI-------------KKPQ------ 492

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRK-------PKDNQYLHS------------------ 455
           P        KE +I AKY E+ FV K       P+  + + S                  
Sbjct: 493 PGQRQE---KEAYIKAKYVERKFVDKYSVSSSPPEQEKKVVSKDSEEKRLSIPKLGPGDQ 549

Query: 456 VAHQIWEGVRTNDKKAVY-----RHIVNFEVDVNAVYE-QVSCISSLTLAKAMLLNEQTS 509
           V   I   V++ND          R  +   V  N++YE +     S     +  LN    
Sbjct: 550 VRTSIQSSVKSNDSGIQQSSDDGRESLPSTVSANSLYEPEGERQDSSVFLDSKHLNPGLQ 609

Query: 510 LERSS--SSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQ 567
           L R+S   +L   +   +    +N A + E +        T L  A     +   E LLQ
Sbjct: 610 LYRASYEKNLPKMAEALAHGADVNWANSEENKA-------TPLIQAVLGGSLVTCEFLLQ 662

Query: 568 YGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS 627
            GAN+N  D +G  PLH   + G      L L RGA+  A + EGK  L +AVE+  A++
Sbjct: 663 NGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEA--ANA 720

Query: 628 EVLAIL 633
           +++ +L
Sbjct: 721 DIVTLL 726

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).

Oryctolagus cuniculus (taxid: 9986)

>sp|Q15057|ACAP2_HUMAN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3

 Score =  174 bits (441), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 175/666 (26%), Positives = 263/666 (39%), Gaps = 168/666 (25%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           M AHL +F QGY+L  ++ PY+  +   AQ  R   +   AA  +R  E K    ++  +
Sbjct: 196 MYAHLAFFHQGYDLFSELGPYMKDL--GAQLDRLVVD---AAKEKREMEQKHSTIQQKDF 250

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           +S+ S    N D    I                      + +GYL KR+SN    W RR+
Sbjct: 251 SSDDSKLEYNVDAANGI----------------------VMEGYLFKRASNAFKTWNRRW 288

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           F + +  ++                                      Y     D  +   
Sbjct: 289 FSIQNNQLV--------------------------------------YQKKFKDNPTVVV 310

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
             + L T     D ++   RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +
Sbjct: 311 EDLRLCTVKHCEDIER---RFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREK 367

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
             E             +S+  + S +S                           G++ + 
Sbjct: 368 GDES-------EKLDKKSSPSTGSLDS---------------------------GNESKE 393

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
             +K E  +  ++ + GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRS
Sbjct: 394 KLLKGESALQRVQCIPGNASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRS 453

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLD   WEP ++ L   LGN   N V+E  ++                  KPQ      
Sbjct: 454 LTLDT--WEPELLKLMCELGNDVINRVYEANVEKMGI-------------KKPQ------ 492

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRK-------PKDNQYLHS------------------ 455
           P        KE +I AKY E+ FV K       P+  +   S                  
Sbjct: 493 PGQRQE---KEAYIRAKYVERKFVDKYSISLSPPEQQKKFVSKSSEEKRLSISKFGPGDQ 549

Query: 456 VAHQIWEGVRTNDKKAVY-----RHIVNFEVDVNAVYE-QVSCISSLTLAKAMLLNEQTS 509
           V       VR+ND          R  +   V  N++YE +     S     +  LN    
Sbjct: 550 VRASAQSSVRSNDSGIQQSSDDGRESLPSTVSANSLYEPEGERQDSSMFLDSKHLNPGLQ 609

Query: 510 LERSS--SSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQ 567
           L R+S   +L   +   +    +N A + E +        T L  A     +   E LLQ
Sbjct: 610 LYRASYEKNLPKMAEALAHGADVNWANSEENKA-------TPLIQAVLGGSLVTCEFLLQ 662

Query: 568 YGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS 627
            GAN+N  D +G  PLH   + G      L L RGA+  A + EGK  L +AVE+  A++
Sbjct: 663 NGANVNQRDVQGRGPLHHATVLGHTGQVCLFLKRGANQHATDEEGKDPLSIAVEA--ANA 720

Query: 628 EVLAIL 633
           +++ +L
Sbjct: 721 DIVTLL 726

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6).

Homo sapiens (taxid: 9606)

>sp|A5PK26|ACAP1_BOVIN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Bos taurus GN=ACAP1 PE=2 SV=1

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 164/651 (25%), Positives = 253/651 (38%), Gaps = 163/651 (25%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQ-----SRERSNYEQAALNERMQEYKRQID 55
           ++A   +F+QG+E L Q+  Y  ++     Q     +RE+ + EQ  +  + +E      
Sbjct: 196 VEAQATHFQQGHEELSQLAQYRKELGGQLHQLVLNSAREKRDMEQRHVLLKQKEL----- 250

Query: 56  RESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGD 115
                   G    P                     S  +G    + +G+L KR+SN    
Sbjct: 251 -------GGEEPEP---------------------SLKEGPGGLVMEGHLFKRASNAFKT 282

Query: 116 WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE 175
           W RR+F + S  ++Y  R +                                      D 
Sbjct: 283 WSRRWFTIQSNQLVYQKRYK--------------------------------------DP 304

Query: 176 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS 235
            +     + L T  +  D+++   RFCF ++SP+K+  LQ++S      W+  +   IA+
Sbjct: 305 VTVVVDDLRLCTVKLCPDSER---RFCFEVVSPSKSCLLQSDSERLMQLWVSAVQSSIAT 361

Query: 236 LLSSQAPERCLPTSPMGSGH---HRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQ 292
             S       L  SP G G    H + S +++                          R+
Sbjct: 362 AFSQAR----LDDSPRGLGQGSGHLAISSAATLGPGGLTRG-----------------RE 400

Query: 293 SRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLG 352
             G     + V+S         V GN +C DC  P P+WAS+NLGV +CI+CSG+HR+LG
Sbjct: 401 PGGVGHVAAQVQS---------VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLG 451

Query: 353 VHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDK 412
           VH SKVRSLTLD   WEP ++ L   LGN   N ++E  +++                  
Sbjct: 452 VHFSKVRSLTLD--SWEPELVKLMCELGNVVINQIYEARVEA------------------ 491

Query: 413 PQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAV 472
              + + KP  S S   KE +IHAKY EK F+ K  + +                 K  +
Sbjct: 492 ---MAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGPPRGHPPVPPKPGL 548

Query: 473 YR-HIVNFEVDVNAVYEQVSCISSLTLAKAMLL---NEQTSLERSSSSLT-GNSSDRSSS 527
            R    +F        E +  +       A+L        SL   + +L  G   +  + 
Sbjct: 549 IRPKPGSFRSKPEPPSEDLQSLHP----GALLFRAAGHPPSLPTMADALAHGADVNWVNG 604

Query: 528 GSLN----LAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPL 583
           G  N    +  T+  + ++ L  C  L               LQ GAN+N  D++G  PL
Sbjct: 605 GQENATPLIQATAAVRVLNSLLACEFL---------------LQNGANVNQVDNQGRGPL 649

Query: 584 HRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS 634
           H   + G    A L L RGAD    + EG+  L +AVE+  AD   L  L+
Sbjct: 650 HHATILGHTGLACLFLKRGADLGVRDSEGRDPLTIAVETANADIVTLLRLA 700

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6) required for clathrin-dependent export of proteins from recycling endosomes to trans-Golgi network and cell surface.

Bos taurus (taxid: 9913)

>sp|Q15027|ACAP1_HUMAN Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ACAP1 PE=1 SV=1

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 223/548 (40%), Gaps = 120/548 (21%)

Query: 94  KGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSS 153
           +G    + +G+L KR+SN    W RR+F + S                  +QL  Q+   
Sbjct: 261 EGPGGLVMEGHLFKRASNAFKTWSRRWFTIQS------------------NQLVYQKKYK 302

Query: 154 ELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYT 213
           +  + ++                       +L   T+K+  D S+ RFCF ++S +K+  
Sbjct: 303 DPVTVVVD----------------------DLRLCTVKLCPD-SERRFCFEVVSTSKSCL 339

Query: 214 LQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGH---HRSASDSSSFESSDF 270
           LQA+S      W+  +   IAS  S       L  SP G G    H +   +++  S   
Sbjct: 340 LQADSERLLQLWVSAVQSSIASAFSQAR----LDDSPRGPGQGSGHLAIGSAATLGSGGM 395

Query: 271 DHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPD 330
                               R+  G     + V+S         V GN +C DC  P P+
Sbjct: 396 ARG-----------------REPGGVGHVVAQVQS---------VDGNAQCCDCREPAPE 429

Query: 331 WASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 390
           WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N ++E 
Sbjct: 430 WASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCELGNVIINQIYEA 487

Query: 391 LLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDN 450
            +++                     + + KP  S S   KE +IHAKY EK F+ K  + 
Sbjct: 488 RVEA---------------------MAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEI 526

Query: 451 QYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLL---NEQ 507
           +       +         K ++     +         E +  +       A+L       
Sbjct: 527 RGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHP----GALLFRASGHP 582

Query: 508 TSLERSSSSLT-GNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLL 566
            SL   + +L  G   +  + G  N     +    + L       LAC+         LL
Sbjct: 583 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL-------LACE--------FLL 627

Query: 567 QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
           Q GAN+N  DS G  PLH   + G    A L L RGAD  A + EG+  L +A+E+  AD
Sbjct: 628 QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANAD 687

Query: 627 SEVLAILS 634
              L  L+
Sbjct: 688 IVTLLRLA 695

GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6) required for clathrin-dependent export of proteins from recycling endosomes to trans-Golgi network and cell surface.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	638
296085519	832	unnamed protein product [Vitis vinifera]	1.0	0.766	0.860	0.0
224072473	830	predicted protein [Populus trichocarpa]	0.996	0.766	0.844	0.0
224057840	840	predicted protein [Populus trichocarpa]	0.995	0.755	0.821	0.0
255543198	1369	ATP binding protein, putative [Ricinus c	0.996	0.464	0.835	0.0
356523716	1228	PREDICTED: ADP-ribosylation factor GTPas	0.984	0.511	0.834	0.0
356567188	1231	PREDICTED: ADP-ribosylation factor GTPas	0.965	0.500	0.843	0.0
449469220	1191	PREDICTED: ADP-ribosylation factor GTPas	0.995	0.533	0.810	0.0
449520667	1194	PREDICTED: ADP-ribosylation factor GTPas	0.995	0.531	0.810	0.0
357502667	832	ADP-ribosylation factor GTPase-activatin	0.996	0.764	0.803	0.0
297811447	828	hypothetical protein ARALYDRAFT_488148 [	0.981	0.756	0.764	0.0

>gi|296085519|emb|CBI29251.3| unnamed protein product [Vitis vinifera]

 Score = 1111 bits (2873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/638 (86%), Positives = 581/638 (91%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERS YEQAALNE+MQE+KRQIDRESRW
Sbjct: 195 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSKYEQAALNEKMQEFKRQIDRESRW 254

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
            SNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 255 PSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 314

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           FVLDSRGMLYYYRKQ SK SGSGSQ S QRNSSELGSGLLSRWLSSHYHGGVHDEKS A 
Sbjct: 315 FVLDSRGMLYYYRKQNSKPSGSGSQHSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAH 374

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
           HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ
Sbjct: 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 434

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
           APERCLP SPMGS HHRSAS+SSS+ES+DFDH AVEEYTSER+  +A+HER S+G QQ R
Sbjct: 435 APERCLPISPMGSSHHRSASESSSYESTDFDHTAVEEYTSERSSATAHHERPSKGLQQIR 494

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
           SC+KSEKPIDVLRRVCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS
Sbjct: 495 SCIKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 554

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLDVKVWEPSV+TLFQSLGN FANSVWEELLQSR+AF VDL P  L+KSDKPQL  + K
Sbjct: 555 LTLDVKVWEPSVLTLFQSLGNTFANSVWEELLQSRNAFQVDLVPTGLYKSDKPQLHFISK 614

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE 480
           PSH+DSIS+KEK+IHAKYAEKLFVRKPKDNQY   V  QIW+ VRTNDKKAVYR+IVN E
Sbjct: 615 PSHADSISIKEKYIHAKYAEKLFVRKPKDNQYPCLVTQQIWDAVRTNDKKAVYRYIVNSE 674

Query: 481 VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQT 540
            DVN VYEQ  C SSLTLAK MLL EQT+L+ SS  LTG+S D+SS  S N A TSEGQT
Sbjct: 675 ADVNVVYEQTLCNSSLTLAKVMLLQEQTNLDHSSRCLTGDSFDKSSVSSSNAASTSEGQT 734

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           M+D +G +LLHLAC++ADIGMLELLLQYGANINA DSRG  PLHRCILRGKA FAKLLLT
Sbjct: 735 MEDFDGWSLLHLACETADIGMLELLLQYGANINACDSRGQMPLHRCILRGKATFAKLLLT 794

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           RGADPRAVN EGKT  ELAVESNF DS+VLA+LSDS+G
Sbjct: 795 RGADPRAVNGEGKTPFELAVESNFVDSDVLALLSDSNG 832

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072473|ref|XP_002303749.1| predicted protein [Populus trichocarpa] gi|222841181|gb|EEE78728.1| predicted protein [Populus trichocarpa]

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/638 (84%), Positives = 582/638 (91%), Gaps = 2/638 (0%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYI+QVLTYAQQSRERSNYEQA+LNERMQEYKRQIDRESRW
Sbjct: 195 MDAHLRYFKQGYELLHQMEPYIHQVLTYAQQSRERSNYEQASLNERMQEYKRQIDRESRW 254

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           +SNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSS+LRGDWKRRF
Sbjct: 255 SSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSSLRGDWKRRF 314

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           FVLDSRGMLYYYRKQ SK SGSG QLS QRNSSELGSGLLSRWLSSH+HGGVHDEKS A 
Sbjct: 315 FVLDSRGMLYYYRKQSSKPSGSGGQLSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAH 374

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
           HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ
Sbjct: 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 434

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
           APERCL  SP+GSGHHRSAS+SSSFES+DFD +AV+EY SER+  + +HER  R SQQQR
Sbjct: 435 APERCLSASPLGSGHHRSASESSSFESTDFDPSAVDEYASERSHAALHHERAFRSSQQQR 494

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
           +   +EKPIDVL+RVCGND+CADCGAPEPDWASLNLGVL+CIECSGVHRNLGVHISKVRS
Sbjct: 495 TS--AEKPIDVLQRVCGNDKCADCGAPEPDWASLNLGVLICIECSGVHRNLGVHISKVRS 552

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLDVKVWEPSVI+LFQSLGNAFANSVWEELLQSRSA  V+L P    KSDKPQLL +GK
Sbjct: 553 LTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSALQVELIPTGSFKSDKPQLLFIGK 612

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE 480
           P+ +DSISVKEKFIHAKYAEK+FVRKP+DNQ   SVA QIWE VR NDKKAVYR IV+ E
Sbjct: 613 PNPADSISVKEKFIHAKYAEKVFVRKPRDNQNSQSVAQQIWEAVRANDKKAVYRLIVHHE 672

Query: 481 VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQT 540
            DV+AVYEQ SC SSLTLAKAMLL EQT+ E+ SS  TGNS DRSS+ SLN AG+SEG T
Sbjct: 673 ADVSAVYEQASCSSSLTLAKAMLLQEQTNPEQLSSYSTGNSLDRSSTSSLNFAGSSEGLT 732

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           ++DL+GCTLLHLAC++ADIGMLELLLQYGANIN+TDSRG TPLHRCILRG+   AKLLL+
Sbjct: 733 LEDLDGCTLLHLACETADIGMLELLLQYGANINSTDSRGQTPLHRCILRGRPFLAKLLLS 792

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           RGADPRAVN EGKT LELA+ES F +SEVLA+LSDS+G
Sbjct: 793 RGADPRAVNGEGKTPLELAIESGFDESEVLALLSDSNG 830

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057840|ref|XP_002299350.1| predicted protein [Populus trichocarpa] gi|222846608|gb|EEE84155.1| predicted protein [Populus trichocarpa]

 Score = 1066 bits (2756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/649 (82%), Positives = 575/649 (88%), Gaps = 14/649 (2%)

Query: 1   MDAHLRYFKQ----------GYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEY 50
           MDAHLRYFKQ          GYELLHQMEPYI+QVLTYAQQSRERSNYEQAALNERMQEY
Sbjct: 195 MDAHLRYFKQVGHMVALLYFGYELLHQMEPYIHQVLTYAQQSRERSNYEQAALNERMQEY 254

Query: 51  KRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSS 110
           KRQIDRESRW+SNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSS
Sbjct: 255 KRQIDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSS 314

Query: 111 NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG 170
           +LRGDWKRRFFVLD+RGMLYYYRKQCSK SGSG QLS QRNSSELGSGLL RWLSSHYHG
Sbjct: 315 SLRGDWKRRFFVLDNRGMLYYYRKQCSKPSGSGGQLSGQRNSSELGSGLLGRWLSSHYHG 374

Query: 171 GVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT 230
           GVHDEKS A HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT
Sbjct: 375 GVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT 434

Query: 231 GVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHE 290
           GVIASLLSSQAPERCL  SP+GSGHHRSAS+SSSFES+DFD +AV+EYTSER+L +A HE
Sbjct: 435 GVIASLLSSQAPERCLSASPLGSGHHRSASESSSFESTDFDPSAVDEYTSERSL-AALHE 493

Query: 291 RQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRN 350
           R  R SQQQR+   +EKPIDVL+RVCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRN
Sbjct: 494 RALRSSQQQRA--SAEKPIDVLQRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRN 551

Query: 351 LGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKS 410
           LGVHISKVRSLTLDVKVWEPSVI+LFQSLGNAFANSVWEELLQSRSA   +L P    KS
Sbjct: 552 LGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSALQAELIPSGSFKS 611

Query: 411 DKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKK 470
           DKPQLL + KP+ +DSIS+KEKFIHAKYAEK FVRKP+D+Q   SVA QIWE VR NDKK
Sbjct: 612 DKPQLLFISKPNPADSISIKEKFIHAKYAEKAFVRKPRDHQNTRSVAQQIWEAVRANDKK 671

Query: 471 AVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSL-TGNSSDRSSSGS 529
           AVY  IVN E DV+AVYEQ SC SSLTLAK MLL E  + +   SS  TGNS DRSS+ S
Sbjct: 672 AVYWLIVNHEADVSAVYEQASCSSSLTLAKTMLLQELANPDDCCSSYSTGNSVDRSSTIS 731

Query: 530 LNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILR 589
           LN  GT+EGQT++D++GCTLLH+AC++ADIGMLELLLQYGANIN+TDS G TPLHRCILR
Sbjct: 732 LNFPGTTEGQTLEDVDGCTLLHIACETADIGMLELLLQYGANINSTDSGGQTPLHRCILR 791

Query: 590 GKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           G+A  AK+LLTRGADPRAVN + KT LELAVES F +SEVLA+LSDS+G
Sbjct: 792 GRAGLAKMLLTRGADPRAVNGKDKTPLELAVESKFDESEVLALLSDSNG 840

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543198|ref|XP_002512662.1| ATP binding protein, putative [Ricinus communis] gi|223548623|gb|EEF50114.1| ATP binding protein, putative [Ricinus communis]

 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/638 (83%), Positives = 579/638 (90%), Gaps = 2/638 (0%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW
Sbjct: 195 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 254

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           +SNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 255 SSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 314

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           FVLDSRGMLYYYRKQCSKSSGSGSQLS QRNSSELGSGLLSRWLSSHYHGGVHDEKS A 
Sbjct: 315 FVLDSRGMLYYYRKQCSKSSGSGSQLSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAH 374

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
           HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA+DQMDWIEKITGVIASLLSSQ
Sbjct: 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAMDQMDWIEKITGVIASLLSSQ 434

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
           APERCL  SPMGSGHHRSAS+SSSFES+D+DH+A++E+TSER+   A+HER  R  QQ R
Sbjct: 435 APERCLTASPMGSGHHRSASESSSFESADYDHSAIDEFTSERSFAGAHHERPLRIPQQLR 494

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
           S   +EKPIDVLRRVCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS
Sbjct: 495 S--NAEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 552

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLDVKVWEPSVI+LFQSLGNAFANSVWEELLQSRS F VDL PPS +KSD+ +L  + K
Sbjct: 553 LTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSTFQVDLIPPSSNKSDRSKLHFISK 612

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE 480
           PS +DSISVKEKFIHAKYAEKLFVR+P+D+QY + V+ QIWE VR NDKK+VYR IVN E
Sbjct: 613 PSPADSISVKEKFIHAKYAEKLFVRRPRDSQYPNPVSQQIWEAVRANDKKSVYRLIVNHE 672

Query: 481 VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQT 540
            DVNAV EQ SC SSLTLAK MLL E T L+  SS  TGNS DRSS+ SLNL GT EGQ 
Sbjct: 673 ADVNAVCEQASCSSSLTLAKVMLLQEHTGLDHCSSCSTGNSLDRSSTSSLNLMGTGEGQI 732

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           ++DL GC+LLHLAC++ADIGMLELLLQYGA IN +D+RG TPLHRCILRG+A FAKLLL+
Sbjct: 733 LEDLCGCSLLHLACETADIGMLELLLQYGATINLSDTRGQTPLHRCILRGRAAFAKLLLS 792

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           RGADPRA+N EGKT LE+A++SNF + ++L +LS+S+G
Sbjct: 793 RGADPRAINGEGKTPLEIAIDSNFVEHDILVLLSESNG 830

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523716|ref|XP_003530481.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max]

 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/639 (83%), Positives = 567/639 (88%), Gaps = 11/639 (1%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW
Sbjct: 195 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 254

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 255 ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 314

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           FVLDSRGMLYYYRKQCSKSSGS SQ S QRNSSELGSGLLSRWLSSH+HGGVHDEKS A 
Sbjct: 315 FVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAH 374

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
           HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ
Sbjct: 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 434

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
            PER LP SPMGSGHHRS S+SSSFESSDFDH AVEE  ++R+ TSA+ ER SR  QQQR
Sbjct: 435 IPERMLPASPMGSGHHRSTSESSSFESSDFDHYAVEECAADRSFTSAHLERPSRSLQQQR 494

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
           SC KSEKPIDVLRRVCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS
Sbjct: 495 SCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 554

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLDVKVWEPSVI+LFQSLGN FANSVWEELLQSRSAF VDL P  L  SDKP +  + K
Sbjct: 555 LTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGLSTSDKPMMFFITK 614

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE 480
           P  SDS+SVKEKFIHAKYAEKLFVRKPKDNQY   VA QIWE V  NDKKAVYR+IVN +
Sbjct: 615 PCQSDSLSVKEKFIHAKYAEKLFVRKPKDNQYCLLVAQQIWEAVHANDKKAVYRYIVNSD 674

Query: 481 VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQT 540
           VDVNAVYE  +C SSLTLAK MLL EQTS +   S+L GN+ D SS        T EGQ 
Sbjct: 675 VDVNAVYEP-TCSSSLTLAKVMLLQEQTSHDH-GSTLAGNTLDWSS--------TKEGQV 724

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           MD+LEGCTLLHLAC++ADIGM+ELLLQYGAN+NA+DSRG TPLHRCIL+G++ FA+LLL+
Sbjct: 725 MDNLEGCTLLHLACETADIGMVELLLQYGANVNASDSRGQTPLHRCILKGRSTFARLLLS 784

Query: 601 RGADPRAVNREGKTSLELAVESNF-ADSEVLAILSDSHG 638
           RGADPRAV+ +G+T +ELA ESN   D EV A L+DS+G
Sbjct: 785 RGADPRAVDEQGRTPIELAAESNAGGDREVHAPLTDSNG 823

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567188|ref|XP_003551803.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max]

 Score = 1043 bits (2696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/626 (84%), Positives = 561/626 (89%), Gaps = 10/626 (1%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW
Sbjct: 195 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 254

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 255 ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 314

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           FVLDSRGMLYYYRKQCSKSSGS SQ S QRNSSELGSGLLSRWLSSH+HGGVHDEKS A 
Sbjct: 315 FVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAH 374

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
           HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ
Sbjct: 375 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 434

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
            P+R LP SPMGSGHHRS S+SSSFESSDFDH+AVEE  ++R+ TSAY ER SR  QQQR
Sbjct: 435 IPDRMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECAADRSFTSAYLERPSRSLQQQR 494

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
           SC KSEKPIDVLRRVCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS
Sbjct: 495 SCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 554

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLDVKVWEPSVI+LFQSLGN FANSVWEELLQSRSAF VDL P  L KSDKP +  + K
Sbjct: 555 LTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGLSKSDKPMMFFITK 614

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE 480
           P  SDS+SVKEKFIHAKYAEKLFVRKPKDNQY   VA QIWE V  NDKKAVYR+IVN +
Sbjct: 615 PCQSDSLSVKEKFIHAKYAEKLFVRKPKDNQYRLLVAQQIWEAVHANDKKAVYRYIVNSD 674

Query: 481 VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQT 540
           VDVNAVYE  +C SSLTLAK MLL EQTS +  SS+L GN+ D SS        T EGQ 
Sbjct: 675 VDVNAVYEP-TCSSSLTLAKVMLLQEQTSHDH-SSTLAGNTLDWSS--------TKEGQV 724

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           MD+L+GCTLLHLAC++ADIGM+ELLLQYGAN+NATDSRG TPLHRCIL+G++ FA+LLL+
Sbjct: 725 MDNLDGCTLLHLACETADIGMVELLLQYGANVNATDSRGQTPLHRCILKGRSTFARLLLS 784

Query: 601 RGADPRAVNREGKTSLELAVESNFAD 626
           RGADPRAV+ +G+T +ELA ESN  D
Sbjct: 785 RGADPRAVDEQGRTPIELAAESNAGD 810

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469220|ref|XP_004152319.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Cucumis sativus]

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/638 (81%), Positives = 565/638 (88%), Gaps = 3/638 (0%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAAL+ERMQEYKRQ+DRESRW
Sbjct: 177 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALSERMQEYKRQVDRESRW 236

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           +SNGSNGSPNGDGIQAIGRSSHKMIE VMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 237 SSNGSNGSPNGDGIQAIGRSSHKMIEEVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 296

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           FVLDSRG+LYYYRKQC+KSS S SQL+ QRNSSELGSGLLSRWLSSHYHGGVHDEKS A 
Sbjct: 297 FVLDSRGLLYYYRKQCNKSSASLSQLAGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAH 356

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
           HTVNLLTSTIKVDADQSDLRFCFRIISPTK+YTLQAESALDQMDWIEKITGVIASLLSSQ
Sbjct: 357 HTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQAESALDQMDWIEKITGVIASLLSSQ 416

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
           APERCL  SPMGSGHHRS S+SSSFESSDFD  AVEEYTSER+L+S++ +R SR  QQQR
Sbjct: 417 APERCLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYTSERSLSSSHMDRPSRNLQQQR 476

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
           S +K EKPID+LRRVCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS
Sbjct: 477 SVMKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 536

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLDVKVWEPSVI+LFQSLGN FANSVWEE+LQSRSAF VDL    L+KSDK  +  + K
Sbjct: 537 LTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGLYKSDKQNMHFISK 596

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE 480
           PSHSD ISVKEKFIHAKYAEK FVRKPK+ QY H VA QIW+GVR+NDKKAVYRHI+N E
Sbjct: 597 PSHSDPISVKEKFIHAKYAEKAFVRKPKEIQYPHLVAQQIWDGVRSNDKKAVYRHIINSE 656

Query: 481 VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQT 540
            DVNAVY+QV C  SLTLAK ML+ E T LE+ +     +  +RS+S S++  GTSEGQ 
Sbjct: 657 ADVNAVYKQVPC-GSLTLAKVMLMQEPTGLEQHNYK-GSDFVERSTSSSIS-EGTSEGQA 713

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           M+ L+GCTLLHLAC++ DIGMLELLLQ GAN+NA DSR  + LH CI +G+   A+LLL+
Sbjct: 714 MEGLDGCTLLHLACETGDIGMLELLLQCGANVNAIDSRRQSALHHCITKGRTALARLLLS 773

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           RGADPRAVN +GKT LELAVE  F D E+LAILSD++G
Sbjct: 774 RGADPRAVNGDGKTPLELAVELKFNDVEILAILSDANG 811

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520667|ref|XP_004167355.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like, partial [Cucumis sativus]

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/638 (81%), Positives = 565/638 (88%), Gaps = 3/638 (0%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAAL+ERMQEYKRQ+DRESRW
Sbjct: 180 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALSERMQEYKRQVDRESRW 239

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           +SNGSNGSPNGDGIQAIGRSSHKMIE VMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 240 SSNGSNGSPNGDGIQAIGRSSHKMIEEVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 299

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR 180
           FVLDSRG+LYYYRKQC+KSS S SQL+ QRNSSELGSGLLSRWLSSHYHGGVHDEKS A 
Sbjct: 300 FVLDSRGLLYYYRKQCNKSSASLSQLAGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAH 359

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ 240
           HTVNLLTSTIKVDADQSDLRFCFRIISPTK+YTLQAESALDQMDWIEKITGVIASLLSSQ
Sbjct: 360 HTVNLLTSTIKVDADQSDLRFCFRIISPTKSYTLQAESALDQMDWIEKITGVIASLLSSQ 419

Query: 241 APERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQR 300
           APERCL  SPMGSGHHRS S+SSSFESSDFD  AVEEYTSER+L+S++ +R SR  QQQR
Sbjct: 420 APERCLAGSPMGSGHHRSTSESSSFESSDFDQTAVEEYTSERSLSSSHMDRPSRNLQQQR 479

Query: 301 SCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
           S +K EKPID+LRRVCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS
Sbjct: 480 SVMKIEKPIDILRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 539

Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           LTLDVKVWEPSVI+LFQSLGN FANSVWEE+LQSRSAF VDL    L+KSDK  +  + K
Sbjct: 540 LTLDVKVWEPSVISLFQSLGNTFANSVWEEMLQSRSAFQVDLVTAGLYKSDKQNMHFISK 599

Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE 480
           PSHSD ISVKEKFIHAKYAEK FVRKPK+ QY H VA QIW+GVR+NDKKAVYRHI+N E
Sbjct: 600 PSHSDPISVKEKFIHAKYAEKAFVRKPKEIQYPHLVAQQIWDGVRSNDKKAVYRHIINSE 659

Query: 481 VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQT 540
            DVNAVY+QV C  SLTLAK ML+ E T LE+ +     +  +RS+S S++  GTSEGQ 
Sbjct: 660 ADVNAVYKQVPC-GSLTLAKVMLMQEPTGLEQHNYK-GSDFVERSTSSSIS-EGTSEGQA 716

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           M+ L+GCTLLHLAC++ DIGMLELLLQ GAN+NA DSR  + LH CI +G+   A+LLL+
Sbjct: 717 MEGLDGCTLLHLACETGDIGMLELLLQCGANVNAIDSRRQSALHHCITKGRTALARLLLS 776

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           RGADPRAVN +GKT LELAVE  F D E+LAILSD++G
Sbjct: 777 RGADPRAVNGDGKTPLELAVELKFNDVEILAILSDANG 814

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502667|ref|XP_003621622.1| ADP-ribosylation factor GTPase-activating protein AGD3 [Medicago truncatula] gi|355496637|gb|AES77840.1| ADP-ribosylation factor GTPase-activating protein AGD3 [Medicago truncatula]

 Score =  986 bits (2550), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/640 (80%), Positives = 558/640 (87%), Gaps = 4/640 (0%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQ+YKRQIDRESRW
Sbjct: 195 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRW 254

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
           ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQ+AAKGKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 255 ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQNAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 314

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH--DEKSA 178
           FVLDSRGMLYYYRKQCSK SGS SQ S QRNSSELGSGLLSRWLSSH+H      DEKS 
Sbjct: 315 FVLDSRGMLYYYRKQCSKPSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHHGGVHDEKSV 374

Query: 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 238
           A HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS
Sbjct: 375 AHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 434

Query: 239 SQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQ 298
           SQ PER LP SPMGSGH RS S+SSSFESSDFDH AVEE  ++R   S++ ER SR   Q
Sbjct: 435 SQIPERLLPASPMGSGHLRSTSESSSFESSDFDHCAVEESAADRCFVSSHLERASRNLNQ 494

Query: 299 QRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 358
           QRSC KSEKPI+VLRRV GND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV
Sbjct: 495 QRSCNKSEKPIEVLRRVIGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 554

Query: 359 RSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLM 418
           RSLTLDVKVWEPSVITLFQSLGN FANSVWEELLQSRSAF VDL P    KSDKPQ + +
Sbjct: 555 RSLTLDVKVWEPSVITLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGSSKSDKPQTVFI 614

Query: 419 GKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVN 478
            KP   DS++VKEKFI AKYAEK+FVRKPKDNQY   VA QIWE VR NDKKAVYR+IVN
Sbjct: 615 TKPGQYDSLAVKEKFIQAKYAEKIFVRKPKDNQYRLLVAQQIWEAVRANDKKAVYRYIVN 674

Query: 479 FEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG 538
            +VDVN VYEQ +C +SLTLAK MLL EQ + + +S +L GN+ D SS+ S+NL G+ EG
Sbjct: 675 SDVDVNVVYEQ-ACNNSLTLAKVMLLQEQANND-NSPNLAGNTLDWSSNCSMNLVGSKEG 732

Query: 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
           Q M +LEGCTLLH+AC++ADIGM+ELLLQYGANINATD RG TPLHRCIL+G+++ A+LL
Sbjct: 733 QPMLNLEGCTLLHIACETADIGMVELLLQYGANINATDMRGRTPLHRCILKGRSIIARLL 792

Query: 599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           L+RG DPRAV+ +G+T +ELA ESN  D  V A  +DS+G
Sbjct: 793 LSRGGDPRAVDEDGRTPIELAAESNADDRVVHAPSNDSNG 832

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811447|ref|XP_002873607.1| hypothetical protein ARALYDRAFT_488148 [Arabidopsis lyrata subsp. lyrata] gi|297319444|gb|EFH49866.1| hypothetical protein ARALYDRAFT_488148 [Arabidopsis lyrata subsp. lyrata]

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/640 (76%), Positives = 542/640 (84%), Gaps = 14/640 (2%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
           MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNE+MQEYKRQ+DRESRW
Sbjct: 195 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNEKMQEYKRQVDRESRW 254

Query: 61  ASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
            SNGSNGSPNGDGIQAIGRSSHKMI+AVMQSAA+GKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct: 255 GSNGSNGSPNGDGIQAIGRSSHKMIDAVMQSAARGKVQTIRQGYLSKRSSNLRGDWKRRF 314

Query: 121 FVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLS--SHYHGGVHDEKSA 178
           FVLDSRGMLYYYRKQCSK SGSGSQLS QRNSSELGSGLLSRWLS  SH HGGVHDEKS 
Sbjct: 315 FVLDSRGMLYYYRKQCSKPSGSGSQLSGQRNSSELGSGLLSRWLSSNSHGHGGVHDEKSV 374

Query: 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 238
           ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS
Sbjct: 375 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 434

Query: 239 SQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQ 298
           SQ PE+ LP SPMGSGHHRSAS+SSS+ESS++DH   EE+  ER+    YHER SR  Q 
Sbjct: 435 SQVPEQRLPGSPMGSGHHRSASESSSYESSEYDHPTTEEFVCERSFL-GYHERPSRSFQP 493

Query: 299 QRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 358
           QRS  K EKPID LR+VCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV
Sbjct: 494 QRSIRKGEKPIDALRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 553

Query: 359 RSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLM 418
           RSLTLDVKVWEPSVI+LFQ+LGN FAN+VWEELL SRSAFHVD   P L  SDK ++++ 
Sbjct: 554 RSLTLDVKVWEPSVISLFQALGNTFANTVWEELLHSRSAFHVD---PGLTGSDKSRVMVT 610

Query: 419 GKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVN 478
           GKPS++D IS+KEK+I AKYAEKLFVR+ +D  +  SVA Q+W+ V  NDKKAVYR IVN
Sbjct: 611 GKPSYADMISIKEKYIQAKYAEKLFVRRSRDCDFPQSVAQQMWDAVSGNDKKAVYRLIVN 670

Query: 479 FEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG 538
            + DVN+VY+Q S  SSLTL++ +L+ E+   E     L     DR+ S S N++    G
Sbjct: 671 GDADVNSVYDQSSSSSSLTLSRVILVPERPKREDVLLRLRNELLDRTGSSS-NISPEGSG 729

Query: 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
                  G +LLH AC+ ADIGM+ELLLQYGAN+NA+DS G TPLH C+LRGKA  A+LL
Sbjct: 730 -------GSSLLHCACEKADIGMVELLLQYGANVNASDSSGQTPLHCCLLRGKATIARLL 782

Query: 599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           LTRGADP A+N EGKT+L++A ES F D EVLA+LSD +G
Sbjct: 783 LTRGADPEAMNGEGKTALDIAAESKFTDPEVLALLSDPNG 822

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	638
TAIR|locus:2183916	827	SFC "SCARFACE" [Arabidopsis th	0.979	0.755	0.651	3.3e-214
TAIR|locus:2197359	775	AGD4 "ARF-GAP domain 4" [Arabi	0.373	0.307	0.444	1.8e-110
TAIR|locus:2025850	776	AGD2 "ARF-GAP domain 2" [Arabi	0.271	0.222	0.502	6.4e-110
UNIPROTKB|Q96P50	834	ACAP3 "Arf-GAP with coiled-coi	0.133	0.101	0.574	1.3e-46
UNIPROTKB|F1MWF6	820	ACAP3 "Uncharacterized protein	0.133	0.103	0.574	6.2e-46
UNIPROTKB|D4AAD1	833	Acap3 "Protein Acap3" [Rattus	0.133	0.102	0.574	1.6e-45
UNIPROTKB|E2QY37	833	ACAP3 "Uncharacterized protein	0.133	0.102	0.563	2e-44
UNIPROTKB|F1RJG0	821	ACAP3 "Uncharacterized protein	0.133	0.103	0.574	9.1e-43
UNIPROTKB|F1NGZ5	834	ACAP3 "Uncharacterized protein	0.133	0.101	0.563	1.3e-42
UNIPROTKB|D4A346	563	Acap3 "Protein Acap3" [Rattus	0.133	0.150	0.574	1.5e-42

TAIR|locus:2183916 SFC "SCARFACE" [Arabidopsis thaliana (taxid:3702)]

 Score = 2070 (733.7 bits), Expect = 3.3e-214, P = 3.3e-214
 Identities = 417/640 (65%), Positives = 469/640 (73%)

Query:     1 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
             MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNE+MQEYKRQ+DRESRW
Sbjct:   195 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNEKMQEYKRQVDRESRW 254

Query:    61 AXXXXXXXXXXDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
                        DGIQAIGRSSHKMI+AVMQSAA+GKVQTIRQGYLSKRSSNLRGDWKRRF
Sbjct:   255 GSNGSNGSPNGDGIQAIGRSSHKMIDAVMQSAARGKVQTIRQGYLSKRSSNLRGDWKRRF 314

Query:   121 FVLDSRGMLYYYRKQCXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXHYHGGVHDEKSA 178
             FVLDSRGMLYYYRKQC                                H HGGVHDEKS 
Sbjct:   315 FVLDSRGMLYYYRKQCSKPSGSGSQLSGQRNSSELGSGLLSRWLSSNNHGHGGVHDEKSV 374

Query:   179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 238
             ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS
Sbjct:   375 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 434

Query:   239 SQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXX 298
             SQ PE+ LP SPM                        EE+  ER+    Y+E        
Sbjct:   435 SQVPEQRLPGSPMGSGHHRSASESSSYESSEYDHPTTEEFVCERSFLG-YNERPSRSFQP 493

Query:   299 XXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 358
                  K EKPID LR+VCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV
Sbjct:   494 QRSIRKGEKPIDALRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKV 553

Query:   359 RSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLM 418
             RSLTLDVKVWEPSVI+LFQ+LGN FAN+VWEELL SRSA H D   P L  SDK ++++ 
Sbjct:   554 RSLTLDVKVWEPSVISLFQALGNTFANTVWEELLHSRSAIHFD---PGLTVSDKSRVMVT 610

Query:   419 GKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVN 478
             GKPS++D IS+KEK+I AKYAEKLFVR+ +D+ +  S A Q+W+ V  NDKKAVYR IVN
Sbjct:   611 GKPSYADMISIKEKYIQAKYAEKLFVRRSRDSDFPQSAAQQMWDAVSGNDKKAVYRLIVN 670

Query:   479 FEVDVNAVYEQVSCISSLTLAKAMLLNEQXXXXXXXXXXXXXXXXXXXXXXXXXAGTSEG 538
              + DVN VY+Q S  SSLTL++ +L+ E+                          G+S  
Sbjct:   671 GDADVNYVYDQTSS-SSLTLSRVILVPERPKREDVLLRLRNELLDRT--------GSSSN 721

Query:   539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
              + +   G +LLH AC+ AD+GM+ELLLQYGAN+NA+DS G TPLH C+LRGK   A+LL
Sbjct:   722 ISPEGSGGSSLLHCACEKADLGMVELLLQYGANVNASDSSGQTPLHCCLLRGKVTIARLL 781

Query:   599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
             LTRGADP A+NREGKT+L++A ESNF D EVLA+LSD++G
Sbjct:   782 LTRGADPEAMNREGKTALDIAAESNFTDPEVLALLSDTNG 821

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006897 "endocytosis" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0003002 "regionalization" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0033043 "regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2197359 AGD4 "ARF-GAP domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 1.8e-110, Sum P(3) = 1.8e-110
 Identities = 111/250 (44%), Positives = 146/250 (58%)

Query:     1 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRW 60
             MDAHLRYFK GY+LL+Q+EP+I+Q+LTYAQQS+E+S  EQ  L  R+QE++ Q + +S+ 
Sbjct:   196 MDAHLRYFKLGYDLLNQLEPFIHQILTYAQQSKEQSKIEQDRLARRIQEFRTQSELDSQ- 254

Query:    61 AXXXXXXXXXXDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRF 120
                        +G +  G   +K  E  + +A K   + I+QGYL KRSS+LR DWKR+F
Sbjct:   255 QLVANAESSGANGNRVGGNIPYKNTETSL-TADK---EVIKQGYLLKRSSSLRTDWKRKF 310

Query:   121 FVLDSRGMLYYYRKQCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHYHGGVHDEKSAAR 180
             FVLDS G +YYYR                                 H   G   E S   
Sbjct:   311 FVLDSHGSMYYYRTN---GNKSMGSHHHYSGSSDHNTGVFGRFRARHNRSGSLTEGSLGY 367

Query:   181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS- 239
             +T++L TS IK+DA+  DLR CFRIISP K YTLQAE+  D+MDW+ KIT  I +LL+S 
Sbjct:   368 NTIDLRTSLIKLDAEDMDLRLCFRIISPQKTYTLQAENGADRMDWVNKITKAIGTLLNSH 427

Query:   240 ---QAPERCL 246
                Q+P R L
Sbjct:   428 FLQQSPVRYL 437

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2025850 AGD2 "ARF-GAP domain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 6.4e-110, Sum P(3) = 6.4e-110
 Identities = 93/185 (50%), Positives = 127/185 (68%)

Query:   309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
             + +LR + GN+ CA+C AP+PDWASLNLGVL+CIECSGVHRNLGVHISKVRSLTLDVKVW
Sbjct:   470 LTILREIPGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVRSLTLDVKVW 529

Query:   369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
             EP+++ LF++LGN + NSVWEELL      H+D       K     L  + KPS  D  +
Sbjct:   530 EPTILDLFRNLGNGYCNSVWEELLH-----HLD---DDSEKGSTDTLASVSKPSSEDWFT 581

Query:   429 VKEKFIHAKYAEKLFVRKPKDNQYLHSVAH-QIWEGVRTNDKKAVYRHIVNFEVDV-NAV 486
             +KEK+I+ KY EK  V   KD +  +S A  +IWE V++ + + +YR IV  + ++ N  
Sbjct:   582 LKEKYINGKYLEKALV--VKDEREANSTASSRIWEAVQSRNIRDIYRLIVKADANIINTK 639

Query:   487 YEQVS 491
             ++ ++
Sbjct:   640 FDDIT 644

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016569 "covalent chromatin modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|Q96P50 ACAP3 "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 1.3e-46, Sum P(6) = 1.3e-46
 Identities = 50/87 (57%), Positives = 64/87 (73%)

Query:   303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLT 362
             VK E  +  ++ V GN +C DCG P+P WAS+NLGVL+CIECSG+HR+LGVH SKVRSLT
Sbjct:   400 VKGESVLQRVQSVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLT 459

Query:   363 LDVKVWEPSVITLFQSLGNAFANSVWE 389
             LD   WEP ++ L   LGN+  N ++E
Sbjct:   460 LDS--WEPELLKLMCELGNSAVNQIYE 484

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1MWF6 ACAP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 6.2e-46, Sum P(6) = 6.2e-46
 Identities = 50/87 (57%), Positives = 64/87 (73%)

Query:   303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLT 362
             VK E  +  ++ V GN +C DCG P+P WAS+NLGVL+CIECSG+HR+LGVH SKVRSLT
Sbjct:   387 VKGESVLQRVQNVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLT 446

Query:   363 LDVKVWEPSVITLFQSLGNAFANSVWE 389
             LD   WEP ++ L   LGN+  N ++E
Sbjct:   447 LDS--WEPELLKLMCELGNSTVNQIYE 471

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|D4AAD1 Acap3 "Protein Acap3" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 1.6e-45, Sum P(6) = 1.6e-45
 Identities = 50/87 (57%), Positives = 63/87 (72%)

Query:   303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLT 362
             VK E  +  ++ V GN +C DCG P+P WAS+NLGVL+CIECSG+HR+LGVH SKVRSLT
Sbjct:   400 VKGESVLQRVQSVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLT 459

Query:   363 LDVKVWEPSVITLFQSLGNAFANSVWE 389
             LD   WEP ++ L   LGN   N ++E
Sbjct:   460 LDS--WEPELLKLMCELGNNTMNQIYE 484

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|E2QY37 ACAP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 2.0e-44, Sum P(6) = 2.0e-44
 Identities = 49/87 (56%), Positives = 63/87 (72%)

Query:   303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLT 362
             VK E  +  ++ V GN +C DCG  +P WAS+NLGVL+CIECSG+HR+LGVH SKVRSLT
Sbjct:   400 VKGESVLQRVQNVAGNSQCGDCGQLDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLT 459

Query:   363 LDVKVWEPSVITLFQSLGNAFANSVWE 389
             LD   WEP ++ L   LGN+  N ++E
Sbjct:   460 LDS--WEPELLKLMCELGNSTMNQIYE 484

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1RJG0 ACAP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 276 (102.2 bits), Expect = 9.1e-43, Sum P(5) = 9.1e-43
 Identities = 50/87 (57%), Positives = 64/87 (73%)

Query:   303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLT 362
             VK E  +  ++ V GN +C DCG P+P WAS+NLGVL+CIECSG+HR+LGVH SKVRSLT
Sbjct:   388 VKGESVLQRVQGVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLT 447

Query:   363 LDVKVWEPSVITLFQSLGNAFANSVWE 389
             LD   WEP ++ L   LGN+  N ++E
Sbjct:   448 LDS--WEPELLKLMCELGNSTMNQIYE 472

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1NGZ5 ACAP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 276 (102.2 bits), Expect = 1.3e-42, Sum P(5) = 1.3e-42
 Identities = 49/87 (56%), Positives = 65/87 (74%)

Query:   303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLT 362
             VK E  +  ++ + GND+C DCG P+P WAS+NLG+L+CIECSG+HR+LGVH SKVRSLT
Sbjct:   400 VKGETILQRVQSIPGNDQCCDCGQPDPRWASINLGILLCIECSGIHRSLGVHCSKVRSLT 459

Query:   363 LDVKVWEPSVITLFQSLGNAFANSVWE 389
             LD   WEP ++ L   LGN+  N ++E
Sbjct:   460 LDS--WEPELLKLMCELGNSTMNQIYE 484

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|D4A346 Acap3 "Protein Acap3" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 1.5e-42, Sum P(5) = 1.5e-42
 Identities = 50/87 (57%), Positives = 63/87 (72%)

Query:   303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLT 362
             VK E  +  ++ V GN +C DCG P+P WAS+NLGVL+CIECSG+HR+LGVH SKVRSLT
Sbjct:   130 VKGESVLQRVQSVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLT 189

Query:   363 LDVKVWEPSVITLFQSLGNAFANSVWE 389
             LD   WEP ++ L   LGN   N ++E
Sbjct:   190 LDS--WEPELLKLMCELGNNTMNQIYE 214

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5W7F2	AGD3_ARATH	No assigned EC number	0.7578	0.9796	0.7557	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006190001 SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (832 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	638
pfam01412	117	pfam01412, ArfGap, Putative GTPase activating prot	1e-46
smart00105	119	smart00105, ArfGap, Putative GTP-ase activating pr	2e-39
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	4e-34
COG5347	319	COG5347, COG5347, GTPase-activating protein that r	9e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-13
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-13
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-12
pfam00169	101	pfam00169, PH, PH domain	6e-12
PLN03114	395	PLN03114, PLN03114, ADP-ribosylation factor GTPase	4e-11
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	9e-11
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	1e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-06
cd01251	105	cd01251, PH2_ADAP, ArfGAP with dual PH domains Ple	3e-06
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	4e-06
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	8e-06
smart00248	30	smart00248, ANK, ankyrin repeats	1e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-05
cd01233	111	cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein p	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	5e-05
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	5e-05
cd10573	96	cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosin	7e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
cd13247	125	cd13247, BAR-PH_APPL, Adaptor protein containing P	1e-04
cd07606	202	cd07606, BAR_SFC_plant, The Bin/Amphiphysin/Rvs (B	1e-04
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	1e-04
cd13266	106	cd13266, PH_Skap_family, Src kinase-associated pho	1e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	3e-04
cd13269	106	cd13269, PH_alsin, Alsin Pleckstrin homology (PH)	3e-04
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	3e-04
cd01218	123	cd01218, PH_Phafin2-like, Phafin2 (also called EAP	3e-04
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	3e-04
cd13380	106	cd13380, PH_Skap1, Src kinase-associated phosphopr	3e-04
cd13292	103	cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol bin	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-04
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	5e-04
cd13277	111	cd13277, PH_Bem3, Bud emergence protein 3 (Bem3) P	6e-04
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	7e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-04
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	0.001
cd01250	114	cd01250, PH_AGAP, Arf-GAP with GTPase, ANK repeat	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
cd13251	108	cd13251, PH_ASAP, ArfGAP with SH3 domain, ankyrin	0.002
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	0.002
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.003
cd13265	108	cd13265, PH_evt, Evectin Pleckstrin homology (PH)	0.003
cd13281	139	cd13281, PH_PLEKHD1, Pleckstrin homology (PH) doma	0.003
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.004

>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf

 Score =  159 bits (405), Expect = 1e-46
 Identities = 62/142 (43%), Positives = 75/142 (52%), Gaps = 25/142 (17%)

Query: 306 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 365
           ++ +  LR++ GN  CADCGAP P WASLNLG+ +CI CSGVHR+LGVHISKVRSLTLD 
Sbjct: 1   KRLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLD- 59

Query: 366 KVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSD 425
             W P  +   ++ GN  AN  WE                       P+      P  S 
Sbjct: 60  -KWTPEQLEFMKAGGNKRANEFWE------------------ANLPPPK-----PPPSSS 95

Query: 426 SISVKEKFIHAKYAEKLFVRKP 447
               +E FI AKY EKLF    
Sbjct: 96  DREKRESFIRAKYVEKLFAEAE 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117

>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF

 Score =  140 bits (354), Expect = 2e-39
 Identities = 66/136 (48%), Positives = 76/136 (55%), Gaps = 24/136 (17%)

Query: 309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
           + +LR + GN +C DCGAP P WAS+NLGV +CIECSG+HR+LGVHISKVRSLTLD   W
Sbjct: 1   LKLLRSIPGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD--TW 58

Query: 369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
               + L Q  GN  ANS+WE  L   S                       KP   D   
Sbjct: 59  TEEELRLLQKGGNENANSIWESNLDDFS----------------------LKPPDDDDQQ 96

Query: 429 VKEKFIHAKYAEKLFV 444
             E FI AKY EKLFV
Sbjct: 97  KYESFIAAKYEEKLFV 112

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score =  124 bits (314), Expect = 4e-34
 Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 40/138 (28%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
           ++GYL KRSSN    WKRR+F + + G L Y ++                          
Sbjct: 1   KEGYLFKRSSNAFKTWKRRWFSIQN-GQLVYQKRF------------------------- 34

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAL 220
                         + +      +L   T+K   +  D RFCF ++SPTK+Y LQAES  
Sbjct: 35  -------------KKDTPTVVVEDLRLCTVKP-CEDIDRRFCFEVVSPTKSYMLQAESEE 80

Query: 221 DQMDWIEKITGVIASLLS 238
           D+  WI+ I   IAS L+
Sbjct: 81  DRQAWIQAIQAAIASALN 98

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

 Score =  111 bits (278), Expect = 9e-27
 Identities = 52/135 (38%), Positives = 70/135 (51%), Gaps = 23/135 (17%)

Query: 310 DVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWE 369
            +L+    N +CADCGAP P WAS+NLGV +CI+C+GVHR+LGVHISKV+SLTLD   W 
Sbjct: 12  KLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD--NWT 69

Query: 370 PSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISV 429
              +   +  GN+ AN  +E+                          L+         SV
Sbjct: 70  EEELRRMEVGGNSNANRFYEK---------------------NLLDQLLLPIKAKYDSSV 108

Query: 430 KEKFIHAKYAEKLFV 444
            +K+I  KY  K F+
Sbjct: 109 AKKYIRKKYELKKFI 123

Length = 319

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.0 bits (234), Expect = 7e-23
 Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LHLA  +  + +++LLL+ GA++NA D  G TPLH     G     KLLL  G
Sbjct: 37  DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           AD  A +++G+T L LA ++     EV+ +L
Sbjct: 97  ADVNARDKDGRTPLHLAAKNG--HLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.8 bits (218), Expect = 9e-21
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LHLA  +  + +++LLL+ GA++NA D+ G TPLH     G     KLLL +G
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           AD  A +++G T L LA  +   + +V+ +L
Sbjct: 64  ADVNARDKDGNTPLHLAARNG--NLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.2 bits (167), Expect = 8e-14
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           D +G T LHLA  + ++ +++LLL++GA++NA D  G TPLH     G     KLLL
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           LHLA  + ++ +++LLL+ GA++N  D+   T LH     G     KLLL  GAD  A +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 610 REGKTSLELAVESNFAD 626
           ++G T+L LA  +   +
Sbjct: 59  KDGNTALHLAARNGNLE 75

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query: 536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA 595
            +G  ++  +  T LHLA  + ++ +++LLL++GA++NA D  G T LH     G     
Sbjct: 18  EKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIV 77

Query: 596 KLLLTRGADPRAVN 609
           KLLL  GAD    +
Sbjct: 78  KLLLEHGADINLKD 91

Length = 91

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 65.3 bits (159), Expect = 4e-13
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 40/139 (28%)

Query: 99  TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
            I++G+L K+S   +  WK+R+FVL +  +LYY      KS                   
Sbjct: 1   VIKEGWLYKKSGGGKKSWKKRYFVLFNSTLLYY------KSKKDK--------------- 39

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQS--DLRFCFRIISPTKN-YTLQ 215
                           +    + +++L   T++   D        CF I +  +    LQ
Sbjct: 40  ----------------KSYKPKGSIDLSGCTVREAPDPDSSKKPHCFEIKTSDRKTLLLQ 83

Query: 216 AESALDQMDWIEKITGVIA 234
           AES  ++  W+E +   IA
Sbjct: 84  AESEEEREKWVEALRKAIA 102

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 546 GCTLLHL-ACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK---LLLTR 601
           G T LHL   ++  + +++LL++ GA++NA D  G TPLH   L G  +  K   LLL +
Sbjct: 83  GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY-LSGFNINPKVIRLLLRK 141

Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           GAD  A++  G T L + ++S  A+ E+L +L
Sbjct: 142 GADVNALDLYGMTPLAVLLKSRNANVELLRLL 173

Length = 471

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 41/138 (29%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           I++G+L K+ S  R  WK+R+FVL    +LYY      K S                   
Sbjct: 2   IKEGWLLKKGSGGRKSWKKRYFVLFDGVLLYY------KDS------------------- 36

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQ--SDLRFCFRIISPTKN-YTLQA 216
                            S  + ++ L    +    D      + CF I +  +  + LQA
Sbjct: 37  -------------KKSSSRPKGSIPLSGCQVTKVPDSEDGKRKNCFEIRTGDRETFLLQA 83

Query: 217 ESALDQMDWIEKITGVIA 234
           ES  ++ +W++ I   I 
Sbjct: 84  ESEEERKEWVKAIRSAIR 101

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
           N  C DC A  P WAS+  G+ +CI+CS VHR+LGVHIS VRS  LD   W    + +  
Sbjct: 22  NKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD--SWSSEQLKMMI 79

Query: 378 SLGNAFANSVWEE 390
             GN  A   +++
Sbjct: 80  YGGNNRAQVFFKQ 92

Length = 395

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 58.9 bits (143), Expect = 9e-11
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 39/145 (26%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
           + G+L+K+  +++  W+RR+FVL  +G L+Y++                 +S   G   L
Sbjct: 9   KAGWLTKQGGSIK-TWRRRWFVL-KQGKLFYFK-------------DEDPDSEPRGVIDL 53

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAL 220
           S                           T+K   + ++  F F + +P + + L A+S  
Sbjct: 54  SD------------------------CLTVKSAEEATNKEFAFEVSTPERTFYLIADSEK 89

Query: 221 DQMDWIEKITGVIASLLSSQAPERC 245
           ++ +WI  I   I  L  S+     
Sbjct: 90  EKEEWISAIGRAIVKLSRSKGTIDE 114

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 40/130 (30%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
           ++G+L KR       WK+R+FVL    +L YY+ +                         
Sbjct: 1   KEGWLKKRGGKGLKSWKKRWFVL-FDDVLLYYKSK------------------------- 34

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT--KNYTLQAES 218
                        D     +  + L           S    CF +++P   + Y LQAES
Sbjct: 35  ------------KDSSKKPKGLIPLSDGLEVELVSSSGKPNCFELVTPDRGRTYYLQAES 82

Query: 219 ALDQMDWIEK 228
             ++ +W+E 
Sbjct: 83  EEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 548 TLLHLACD-----SADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA--KLLLT 600
           T LH   +     +    +++LLL+YGAN+NA D+ G+TPL   I +    ++  + LL 
Sbjct: 70  TPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD 129

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAIL 633
            GA+    N +G+  L L +ESN  D ++L +L
Sbjct: 130 NGANVNIKNSDGENLLHLYLESNKIDLKILKLL 162

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 63.0 bits (153), Expect = 3e-10
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 549 LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 608
           L  LA     +G   +LL  GA+ N  D  G TPLH     G     ++LL  GADP  +
Sbjct: 86  LCQLAASGDAVG-ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL 144

Query: 609 NREGKTSLELAVESNFAD 626
           +++GKT LELA E+ F +
Sbjct: 145 DKDGKTPLELAEENGFRE 162

Length = 664

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 20/111 (18%)

Query: 546 GCTLLHLA--CDSADIGMLELLLQYGANINATDS----------------RGLTPLHRCI 587
           G  LLHL    +  D+ +L+LL+  G +INA +                  G TPLH  +
Sbjct: 141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAV 200

Query: 588 LRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
                 F K LL  GA+P  VN+ G T L +A+ +N  + E+  +L ++  
Sbjct: 201 YNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNN--NKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           T LH A  S  + +++ LL+ G +IN TD  G T LH     G     KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.4 bits (135), Expect = 8e-09
 Identities = 37/92 (40%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF-----AKL 597
           DL+G   LH A    D  +++LLL  GA++NA D+ G TPLH   L G         AKL
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 598 LLTRGADPRAVNRE---GKTSLELAVESNFAD 626
           LL  GAD    N     G T L  A  +  AD
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDAD 161

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 573 NATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAI 632
           NA D  G TPLH     G     KLLL  GAD  A + +G+T L LA ++     E++ +
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG--HLEIVKL 58

Query: 633 L 633
           L
Sbjct: 59  L 59

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 565 LLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
           LL++G  ++NATD  G TPLH     G     + LL  G D    + +G T+L+LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 24/68 (35%), Positives = 32/68 (47%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D+ G T LH A  + +   ++ LL  GAN N  +  G TPLH  IL       KLLL  G
Sbjct: 189 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 248

Query: 603 ADPRAVNR 610
              + +  
Sbjct: 249 PSIKTIIE 256

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 541 MDDLEGCTLLHLAC-----DSADIGMLELLLQYGA---NINATDSRGLTPLHRCILRGKA 592
             D +G T LHLA         +I + +LLL+ GA     N  D  G TPLH   L G A
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160

Query: 593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH 637
              +LLL  GADP + N  G T+L+ A ++   +   L +    H
Sbjct: 161 DIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 543 DLEGCTLLHLACDSA-DIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLT 600
           D  G T LH++     D  +L+LLL++G ++NA     GLT LH  I   + +  KLLL 
Sbjct: 231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKL--KLLLE 288

Query: 601 RGADPRAVNREGKTSLELAV 620
            GAD  ++N    T L  AV
Sbjct: 289 YGADINSLNSYKLTPLSSAV 308

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 547 CTLLHLAC-DSADIGMLELLLQYGANINATDSRGLTPLHRCILRG-KAMFAKLLLTRGAD 604
              LH +     DI  + LLL+ GA++NA +  G TPLH  +         KLL+  GAD
Sbjct: 52  HLYLHYSSEKVKDI--VRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD 109

Query: 605 PRAVNREGKTSLELAVESNFADSEVLAIL 633
             A ++ G+T L + +     + +V+ +L
Sbjct: 110 VNAKDKVGRTPLHVYLSGFNINPKVIRLL 138

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
           + LHLA    DI  +ELL+ + A ++  D  G TPL   + +G     K+LL  GA+   
Sbjct: 137 SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY 196

Query: 608 VNREGK-TSLELAVESNFAD 626
             + G   +L  A+E+N  D
Sbjct: 197 FGKNGCVAALCYAIENNKID 216

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH 584
           D  G T LHLA     + +++ LL+ G ++N  DS GLT L 
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.6 bits (109), Expect = 6e-07
 Identities = 14/32 (43%), Positives = 23/32 (71%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATD 576
           +G T LHLA  +  + +++LLL+ GA++NA D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.0 bits (124), Expect = 8e-07
 Identities = 26/65 (40%), Positives = 38/65 (58%)

Query: 563 ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
           E+LL+ GA++NA D   +TP+H    RG A    LLL+ GAD   +  +  + LE AV+S
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS 221

Query: 623 NFADS 627
              D+
Sbjct: 222 KNIDT 226

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 530 LNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILR 589
           L L+  ++    D  +G T LH A ++ D  + ELLL YGAN+N  D    +PLH  +  
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKH 211

Query: 590 GKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
                  +LL  GA   A ++ G T L ++V     D ++L +L + HG
Sbjct: 212 YNKPIVHILLENGASTDARDKCGNTPLHISV-GYCKDYDILKLLLE-HG 258

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 540 TMDDLEGCTLLH--LACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA-- 595
              D  G T LH  L+  + +  ++ LLL+ GA++NA D  G+TPL   +L+ +      
Sbjct: 111 NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA-VLLKSRNANVEL 169

Query: 596 -KLLLTRGADPRAVNREGKTSLE 617
            +LL+  GAD  AV+   ++ L 
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|241282 cd01251, PH2_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 2

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 41/140 (29%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           +++GYL K        +++R+F LD R  L Y++                          
Sbjct: 3   LKEGYLEKTGPKQTDGFRKRWFTLDDR-RLMYFKDP------------------------ 37

Query: 160 LSRWLSSHYHG----GVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQ 215
               L +   G    G  +E  + R  +            +    F F +++P + + L 
Sbjct: 38  ----LDAFPKGEIFIGSKEEGYSVREGL--------PAGIKGHWGFGFTLVTPDRTFVLS 85

Query: 216 AESALDQMDWIEKITGVIAS 235
           AE+  ++ +WI  I  V+  
Sbjct: 86  AETEEERREWITAIQKVLER 105

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 48/134 (35%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRG-MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           ++GYL K+       +++R+FVL  +G +L+Y+ K+  +                LG  +
Sbjct: 10  KEGYLWKKGERNTS-YQKRWFVL--KGNLLFYFEKKGDREP--------------LGVIV 52

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRII---SPTKNYTLQA 216
           L                     TV L          + +  + F I      +++Y L A
Sbjct: 53  L------------------EGCTVELS---------EDEEPYAFAIRFDGPGSRSYVLAA 85

Query: 217 ESALDQMDWIEKIT 230
           ES  D   W++ ++
Sbjct: 86  ESQEDMESWMKALS 99

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 46/135 (34%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
           + GYL+K    ++  WKRR+FVL + G L+YY+                           
Sbjct: 1   KAGYLTKLGGKVK-TWKRRWFVLKN-GELFYYKSP------------------------- 33

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTS--TIKVDADQSDLRFCFRIISPTKNYTLQAES 218
                       +D     +  + L  S    + +  Q+     F I++  + Y L A+S
Sbjct: 34  ------------NDVIRKPQGQIALDGSCEIARAEGAQT-----FEIVTEKRTYYLTADS 76

Query: 219 ALDQMDWIEKITGVI 233
             D  +WI  I  V+
Sbjct: 77  ENDLDEWIRVIQNVL 91

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINA 574
           +G T LHLA ++ ++ +++LLL  GA+INA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINA 574
           +G T LHLA  + ++ +++LLL++GA+INA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 543 DLEGCTLLHLA---CDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           D+ G T LH            +L LL+  G +INA +  G TPLH   +       + L+
Sbjct: 219 DMLGNTPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLI 277

Query: 600 TRGADPRAVNREGKTSLELAV 620
             GAD  AV+ +G T L L V
Sbjct: 278 ALGADINAVSSDGNTPLSLMV 298

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 27/79 (34%), Positives = 39/79 (49%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D E  T LH A    D+  +++L +YGA++N  D  G  P+H  I        KLLL +G
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 603 ADPRAVNREGKTSLELAVE 621
           A     +  G++ L  A E
Sbjct: 181 AYANVKDNNGESPLHNAAE 199

Length = 434

>gnl|CDD|241266 cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein pleckstrin homology (PH) domain

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 44/133 (33%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
            ++GYL     +    W RR+ VL  R  L+ Y              SS+++  E G   
Sbjct: 15  SKKGYLL-FLEDATDGWVRRWVVL-RRPYLHIY--------------SSEKDGDERG--- 55

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDL---RFCFRIISPTKNYTLQA 216
                                  +NL T+ ++   DQ  L      F + +PT +Y LQA
Sbjct: 56  ----------------------VINLSTARVEYSPDQEALLGRPNVFAVYTPTNSYLLQA 93

Query: 217 ESALDQMDWIEKI 229
            S  +  DW+  I
Sbjct: 94  RSEKEMHDWLYAI 106

The kinesin-3 family motors KIFIA (Caenorhabditis elegans homolog unc-104) and KIFIB transport synaptic vesicle precursors that contain synaptic vesicle proteins, such as synaptophysin, synaptotagmin and the small GTPase RAB3A, but they do not transport organelles that contain plasma membrane proteins. They have a N-terminal motor domain, followed by a coiled-coil domain, and a C-terminal PH domain. KIF1A adopts a monomeric form in vitro, but acts as a processive dimer in vivo. KIF1B has alternatively spliced isoforms distinguished by the presence or absence of insertion sequences in the conserved amino-terminal region of the protein; this results in their different motor activities. KIF1A and KIF1B bind to RAB3 proteins through the adaptor protein mitogen-activated protein kinase (MAPK) -activating death domain (MADD; also calledDENN), which was first identified as a RAB3 guanine nucleotide exchange factor (GEF). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 538 GQTMDDL---EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF 594
           G+  DD+   +G T LHLA     + +++LL+  GA+ +  ++   +PLH  ++ G    
Sbjct: 91  GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150

Query: 595 AKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS 636
            +LL+   A     +  G T L +A+     D  +  +L DS
Sbjct: 151 IELLIDHKACLDIEDCCGCTPLIIAM--AKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 45/147 (30%)

Query: 93  AKGKVQTIRQGYLSKR---SSNL-RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSS 148
            + K + ++ G+L K+   SS L R +WK R+FVL    + YY   Q             
Sbjct: 1   FRSKQEALKSGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYENDQ------------- 47

Query: 149 QRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP 208
                                     E + A  T+++ ++   VD    +  F   I +P
Sbjct: 48  --------------------------EGAKALGTIDIRSAKEIVDNTPKENGF--DITTP 79

Query: 209 TKNYTLQAESALDQMDWIEKITGVIAS 235
           ++ Y   AES  D   W   +T V ++
Sbjct: 80  SRTYHFVAESPEDASQWFSVLTRVHSA 106

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 41/144 (28%)

Query: 99  TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
            ++ GYL K+    R  WK+R+FVL    + YY                  +N  E    
Sbjct: 6   VLKAGYLEKKGER-RKTWKKRWFVLRPTKLAYY------------------KNDKEYR-- 44

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES 218
            L R +       + D      HT        +V   + D    F I++P + + +QA+S
Sbjct: 45  -LLRLID------LTD-----IHTC------TEVQLKKHD--NTFGIVTPARTFYVQADS 84

Query: 219 ALDQMDWIEKITGVIASLLSSQAP 242
             +   WI  I     +L ++  P
Sbjct: 85  KAEMESWISAINLARQALRATITP 108

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and 3-Phosphoinositides Pleckstrin homology (PH) domain

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 43/130 (33%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
           ++GYL+K+   +  +WK R+FVL  +  L Y+                 R  ++      
Sbjct: 5   KEGYLTKQG-GIVKNWKTRWFVL-RKNELKYF---------------KTRTDTK------ 41

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR-FCFRIISPTKNYTLQAESA 219
                                T++ LT    V AD S  +  CFR++ P + + + A++ 
Sbjct: 42  ------------------PIRTLD-LTECSSVQADYSQGKPNCFRLVFPDRTFYMYAKTE 82

Query: 220 LDQMDWIEKI 229
            +  +W++ +
Sbjct: 83  EEADEWVKLL 92

DAPP1 (also known as PHISH/3' phosphoinositide-interacting SH2 domain-containing protein or Bam32) plays a role in B-cell activation and has potential roles in T-cell and mast cell function. DAPP1 promotes B cell receptor (BCR) induced activation of Rho GTPases Rac1 and Cdc42, which feed into mitogen-activated protein kinases (MAPK) activation pathways and affect cytoskeletal rearrangement. DAPP1can also regulate BCR-induced activation of extracellular signal-regulated kinase (ERK), and c-jun NH2-terminal kinase (JNK). DAPP1 contains an N-terminal SH2 domain and a C-terminal pleckstrin homology (PH) domain with a single tyrosine phosphorylation site located centrally. DAPP1 binds strongly to both PtdIns(3,4,5)P3 and PtdIns(3,4)P2. The PH domain is essential for plasma membrane recruitment of PI3K upon cell activation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 28/90 (31%), Positives = 43/90 (47%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           ++D  GC  +H+A       +++LLL+ GA  N  D+ G +PLH     G     KLL+ 
Sbjct: 152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID 211

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVL 630
            G       + G T L  A+  N +  E+L
Sbjct: 212 HGNHIMNKCKNGFTPLHNAIIHNRSAIELL 241

Length = 434

>gnl|CDD|241401 cd13247, BAR-PH_APPL, Adaptor protein containing PH domain, PTB domain, and Leucine zipper motif Bin1/amphiphysin/Rvs167 (BAR)-Pleckstrin homology (PH) domain

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 194 ADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIA 234
           AD  D RF F+I SP   K   LQAES  D+ +WI  I  +  
Sbjct: 82  ADCEDRRFVFQITSPDGKKAIVLQAESEKDREEWIATINNISQ 124

APPL (also called DCC-interacting protein (DIP)-13alpha) interacts with oncoprotein serine/threonine kinase AKT2, tumor suppressor protein DCC (deleted in colorectal cancer), Rab5, GIPC (GAIP-interacting protein, C terminus), human follicle-stimulating hormone receptor (FSHR), and the adiponectin receptors AdipoR1 and AdipoR2. There are two isoforms of human APPL: APPL1 and APPL2, which share about 50% sequence identity. APPL has a BAR and a PH domain near its N terminus, and the two domains are thought to function as a unit (BAR-PH domain). C-terminal to this is a PTB domain. Lipid binding assays show that the BAR, PH, and PTB domains can bind phospholipids. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|153290 cd07606, BAR_SFC_plant, The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 16/21 (76%), Positives = 18/21 (85%)

Query: 1   MDAHLRYFKQGYELLHQMEPY 21
           MDAHL +FK GYELL Q+EPY
Sbjct: 182 MDAHLAFFKSGYELLRQLEPY 202

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 202

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 34/129 (26%), Positives = 47/129 (36%), Gaps = 45/129 (34%)

Query: 103 GYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSR 162
           G+L KRS      WK+R+FVL         R           QLS  ++  E        
Sbjct: 10  GWLLKRSRK-TKTWKKRWFVL---------RP---------CQLSYYKDEKE-------- 42

Query: 163 WLSSHYHGGVHDEKSAARHTVNL--LTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAL 220
                            R  +NL  LT+   +   +    F   I +P+KNY  QA S  
Sbjct: 43  --------------YKLRRVINLSELTAVAPLKDKKRKNVFA--IYTPSKNYHFQASSEK 86

Query: 221 DQMDWIEKI 229
           D  +W+E I
Sbjct: 87  DANEWVEAI 95

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241420 cd13266, PH_Skap_family, Src kinase-associated phosphoprotein family Pleckstrin homology (PH) domain

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 41/141 (29%)

Query: 100 IRQGYLSKRS---SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELG 156
           ++QGYL KR    S    +W++R+ VL S    YYY          GS+   Q+      
Sbjct: 2   LKQGYLEKRRKDHSFFGSEWQKRWCVL-SNTAFYYY----------GSEKDKQQKGEFAI 50

Query: 157 SGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN-YTLQ 215
            G  +R                       +  T++ D+ +     CF I +P K  Y   
Sbjct: 51  DGYRAR-----------------------MNPTLRKDSKKDC---CFEISAPDKRVYQFT 84

Query: 216 AESALDQMDWIEKITGVIASL 236
           A S  +  +W+++I  ++  L
Sbjct: 85  AASPKEAREWVDQIKFLLKDL 105

Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Src kinase-associated phosphoprotein of 55 kDa (Skap55)/Src kinase-associated phosphoprotein 1 (Skap1), Skap2, and Skap-homology (Skap-hom) have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 543 DLEGCTLLH--LACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKL--L 598
           DL G T L   L   +A++ +L LL+  GA++ A D R  + LH  +   K     +  L
Sbjct: 149 DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVREL 208

Query: 599 LTRGADPRAVNREGKTSL-ELAVESNFADSEVL 630
           +  G DP A +  G T L  +A  S+   S VL
Sbjct: 209 IRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL 241

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH-----RCILRGKAMFAKLLLTR 601
              L+LA ++ +I ++++LL  GA+IN++     TPLH     +  L       KLLL  
Sbjct: 36  VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY 95

Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAILSD 635
           GA+  A +  G T L  A+        ++  L D
Sbjct: 96  GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD 129

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 5/115 (4%)

Query: 513 SSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLE----GCTLLHLACDSADIGMLELLLQY 568
           S S+L   +        + L         +  +        L L   ++    L L L  
Sbjct: 4   SLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSE-LLLKLIV 62

Query: 569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
             ++ A D  G  PLH    +G     KLLL  GAD  A + +G T L LA  + 
Sbjct: 63  DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNG 117

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKL 597
           QT+D +          D  +  + +LLL YGA+IN  D  +G T LH           +L
Sbjct: 129 QTIDLVYIDKKSKD--DIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTEL 186

Query: 598 LLTRGADPRAVNREGKTSLELAV 620
           LL+ GA+    ++   + L  AV
Sbjct: 187 LLSYGANVNIPDKTNNSPLHHAV 209

Length = 477

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 547 CTLLHLACD-SADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM----FAKLLLTR 601
           CT+L    D    + ++++L++ GA+IN  +S G TPL+ C+L    +        ++  
Sbjct: 76  CTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLY-CLLSNGYINNLEILLFMIEN 134

Query: 602 GADPRAVNREGKTSLELAVESN-FADSEVLAILSDS 636
           GAD   ++++G T L++ ++SN   D E++ +L + 
Sbjct: 135 GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170

Length = 489

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 23/93 (24%), Positives = 38/93 (40%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LH+AC +  + ++ +LL++GA+    D  G TPL      G     +LL    
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHS 171

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSD 635
                +    K         +  DS + +   D
Sbjct: 172 QCHFELGANAKPDSFTGKPPSLEDSPISSHHPD 204

Length = 664

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 98  QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSG----SGSQLSS 148
             +++G+L K+   +  +WK R+FVL    + YY +K  S   G     G  ++S
Sbjct: 2   GVLKEGFLVKKGH-VVNNWKARWFVLLEDKLEYYKKKTDSSPKGMILLKGCTITS 55

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241423 cd13269, PH_alsin, Alsin Pleckstrin homology (PH) domain

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG 231
           VH + S   H   L T  ++   D+   +   +I +P +++TL A +  ++ +W+  I  
Sbjct: 40  VHAQFSTH-HIFPLATLWVEPIPDEDSGQNALKITTPEESFTLVASTPQEKAEWLRAINQ 98

Query: 232 VIASLLS 238
            I   L+
Sbjct: 99  AIDQALN 105

The ALS2 gene encodes alsin, a GEF, that has dual specificity for Rac1 and Rab5 GTPases. Alsin mutations in the form of truncated proteins are responsible for motor function disorders including juvenile-onset amyotrophic lateral sclerosis, familial juvenile primary lateral sclerosis, and infantile-onset ascending hereditary spastic paralysis. The alsin protein is widely expressed in the developing CNS including neurons of the cerebral cortex, brain stem, spinal cord, and cerebellum. Alsin contains a regulator of chromosome condensation 1 (RCC1) domain, a Rho guanine nucleotide exchanging factor (RhoGEF) domain, a PH domain, a Membrane Occupation and Recognition Nexus (MORN), a vacuolar protein sorting 9 (Vps9) domain, and a Dbl homology (DH) domain. Alsin interacts with Rab5 through its Vps9 domain and through this interaction modulates early endosome fusion and trafficking. The GEF activity of alsin towards Rab5 is regulated by Rac1 function. The GEF activity of alsin for Rac1 occurs via its DH domain and this interaction plays a role in promoting spinal motor neuron survival via multiple Rac-dependent signaling pathways. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 45/128 (35%)

Query: 103 GYLSKRS--SNLRGDWKRRFFVLD-SRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           GYL+K      L+  WK R+FV D  +  LYYYR              S ++ + LGS  
Sbjct: 4   GYLNKLETKGLLKT-WKSRWFVFDERKCQLYYYR--------------SPQDITPLGS-- 46

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
                                  ++L  +    D +       F I +P + Y L+A   
Sbjct: 47  -----------------------IDLSGAAFSYDPEAEK--GTFEIHTPGRVYILKASDR 81

Query: 220 LDQMDWIE 227
              + W++
Sbjct: 82  QAMLYWLQ 89

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241253 cd01218, PH_Phafin2-like, Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT 230
             + L    I+   D  +L+  ++IISP K++ + A +A ++ +W++ I 
Sbjct: 72  RIIPLEDVKIEDLEDTGELKNGWQIISPKKSFVVYAATATEKSEWMDHIN 121

Phafin2 is differentially expressed in the liver cancer cell and regulates the structure and function of the endosomes through Rab5-dependent processes. Phafin2 modulates the cell's response to extracellular stimulation by modulating the receptor density on the cell surface. Phafin2 contains a PH domain and a FYVE domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 100 IRQGYLSKR-SSNLRGDWKRRFFVLDSRGMLYYYR 133
           +  G+L K+  S L+  WK+R+FVL     LYYY+
Sbjct: 8   VFSGWLHKQGGSGLKN-WKKRWFVLKDNC-LYYYK 40

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|241531 cd13380, PH_Skap1, Src kinase-associated phosphoprotein 1 Pleckstrin homology (PH) domain

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 41/134 (30%)

Query: 100 IRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELG 156
            +QGYL KRS +      +W++R+ VL      YYY  + SK                  
Sbjct: 2   FKQGYLEKRSKDHGFFGSEWQKRWCVLT-TRAFYYYANEKSK------------------ 42

Query: 157 SGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN-YTLQ 215
                        GG   + S A+     +   ++ D+ +     CF + +P +  Y   
Sbjct: 43  ----------QPKGGFLIKDSLAQ-----MAPHLRKDSRRDS---CFELTTPNQRTYEFT 84

Query: 216 AESALDQMDWIEKI 229
           A S  +  DW+++I
Sbjct: 85  AASPSEARDWVDQI 98

Adaptor protein Skap1 (also called Skap55/Src kinase-associated phosphoprotein of 55 kDa) and its partner, ADAP (adhesion and degranulation promoting adapter protein) help reorganize the cytoskeleton and/or promote integrin-mediated adhesion upon immunoreceptor activation. Skap1 is also involved in T Cell Receptor (TCR)-induced RapL-Rap1 complex formation and LFA-1 activation. Skap1 has an N-terminal coiled-coil conformation which is proposed to be involved in homodimer formation, a central PH domain and a C-terminal SH3 domain that associates with ADAP. The Skap1 PH domain plays a role in controlling integrin function via recruitment of ADAP-SKAP complexes to integrins as well as in controlling the ability of ADAP to interact with the CBM signalosome and regulate NF-kappaB. SKAP1 is necessary for RapL binding to membranes in a PH domain-dependent manner and the PI3K pathway. Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Skap55/Skap1, Skap2, and Skap-homology (Skap-hom) have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241446 cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol binding protein homologs 1 and 2 Pleckstrin homology (PH) domain

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 45/132 (34%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
            +GYL K + N    +K R+FVL+  G+L YYR Q                         
Sbjct: 4   MKGYLKKWT-NYAKGYKTRWFVLED-GVLSYYRHQ------------------------- 36

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYT---LQAE 217
                        DE SA R ++N+  + +  D  +  LR  F + S T       L+A 
Sbjct: 37  ------------DDEGSACRGSINMKNARLVSDPSE-KLR--FEVSSKTSGSPKWYLKAN 81

Query: 218 SALDQMDWIEKI 229
             ++   WI+ +
Sbjct: 82  HPVEAARWIQAL 93

Yeast Osh1p is proposed to function in postsynthetic sterol regulation, piecemeal microautophagy of the nucleus, and cell polarity establishment. Yeast Osh2p is proposed to function in sterol metabolism and cell polarity establishment. Both Osh1p and Osh2p contain 3 N-terminal ankyrin repeats, a PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBP andOsh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 579 GLTPLHRCILRGKAMFAKLLLTRGADPRAVNR 610
           G TPLH     G     KLLL  GAD  A ++
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYY 131
           I+ GY  K+   +R +WKRR+F+LD   + YY
Sbjct: 9   IKSGYCVKQG-AVRKNWKRRYFILDDNTISYY 39

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241431 cd13277, PH_Bem3, Bud emergence protein 3 (Bem3) Pleckstrin homology (PH) domain

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 99  TIRQGYLSKRSSNLRGD---WKRRFFVLDSRGMLYYYRKQCSKSSGS----GSQLSSQRN 151
           ++++GYL KR     G    WK R+ VLD   +L  Y  +  +   S     +Q+  Q N
Sbjct: 3   SVKEGYLLKRRKKTLGSTGGWKLRYGVLDG-NILELYESRGGQLLESIKLRNAQIERQPN 61

Query: 152 SSE 154
             +
Sbjct: 62  LPD 64

Bud emergence in Saccharomyces cerevisiae involves cell cycle-regulated reorganizations of cortical cytoskeletal elements and requires the action of the Rho-type GTPase Cdc42. Bem3 contains a RhoGAP domain and a PH domain. Though Bem3 and Bem2 both contain a RhoGAP, but only Bem3 is able to stimulate the hydrolysis of GTP on Cdc42. Bem3 is thought to be the GAP for Cdc42. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 102 QGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYY 132
           +GYL KR + L+G WK+R+FVLD  +  L YY
Sbjct: 6   EGYLYKRGALLKG-WKQRWFVLDLTKHQLRYY 36

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.2 bits (99), Expect = 9e-04
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 549 LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV 608
           LL  A    D+  ++ LL+ G N+++ D +G T L   +        +LL+  GAD    
Sbjct: 625 LLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA 684

Query: 609 N-REGKTSLEL 618
           N  +  +  EL
Sbjct: 685 NTDDDFSPTEL 695

Length = 823

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGS 142
           I++GYL K+   L   W+ R+FVL    + YY  +   +  G 
Sbjct: 9   IKKGYLWKKGH-LLPTWRERWFVLKPNSLSYYKSEDLKEKKGE 50

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241281 cd01250, PH_AGAP, Arf-GAP with GTPase, ANK repeat and PH domain-containing protein Pleckstrin homology (PH) domain

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 100 IRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYY 132
           I+QGYL KRSS  L  +WK+++  L   G L Y+
Sbjct: 5   IKQGYLYKRSSKSLNKEWKKKYVTLCDDGRLTYH 38

AGAP (also called centaurin gamma; PIKE/Phosphatidylinositol-3-kinase enhancer) reside mainly in the nucleus and are known to activate phosphoinositide 3-kinase, a key regulator of cell proliferation, motility and vesicular trafficking. There are 3 isoforms of AGAP (PIKE-A, PIKE-L, and PIKE-S) the longest of which PIKE-L consists of N-terminal proline rich domains (PRDs), followed by a GTPase domain, a split PH domain (PHN and PHC), an ArfGAP domain and two ankyrin repeats. PIKE-S terminates after the PHN domain and PIKE-A is missing the PRD region. Centaurin binds phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 552 LACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK---LLLTRGADPRAV 608
           L   +  +  +  LL  GA++N     G TPLH  +            LLL  GAD  A 
Sbjct: 20  LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP 79

Query: 609 NREGKTSLELAVESN 623
            R G T L L + + 
Sbjct: 80  ERCGFTPLHLYLYNA 94

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH 584
              LH A ++ ++ +++ LL  G N+N  D R LTPLH
Sbjct: 38  FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLH 75

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPL------HRCILRGKAMFAKLLL 599
           G T LH +  S     L+LLL+YGA+IN+ +S  LTPL      + CI  G+ + + + L
Sbjct: 269 GLTALHSSIKSERK--LKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNICL 326

Query: 600 TRGADPRAVNREG 612
            +   P   N EG
Sbjct: 327 LKRIKPDIKNSEG 339

Length = 477

>gnl|CDD|241405 cd13251, PH_ASAP, ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 173 HDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWI 226
           H +++     +NLLT  +K + +    + CF +IS  + Y  QAE   +   WI
Sbjct: 44  HSDENKPPVKLNLLTCQVKPNPED---KKCFDLISHNRTYHFQAEDEQEAEAWI 94

ASAPs (ASAP1, ASAP2, and ASAP3) function as an Arf-specific GAPs, participates in rhodopsin trafficking, is associated with tumor cell metastasis, modulates phagocytosis, promotes cell proliferation, facilitates vesicle budding, Golgi exocytosis, and regulates vesicle coat assembly via a Bin/Amphiphysin/Rvs domain. ASAPs contain an NH2-terminal BAR domain, a tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 (SH3) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 54/149 (36%)

Query: 99  TIRQGYLSKRSSNLRGDWKRRFFVLDSRG-MLYYYRKQCSKSSGSGSQLSSQRNSSELGS 157
            I+ G+L K+   ++ +W+RR+FVL  RG  LYYY+                        
Sbjct: 3   VIKSGWLKKQGGIVK-NWQRRWFVL--RGDQLYYYKD----------------------- 36

Query: 158 GLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDL--RFCFRII------SPT 209
                           +++S  +  + L  +T+K      +   +F F II        +
Sbjct: 37  ----------------EDESKPQGCIPLPGNTVKELPFNPEEPGKFLFEIIPGDGGTRRS 80

Query: 210 KN---YTLQAESALDQMDWIEKITGVIAS 235
            N   Y L A S  +  +W++ I  VI S
Sbjct: 81  ANHDSYLLMANSQAEMEEWVKVIRRVIGS 109

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 549 LLHLAC--DSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR 606
           +LH  C     D   +E LL  G + N TD  G  PLH            +LLT GADP 
Sbjct: 40  ILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPN 99

Query: 607 AVNREGKTSL 616
           A +++ KT L
Sbjct: 100 ACDKQHKTPL 109

Length = 446

>gnl|CDD|241419 cd13265, PH_evt, Evectin Pleckstrin homology (PH) domain

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 99  TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 135
            ++ G+L ++S+ L+  WK+ +FVL S G L YY  +
Sbjct: 3   LVKSGWLLRQSTILK-RWKKNWFVLYSDGELSYYEDE 38

There are 2 members of the evectin family (also called pleckstrin homology domain containing, family B): evt-1 (also called PLEKHB1) and evt-2 (also called PLEKHB2). evt-1 is specific to the nervous system, where it is expressed in photoreceptors and myelinating glia. evt-2 is widely expressed in both neural and nonneural tissues. Evectins possess a single N-terminal PH domain and a C-terminal hydrophobic region. evt-1 is thought to function as a mediator of post-Golgi trafficking in cells that produce large membrane-rich organelles. It is a candidate gene for the inherited human retinopathy autosomal dominant familial exudative vitreoretinopathy and a susceptibility gene for multiple sclerosis. evt-2 is essential for retrograde endosomal membrane transport from the plasma membrane (PM) to the Golgi. Two membrane trafficking pathways pass through recycling endosomes: a recycling pathway and a retrograde pathway that links the PM to the Golgi/ER. Its PH domain that is unique in that it specifically recognizes phosphatidylserine (PS), but not polyphosphoinositides. PS is an anionic phospholipid class in eukaryotic biomembranes, is highly enriched in the PM, and plays key roles in various physiological processes such as the coagulation cascade, recruitment and activation of signaling molecules, and clearance of apoptotic cells. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 32/138 (23%), Positives = 44/138 (31%), Gaps = 36/138 (26%)

Query: 96  KVQTIRQGYLSKRSSNLR-GDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSE 154
           KVQ    G L KR    +   W +RFFVL    +LYY                     SE
Sbjct: 11  KVQ--LSGVLWKRPFGRQSAKWSKRFFVLKECFLLYY-------------------AESE 49

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP--TKNY 212
                 +R  + H  G            V  L              +CF I  P    + 
Sbjct: 50  KKDFEKTRRFNIHPKG------------VIPLGGCSIEAGRDPGRPYCFLISHPDFKGSI 97

Query: 213 TLQAESALDQMDWIEKIT 230
            L A+S  +Q  W++ + 
Sbjct: 98  ILAADSEEEQESWLDMLR 115

Human PLEKHD1 (also called UPF0639, pleckstrin homology domain containing, family D (with M protein repeats) member 1) is a single transcript and contains a single PH domain. PLEKHD1 is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, and Caenorhabditis elegans. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 579 GLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           G T LH+  + G+    K LL +G D    + +G T+L +A E    + EVL +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE--NGNLEVLKLL 53

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	638
KOG0521	785	consensus Putative GTPase activating proteins (GAP	100.0
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	100.0
KOG0703	287	consensus Predicted GTPase-activating protein [Sig	100.0
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	100.0
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	100.0
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	100.0
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	99.97
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	99.97
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	99.96
PLN03131	705	hypothetical protein; Provisional	99.95
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	99.93
KOG0704	386	consensus ADP-ribosylation factor GTPase activator	99.92
KOG0706	454	consensus Predicted GTPase-activating protein [Sig	99.92
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.9
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.85
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	99.84
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.83
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.83
PHA02791	284	ankyrin-like protein; Provisional	99.82
PHA02875	413	ankyrin repeat protein; Provisional	99.82
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.8
PHA02875	413	ankyrin repeat protein; Provisional	99.8
PHA02989	494	ankyrin repeat protein; Provisional	99.79
PHA02878	477	ankyrin repeat protein; Provisional	99.79
PHA02859	209	ankyrin repeat protein; Provisional	99.79
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.79
PHA03095	471	ankyrin-like protein; Provisional	99.79
KOG0508	615	consensus Ankyrin repeat protein [General function	99.78
KOG0508	615	consensus Ankyrin repeat protein [General function	99.78
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.78
PHA02795	437	ankyrin-like protein; Provisional	99.78
PHA02791	284	ankyrin-like protein; Provisional	99.78
PHA02874	434	ankyrin repeat protein; Provisional	99.77
PHA03100	480	ankyrin repeat protein; Provisional	99.77
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.77
PHA03100	480	ankyrin repeat protein; Provisional	99.77
PHA02917	661	ankyrin-like protein; Provisional	99.77
PHA03095	471	ankyrin-like protein; Provisional	99.77
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.76
PHA02874	434	ankyrin repeat protein; Provisional	99.76
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.76
PHA02878	477	ankyrin repeat protein; Provisional	99.76
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.76
PHA02946	446	ankyin-like protein; Provisional	99.76
PHA02743	166	Viral ankyrin protein; Provisional	99.76
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.76
PHA02859	209	ankyrin repeat protein; Provisional	99.75
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.75
PHA02989	494	ankyrin repeat protein; Provisional	99.75
PHA02876	682	ankyrin repeat protein; Provisional	99.75
PHA02798	489	ankyrin-like protein; Provisional	99.75
PHA02946	446	ankyin-like protein; Provisional	99.74
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.73
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.73
PHA02798	489	ankyrin-like protein; Provisional	99.72
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.71
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.7
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.7
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.7
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	99.69
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.69
KOG0510	929	consensus Ankyrin repeat protein [General function	99.69
PHA02741	169	hypothetical protein; Provisional	99.69
KOG0514	452	consensus Ankyrin repeat protein [General function	99.68
PHA02876	682	ankyrin repeat protein; Provisional	99.68
PHA02917	661	ankyrin-like protein; Provisional	99.68
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.67
PHA02884	300	ankyrin repeat protein; Provisional	99.67
PHA02795	437	ankyrin-like protein; Provisional	99.67
PHA02730	672	ankyrin-like protein; Provisional	99.66
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.66
PHA02730	672	ankyrin-like protein; Provisional	99.66
PHA02736	154	Viral ankyrin protein; Provisional	99.65
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.65
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.65
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.64
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.62
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.62
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.62
PHA02743	166	Viral ankyrin protein; Provisional	99.62
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.62
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
KOG0510	929	consensus Ankyrin repeat protein [General function	99.6
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.59
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.58
PHA02741	169	hypothetical protein; Provisional	99.58
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.57
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.57
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.57
KOG0514	452	consensus Ankyrin repeat protein [General function	99.56
KOG0930	395	consensus Guanine nucleotide exchange factor Cytoh	99.53
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.52
PHA02792	631	ankyrin-like protein; Provisional	99.52
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.52
PHA02884	300	ankyrin repeat protein; Provisional	99.51
PF15409	89	PH_8: Pleckstrin homology domain	99.51
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.51
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.51
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.5
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.49
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.48
PHA02792	631	ankyrin-like protein; Provisional	99.46
PHA02736	154	Viral ankyrin protein; Provisional	99.42
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.42
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.41
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.38
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.38
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.37
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.37
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.37
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.36
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.34
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.31
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.3
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.28
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.27
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.26
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.23
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.19
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.19
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.15
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.13
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.12
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.07
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.07
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.06
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.04
KOG0702	524	consensus Predicted GTPase-activating protein [Sig	99.02
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.97
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	98.97
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.93
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.9
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.89
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	98.83
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	98.82
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.78
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.72
KOG1090	1732	consensus Predicted dual-specificity phosphatase [	98.71
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	98.65
PF13606	30	Ank_3: Ankyrin repeat	98.58
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.53
PF13606	30	Ank_3: Ankyrin repeat	98.52
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.51
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	98.49
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.47
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.46
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.42
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.38
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.37
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	98.33
KOG0522	560	consensus Ankyrin repeat protein [General function	98.18
KOG0932	774	consensus Guanine nucleotide exchange factor EFA6	98.07
KOG2384	223	consensus Major histocompatibility complex protein	98.07
PTZ00267	478	NIMA-related protein kinase; Provisional	98.07
KOG3751	622	consensus Growth factor receptor-bound proteins (G	98.03
KOG2384	223	consensus Major histocompatibility complex protein	98.01
KOG0511	516	consensus Ankyrin repeat protein [General function	98.01
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	97.99
KOG3640	1116	consensus Actin binding protein Anillin [Cell cycl	97.98
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.95
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	97.93
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	97.85
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	97.79
KOG0511	516	consensus Ankyrin repeat protein [General function	97.72
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	97.72
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	97.67
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.65
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.63
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	97.63
PTZ00283	496	serine/threonine protein kinase; Provisional	97.55
KOG3723	851	consensus PH domain protein Melted [Signal transdu	97.53
PLN02866	1068	phospholipase D	97.45
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	97.32
KOG1739	611	consensus Serine/threonine protein kinase GPBP [Si	97.31
KOG0248	936	consensus Cytoplasmic protein Max-1, contains PH,	97.31
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	97.29
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.16
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.14
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.07
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	96.99
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	96.86
KOG2505	591	consensus Ankyrin repeat protein [General function	96.49
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	96.47
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.32
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	96.17
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.14
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	96.0
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.93
KOG2505	591	consensus Ankyrin repeat protein [General function	95.72
PF15404	185	PH_4: Pleckstrin homology domain	95.63
KOG3531	1036	consensus Rho guanine nucleotide exchange factor C	95.58
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	95.44
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	95.34
PF15406	112	PH_6: Pleckstrin homology domain	95.17
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	94.94
KOG1737	799	consensus Oxysterol-binding protein [Lipid transpo	94.12
PF15408	104	PH_7: Pleckstrin homology domain	94.11
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	92.61
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	91.18
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.82
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	89.38
KOG0248	936	consensus Cytoplasmic protein Max-1, contains PH,	89.27
KOG3531	1036	consensus Rho guanine nucleotide exchange factor C	88.27
cd05135	333	RasGAP_RASAL Ras GTPase activating-like protein (R	88.1
cd05394	313	RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the	86.65
cd05128	315	RasGAP_GAP1_like The GAP1 family of Ras GTPase-act	84.73
KOG2070	661	consensus Guanine nucleotide exchange factor [Nucl	83.9
cd05134	310	RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of	83.02
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	82.35
KOG1729	288	consensus FYVE finger containing protein [General	80.65

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-67  Score=589.55  Aligned_cols=510  Identities=42%  Similarity=0.644  Sum_probs=365.0

Q ss_pred             ChhhhhHHHhHHHHHhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCccccccc
Q 006616            1 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRS   80 (638)
Q Consensus         1 ~~a~~~ff~~G~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (638)
                      ||||++||++||+++.+|+||++++.+++++++++++.+++.|++++++++.+.+...+....  ...|.+.        
T Consensus       199 ~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~~q~l~~~~~~~~~~~~~--~~~~~~~--------  268 (785)
T KOG0521|consen  199 MHAQINFFKQGEDLLSQMDPYIKKVATYVQQLREESDAEQRAMEQRYQELRSASNLESRPKSD--SASPSGG--------  268 (785)
T ss_pred             HHhccchhcccHhHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhcccc--ccccccc--------
Confidence            799999999999999999999999999999999999999999999999999987766555211  1122221        


Q ss_pred             hhHHHHHHHhhhcCCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCcc
Q 006616           81 SHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL  160 (638)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~  160 (638)
                                   +......+.|||+|+.++..++|+||||.++ ++.+.|.......                      
T Consensus       269 -------------~~~~~~~~~~~l~~k~~~~~~tw~r~~f~~q-~~~l~~~~r~~~~----------------------  312 (785)
T KOG0521|consen  269 -------------NLKLGYRMEGYLRKKASNASKTWKRRWFSIQ-DGQLGYQHRGADA----------------------  312 (785)
T ss_pred             -------------cccchhhhhhhhhhhcccchhhHHhhhhhhh-ccccccccccccc----------------------
Confidence                         1223334689999999988999999999998 4444443332110                      


Q ss_pred             ccccccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhccC
Q 006616          161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ  240 (638)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~  240 (638)
                                     ..  ....+|.+|+|++.++..++||||+|++|+|+|+|||+|+.|.++||.+|+++|.++++..
T Consensus       313 ---------------~~--~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~  375 (785)
T KOG0521|consen  313 ---------------EN--VLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSALNSA  375 (785)
T ss_pred             ---------------cc--cccccchhccccCCcccccceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHHhcc
Confidence                           00  2236899999999888789999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCcchhhhhhccccccccccccccccccccccccCCchHHHHHHcccCCc
Q 006616          241 APERCLPTSP-MGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGND  319 (638)
Q Consensus       241 ~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  319 (638)
                      .++...+... .+..+..+.+         .....+..         ...++          ..+...++..+++.|||.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~s---------~~~~~s~~---------~s~~~----------~~~~~~~~~~vq~~pgN~  427 (785)
T KOG0521|consen  376 FLGQDSTGGRNTQSGHSSSAS---------YSTITSAN---------TSRER----------LNKGISVIEEVQSVPGNA  427 (785)
T ss_pred             CcccccccCCCcccccccccc---------cccccccc---------ccccc----------cccCcchhhhhhcCCchh
Confidence            7765433211 1111111111         00000000         00000          011223578899999999


Q ss_pred             ccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHHHHhhhccccccc
Q 006616          320 RCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFH  399 (638)
Q Consensus       320 ~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~~~~~~  399 (638)
                      .|||||++.|+|+|+|+||.+||+|||+||+||||+|||||||||  .|+++.+.+++++||..+|.|||+.++.-.   
T Consensus       428 ~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD--~~~~~l~~l~~~lgn~~~N~i~e~~l~~~~---  502 (785)
T KOG0521|consen  428 QCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLD--VWEPELLLLFKNLGNKYVNEIYEALLPSYD---  502 (785)
T ss_pred             hhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhh--ccCcHHHHHHHHhCcchhhhhhhccccccc---
Confidence            999999999999999999999999999999999999999999999  599999999999999999999999998721   


Q ss_pred             cCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCcccc--c--------------ccccceecc
Q 006616          400 VDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYL--H--------------SVAHQIWEG  463 (638)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~~~~--~--------------~~~~~L~~A  463 (638)
                                        ..+|.+..++..|++||++||+++.|....+.....  .              ....+++.+
T Consensus       503 ------------------~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (785)
T KOG0521|consen  503 ------------------SSKPTASSSRQAREAWIKAKYVERRFSVKEPQIKRLYLERLLEAIKSILESASASGVQISEG  564 (785)
T ss_pred             ------------------ccCCCCccchhhhhHhhhcccceeeEeecccchhhhhhhhhhhhhhhhhhhhhhhhhhHhhc
Confidence                              358888888999999999999999999876654311  1              112233444


Q ss_pred             cccccchh-hhhhhcccccCccccccchhc----------cchhhH---HHHHhhhhccccCCCcccccccccCCccccc
Q 006616          464 VRTNDKKA-VYRHIVNFEVDVNAVYEQVSC----------ISSLTL---AKAMLLNEQTSLERSSSSLTGNSSDRSSSGS  529 (638)
Q Consensus       464 v~~~d~~~-v~~lLl~~gaDvN~~~~~~~~----------~~~~~l---~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~  529 (638)
                      +..+.... |..++.....|.+........          ..+.+.   .+..+...       .+..............
T Consensus       565 ~~~~~~~~~v~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~h~e~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~  637 (785)
T KOG0521|consen  565 VSGSSREETVYHLIVSTLNDASIRSADFSVPDKSSADGSTTLHYEILECLKLLLFIK-------ELLVKASSDGECLPRI  637 (785)
T ss_pred             cccCCccccceeeeccCcccccccccccccccccccccccccchhhhhccccccchH-------HHHHHhccCccchhhh
Confidence            43333333 555554443344443332111          111111   00000000       0000000000000001


Q ss_pred             ccccCCCCCCCc--CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          530 LNLAGTSEGQTM--DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       530 ~lL~~~~~~~~~--~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      -.-...++++|.  .-..|.|+||.|+..|...++++||++|+++|..|..|+||||.+...|+...+.+|+++||++++
T Consensus       638 ~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a  717 (785)
T KOG0521|consen  638 ATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA  717 (785)
T ss_pred             hhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc
Confidence            111122333332  234589999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHH
Q 006616          608 VNREGKTSLELAVESNFADSEVLA  631 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~  631 (638)
                      .+.+|.+||++|....+.|...+.
T Consensus       718 ~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  718 FDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cCccCcchhhHHhhhccccHHHHH
Confidence            999999999999888665544333

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-61  Score=497.58  Aligned_cols=383  Identities=32%  Similarity=0.540  Sum_probs=286.0

Q ss_pred             HHHhhhcCCCcceeEEEEEEeecCCCC-CCceeeEEEEecCceEEEEecCCC------------------CCCCCCCccc
Q 006616           87 AVMQSAAKGKVQTIRQGYLSKRSSNLR-GDWKRRFFVLDSRGMLYYYRKQCS------------------KSSGSGSQLS  147 (638)
Q Consensus        87 ~~~~~~~~~~~~~~k~GyL~Kr~~~~~-~~WkrRwfvL~~~~~l~y~~~~~~------------------~~~g~~~~~~  147 (638)
                      .....++.|+..|||||.|+||+++.. +.|||.|.+|.++|+|.||..-.+                  .|........
T Consensus       290 ~~adtigsGRAIPIKQg~LlKrSgk~L~keWKKKYVtlcsnG~LtYh~sL~dYM~niHgKEiDL~~tTikvpGK~pplat  369 (749)
T KOG0705|consen  290 NHADTIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCSNGVLTYHPSLGDYMKNIHGKEIDLLRTTIKVPGKRPPLAT  369 (749)
T ss_pred             hhhhhhcCCcccchhhhhHHHhcchHHHHHHhhhheeeccCcceeecccHHHHHHhcccceeeeeeeeeeccCccCcccc
Confidence            334456778899999999999998855 899999999999999999965110                  0000000000


Q ss_pred             cc--cCcCcccCCcccccc---------cccc--CCCCCC----------ccccc----cceeecccceeecCCCCCCCc
Q 006616          148 SQ--RNSSELGSGLLSRWL---------SSHY--HGGVHD----------EKSAA----RHTVNLLTSTIKVDADQSDLR  200 (638)
Q Consensus       148 ~~--~~~~~~~~g~~~~~~---------~~~~--~~~~~~----------~~~~~----~~~i~l~~~~v~~~~~~~~rr  200 (638)
                      ..  ..+...-.|++--+-         .+..  .|++.+          .+++.    ++.....+.+.+  .+  +..
T Consensus       370 sa~ap~Ss~~~NGl~Kdm~~~rSd~Gl~ss~~~Spgsissaittspkl~pPpSp~~nkKkh~RKksTnskh--nd--EEd  445 (749)
T KOG0705|consen  370 SACAPSSSSKSNGLSKDMEPRRSDVGLGSSDCTSPGSISSAITTSPKLHPPPSPHANKKKHSRKKSTNSKH--ND--EED  445 (749)
T ss_pred             ccccccccccccccccccccccCCCCCCcccCCCCCCcccccccCccCCCCCCccchhhhhhhhccCCCCC--Cc--ccc
Confidence            00  000111111110000         0000  001100          11111    111111121212  11  336


Q ss_pred             ceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhhh
Q 006616          201 FCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYT  279 (638)
Q Consensus       201 ~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  279 (638)
                      |||.|++.. .+|+|.|.+-+|+++||+||+..|-..|+....  +..       ..                       
T Consensus       446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~ces--sk~-------Ks-----------------------  493 (749)
T KOG0705|consen  446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCES--SKS-------KS-----------------------  493 (749)
T ss_pred             ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhh--hcc-------hh-----------------------
Confidence            999999986 699999999999999999999999766654221  000       00                       


Q ss_pred             ccccccccccccccccccccccccCCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeE
Q 006616          280 SERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVR  359 (638)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvr  359 (638)
                         +.                .++.....++.|+.++||..|+||+.++|.|||+|+|+++||+||||||+||+|+|+||
T Consensus       494 ---~~----------------~sqsea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr  554 (749)
T KOG0705|consen  494 ---RL----------------TSQSEAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVR  554 (749)
T ss_pred             ---cc----------------chhhhHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhh
Confidence               00                00113457889999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCccCHHHHHHHHHhchHHHHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHh
Q 006616          360 SLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYA  439 (638)
Q Consensus       360 sl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~  439 (638)
                      ||.||  .|..|.+.+|.++||+.||+|||.....                       ..||.+++.+++||+||++||+
T Consensus       555 ~LeLD--dWPvEl~~Vm~aiGN~~AN~vWE~~~~G-----------------------~~KPs~~s~REEkErwIr~KYe  609 (749)
T KOG0705|consen  555 SLELD--DWPVELLKVMSAIGNDLANSVWEGSSQG-----------------------QTKPSPDSSREEKERWIRAKYE  609 (749)
T ss_pred             ccccc--cCcHHHHHHHHHhhhhHHHHHhhhhccC-----------------------CcCCCccccHHHHHHHHHHHHH
Confidence            99999  7999999999999999999999985543                       4799999999999999999999


Q ss_pred             hhhhccCCCCcccccccccceecccccccchhhhhhhcccccC--ccccccchhccchhhHHHHHhhhhccccCCCcccc
Q 006616          440 EKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVD--VNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSL  517 (638)
Q Consensus       440 ~k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lLl~~gaD--vN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l  517 (638)
                      ++.|+.+.+...  .++.++|+.|+...|+..++-|| .+|..  +|...                              
T Consensus       610 qklFLaPl~~te--~~lgqqLl~A~~~~Dl~t~~lLL-Ahg~~~e~~~t~------------------------------  656 (749)
T KOG0705|consen  610 QKLFLAPLPCTE--EPLGQQLLRAVAAEDLQTAILLL-AHGSREEVNETC------------------------------  656 (749)
T ss_pred             HHhhcCCCCCCC--CchHHHHHHHHHHHHHHHHHHHH-hccCchhhhccc------------------------------
Confidence            999999999876  68999999999999998877555 66643  33322                              


Q ss_pred             cccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHH
Q 006616          518 TGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKL  597 (638)
Q Consensus       518 ~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~l  597 (638)
                                              .+.+|+||||+||..|++.+.++|+.+|+|+-++|..|+|+|.||-..|..+|+.+
T Consensus       657 ------------------------~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~  712 (749)
T KOG0705|consen  657 ------------------------GEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDV  712 (749)
T ss_pred             ------------------------cCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHH
Confidence                                    24579999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCC
Q 006616          598 LLTRGADPR  606 (638)
Q Consensus       598 Ll~~gad~~  606 (638)
                      ||.+|+..+
T Consensus       713 llq~gcp~e  721 (749)
T KOG0705|consen  713 LLQYGCPDE  721 (749)
T ss_pred             HHHcCCCcc
Confidence            999998643

>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-37  Score=301.43  Aligned_cols=116  Identities=46%  Similarity=0.837  Sum_probs=108.4

Q ss_pred             CchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       305 ~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      ++..+..|.+.|+|..|||||++.|+|||.|||||||+.|+||||+|||||||||||+||  .|++|+|+.|+.+||..|
T Consensus        12 ~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD--~W~~eqv~~m~~~GN~~a   89 (287)
T KOG0703|consen   12 NKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLD--EWTDEQVDFMISMGNAKA   89 (287)
T ss_pred             HHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeecc--ccCHHHHHHHHHHcchhh
Confidence            467888899999999999999999999999999999999999999999999999999999  799999999999999999


Q ss_pred             HHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCC
Q 006616          385 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP  447 (638)
Q Consensus       385 n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~  447 (638)
                      |++||+.+|..                      ..+|.+++   .+|.|||+||+.++|+.+.
T Consensus        90 n~~~ea~~p~~----------------------~~~p~~d~---~~e~FIR~KYE~kkf~~~~  127 (287)
T KOG0703|consen   90 NSYYEAKLPDP----------------------FRRPGPDD---LVEQFIRDKYERKKFLDPE  127 (287)
T ss_pred             hhhccccCCcc----------------------ccCCChHH---HHHHHHHHHHhhhhhccch
Confidence            99999998872                      46777665   8999999999999999875

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-37  Score=312.14  Aligned_cols=212  Identities=34%  Similarity=0.581  Sum_probs=187.9

Q ss_pred             ccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHHHHhhhcc
Q 006616          315 VCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQS  394 (638)
Q Consensus       315 ~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~  394 (638)
                      ...-+.|+|||+++|.|||+|-|+++|.+|..+||+||.|||-||+|.-.  .|+|+.|++...+.|..+|+|||..+-.
T Consensus         5 ~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s--~W~pt~l~~V~tLn~~gaNsIWEh~Lld   82 (669)
T KOG0818|consen    5 LLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHT--PWPPTLLQMVETLNNNGANSIWEHSLLD   82 (669)
T ss_pred             chhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccC--CCCHHHHHHHHHHHhcCcchhhhhhccC
Confidence            34568999999999999999999999999999999999999999999976  7999999999999999999999999987


Q ss_pred             ccccccCCCCCCCCCCCCccccccCCCCCCCCHH-HHHHHHHHHHhhhhhccCCCCcc----cccccccceecccccccc
Q 006616          395 RSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS-VKEKFIHAKYAEKLFVRKPKDNQ----YLHSVAHQIWEGVRTNDK  469 (638)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~-~re~fI~~KY~~k~fv~~~~~~~----~~~~~~~~L~~Av~~~d~  469 (638)
                      +...+.+                ..||.|.|... .++.||++||+...|+.+++...    -..+++++|+..|+.+++
T Consensus        83 ~st~~sg----------------~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~rDdD~~~~~~LsrQLhasvRt~nl  146 (669)
T KOG0818|consen   83 PATIMSG----------------RRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCRDDDSVTAKDLSKQLHSSVRTGNL  146 (669)
T ss_pred             chhhhcc----------------cCCCCCcCCCCccHHHHHHHHHHheeeeccCCCCCcchhhHHHHHHHHHHHhhcccH
Confidence            6544322                57899988876 89999999999999998654332    224678999999999999


Q ss_pred             hhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCCCCCcH
Q 006616          470 KAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTL  549 (638)
Q Consensus       470 ~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~Tp  549 (638)
                      +...++| ..|||+|..+++.                                                       |.||
T Consensus       147 et~LRll-~lGA~~N~~hpek-------------------------------------------------------g~Tp  170 (669)
T KOG0818|consen  147 ETCLRLL-SLGAQANFFHPEK-------------------------------------------------------GNTP  170 (669)
T ss_pred             HHHHHHH-HcccccCCCCccc-------------------------------------------------------CCch
Confidence            9999888 7899999877654                                                       9999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616          550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT  600 (638)
Q Consensus       550 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~  600 (638)
                      ||.|+..|+..-+++|+-+|||++++|..|.||+.+|-..||-++.+-|++
T Consensus       171 LHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  171 LHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             hHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999887766653

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=100.00  E-value=2.2e-35  Score=261.22  Aligned_cols=115  Identities=49%  Similarity=0.910  Sum_probs=95.9

Q ss_pred             hHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHH
Q 006616          307 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS  386 (638)
Q Consensus       307 ~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~  386 (638)
                      ++++.|++.|+|+.|||||+++|+|+|+|||||||++|+|+||+||+|+|+||||+||  .|++++|++|+.+||..+|+
T Consensus         2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d--~w~~~ev~~~~~~GN~~~n~   79 (116)
T PF01412_consen    2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMD--NWSPEEVQRMREGGNKRANS   79 (116)
T ss_dssp             HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS-----HHHHHHHHHSHHHHHHH
T ss_pred             HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccC--CCCHHHHHHHHHHChHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999  79999999999999999999


Q ss_pred             HHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccC
Q 006616          387 VWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRK  446 (638)
Q Consensus       387 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~  446 (638)
                      +||+..++                       ..+|.++++...++.||++||+++.|+.+
T Consensus        80 ~~e~~~~~-----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~  116 (116)
T PF01412_consen   80 IWEANSPP-----------------------PKKPPPSSDQEKREQFIRAKYVEKAFISK  116 (116)
T ss_dssp             HHTTTSTT-----------------------TTTHCTTSHHHHHHHHHHHHHTTHTTS-C
T ss_pred             HHHcCCCC-----------------------CCCCCCCCcHHHHHHHHHHHHHhhhhccC
Confidence            99998332                       35677788889999999999999999853

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=100.00  E-value=5.1e-34  Score=250.70  Aligned_cols=109  Identities=59%  Similarity=0.982  Sum_probs=99.6

Q ss_pred             cCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHHHHhhhccc
Q 006616          316 CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSR  395 (638)
Q Consensus       316 ~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~~  395 (638)
                      |||+.|||||+++|+|+|+|||||||++|||+||+||+|||+||||+||  .|++++|++|+.+||..+|++||+.+++.
T Consensus         1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md--~w~~~~i~~~~~~GN~~~n~~~e~~~~~~   78 (112)
T smart00105        1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD--TWTEEELRLLQKGGNENANSIWESNLDDF   78 (112)
T ss_pred             CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccC--CCCHHHHHHHHHhhhHHHHHHHHhhCCcc
Confidence            6899999999999999999999999999999999999999999999999  79999999999999999999999999862


Q ss_pred             cccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCC
Q 006616          396 SAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK  448 (638)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~  448 (638)
                                            ..+|.+.+....++.||+.||++++|+....
T Consensus        79 ----------------------~~~~~~~~~~~~~~~fI~~KY~~k~f~~~~~  109 (112)
T smart00105       79 ----------------------SLKPPDSDDQQKYESFIAAKYEEKLFVPPES  109 (112)
T ss_pred             ----------------------ccCCCCCchHHHHHHHHHHHHHhhhcccccc
Confidence                                  1344445567899999999999999987754

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=99.97  E-value=5.2e-32  Score=291.45  Aligned_cols=262  Identities=31%  Similarity=0.471  Sum_probs=209.7

Q ss_pred             hcCCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616           92 AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG  171 (638)
Q Consensus        92 ~~~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  171 (638)
                      .+.....|.+.|||.-|      +.|..-|+.-..+.+..|++....+.|               .||            
T Consensus       185 ap~pp~pP~raG~lelr------g~kak~f~~vsp~~vqL~knlq~f~lg---------------igi------------  231 (1186)
T KOG1117|consen  185 APPPPVPPPRAGWLELR------GFKAKLFVAVSPERVQLYKNLQSFPLG---------------IGI------------  231 (1186)
T ss_pred             CCCCCCCCCCccchhcc------ccccceeEEecCceeeeecccccccCC---------------cee------------
Confidence            33444558899999877      244444544445666666766554333               122            


Q ss_pred             CCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 006616          172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPM  251 (638)
Q Consensus       172 ~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~~~~~~~~~~~~  251 (638)
                               .-|.+..|+|+..    ++ ..|++.||.|.|-|.|+++.+++.|+.|+|.+|+..++.            
T Consensus       232 ---------t~I~m~~~nvk~v----dr-~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd------------  285 (1186)
T KOG1117|consen  232 ---------TFIYMEVSNVKEV----DR-RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSD------------  285 (1186)
T ss_pred             ---------EEEeccccccccc----cc-ceeccCCceeeeeeeeccchhhhhhhhccCcccccccCh------------
Confidence                     2266677777742    33 569999999999999999999999999999888654422            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcchhhhhhccccccccccccccccccccccccCCchHHHHHHcccCCcccccCCCCCCCc
Q 006616          252 GSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDW  331 (638)
Q Consensus       252 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~dC~~~~p~w  331 (638)
                                                                            -.....++....|..|||||++.|+|
T Consensus       286 ------------------------------------------------------~evaeriW~ne~nr~cadC~ssrPdw  311 (1186)
T KOG1117|consen  286 ------------------------------------------------------YEVAERIWLNEENRECADCGSSRPDW  311 (1186)
T ss_pred             ------------------------------------------------------HHHHHHHHhccccccccccCCCCCcc
Confidence                                                                  01234567788999999999999999


Q ss_pred             eecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHHHHhhhccccccccCCCCCCCCCCC
Q 006616          332 ASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSD  411 (638)
Q Consensus       332 ~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i~e~~~~~~~~~~~~~~~~~~~~~~  411 (638)
                      ||+||+|+||-.|+|-||+||.-+|||||++||++.|+.+.+++|..+||.++|++|.+++++++..+.+          
T Consensus       312 asiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh~d----------  381 (1186)
T KOG1117|consen  312 ASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLHPD----------  381 (1186)
T ss_pred             cccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccCCC----------
Confidence            9999999999999999999999999999999999999999999999999999999999999986644333          


Q ss_pred             CccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCcccccccccceecccccccchhhhhhhcccccCccccccch
Q 006616          412 KPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV  490 (638)
Q Consensus       412 ~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~  490 (638)
                                   ++.+.|..||..||.+.+|....+......++.++|+.||..-|+..-..+| -.|+|+++-.+++
T Consensus       382 -------------ssp~~r~~fi~~Kykeg~fRk~~~~~~~~sel~kalcaaV~~pdl~etma~l-~sga~v~~f~gd~  446 (1186)
T KOG1117|consen  382 -------------SSPSTRRQFIKEKYKEGKFRKEHPVEICSSELPKALCAAVNVPDLLETMALL-FSGADVMCFTGDP  446 (1186)
T ss_pred             -------------CCcchhhhHHHHHhhccccccccccccccccCChhheeeeeCCchhhHHHHh-hccccceeecCCC
Confidence                         3445699999999999999999988777788999999999998887776666 4699999876665

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=99.97  E-value=9.5e-32  Score=273.38  Aligned_cols=119  Identities=45%  Similarity=0.785  Sum_probs=106.0

Q ss_pred             chHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHH
Q 006616          306 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN  385 (638)
Q Consensus       306 ~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n  385 (638)
                      ..++..|++.++|+.|||||+++|+|+|+||||||||+||||||+|||||||||||+||  .|++++|++|...||..||
T Consensus         8 ~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD--~wt~~~l~~m~~gGN~~a~   85 (319)
T COG5347           8 RKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD--NWTEEELRRMEVGGNSNAN   85 (319)
T ss_pred             HHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecc--cCCHHHHHHHHHhcchhhh
Confidence            46778899999999999999999999999999999999999999999999999999999  7999999999999999999


Q ss_pred             HHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCC
Q 006616          386 SVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP  447 (638)
Q Consensus       386 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~  447 (638)
                      ++||......-                     ..+........+++.||+.||..++|+...
T Consensus        86 ~~~e~~~~~~~---------------------~~~~k~~yd~~v~~~y~~~ky~~~~~~~~~  126 (319)
T COG5347          86 RFYEKNLLDQL---------------------LLPIKAKYDSSVAKKYIRKKYELKKFIDDS  126 (319)
T ss_pred             hHhccCCCccc---------------------ccccccccCHHHHHHHHHHHHHhhhccccc
Confidence            99998765410                     123344556678999999999999999863

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=99.96  E-value=1.6e-29  Score=264.43  Aligned_cols=121  Identities=21%  Similarity=0.463  Sum_probs=106.3

Q ss_pred             cCCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchH
Q 006616          303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA  382 (638)
Q Consensus       303 ~~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~  382 (638)
                      .+++++++.|++.|+|+.|+|||+.+|.|||+|||||||++||||||+||   +|||||+||  .|++++|++|+.+||.
T Consensus         8 ERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG---hRVKSLSLD--kWT~EEVe~Mk~gGN~   82 (648)
T PLN03119          8 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT---HRVKSVSMS--KFTSKEVEVLQNGGNQ   82 (648)
T ss_pred             HHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC---ceeeccccC--CCCHHHHHHHHHhchH
Confidence            35678999999999999999999999999999999999999999999998   599999999  7999999999999999


Q ss_pred             HHHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCc
Q 006616          383 FANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDN  450 (638)
Q Consensus       383 ~~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~  450 (638)
                      ++|++||++++...                      .++........+++||+.||++|+|+.....+
T Consensus        83 ~AN~iyeanw~~~~----------------------~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~d  128 (648)
T PLN03119         83 RAREIYLKNWDHQR----------------------QRLPENSNAERVREFIKNVYVQKKYAGANDAD  128 (648)
T ss_pred             HHHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhccCcCCCC
Confidence            99999999997621                      22333344667789999999999999876543

>PLN03131 hypothetical protein; Provisional

Probab=99.95  E-value=4.4e-29  Score=263.19  Aligned_cols=119  Identities=22%  Similarity=0.475  Sum_probs=105.0

Q ss_pred             CCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHH
Q 006616          304 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF  383 (638)
Q Consensus       304 ~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~  383 (638)
                      +++++++.|++.|+|+.|+||++++|+|||+|||||||++||||||+||   +|||||+||  .|++++|+.|+.+||.+
T Consensus         9 rnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg---hRVKSVTLD--~WtdeEV~~Mk~gGN~~   83 (705)
T PLN03131          9 RNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT---HRVKSVSMS--KFTSQDVEALQNGGNQR   83 (705)
T ss_pred             HHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC---cccccccCC--CCCHHHHHHHHHhccHH
Confidence            4678899999999999999999999999999999999999999999997   499999999  79999999999999999


Q ss_pred             HHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCC
Q 006616          384 ANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKD  449 (638)
Q Consensus       384 ~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~  449 (638)
                      +|+|||++++...                      .++..++....++.||+.||++|+|+.....
T Consensus        84 AN~iyeanwd~~r----------------------~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~  127 (705)
T PLN03131         84 AREIYLKDWDQQR----------------------QRLPDNSKVDKIREFIKDIYVDKKYAGGKTH  127 (705)
T ss_pred             HHHHHHhhccccc----------------------CCCCCCccHHHHHHHHHHHHhhhhhhcCCCC
Confidence            9999999987621                      1222344556788999999999999987643

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=99.93  E-value=6.4e-26  Score=226.15  Aligned_cols=119  Identities=33%  Similarity=0.508  Sum_probs=97.2

Q ss_pred             hHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHH
Q 006616          307 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS  386 (638)
Q Consensus       307 ~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~  386 (638)
                      .+++.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+|||++||  .|++++|++|+..||.++|.
T Consensus        11 ~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD--~Ws~eqL~~Mk~GGN~rA~~   88 (395)
T PLN03114         11 SVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD--SWSSEQLKMMIYGGNNRAQV   88 (395)
T ss_pred             HHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCC--CCCHHHHHHHHHhcCHHHHH
Confidence            5688899999999999999999999999999999999999999999999999999999  79999999999999999999


Q ss_pred             HHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCC
Q 006616          387 VWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP  447 (638)
Q Consensus       387 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~  447 (638)
                      +|+..--...      .              ..+-.-.+....+-+.+.++++.+.+....
T Consensus        89 fF~qhG~~~~------~--------------~~~~KY~S~aA~~Yre~L~keVa~~~a~~~  129 (395)
T PLN03114         89 FFKQYGWSDG------G--------------KTEAKYTSRAADLYKQILAKEVAKSKAEEE  129 (395)
T ss_pred             HHHHcCCCCC------C--------------CcccccCCHHHHHHHHHHHHHHHHhhhccc
Confidence            9985321100      0              011122233455556688888888887444

>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.92  E-value=6.7e-26  Score=224.21  Aligned_cols=82  Identities=39%  Similarity=0.799  Sum_probs=76.0

Q ss_pred             hHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHH
Q 006616          307 KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS  386 (638)
Q Consensus       307 ~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~  386 (638)
                      ..|..++...+|+.|+||++++|+|||++||||||.+|||+||+||||||+|||||||  .|.+.+|+.|.+.||.+++.
T Consensus         8 r~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD--~wkeiel~kMeaGGN~~~~e   85 (386)
T KOG0704|consen    8 RVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMD--KWKEIELKKMEAGGNERFRE   85 (386)
T ss_pred             HHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecc--cccHHHHHHHHhccchhHHH
Confidence            4455555556999999999999999999999999999999999999999999999999  79999999999999999999


Q ss_pred             HHHh
Q 006616          387 VWEE  390 (638)
Q Consensus       387 i~e~  390 (638)
                      +++.
T Consensus        86 FL~s   89 (386)
T KOG0704|consen   86 FLSS   89 (386)
T ss_pred             HHhh
Confidence            9874

>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.92  E-value=1.1e-25  Score=230.42  Aligned_cols=84  Identities=45%  Similarity=0.790  Sum_probs=80.4

Q ss_pred             chHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHH
Q 006616          306 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN  385 (638)
Q Consensus       306 ~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n  385 (638)
                      ..+++.|+..+.|+.|+|||+++|+|+|+.|||||||+||++||+||||||+|||..||  .|+.++|+.|+..||..|+
T Consensus        11 ~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLD--sWs~~qLR~M~~GGN~nA~   88 (454)
T KOG0706|consen   11 QTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLD--SWSWEQLRRMQVGGNANAR   88 (454)
T ss_pred             HHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccc--cCCHHHHhHhhhcCchhHH
Confidence            46788999999999999999999999999999999999999999999999999999999  6999999999999999999


Q ss_pred             HHHHhh
Q 006616          386 SVWEEL  391 (638)
Q Consensus       386 ~i~e~~  391 (638)
                      .+++..
T Consensus        89 ~FFkqh   94 (454)
T KOG0706|consen   89 VFFKQH   94 (454)
T ss_pred             HHHHHc
Confidence            998753

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.8e-23  Score=189.99  Aligned_cols=157  Identities=22%  Similarity=0.260  Sum_probs=134.4

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCC-
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT-  535 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~-  535 (638)
                      ...|++|+..|..+.|.-||...++.||-+|..|                       .++|+.+...+...++..|+.. 
T Consensus        39 Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaG-----------------------WtPlhia~s~g~~evVk~Ll~r~   95 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAG-----------------------WTPLHIAASNGNDEVVKELLNRS   95 (226)
T ss_pred             CceeeeeeecCchhHHHHHHhcCCCCCCCccccC-----------------------CchhhhhhhcCcHHHHHHHhcCC
Confidence            3578999988888877666657788888887666                       3334444444455555555555 


Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCH
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS  615 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~Tp  615 (638)
                      |+++|.....|.|+||||+..|..+++.+|+++|+.++.+|..|.||||.|+.-|..+++++|+..|+.+|..|..|+||
T Consensus        96 ~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~Tp  175 (226)
T KOG4412|consen   96 GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTP  175 (226)
T ss_pred             CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHhhCCC
Q 006616          616 LELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||.|...|+  .++..+|+++||
T Consensus       176 L~~al~e~~--~d~a~lLV~~gA  196 (226)
T KOG4412|consen  176 LHHALAEGH--PDVAVLLVRAGA  196 (226)
T ss_pred             HHHHHhccC--chHHHHHHHhcc
Confidence            999988888  678889999886

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.7e-21  Score=177.14  Aligned_cols=124  Identities=27%  Similarity=0.297  Sum_probs=110.2

Q ss_pred             CCcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHhC
Q 006616          512 RSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRG  590 (638)
Q Consensus       512 ~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g  590 (638)
                      +++++++|....... +..+|...+..+|.+|+.||||||+||..|+.++|+-|+.+ |+|+|+.+..|.|+||||+..|
T Consensus        39 Rt~LHwa~S~g~~ei-v~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~  117 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEI-VYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKG  117 (226)
T ss_pred             CceeeeeeecCchhH-HHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCC
Confidence            455555555444333 33344488999999999999999999999999999999999 9999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          591 KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       591 ~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +.+|+.+|+++|+.++++|..|.||||-|+..|.  .+++++|+..||
T Consensus       118 r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGk--lkvie~Li~~~a  163 (226)
T KOG4412|consen  118 RLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGK--LKVIEYLISQGA  163 (226)
T ss_pred             hhhHHHHHHhcCCCCcccccccCchhHHHHhccc--hhhHHHHHhcCC
Confidence            9999999999999999999999999999999998  999999998875

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=99.84  E-value=6.9e-21  Score=199.04  Aligned_cols=161  Identities=24%  Similarity=0.424  Sum_probs=125.8

Q ss_pred             ChhhhhHHHhHHHHHhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCccccccc
Q 006616            1 MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRS   80 (638)
Q Consensus         1 ~~a~~~ff~~G~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (638)
                      +|++++|||.|++|.++|.||.++|+..||++|+.++.++.+++++|.++++...+..+                     
T Consensus       203 l~slf~f~h~g~el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeLkKkmke~p~e~k~---------------------  261 (812)
T KOG1451|consen  203 LYSLFSFFHVGSELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEELKKKMKESPTEDKR---------------------  261 (812)
T ss_pred             HHHHHHHhhhhHHHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCcccccC---------------------
Confidence            48899999999999999999999999999999999999999999988888764432211                     


Q ss_pred             hhHHHHHHHhhhcCCCcceeEEEEEEeecCC-CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCc
Q 006616           81 SHKMIEAVMQSAAKGKVQTIRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL  159 (638)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~k~GyL~Kr~~~-~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~  159 (638)
                                     ...++|+||||.+.+. +.+.|.|.||++..+...+-.-....+                  .| 
T Consensus       262 ---------------p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk------------------~g-  307 (812)
T KOG1451|consen  262 ---------------PTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQK------------------TG-  307 (812)
T ss_pred             ---------------CCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccC------------------CC-
Confidence                           1223589999988654 557899999999876544322222211                  11 


Q ss_pred             cccccccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCCe--eEEEEeCCHHHHHHHHHHHHHH
Q 006616          160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~r--t~~lqA~se~e~~~Wi~ai~~~  232 (638)
                                     .+....+++.|..|+.+. .+.+|+||||+|.+.+|  +.++||-||+|+..||+|+.++
T Consensus       308 ---------------~k~g~~~~~~lKsC~RRk-tdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~  366 (812)
T KOG1451|consen  308 ---------------TKMGQTATFKLKSCSRRK-TDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGA  366 (812)
T ss_pred             ---------------CcCCCcceEEehhhccCc-ccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence                           112233457888998885 68899999999999876  8999999999999999999765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.83  E-value=9.4e-21  Score=202.70  Aligned_cols=156  Identities=27%  Similarity=0.316  Sum_probs=131.3

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|++|+-+|.++ |.++|+++|+|||...+..                      ..++++.|..++...++.+|+++||
T Consensus        80 tlLHWAAiNNrl~-v~r~li~~gadvn~~gG~l----------------------~stPLHWAar~G~~~vv~lLlqhGA  136 (600)
T KOG0509|consen   80 TLLHWAAINNRLD-VARYLISHGADVNAIGGVL----------------------GSTPLHWAARNGHISVVDLLLQHGA  136 (600)
T ss_pred             cceeHHHHcCcHH-HHHHHHHcCCCccccCCCC----------------------CCCcchHHHHcCcHHHHHHHHHcCC
Confidence            4555555554443 5566667777777766533                      4667777788888888999999999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc-CCCCCHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSL  616 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d-~~g~TpL  616 (638)
                      +++..|.+|.||||+||..|+..+|-+||.+|+|+|.+|.+|+||||+|+..|+...+..||+.|+.++..| .+|.|||
T Consensus       137 dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpL  216 (600)
T KOG0509|consen  137 DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPL  216 (600)
T ss_pred             CCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchH
Confidence            999999999999999999999999999999999999999999999999999999888999999999999988 8999999


Q ss_pred             HHHHHcCCCcHHHHHHHhhCCC
Q 006616          617 ELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |+|+..|+  ..++.+|++.|+
T Consensus       217 Hwa~~~gN--~~~v~Ll~~g~~  236 (600)
T KOG0509|consen  217 HWAVVGGN--LTAVKLLLEGGA  236 (600)
T ss_pred             HHHHhcCC--cceEehhhhcCC
Confidence            99999998  778886666653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.83  E-value=6.6e-21  Score=203.85  Aligned_cols=160  Identities=24%  Similarity=0.262  Sum_probs=144.0

Q ss_pred             cccccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCccccccccc
Q 006616          454 HSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLA  533 (638)
Q Consensus       454 ~~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~  533 (638)
                      +.....++.|+..|+.+.|..++...|.++|..|.++                       ...++.++.++...+..+|+
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g-----------------------~tlLHWAAiNNrl~v~r~li   98 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESEGESVNNPDREG-----------------------VTLLHWAAINNRLDVARYLI   98 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCC-----------------------ccceeHHHHcCcHHHHHHHH
Confidence            3445678899999999999888755599999988866                       55677888899999999999


Q ss_pred             CCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCC
Q 006616          534 GTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREG  612 (638)
Q Consensus       534 ~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g  612 (638)
                      ..|+++|..+ .-+.||||+||++|++.+|.+|+++|||++.+|..|.||||+|++.|+..+|.+||.+|+|++.+|.+|
T Consensus        99 ~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~g  178 (600)
T KOG0509|consen   99 SHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNG  178 (600)
T ss_pred             HcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCC
Confidence            9999999988 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          613 KTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       613 ~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|||++|+.+|+.  ..+.+||.-||
T Consensus       179 rTpLmwAaykg~~--~~v~~LL~f~a  202 (600)
T KOG0509|consen  179 RTPLMWAAYKGFA--LFVRRLLKFGA  202 (600)
T ss_pred             CCHHHHHHHhccc--HHHHHHHHhcc
Confidence            9999999999983  33888887664

>PHA02791 ankyrin-like protein; Provisional

Probab=99.82  E-value=6.9e-20  Score=187.85  Aligned_cols=177  Identities=14%  Similarity=0.108  Sum_probs=137.1

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccch-----hccchhhHHHHHhhhhccc---cCCCcccccccccCCcccc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-----SCISSLTLAKAMLLNEQTS---LERSSSSLTGNSSDRSSSG  528 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~-----~~~~~~~l~~~ll~~~~~~---~~~~~~~l~~~~~~~~~~~  528 (638)
                      ...|+.|+..++.+ ++++|++.|+++|..++..     ....+..+++.|+..+...   .....++++.+...+...+
T Consensus        31 ~TpLh~Aa~~g~~e-iv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~ei  109 (284)
T PHA02791         31 HSALYYAIADNNVR-LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQT  109 (284)
T ss_pred             CcHHHHHHHcCCHH-HHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            35688888877655 5566778999998876432     1223345666666543221   1122344555555666778


Q ss_pred             cccccCCCCCCCcCCCCCC-cHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          529 SLNLAGTSEGQTMDDLEGC-TLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       529 ~~lL~~~~~~~~~~d~~G~-TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      +.+|+..|++++..+..|+ ||||+|+..|+.++|++|+.+|.+.  .| ..|.||||+|+..|+.+++++||++||+++
T Consensus       110 vk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n  187 (284)
T PHA02791        110 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN  187 (284)
T ss_pred             HHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            8888999999999988885 8999999999999999999987654  23 258999999999999999999999999999


Q ss_pred             CccCCCCCH-HHHHHHcCCCcHHHHHHHhhCCC
Q 006616          607 AVNREGKTS-LELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       607 ~~d~~g~Tp-L~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+|..|.|| ||+|+..|+  .++|++|+++||
T Consensus       188 ~~d~~g~t~~L~~Aa~~~~--~e~v~lLl~~Ga  218 (284)
T PHA02791        188 TNNSLLFIPDIKLAIDNKD--LEMLQALFKYDI  218 (284)
T ss_pred             cccCCCCChHHHHHHHcCC--HHHHHHHHHCCC
Confidence            999999987 999999998  999999999986

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.82  E-value=6.3e-20  Score=200.14  Aligned_cols=179  Identities=18%  Similarity=0.223  Sum_probs=140.3

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc----CCCcccccccccCCc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL----ERSSSSLTGNSSDRS  525 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~----~~~~~~l~~~~~~~~  525 (638)
                      ...|+.|+..++.+ ++++|++.|+++|..+..+..+       ++..+++.++..+....    ....++++.+...+.
T Consensus        36 ~tpL~~A~~~~~~~-~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~  114 (413)
T PHA02875         36 ISPIKLAMKFRDSE-AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKK  114 (413)
T ss_pred             CCHHHHHHHcCCHH-HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCC
Confidence            35677777776665 5577778899888775544222       33455555554432211    122344555555666


Q ss_pred             ccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q 006616          526 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP  605 (638)
Q Consensus       526 ~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~  605 (638)
                      ..++.+|+..|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus       115 ~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        115 LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            77888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCC-CHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          606 RAVNREGK-TSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       606 ~~~d~~g~-TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +..+..|. ||+|+|+..|+  .+++++|+++||
T Consensus       195 n~~~~~~~~t~l~~A~~~~~--~~iv~~Ll~~ga  226 (413)
T PHA02875        195 DYFGKNGCVAALCYAIENNK--IDIVRLFIKRGA  226 (413)
T ss_pred             CcCCCCCCchHHHHHHHcCC--HHHHHHHHHCCc
Confidence            99888875 78888999987  889999999986

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.80  E-value=3.1e-19  Score=154.32  Aligned_cols=94  Identities=27%  Similarity=0.480  Sum_probs=74.2

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      ++|+|||.|+++. .++|+||||+|+ ++.|+||++...                                       ..
T Consensus         2 v~k~G~L~Kkg~~-~k~WkkRwfvL~-~~~L~yyk~~~~---------------------------------------~~   40 (100)
T cd01233           2 VSKKGYLNFPEET-NSGWTRRFVVVR-RPYLHIYRSDKD---------------------------------------PV   40 (100)
T ss_pred             cceeEEEEeeCCC-CCCcEEEEEEEE-CCEEEEEccCCC---------------------------------------cc
Confidence            4699999999664 589999999999 577777777532                                       12


Q ss_pred             ccceeecccceeecCCCC---CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQ---SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~---~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +.+.|+|..+.|...++.   ..+++||.|++++|+|+|+|+|++|+++||++|+.++
T Consensus        41 ~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          41 ERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             EeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence            334577777777654332   1357999999999999999999999999999998765

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.80  E-value=3.3e-19  Score=194.48  Aligned_cols=178  Identities=17%  Similarity=0.173  Sum_probs=146.7

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc---CCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..|+.+.+ ++|++.|+|+|..+..+..+       .+..++++|+..+....   .....+++.+...+...
T Consensus         4 ~~L~~A~~~g~~~iv-~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875          4 VALCDAILFGELDIA-RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             hHHHHHHHhCCHHHH-HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence            478899999987655 56669999999987666433       34466777776544321   22334555555666666


Q ss_pred             ccccccCCCCCCC-cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          528 GSLNLAGTSEGQT-MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       528 ~~~lL~~~~~~~~-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      .+..|+..|+.++ ..+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus        83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~  162 (413)
T PHA02875         83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD  162 (413)
T ss_pred             HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            7777888877654 456789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          607 AVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       607 ~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+|..|.||||+|+..|+  .+++++|+++||
T Consensus       163 ~~d~~g~TpL~~A~~~g~--~eiv~~Ll~~ga  192 (413)
T PHA02875        163 IEDCCGCTPLIIAMAKGD--IAICKMLLDSGA  192 (413)
T ss_pred             CCCCCCCCHHHHHHHcCC--HHHHHHHHhCCC
Confidence            999999999999999998  899999999986

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.79  E-value=3.4e-19  Score=198.76  Aligned_cols=178  Identities=17%  Similarity=0.170  Sum_probs=135.7

Q ss_pred             cceeccccccc-----chhhhhhhcccccCccccccchhccc----------hhhHHHHHhhhhccc------cCCCccc
Q 006616          458 HQIWEGVRTND-----KKAVYRHIVNFEVDVNAVYEQVSCIS----------SLTLAKAMLLNEQTS------LERSSSS  516 (638)
Q Consensus       458 ~~L~~Av~~~d-----~~~v~~lLl~~gaDvN~~~~~~~~~~----------~~~l~~~ll~~~~~~------~~~~~~~  516 (638)
                      ..|+.|+..+.     ..+++++|++.|||+|..+..+..+.          +.+++++|+..+.+.      .+.++++
T Consensus        71 tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh  150 (494)
T PHA02989         71 TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLH  150 (494)
T ss_pred             CcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHH
Confidence            44555554432     34677888888999888877664432          245666666654332      2345555


Q ss_pred             ccccccCCcccccccccCCCCCCCc-CCCCCCcHHHHHHHhC----CHHHHHHHHHcCCCCcc-----------------
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTM-DDLEGCTLLHLACDSA----DIGMLELLLQYGANINA-----------------  574 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~-~d~~G~TpLh~Aa~~g----~~~~v~~Ll~~gadvn~-----------------  574 (638)
                      +++........++.+|+..|++++. .+..|.||||+|+..+    +.+++++|+++|+++|.                 
T Consensus       151 ~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~  230 (494)
T PHA02989        151 MYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK  230 (494)
T ss_pred             HHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch
Confidence            5555555566777888888888887 5778888888887654    78888888888877654                 


Q ss_pred             ---------------------cCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616          575 ---------------------TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL  633 (638)
Q Consensus       575 ---------------------~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lL  633 (638)
                                           +|..|+||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..|+  .++|++|
T Consensus       231 ~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~--~~iv~~L  308 (494)
T PHA02989        231 ILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN--IDMLNRI  308 (494)
T ss_pred             hhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC--HHHHHHH
Confidence                                 45569999999999999999999999999999999999999999999998  8999999


Q ss_pred             hhCC
Q 006616          634 SDSH  637 (638)
Q Consensus       634 le~g  637 (638)
                      ++.+
T Consensus       309 L~~~  312 (494)
T PHA02989        309 LQLK  312 (494)
T ss_pred             HhcC
Confidence            9865

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.79  E-value=3.2e-19  Score=198.22  Aligned_cols=179  Identities=23%  Similarity=0.270  Sum_probs=132.8

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhh-------HHHHHhhhhcc-ccCCCcccccccc--------
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLT-------LAKAMLLNEQT-SLERSSSSLTGNS--------  521 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~-------l~~~ll~~~~~-~~~~~~~~l~~~~--------  521 (638)
                      ..|+.|+..|+.+.| ++|++.|+|+|..+..+..+.++.       .++.++..... ........+..+.        
T Consensus        39 tPLh~A~~~g~~e~v-k~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~  117 (477)
T PHA02878         39 IPLHQAVEARNLDVV-KSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIF  117 (477)
T ss_pred             chHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHH
Confidence            458888888877655 566688999999888775554432       22223221110 0000000000000        


Q ss_pred             -------------------------cCCcccccccccCCCCCCCcCCCC-CCcHHHHHHHhCCHHHHHHHHHcCCCCccc
Q 006616          522 -------------------------SDRSSSGSLNLAGTSEGQTMDDLE-GCTLLHLACDSADIGMLELLLQYGANINAT  575 (638)
Q Consensus       522 -------------------------~~~~~~~~~lL~~~~~~~~~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~  575 (638)
                                               ......++.+|+..|++++..|.. |.||||+|+..|+.+++++|+++|+++|.+
T Consensus       118 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~  197 (477)
T PHA02878        118 KIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP  197 (477)
T ss_pred             HHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc
Confidence                                     001123667788899999999988 999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          576 DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       576 d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+. +.+++++|+++|+
T Consensus       198 d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~-~~~iv~~Ll~~ga  259 (477)
T PHA02878        198 DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK-DYDILKLLLEHGV  259 (477)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcC-CHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999997631 3889999999885

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.3e-19  Score=176.91  Aligned_cols=154  Identities=16%  Similarity=0.143  Sum_probs=93.1

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..++...|..++ +.   +|..+..+                     .+++++++........++.+|++.|+
T Consensus        23 ~pL~~A~~~~~~~~vk~Li-~~---~n~~~~~g---------------------~TpLh~a~~~~~~~~eiv~~Ll~~ga   77 (209)
T PHA02859         23 NPLFYYVEKDDIEGVKKWI-KF---VNDCNDLY---------------------ETPIFSCLEKDKVNVEILKFLIENGA   77 (209)
T ss_pred             cHHHHHHHhCcHHHHHHHH-Hh---hhccCccC---------------------CCHHHHHHHcCCCCHHHHHHHHHCCC
Confidence            4577777777777665554 32   33333333                     23333333222334555666666777


Q ss_pred             CCCcCC-CCCCcHHHHHHHh---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH--hCCHHHHHHHHhCCCCCCCccCC
Q 006616          538 GQTMDD-LEGCTLLHLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCIL--RGKAMFAKLLLTRGADPRAVNRE  611 (638)
Q Consensus       538 ~~~~~d-~~G~TpLh~Aa~~---g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~--~g~~~~v~lLl~~gad~~~~d~~  611 (638)
                      +++..+ ..|.||||+|+..   ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|++++.+|.+
T Consensus        78 dvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~  157 (209)
T PHA02859         78 DVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFD  157 (209)
T ss_pred             CCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCC
Confidence            777665 3567777766543   35677777777777777777777777776654  34667777777777777777777


Q ss_pred             CCCHHHHH-HHcCCCcHHHHHHHhhCCC
Q 006616          612 GKTSLELA-VESNFADSEVLAILSDSHG  638 (638)
Q Consensus       612 g~TpL~~A-~~~g~~d~eiv~lLle~ga  638 (638)
                      |.||||.+ +..++  .+++++|+++|+
T Consensus       158 g~t~Lh~~a~~~~~--~~iv~~Ll~~Ga  183 (209)
T PHA02859        158 NNNILYSYILFHSD--KKIFDFLTSLGI  183 (209)
T ss_pred             CCcHHHHHHHhcCC--HHHHHHHHHcCC
Confidence            77777743 33443  667777776664

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.79  E-value=5.5e-19  Score=153.37  Aligned_cols=93  Identities=20%  Similarity=0.527  Sum_probs=68.1

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCC-CCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      |+|||.|+++...++|+||||||+ ++.|+||+++. ..+.|                                      
T Consensus         1 KeG~L~K~g~~~~k~wkkRwFvL~-~~~L~Yyk~~~d~~~~G--------------------------------------   41 (103)
T cd01251           1 KEGFMEKTGPKHTEGFKKRWFTLD-DRRLMYFKDPLDAFAKG--------------------------------------   41 (103)
T ss_pred             CceeEEecCCCCCCCceeEEEEEe-CCEEEEECCCCCcCcCc--------------------------------------
Confidence            589999997655689999999998 67777887653 23333                                      


Q ss_pred             cceeecccc----eeec--CCC-CCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTS----TIKV--DAD-QSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       180 ~~~i~l~~~----~v~~--~~~-~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                        .|+|..+    +|..  .+. ..+..+||+|++|+|+|+|+|+|++|+++||+||+.++.
T Consensus        42 --~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          42 --EVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             --EEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence              2444321    2221  011 223346999999999999999999999999999999874

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>PHA03095 ankyrin-like protein; Provisional

Probab=99.79  E-value=5.4e-19  Score=196.10  Aligned_cols=179  Identities=22%  Similarity=0.172  Sum_probs=147.5

Q ss_pred             cceecccccc-cchhhhhhhcccccCccccccchhccch---------hhHHHHHhhhhc-----cccCCCccccccccc
Q 006616          458 HQIWEGVRTN-DKKAVYRHIVNFEVDVNAVYEQVSCISS---------LTLAKAMLLNEQ-----TSLERSSSSLTGNSS  522 (638)
Q Consensus       458 ~~L~~Av~~~-d~~~v~~lLl~~gaDvN~~~~~~~~~~~---------~~l~~~ll~~~~-----~~~~~~~~~l~~~~~  522 (638)
                      ..|+.|+... ....++++|++.|+|+|..+..+..+.+         ..+++.++..+.     +..+.++++.++...
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF  198 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHC
Confidence            5677777433 3456788899999999998887754443         344555554322     233455666666555


Q ss_pred             CCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCH--HHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616          523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADI--GMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT  600 (638)
Q Consensus       523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~--~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~  600 (638)
                      ......+..|+..|++++..|..|.||||+|+..|+.  .+++.|+..|+++|.+|..|+||||+|+..|+.+++++||+
T Consensus       199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~  278 (471)
T PHA03095        199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA  278 (471)
T ss_pred             CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            6667778889999999999999999999999999975  68899999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       601 ~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +||+++.+|.+|.|||++|+..|+  .+++++|+++++
T Consensus       279 ~gad~n~~~~~g~tpl~~A~~~~~--~~~v~~LL~~~~  314 (471)
T PHA03095        279 LGADINAVSSDGNTPLSLMVRNNN--GRAVRAALAKNP  314 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHHHhCC--HHHHHHHHHhCC
Confidence            999999999999999999999998  889999998764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=1.1e-19  Score=186.65  Aligned_cols=151  Identities=24%  Similarity=0.359  Sum_probs=131.6

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..||.|+.+|.+ +|+++|+..||+||......                       .+++.+++..+...++..|++.|+
T Consensus        86 ppLWaAsaAGHl-~vVk~L~~~ga~VN~tT~TN-----------------------StPLraACfDG~leivKyLvE~ga  141 (615)
T KOG0508|consen   86 PPLWAASAAGHL-EVVKLLLRRGASVNDTTRTN-----------------------STPLRAACFDGHLEIVKYLVEHGA  141 (615)
T ss_pred             chhhHHhccCcH-HHHHHHHHhcCccccccccC-----------------------CccHHHHHhcchhHHHHHHHHcCC
Confidence            347766666655 56678889999999754322                       345666777777888888899999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      |+++.|..|.|.||+||..|+.+++++|++.|||+|.++..|+|+||.|+..|+.+++++|+++|+.++. |..|.|||.
T Consensus       142 d~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~  220 (615)
T KOG0508|consen  142 DPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLL  220 (615)
T ss_pred             CCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864 667999999


Q ss_pred             HHHHcCCCcHHHHHHHhh
Q 006616          618 LAVESNFADSEVLAILSD  635 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle  635 (638)
                      .|+..|+  .++|+.|++
T Consensus       221 ~Aa~tG~--~~iVe~L~~  236 (615)
T KOG0508|consen  221 LAAVTGH--TDIVERLLQ  236 (615)
T ss_pred             HHhhhcc--hHHHHHHhc
Confidence            9999999  779999984

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=1.8e-19  Score=185.09  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=138.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|..|+++|....|..+|..-++++.....-..               ....-...+++.+++.-+...++.+|+..|+
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~F---------------Dge~IegappLWaAsaAGHl~vVk~L~~~ga  108 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRF---------------DGETIEGAPPLWAASAAGHLEVVKLLLRRGA  108 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEe---------------CCcccCCCchhhHHhccCcHHHHHHHHHhcC
Confidence            4577788888777665555447888865322110               0011234555777777778888999999999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      +||....-..|||-.||..|++++|++|+++|+|++..|..|.|.||+||..||.+|+++|++.|||+|.++..|.|+||
T Consensus       109 ~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH  188 (615)
T KOG0508|consen  109 SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALH  188 (615)
T ss_pred             ccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHH
Confidence            99999888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHhhCCC
Q 006616          618 LAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+++.|+  .+|+++|+.+||
T Consensus       189 ~caEsG~--vdivq~Ll~~ga  207 (615)
T KOG0508|consen  189 DCAESGS--VDIVQLLLKHGA  207 (615)
T ss_pred             hhhhccc--HHHHHHHHhCCc
Confidence            9999999  999999999885

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.78  E-value=9.3e-19  Score=149.01  Aligned_cols=92  Identities=20%  Similarity=0.450  Sum_probs=68.6

Q ss_pred             EEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616          101 RQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus       101 k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .+|||-|+++.  ..|+|+||||+|+ ++.|+||+.....                                      ..
T Consensus         2 ~~G~l~k~~g~~r~~K~WkrRwF~L~-~~~L~y~K~~~~~--------------------------------------~~   42 (101)
T cd01264           2 IEGQLKEKKGRWRFIKRWKTRYFTLS-GAQLLFQKGKSKD--------------------------------------DP   42 (101)
T ss_pred             cceEEeecCccceeeecceeEEEEEe-CCEEEEEeccCcc--------------------------------------CC
Confidence            48999999764  6789999999999 5667777665321                                      01


Q ss_pred             ccceeecccce-eecCCCCC----CCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTST-IKVDADQS----DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       179 ~~~~i~l~~~~-v~~~~~~~----~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      ..+.|+|..|. |+. .++.    .++|||+|++|+|+|+|+|+|++|+++||++|+.|
T Consensus        43 ~~g~IdL~~~~sVk~-~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          43 DDCSIDLSKIRSVKA-VAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             CCceEEcccceEEee-ccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence            12346665544 443 2221    33699999999999999999999999999999876

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PHA02795 ankyrin-like protein; Provisional

Probab=99.78  E-value=4.8e-19  Score=188.60  Aligned_cols=158  Identities=20%  Similarity=0.182  Sum_probs=128.2

Q ss_pred             cccceeccccc-ccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616          456 VAHQIWEGVRT-NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG  534 (638)
Q Consensus       456 ~~~~L~~Av~~-~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~  534 (638)
                      ....|+.++.. ++..+++++|+++|||+|..+..                         .+++.+...+...++.+|+.
T Consensus       116 ~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~-------------------------t~lh~A~~~~~~eIVk~Lls  170 (437)
T PHA02795        116 VQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECL-------------------------NAYFRGICKKESSVVEFILN  170 (437)
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCC-------------------------CHHHHHHHcCcHHHHHHHHh
Confidence            34567777762 35566778888999999875432                         23444555556667777777


Q ss_pred             CCCCCCcC------CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc
Q 006616          535 TSEGQTMD------DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV  608 (638)
Q Consensus       535 ~~~~~~~~------d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~  608 (638)
                      .|++....      +..+.|++|.|+..++.+++++|+.+||++|.+|..|.||||+|+..|+.+++++|+++||+++.+
T Consensus       171 ~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~  250 (437)
T PHA02795        171 CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAV  250 (437)
T ss_pred             cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            78643222      134789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHcCC------CcHHHHHHHhhCCC
Q 006616          609 NREGKTSLELAVESNF------ADSEVLAILSDSHG  638 (638)
Q Consensus       609 d~~g~TpL~~A~~~g~------~d~eiv~lLle~ga  638 (638)
                      |..|.||||+|+..|+      ...+++++|+++|+
T Consensus       251 d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        251 MSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             CCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            9999999999999984      13689999999885

>PHA02791 ankyrin-like protein; Provisional

Probab=99.78  E-value=1.9e-18  Score=177.16  Aligned_cols=165  Identities=12%  Similarity=0.101  Sum_probs=131.7

Q ss_pred             cchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhccc-cCCCcccccccccCCcccccccccCCCCCC
Q 006616          468 DKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTS-LERSSSSLTGNSSDRSSSGSLNLAGTSEGQ  539 (638)
Q Consensus       468 d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~-~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~  539 (638)
                      +..+++++|++.|++  ..+..+..+       .+..++..|+..+... .....++++.+...+...++.+|+..|+++
T Consensus        10 ~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadv   87 (284)
T PHA02791         10 KSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDD   87 (284)
T ss_pred             CHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            456778899888885  345545333       3445666666544321 112245555566667777888889999999


Q ss_pred             CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCC-cHHHHHHHhCCHHHHHHHHhCCCCCCCcc-CCCCCHHH
Q 006616          540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGL-TPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLE  617 (638)
Q Consensus       540 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~-TpLh~A~~~g~~~~v~lLl~~gad~~~~d-~~g~TpL~  617 (638)
                      +..|..|+||||+|+..|+.+++++|+.+|++++.++..|+ ||||+|+..|+.++|++|++++++.  .| ..|.||||
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh  165 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIH  165 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHH
Confidence            99999999999999999999999999999999999999885 8999999999999999999987653  23 35899999


Q ss_pred             HHHHcCCCcHHHHHHHhhCCC
Q 006616          618 LAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|+..|+  .+++++|+++||
T Consensus       166 ~Aa~~g~--~eiv~lLL~~gA  184 (284)
T PHA02791        166 ITIKNGH--VDMMILLLDYMT  184 (284)
T ss_pred             HHHHcCC--HHHHHHHHHCCC
Confidence            9999998  899999999986

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.5e-18  Score=190.58  Aligned_cols=174  Identities=22%  Similarity=0.314  Sum_probs=133.5

Q ss_pred             ccccceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhccccCCCcccccccccCCccc
Q 006616          455 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       455 ~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~  527 (638)
                      .....|+.|+..|+.+.| ++|++.|+|+|..+..+..+       .+..++++|+..+...     ..+...  .....
T Consensus        34 ~~~tpL~~A~~~g~~~iv-~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~-----~~~~~~--~~~~~  105 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIV-ELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDT-----SILPIP--CIEKD  105 (434)
T ss_pred             CCCCHHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----Ccchhc--cCCHH
Confidence            334678888888887655 66779999999877665332       3345666666543221     111111  12234


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      .+..|+..|++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~  185 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV  185 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC
Confidence            55667788888888888899999999999999999999999999998888899999999999999999999999999888


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .|..|.||||+|+..|+  .+++++|++.|+
T Consensus       186 ~~~~g~tpL~~A~~~g~--~~iv~~Ll~~g~  214 (434)
T PHA02874        186 KDNNGESPLHNAAEYGD--YACIKLLIDHGN  214 (434)
T ss_pred             CCCCCCCHHHHHHHcCC--HHHHHHHHhCCC
Confidence            88889999999999887  889999988874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.4e-18  Score=193.16  Aligned_cols=155  Identities=25%  Similarity=0.283  Sum_probs=135.6

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccc-----cccCCcccccccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTG-----NSSDRSSSGSLNL  532 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~-----~~~~~~~~~~~lL  532 (638)
                      ..|+.|+..++.+. +++|++.|+|+|..+..+.                       .+++.     +...+....+.+|
T Consensus        37 t~L~~A~~~~~~~i-vk~Ll~~g~~~~~~~~~~~-----------------------t~L~~~~~~~a~~~~~~~iv~~L   92 (480)
T PHA03100         37 LPLYLAKEARNIDV-VKILLDNGADINSSTKNNS-----------------------TPLHYLSNIKYNLTDVKEIVKLL   92 (480)
T ss_pred             hhhhhhhccCCHHH-HHHHHHcCCCCCCccccCc-----------------------CHHHHHHHHHHHhhchHHHHHHH
Confidence            57888888877665 5666799999998765541                       22233     4455566778889


Q ss_pred             cCCCCCCCcCCCCCCcHHHHHH--HhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhC--CHHHHHHHHhCCCCCCCc
Q 006616          533 AGTSEGQTMDDLEGCTLLHLAC--DSADIGMLELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKLLLTRGADPRAV  608 (638)
Q Consensus       533 ~~~~~~~~~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g--~~~~v~lLl~~gad~~~~  608 (638)
                      +..|++++..|..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++.+
T Consensus        93 l~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~  172 (480)
T PHA03100         93 LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAK  172 (480)
T ss_pred             HHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccc
Confidence            9999999999999999999999  999999999999999999999999999999999999  999999999999999999


Q ss_pred             cCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          609 NREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       609 d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |..|.||||+|+..|+  .+++++|+++|+
T Consensus       173 d~~g~tpL~~A~~~~~--~~iv~~Ll~~ga  200 (480)
T PHA03100        173 NRYGYTPLHIAVEKGN--IDVIKFLLDNGA  200 (480)
T ss_pred             cCCCCCHHHHHHHhCC--HHHHHHHHHcCC
Confidence            9999999999999997  899999999986

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.77  E-value=8.3e-19  Score=198.77  Aligned_cols=151  Identities=11%  Similarity=0.109  Sum_probs=116.9

Q ss_pred             ccchhhhhhhcccc-cCcccc-ccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCC
Q 006616          467 NDKKAVYRHIVNFE-VDVNAV-YEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL  544 (638)
Q Consensus       467 ~d~~~v~~lLl~~g-aDvN~~-~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~  544 (638)
                      +...+++++|++.| +|+|.. +..+                     .++++.++........++.+|+..|++++..|.
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G---------------------~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~  210 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTG---------------------YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN  210 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCC---------------------CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC
Confidence            34445667888999 999987 5544                     233333222233345677788889999999999


Q ss_pred             CCCcHHHHHHHhCC--HHHHHHHHHcCCCCcccCCCCCcHHHHH------------------------------------
Q 006616          545 EGCTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRC------------------------------------  586 (638)
Q Consensus       545 ~G~TpLh~Aa~~g~--~~~v~~Ll~~gadvn~~d~~G~TpLh~A------------------------------------  586 (638)
                      .|.||||+|+..|+  .++|++||++||++|.+|..|+||||+|                                    
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~  290 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYIT  290 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHH
Confidence            99999999999885  4889999999999999999999999865                                    


Q ss_pred             -HHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          587 -ILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       587 -~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                       +..|+.+++++|+++|++++.+|..|+||||+|+..+....+++++|+++||
T Consensus       291 AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA  343 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN  343 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence             3447788899999999999999999999999887543333789999998886

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.9e-18  Score=192.23  Aligned_cols=179  Identities=23%  Similarity=0.323  Sum_probs=147.2

Q ss_pred             ccceeccc--ccccchhhhhhhcccccCccccccchhcc-------c--hhhHHHHHhhhhcccc---CCCccccccccc
Q 006616          457 AHQIWEGV--RTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------S--SLTLAKAMLLNEQTSL---ERSSSSLTGNSS  522 (638)
Q Consensus       457 ~~~L~~Av--~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~--~~~l~~~ll~~~~~~~---~~~~~~l~~~~~  522 (638)
                      ...|+.|+  ..++. .++++|++.|+|+|..+..+..+       .  ...+++.++..+.+..   ....++++.+..
T Consensus       107 ~tpL~~A~~~~~~~~-~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~  185 (480)
T PHA03100        107 ITPLLYAISKKSNSY-SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVE  185 (480)
T ss_pred             CchhhHHHhcccChH-HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence            35678888  55554 45677779999999887766332       2  4556666665443211   123345555555


Q ss_pred             CCcccccccccCCCCCCCcCCCCC------CcHHHHHHHhCC--HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHH
Q 006616          523 DRSSSGSLNLAGTSEGQTMDDLEG------CTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF  594 (638)
Q Consensus       523 ~~~~~~~~lL~~~~~~~~~~d~~G------~TpLh~Aa~~g~--~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~  594 (638)
                      .+....+.+|+..|++++..+..|      .||||+|+..|+  .+++++|+++|+++|.+|..|.||||+|+..|+.++
T Consensus       186 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~i  265 (480)
T PHA03100        186 KGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF  265 (480)
T ss_pred             hCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            667788889999999999999988      999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          595 AKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       595 v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +++|+++|++++.+|..|.|||++|+..++  .+++++|+++|+
T Consensus       266 v~~Ll~~gad~n~~d~~g~tpl~~A~~~~~--~~iv~~Ll~~g~  307 (480)
T PHA03100        266 VKYLLDLGANPNLVNKYGDTPLHIAILNNN--KEIFKLLLNNGP  307 (480)
T ss_pred             HHHHHHcCCCCCccCCCCCcHHHHHHHhCC--HHHHHHHHhcCC
Confidence            999999999999999999999999999987  899999999986

>PHA02917 ankyrin-like protein; Provisional

Probab=99.77  E-value=2.2e-18  Score=196.20  Aligned_cols=181  Identities=13%  Similarity=0.100  Sum_probs=138.8

Q ss_pred             ccceeccccc--ccchhhhhhhcccccCccccccchhccchhhH-----------HHHHhhhhc-cccCCCccccccccc
Q 006616          457 AHQIWEGVRT--NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTL-----------AKAMLLNEQ-TSLERSSSSLTGNSS  522 (638)
Q Consensus       457 ~~~L~~Av~~--~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l-----------~~~ll~~~~-~~~~~~~~~l~~~~~  522 (638)
                      ...|+.|+..  .+..+++++|++.|+|+|..+..+.++.+...           +..++.... .........+..++.
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~  112 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSK  112 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhh
Confidence            4678876544  23456667888999999998877755544322           233333222 122222233455666


Q ss_pred             CCcccccccccCCCCCCCcCCCCCCcHHHHHH--HhCCHHHHHHHHHcCCCCcccCC---CC-----------CcHHHHH
Q 006616          523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLAC--DSADIGMLELLLQYGANINATDS---RG-----------LTPLHRC  586 (638)
Q Consensus       523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~gadvn~~d~---~G-----------~TpLh~A  586 (638)
                      ++...++.+|+..|+++|..|..|+||||.|+  ..|+.+++++||++||++|..|.   .|           .||||+|
T Consensus       113 ~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a  192 (661)
T PHA02917        113 NVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLY  192 (661)
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHH
Confidence            77778889999999999999999999999654  57899999999999999987653   34           5999999


Q ss_pred             HH-----------hCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          587 IL-----------RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       587 ~~-----------~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +.           .++.++|++|+++|||++.+|.+|.||||+|+..|+.+.+||++|++ ||
T Consensus       193 ~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~  254 (661)
T PHA02917        193 IISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI  254 (661)
T ss_pred             HhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence            86           46899999999999999999999999999999999866799999986 53

>PHA03095 ankyrin-like protein; Provisional

Probab=99.77  E-value=1.8e-18  Score=191.83  Aligned_cols=179  Identities=20%  Similarity=0.117  Sum_probs=150.3

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchh---------hHHHHHhhhhcc-----ccCCCcccccccccC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL---------TLAKAMLLNEQT-----SLERSSSSLTGNSSD  523 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~---------~l~~~ll~~~~~-----~~~~~~~~l~~~~~~  523 (638)
                      ..|+.|+..++...++++|++.|+|+|..+..+..+.+.         .+++.|+..+.+     ..+.+++++++....
T Consensus        85 TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~  164 (471)
T PHA03095         85 TPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN  164 (471)
T ss_pred             CHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            578889998887888899999999999998877444433         445555554322     334556655555555


Q ss_pred             CcccccccccCCCCCCCcCCCCCCcHHHHHHHh--CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCH--HHHHHHH
Q 006616          524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDS--ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA--MFAKLLL  599 (638)
Q Consensus       524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~--g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~--~~v~lLl  599 (638)
                      .....+.+|+..|++++..|..|.||||+|+..  ++.+++++|+++|++++.+|..|+||||+|+..|+.  .++..|+
T Consensus       165 ~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll  244 (471)
T PHA03095        165 ANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL  244 (471)
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHH
Confidence            566778889999999999999999999999875  778999999999999999999999999999999875  6888999


Q ss_pred             hCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          600 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       600 ~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +.|++++.+|..|.||||+|+..|+  .+++++|+++||
T Consensus       245 ~~g~din~~d~~g~TpLh~A~~~~~--~~~v~~LL~~ga  281 (471)
T PHA03095        245 IAGISINARNRYGQTPLHYAAVFNN--PRACRRLIALGA  281 (471)
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            9999999999999999999999998  899999999986

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.76  E-value=1.4e-18  Score=197.07  Aligned_cols=160  Identities=19%  Similarity=0.153  Sum_probs=128.8

Q ss_pred             cceecccccc-cchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          458 HQIWEGVRTN-DKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       458 ~~L~~Av~~~-d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      ..|+.|+... ...+++++|++.|+|||..+..+                     .+++++++...+....++.+|+..|
T Consensus       179 TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G---------------------~TPLH~Aa~~g~~~~eIVklLLe~G  237 (764)
T PHA02716        179 GILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHL---------------------ITPLHTYLITGNVCASVIKKIIELG  237 (764)
T ss_pred             cHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCC---------------------CCHHHHHHHcCCCCHHHHHHHHHcC
Confidence            3455554332 23568889999999999988766                     3444544444433446788899999


Q ss_pred             CCCCcCCCCCCcHHHHH-------------------------------------HHhCCHHHHHHHHHcCCCCcccCCCC
Q 006616          537 EGQTMDDLEGCTLLHLA-------------------------------------CDSADIGMLELLLQYGANINATDSRG  579 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~A-------------------------------------a~~g~~~~v~~Ll~~gadvn~~d~~G  579 (638)
                      +++|.+|..|+||||+|                                     +..|+.+++++|+++|+++|.+|..|
T Consensus       238 ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G  317 (764)
T PHA02716        238 GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAG  317 (764)
T ss_pred             CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCC
Confidence            99999999999999975                                     34578899999999999999999999


Q ss_pred             CcHHHHHHH--hCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHc------------CCCcHHHHHHHhhCCC
Q 006616          580 LTPLHRCIL--RGKAMFAKLLLTRGADPRAVNREGKTSLELAVES------------NFADSEVLAILSDSHG  638 (638)
Q Consensus       580 ~TpLh~A~~--~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~------------g~~d~eiv~lLle~ga  638 (638)
                      +||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+..            +....+++++|+++||
T Consensus       318 ~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA  390 (764)
T PHA02716        318 RTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA  390 (764)
T ss_pred             CCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence            999999865  4689999999999999999999999999998752            1123899999999986

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.76  E-value=3.9e-18  Score=187.24  Aligned_cols=177  Identities=20%  Similarity=0.275  Sum_probs=102.6

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccc---cCCCcccccccccCCccccccccc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTS---LERSSSSLTGNSSDRSSSGSLNLA  533 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~---~~~~~~~l~~~~~~~~~~~~~lL~  533 (638)
                      ...|+.|+..++.+ ++++|++.|+|++......   ....+.+.++..+.+.   .....++++.+...+....+.+|+
T Consensus        69 ~t~L~~A~~~~~~~-iv~~Ll~~g~~~~~~~~~~---~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll  144 (434)
T PHA02874         69 PHPLLTAIKIGAHD-IIKLLIDNGVDTSILPIPC---IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLF  144 (434)
T ss_pred             CCHHHHHHHcCCHH-HHHHHHHCCCCCCcchhcc---CCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHH
Confidence            35788888887765 4566667777765422111   1223333333322111   011222333333444445555666


Q ss_pred             CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC---------
Q 006616          534 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD---------  604 (638)
Q Consensus       534 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad---------  604 (638)
                      ..|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++         
T Consensus       145 ~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~  224 (434)
T PHA02874        145 EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF  224 (434)
T ss_pred             hCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666654         


Q ss_pred             ----------------------CCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          605 ----------------------PRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       605 ----------------------~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                                            ++.+|.+|.||||+|+..+. +.+++++|+++||
T Consensus       225 TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~-~~~iv~~Ll~~ga  279 (434)
T PHA02874        225 TPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPC-DIDIIDILLYHKA  279 (434)
T ss_pred             CHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCC-cHHHHHHHHHCcC
Confidence                                  44455566666666666542 3567777777664

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.76  E-value=2.9e-18  Score=147.51  Aligned_cols=92  Identities=24%  Similarity=0.456  Sum_probs=70.7

Q ss_pred             EEEEEEeecCC--------CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616          101 RQGYLSKRSSN--------LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV  172 (638)
Q Consensus       101 k~GyL~Kr~~~--------~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  172 (638)
                      ++|||+|..++        ..|+|+||||||+++++||||.....                                   
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~-----------------------------------   45 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP-----------------------------------   45 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC-----------------------------------
Confidence            47999999765        25799999999998899999865421                                   


Q ss_pred             CCccccccceeecccceeecCCCC-CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHH
Q 006616          173 HDEKSAARHTVNLLTSTIKVDADQ-SDLRFCFRIISPTKNYTLQAESALDQMDWIEKIT  230 (638)
Q Consensus       173 ~~~~~~~~~~i~l~~~~v~~~~~~-~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~  230 (638)
                         ...+.+.|+|..|......++ ..+.|||.|++|+|+|+|.|+|++|+++||++|.
T Consensus        46 ---~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          46 ---TTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             ---CcccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence               122345577776655443322 3446999999999999999999999999999986

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.76  E-value=2.2e-18  Score=191.54  Aligned_cols=161  Identities=24%  Similarity=0.252  Sum_probs=82.4

Q ss_pred             hhhhhhcccccCccccccc-hhccc-------hhhHHHHHhhhhcccc---CCCcccccccccCCcccccccccCCCCCC
Q 006616          471 AVYRHIVNFEVDVNAVYEQ-VSCIS-------SLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSSGSLNLAGTSEGQ  539 (638)
Q Consensus       471 ~v~~lLl~~gaDvN~~~~~-~~~~~-------~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~~~~lL~~~~~~~  539 (638)
                      +++++|++.|+|+|..+.. +..+.       +..+++.|+..+.+..   ....++++.+...+...++.+|+..|+++
T Consensus       148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i  227 (477)
T PHA02878        148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST  227 (477)
T ss_pred             HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4788999999999998876 52222       2233334433222110   11122233333333344444555555555


Q ss_pred             CcCCCCCCcHHHHHHHh-CCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          540 TMDDLEGCTLLHLACDS-ADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       540 ~~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      +..|..|.||||+|+.. ++.+++++|+++|+++|.++. .|.||||+|  .++.+++++|+++|||++..|..|.||||
T Consensus       228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~  305 (477)
T PHA02878        228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLS  305 (477)
T ss_pred             CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            55555555555555543 455555555555555555543 455555555  34455555555555555555555555555


Q ss_pred             HHHHcCCCcHHHHHHHh
Q 006616          618 LAVESNFADSEVLAILS  634 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLl  634 (638)
                      +|+..+. +.+++++|+
T Consensus       306 ~A~~~~~-~~~~~~~li  321 (477)
T PHA02878        306 SAVKQYL-CINIGRILI  321 (477)
T ss_pred             HHHHHcC-ccchHHHHH
Confidence            5554331 234444443

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.76  E-value=2.6e-18  Score=149.92  Aligned_cols=95  Identities=21%  Similarity=0.379  Sum_probs=67.9

Q ss_pred             eEEEEEEeecCC----CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616          100 IRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus       100 ~k~GyL~Kr~~~----~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ||+|||+||+.+    .+++|++|||||+ ++.|+||+.+.+.                                     
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~-~~~L~Yyk~~~~~-------------------------------------   42 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLT-KSKLSYYEGDFEK-------------------------------------   42 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEc-CCEEEEECCCccc-------------------------------------
Confidence            589999999754    2359999999997 7788888775431                                     


Q ss_pred             cccccceeecccceee-cCCCC------CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIK-VDADQ------SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~-~~~~~------~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      ...+.+.|+|..+..- ...+.      ..+.|||+|++++++|+|+|+|++|+++||++|+++
T Consensus        43 ~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~  106 (106)
T cd01238          43 RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV  106 (106)
T ss_pred             ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence            1122334555443221 11111      135799999999999999999999999999999863

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>PHA02946 ankyin-like protein; Provisional

Probab=99.76  E-value=2.3e-18  Score=188.74  Aligned_cols=178  Identities=16%  Similarity=0.167  Sum_probs=139.8

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchh---------hHHHHHhhhhcccc----CCCcccccccccC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL---------TLAKAMLLNEQTSL----ERSSSSLTGNSSD  523 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~---------~l~~~ll~~~~~~~----~~~~~~l~~~~~~  523 (638)
                      ...|+.|+..++. +++++|++.|+|+|.++..+..+.++         .+++.|+..+.+..    ....++++++. .
T Consensus        73 ~TpLh~Aa~~g~~-eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~-~  150 (446)
T PHA02946         73 NYPLHIASKINNN-RIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACT-D  150 (446)
T ss_pred             CCHHHHHHHcCCH-HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHH-C
Confidence            3578888887765 56678889999999998888655543         33444554332211    11222333333 3


Q ss_pred             CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCC--HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhC--CHHHHHHHH
Q 006616          524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKLLL  599 (638)
Q Consensus       524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~--~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g--~~~~v~lLl  599 (638)
                      +...++.+|+..|++++..|..|+||||+|+..++  .+++++|+++|+++|.+|..|+||||+|+..+  +.+++++|+
T Consensus       151 ~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl  230 (446)
T PHA02946        151 PSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL  230 (446)
T ss_pred             CChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence            44566777889999999999999999999987654  68999999999999999999999999999986  789999998


Q ss_pred             hCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          600 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       600 ~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      . |++++.+|..|.||||+|+..++ ..+++++|+.+|+
T Consensus       231 ~-gadin~~d~~G~TpLh~A~~~~~-~~~~~~~Ll~~g~  267 (446)
T PHA02946        231 P-STDVNKQNKFGDSPLTLLIKTLS-PAHLINKLLSTSN  267 (446)
T ss_pred             c-CCCCCCCCCCCCCHHHHHHHhCC-hHHHHHHHHhCCC
Confidence            5 89999999999999999999986 3479999999875

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.76  E-value=1.9e-18  Score=164.07  Aligned_cols=107  Identities=23%  Similarity=0.252  Sum_probs=98.6

Q ss_pred             ccccCCCCCCCcCCCCCCcHHHHHHHhCCHH---HHHHHHHcCCCCcccC-CCCCcHHHHHHHhCCHHHHHHHHh-CCCC
Q 006616          530 LNLAGTSEGQTMDDLEGCTLLHLACDSADIG---MLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKLLLT-RGAD  604 (638)
Q Consensus       530 ~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~---~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~lLl~-~gad  604 (638)
                      .+|...+++++..|..|+||||+|+..|+.+   ++++|+.+|+++|.+| ..|.||||+|+..|+.+++++|+. .|++
T Consensus        41 ~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad  120 (166)
T PHA02743         41 PFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN  120 (166)
T ss_pred             HHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC
Confidence            3566788899999999999999999998865   4899999999999998 489999999999999999999995 7999


Q ss_pred             CCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          605 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       605 ~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++.+|..|.||||+|+..++  .+++++|+++||
T Consensus       121 ~~~~d~~g~tpL~~A~~~~~--~~iv~~Ll~~ga  152 (166)
T PHA02743        121 LGAINYQHETAYHIAYKMRD--RRMMEILRANGA  152 (166)
T ss_pred             ccCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            99999999999999999988  899999999986

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.76  E-value=5.2e-18  Score=145.05  Aligned_cols=90  Identities=24%  Similarity=0.380  Sum_probs=71.8

Q ss_pred             EEEEEeecCC-CCCCceeeEEEEec-CceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          102 QGYLSKRSSN-LRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       102 ~GyL~Kr~~~-~~~~WkrRwfvL~~-~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      +|||.|+++. ..++|+||||||++ .+.||||+.+.+                                       ..+
T Consensus         2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d---------------------------------------~~p   42 (95)
T cd01265           2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD---------------------------------------AKP   42 (95)
T ss_pred             cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc---------------------------------------ccc
Confidence            6999999753 47899999999985 357999887532                                       224


Q ss_pred             cceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      .+.|+|..+.+...++  +++++|+|++++|+|+|+|+|++||++||++|+.+
T Consensus        43 ~G~I~L~~~~~~~~~~--~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          43 LGRVDLSGAAFTYDPR--EEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             cceEECCccEEEcCCC--CCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence            4567887776654333  34789999999999999999999999999999875

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.75  E-value=2.3e-18  Score=169.80  Aligned_cols=145  Identities=17%  Similarity=0.184  Sum_probs=118.9

Q ss_pred             cceecccccc-cchhhhhhhcccccCcccccc-chhccchhhHHHHHhhhhccccCCCcccccccc-cCCcccccccccC
Q 006616          458 HQIWEGVRTN-DKKAVYRHIVNFEVDVNAVYE-QVSCISSLTLAKAMLLNEQTSLERSSSSLTGNS-SDRSSSGSLNLAG  534 (638)
Q Consensus       458 ~~L~~Av~~~-d~~~v~~lLl~~gaDvN~~~~-~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~-~~~~~~~~~lL~~  534 (638)
                      ..|+.|+..+ ...+++++|++.|+|+|..+. .+                     .+++++++.. ......++.+|+.
T Consensus        53 TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g---------------------~TpLh~a~~~~~~~~~eiv~~Ll~  111 (209)
T PHA02859         53 TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNN---------------------LSALHHYLSFNKNVEPEILKILID  111 (209)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCC---------------------CCHHHHHHHhCccccHHHHHHHHH
Confidence            5677777654 356778899999999998763 33                     2333333222 2234567778889


Q ss_pred             CCCCCCcCCCCCCcHHHHHHH--hCCHHHHHHHHHcCCCCcccCCCCCcHHHH-HHHhCCHHHHHHHHhCCCCCCCccCC
Q 006616          535 TSEGQTMDDLEGCTLLHLACD--SADIGMLELLLQYGANINATDSRGLTPLHR-CILRGKAMFAKLLLTRGADPRAVNRE  611 (638)
Q Consensus       535 ~~~~~~~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~-A~~~g~~~~v~lLl~~gad~~~~d~~  611 (638)
                      .|++++..|.+|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++.+|..
T Consensus       112 ~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~  191 (209)
T PHA02859        112 SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKS  191 (209)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999999876  468999999999999999999999999995 56778999999999999999999999


Q ss_pred             CCCHHHHHHHcC
Q 006616          612 GKTSLELAVESN  623 (638)
Q Consensus       612 g~TpL~~A~~~g  623 (638)
                      |.|||++|...+
T Consensus       192 g~tpl~la~~~~  203 (209)
T PHA02859        192 GYNCYDLIKFRN  203 (209)
T ss_pred             CCCHHHHHhhhh
Confidence            999999998765

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.75  E-value=7.6e-18  Score=142.49  Aligned_cols=88  Identities=27%  Similarity=0.481  Sum_probs=71.2

Q ss_pred             EEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccccc
Q 006616          102 QGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARH  181 (638)
Q Consensus       102 ~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  181 (638)
                      +|||.|+ ++..++|++|||||+ +|.|+||+++.+.                                     ...+++
T Consensus         2 ~G~L~K~-~~~~k~Wk~RwFvL~-~g~L~Yyk~~~~~-------------------------------------~~~~~G   42 (91)
T cd01247           2 NGVLSKW-TNYINGWQDRYFVLK-EGNLSYYKSEAEK-------------------------------------SHGCRG   42 (91)
T ss_pred             ceEEEEe-ccccCCCceEEEEEE-CCEEEEEecCccC-------------------------------------cCCCcE
Confidence            7999999 557889999999997 7888888876431                                     113456


Q ss_pred             eeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006616          182 TVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       182 ~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      .|+|..|.+...+   .++++|+|.++. ++|+|+|+|++|+++||+||+.
T Consensus        43 ~I~L~~~~i~~~~---~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          43 SIFLKKAIIAAHE---FDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             EEECcccEEEcCC---CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence            7899988888532   236899997666 9999999999999999999975

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.75  E-value=3.5e-18  Score=190.62  Aligned_cols=168  Identities=19%  Similarity=0.224  Sum_probs=130.8

Q ss_pred             hhhhhhhcccccCccccccchhcc---------chhhHHHHHhhhhcccc--CCCcccccccccCC------cccccccc
Q 006616          470 KAVYRHIVNFEVDVNAVYEQVSCI---------SSLTLAKAMLLNEQTSL--ERSSSSLTGNSSDR------SSSGSLNL  532 (638)
Q Consensus       470 ~~v~~lLl~~gaDvN~~~~~~~~~---------~~~~l~~~ll~~~~~~~--~~~~~~l~~~~~~~------~~~~~~lL  532 (638)
                      .+++++|++.|+|||..+ .+...         .+..+++.|+..+.+..  +...++++++..+.      ...++.+|
T Consensus        16 ~~~v~~LL~~GadvN~~~-~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~L   94 (494)
T PHA02989         16 KNALEFLLRTGFDVNEEY-RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLL   94 (494)
T ss_pred             HHHHHHHHHcCCCccccc-CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHH
Confidence            456778889999999873 23221         13467777776654422  11233344433322      23467889


Q ss_pred             cCCCCCCCcCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHh--CCHHHHHHHHhCCCCCC
Q 006616          533 AGTSEGQTMDDLEGCTLLHLACDS---ADIGMLELLLQYGANI-NATDSRGLTPLHRCILR--GKAMFAKLLLTRGADPR  606 (638)
Q Consensus       533 ~~~~~~~~~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~--g~~~~v~lLl~~gad~~  606 (638)
                      +..|+++|..|..|.||||.|+..   ++.+++++|+++|||+ +.+|..|+||||+|+..  ++.++|++|+++|++++
T Consensus        95 l~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~  174 (494)
T PHA02989         95 LKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF  174 (494)
T ss_pred             HHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence            999999999999999999988765   6799999999999999 89999999999998764  68999999999999999


Q ss_pred             C-ccCCCCCHHHHHHHcCC--CcHHHHHHHhhCCC
Q 006616          607 A-VNREGKTSLELAVESNF--ADSEVLAILSDSHG  638 (638)
Q Consensus       607 ~-~d~~g~TpL~~A~~~g~--~d~eiv~lLle~ga  638 (638)
                      . .+..|.||||+|+..+.  .+.+++++|+++||
T Consensus       175 ~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga  209 (494)
T PHA02989        175 EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV  209 (494)
T ss_pred             ccccccCCChHHHHHhcccccccHHHHHHHHhCCC
Confidence            8 68899999999988752  34899999999986

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.75  E-value=4.8e-18  Score=196.94  Aligned_cols=180  Identities=21%  Similarity=0.234  Sum_probs=135.2

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchh--------hHHHHHhhhhc-----cccCCCcccccccccC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL--------TLAKAMLLNEQ-----TSLERSSSSLTGNSSD  523 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~--------~l~~~ll~~~~-----~~~~~~~~~l~~~~~~  523 (638)
                      ...|+.|+..++...++++|++.|+|+|..+..+..+.++        ..++.++..+.     +..+.+++++++ ..+
T Consensus       274 ~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~-~~~  352 (682)
T PHA02876        274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS-TLD  352 (682)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHH-HhC
Confidence            3567888888887778888888888888877766444332        22333333221     122334444333 234


Q ss_pred             CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC-HHHHHHHHhCC
Q 006616          524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKLLLTRG  602 (638)
Q Consensus       524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-~~~v~lLl~~g  602 (638)
                      ....++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|
T Consensus       353 ~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g  432 (682)
T PHA02876        353 RNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG  432 (682)
T ss_pred             CcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC
Confidence            44556777888899999999999999999999999999999999999999999999999999987665 46788999999


Q ss_pred             CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       603 ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++++.+|..|.||||+|+..+. ..+++++|+++||
T Consensus       433 adin~~d~~G~TpLh~Aa~~~~-~~~iv~lLl~~Ga  467 (682)
T PHA02876        433 ANVNSKNKDLSTPLHYACKKNC-KLDVIEMLLDNGA  467 (682)
T ss_pred             CCCCcCCCCCChHHHHHHHhCC-cHHHHHHHHHCCC
Confidence            9999999999999999988763 3789999998886

>PHA02798 ankyrin-like protein; Provisional

Probab=99.75  E-value=3.8e-18  Score=190.09  Aligned_cols=179  Identities=16%  Similarity=0.126  Sum_probs=135.6

Q ss_pred             cceeccccc----ccchhhhhhhcccccCccccccchhccch----------hhHHHHHhhhhcc-----ccCCCccccc
Q 006616          458 HQIWEGVRT----NDKKAVYRHIVNFEVDVNAVYEQVSCISS----------LTLAKAMLLNEQT-----SLERSSSSLT  518 (638)
Q Consensus       458 ~~L~~Av~~----~d~~~v~~lLl~~gaDvN~~~~~~~~~~~----------~~l~~~ll~~~~~-----~~~~~~~~l~  518 (638)
                      ..|+.++..    .....++++|++.|+|+|..+..+.++.+          ..++++|+..+.+     ..+.++++++
T Consensus        73 TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a  152 (489)
T PHA02798         73 TPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVY  152 (489)
T ss_pred             ChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHH
Confidence            445555432    23467888999999999998887744433          3455555554433     2234455444


Q ss_pred             ccccC-CcccccccccCCCCCCCcCC-CCCCcHHHHHHHh----CCHHHHHHHHHcCCC---------------------
Q 006616          519 GNSSD-RSSSGSLNLAGTSEGQTMDD-LEGCTLLHLACDS----ADIGMLELLLQYGAN---------------------  571 (638)
Q Consensus       519 ~~~~~-~~~~~~~lL~~~~~~~~~~d-~~G~TpLh~Aa~~----g~~~~v~~Ll~~gad---------------------  571 (638)
                      +.... ....++.+|+..|++++..+ ..|.||||.++..    ++.+++++|+++|++                     
T Consensus       153 ~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~  232 (489)
T PHA02798        153 LQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLY  232 (489)
T ss_pred             HHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHh
Confidence            44433 33667788889999999875 5789999988764    368888888887764                     


Q ss_pred             ------------------CcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616          572 ------------------INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL  633 (638)
Q Consensus       572 ------------------vn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lL  633 (638)
                                        +|.+|..|+||||+|+..|+.+++++||++|||++.+|..|.|||++|+..++  .++++.|
T Consensus       233 ~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~--~~iv~~l  310 (489)
T PHA02798        233 DNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES--KFIFNSI  310 (489)
T ss_pred             hcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc--HHHHHHH
Confidence                              44567789999999999999999999999999999999999999999999987  8899999


Q ss_pred             hhCCC
Q 006616          634 SDSHG  638 (638)
Q Consensus       634 le~ga  638 (638)
                      +++|+
T Consensus       311 L~~~~  315 (489)
T PHA02798        311 LNKKP  315 (489)
T ss_pred             HccCC
Confidence            98874

>PHA02946 ankyin-like protein; Provisional

Probab=99.74  E-value=6.7e-18  Score=185.03  Aligned_cols=168  Identities=14%  Similarity=0.216  Sum_probs=136.1

Q ss_pred             ccchhhhhhhcccccCccccccchhccch-------hhHHHHHhhhhcc-----ccCCCcccccccccCCcccccccccC
Q 006616          467 NDKKAVYRHIVNFEVDVNAVYEQVSCISS-------LTLAKAMLLNEQT-----SLERSSSSLTGNSSDRSSSGSLNLAG  534 (638)
Q Consensus       467 ~d~~~v~~lLl~~gaDvN~~~~~~~~~~~-------~~l~~~ll~~~~~-----~~~~~~~~l~~~~~~~~~~~~~lL~~  534 (638)
                      +...+++++|++.|+|||..+..+.++.+       ..+++.|+..+.+     ..+.+++++++.........+.+|+.
T Consensus        49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~  128 (446)
T PHA02946         49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ  128 (446)
T ss_pred             CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            33456788888999999999988855544       4666777665432     34456666555444444566778899


Q ss_pred             CCCCCCc-CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhC--CHHHHHHHHhCCCCCCCccCC
Q 006616          535 TSEGQTM-DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKLLLTRGADPRAVNRE  611 (638)
Q Consensus       535 ~~~~~~~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g--~~~~v~lLl~~gad~~~~d~~  611 (638)
                      .|++++. .|.+|.|||| ||..|+.+++++|++.|++++.+|..|+||||+|+..+  +.+++++|+++|++++.+|.+
T Consensus       129 ~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~  207 (446)
T PHA02946        129 YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHD  207 (446)
T ss_pred             cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCC
Confidence            9999995 6889999998 66679999999999999999999999999999998765  468999999999999999999


Q ss_pred             CCCHHHHHHHcCCCcHHHHHHHhh
Q 006616          612 GKTSLELAVESNFADSEVLAILSD  635 (638)
Q Consensus       612 g~TpL~~A~~~g~~d~eiv~lLle  635 (638)
                      |.||||+|+..+..+.+++++|++
T Consensus       208 G~TpLH~Aa~~~~~~~~iv~lLl~  231 (446)
T PHA02946        208 GNTPLHIVCSKTVKNVDIINLLLP  231 (446)
T ss_pred             CCCHHHHHHHcCCCcHHHHHHHHc
Confidence            999999999987555889999985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.73  E-value=9.2e-18  Score=197.67  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=134.1

Q ss_pred             cccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCC
Q 006616          456 VAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT  535 (638)
Q Consensus       456 ~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~  535 (638)
                      ....|+.|+..|+...+ +.|++.|+|+|..|..+                       .++++.++..+...++.+|+..
T Consensus       525 ~~~~L~~Aa~~g~~~~l-~~Ll~~G~d~n~~d~~G-----------------------~TpLh~Aa~~g~~~~v~~Ll~~  580 (823)
T PLN03192        525 MASNLLTVASTGNAALL-EELLKAKLDPDIGDSKG-----------------------RTPLHIAASKGYEDCVLVLLKH  580 (823)
T ss_pred             chhHHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCC-----------------------CCHHHHHHHcChHHHHHHHHhc
Confidence            34678899998887655 55568999999988766                       2334444455666777888999


Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCH
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS  615 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~Tp  615 (638)
                      |++++..|.+|.||||+|+..|+.+++++|+..++..+.  ..|.++||.|+..|+.+++++|+++|+|++.+|.+|.||
T Consensus       581 gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~Tp  658 (823)
T PLN03192        581 ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA  658 (823)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            999999999999999999999999999999998877654  457799999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHhhCCC
Q 006616          616 LELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||+|+..|+  .+++++|+++||
T Consensus       659 Lh~A~~~g~--~~iv~~Ll~~GA  679 (823)
T PLN03192        659 LQVAMAEDH--VDMVRLLIMNGA  679 (823)
T ss_pred             HHHHHHCCc--HHHHHHHHHcCC
Confidence            999999998  899999999986

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.73  E-value=6.2e-18  Score=195.07  Aligned_cols=179  Identities=23%  Similarity=0.333  Sum_probs=144.2

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchh-------hHHHHHhhhh---ccccCCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL-------TLAKAMLLNE---QTSLERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~-------~l~~~ll~~~---~~~~~~~~~~l~~~~~~~~~~  527 (638)
                      ..++.|+..+...++..++...|+|+|.....+..+.++       .....++...   ........+.++.+.......
T Consensus       442 T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~  521 (1143)
T KOG4177|consen  442 TPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVK  521 (1143)
T ss_pred             ChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHH
Confidence            456677777767777777788899999988877554433       3444443322   111122233444444444555


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      +...+...|++++.++.+|.||||+||..|++.+|++||++|||++++|+.|+||||.||..|+.+|+.+|+++||++|.
T Consensus       522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            66678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .|.+|.|||++|+..|+  .+++++|+..++
T Consensus       602 ~d~~g~TpL~iA~~lg~--~~~~k~l~~~~~  630 (1143)
T KOG4177|consen  602 ADLDGFTPLHIAVRLGY--LSVVKLLKVVTA  630 (1143)
T ss_pred             ccccCcchhHHHHHhcc--cchhhHHHhccC
Confidence            99999999999999999  789999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.72  E-value=1.4e-17  Score=185.67  Aligned_cols=152  Identities=19%  Similarity=0.231  Sum_probs=124.9

Q ss_pred             chhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCCCCCc
Q 006616          469 KKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCT  548 (638)
Q Consensus       469 ~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~T  548 (638)
                      ..+++++|++.|+|||..+..+..+.+..+..                  .........++.+|+..|+++|..|..|+|
T Consensus        50 ~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n------------------~~~~~~~~~iv~~Ll~~GadiN~~d~~G~T  111 (489)
T PHA02798         50 STDIVKLFINLGANVNGLDNEYSTPLCTILSN------------------IKDYKHMLDIVKILIENGADINKKNSDGET  111 (489)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCChHHHHHHh------------------HHhHHhHHHHHHHHHHCCCCCCCCCCCcCc
Confidence            56788999999999999887773222211100                  000112356778899999999999999999


Q ss_pred             HHHHHHHhC---CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC---HHHHHHHHhCCCCCCCcc-CCCCCHHHHHHH
Q 006616          549 LLHLACDSA---DIGMLELLLQYGANINATDSRGLTPLHRCILRGK---AMFAKLLLTRGADPRAVN-REGKTSLELAVE  621 (638)
Q Consensus       549 pLh~Aa~~g---~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~---~~~v~lLl~~gad~~~~d-~~g~TpL~~A~~  621 (638)
                      |||+|+..+   +.+++++|+++|+++|.+|..|.||||+|+..++   .+++++|+++|++++..+ ..|.||||.++.
T Consensus       112 pLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~  191 (489)
T PHA02798        112 PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFK  191 (489)
T ss_pred             HHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHH
Confidence            999999876   6899999999999999999999999999999998   999999999999999885 578999999987


Q ss_pred             cC--CCcHHHHHHHhhCCC
Q 006616          622 SN--FADSEVLAILSDSHG  638 (638)
Q Consensus       622 ~g--~~d~eiv~lLle~ga  638 (638)
                      .+  ..+.+++++|+++|+
T Consensus       192 ~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        192 YNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             hccccCCHHHHHHHHHCCC
Confidence            54  235899999999985

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.71  E-value=6.5e-17  Score=139.01  Aligned_cols=91  Identities=27%  Similarity=0.554  Sum_probs=71.1

Q ss_pred             EEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616          101 RQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus       101 k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ++|||+|+++.   ..+.|+||||||. ++.|+||+.+.+                                       .
T Consensus         2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~-~~~L~yyk~~~~---------------------------------------~   41 (96)
T cd01260           2 CDGWLWKRKKPGGFMGQKWARRWFVLK-GTTLYWYRSKQD---------------------------------------E   41 (96)
T ss_pred             ceeEEEEecCCCCccccCceeEEEEEE-CCEEEEECCCCC---------------------------------------C
Confidence            58999999643   3458999999999 577777776532                                       1


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      .+.+.|.|..++|... .+..++|||.|.+|+ ++|+|+|+|++|+.+||.+|++|
T Consensus        42 ~~~~~I~L~~~~v~~~-~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          42 KAEGLIFLSGFTIESA-KEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             ccceEEEccCCEEEEc-hhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            1234577777777653 234588999999999 99999999999999999999864

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.70  E-value=8.5e-17  Score=137.53  Aligned_cols=93  Identities=41%  Similarity=0.740  Sum_probs=72.0

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      |+|||.|+++...+.|++|||+|. ++.|+||......                                     ...+.
T Consensus         1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~-------------------------------------~~~~~   42 (94)
T cd01250           1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDY-------------------------------------DNAHV   42 (94)
T ss_pred             CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCccc-------------------------------------ccccc
Confidence            589999997655678999999998 6777777664321                                     01122


Q ss_pred             ceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      ..|+|..+++....+..++++||.|++++++|+|+|+|++|+++||.||++
T Consensus        43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          43 KEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             eEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence            347777777776544434789999999999999999999999999999975

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.70  E-value=8.6e-17  Score=137.92  Aligned_cols=94  Identities=21%  Similarity=0.364  Sum_probs=70.3

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCc-----eEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRG-----MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~-----~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ++|+|||.|+     ++|+||||||+.+.     .|.||++.......                                
T Consensus         2 v~k~GyL~K~-----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~--------------------------------   44 (101)
T cd01257           2 VRKSGYLRKQ-----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQK--------------------------------   44 (101)
T ss_pred             ccEEEEEeEe-----cCcEeEEEEEecCCCCCCceEEEECChhhcccc--------------------------------
Confidence            4699999998     68999999999642     78888876431100                                


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                        ...+.+.|+|..|..-....+..++|+|.|.||+++|+|+|+|++|+++||.+|..
T Consensus        45 --~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          45 --GSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             --CCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence              02244567887776443233334569999999999999999999999999999864

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.70  E-value=2.8e-17  Score=154.01  Aligned_cols=171  Identities=17%  Similarity=0.106  Sum_probs=124.0

Q ss_pred             eecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhh----------hhccccCCCcccccccccCCccccc
Q 006616          460 IWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLL----------NEQTSLERSSSSLTGNSSDRSSSGS  529 (638)
Q Consensus       460 L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~----------~~~~~~~~~~~~l~~~~~~~~~~~~  529 (638)
                      ++-+.-.+ ....+++++.+|+..|..+.-+....++.+-+.-+.          +.-+..+.+++.  .++..+...++
T Consensus       100 ~~v~ap~~-s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLi--WAaa~G~i~vV  176 (296)
T KOG0502|consen  100 LLVAAPCG-SVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLI--WAAAKGHIPVV  176 (296)
T ss_pred             hhhcCCCC-CcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhH--HHHhcCchHHH
Confidence            33333334 333445666888888877666655555443332111          222233344444  44445566678


Q ss_pred             ccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc
Q 006616          530 LNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN  609 (638)
Q Consensus       530 ~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d  609 (638)
                      .+|+..|++++....+..|+|.+|+..|..++|++||.++.|||..|.+|-|||-||++.+|.+||+.||..||+++..+
T Consensus       177 ~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  177 QFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             HHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence            88888888888888888889999988888899999998888998888888899999988888999999988899988888


Q ss_pred             CCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          610 REGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       610 ~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      ..|++++.+|+..|+   .+|+..+|.
T Consensus       257 dsGy~~mdlAValGy---r~Vqqvie~  280 (296)
T KOG0502|consen  257 DSGYWIMDLAVALGY---RIVQQVIEK  280 (296)
T ss_pred             ccCCcHHHHHHHhhh---HHHHHHHHH
Confidence            888999999888886   377777664

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=2.1e-17  Score=149.44  Aligned_cols=116  Identities=27%  Similarity=0.284  Sum_probs=101.5

Q ss_pred             ccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHH
Q 006616          519 GNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL  598 (638)
Q Consensus       519 ~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lL  598 (638)
                      ++..+....+..+|......+|.+|.+|.||||-|+++|+++||+.|+..||+++++...||||||-||.-.+.+|+-+|
T Consensus        70 aae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~L  149 (228)
T KOG0512|consen   70 AAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRL  149 (228)
T ss_pred             HHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHH
Confidence            34444445555666677778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhh
Q 006616          599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSD  635 (638)
Q Consensus       599 l~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle  635 (638)
                      |++|||||+......||||+|+...+ ....+.+|+.
T Consensus       150 LqhgaDVnA~t~g~ltpLhlaa~~rn-~r~t~~~Ll~  185 (228)
T KOG0512|consen  150 LQHGADVNAQTKGLLTPLHLAAGNRN-SRDTLELLLH  185 (228)
T ss_pred             HhccCcccccccccchhhHHhhcccc-hHHHHHHHhh
Confidence            99999999999999999999998875 3456666664

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=99.69  E-value=5.3e-17  Score=137.10  Aligned_cols=96  Identities=27%  Similarity=0.488  Sum_probs=69.7

Q ss_pred             EEEEEEeecCCCCC-CceeeEEEEec-CceEEE---EecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616          101 RQGYLSKRSSNLRG-DWKRRFFVLDS-RGMLYY---YRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus       101 k~GyL~Kr~~~~~~-~WkrRwfvL~~-~~~l~y---~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      |+||||+|.+...+ +|.|.||.++. ++.+.+   ..+... ..                            .|.+   
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~-~~----------------------------~g~v---   48 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKT-DM----------------------------KGAV---   48 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccccc-cc----------------------------Cccc---
Confidence            58999999876554 89999999886 334322   111000 00                            0111   


Q ss_pred             cccccceeecccceeecCCCCCCCcceEEEecCCe--eEEEEeCCHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~r--t~~lqA~se~e~~~Wi~ai~~  231 (638)
                        ...+.|.|..|++++ .+..||||||+|+++++  +++|||+|++|+.+||+||++
T Consensus        49 --~~~e~~~l~sc~~r~-~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg  103 (104)
T cd01249          49 --AQDETLTLKSCSRRK-TESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG  103 (104)
T ss_pred             --ccceEEeeeeccccc-cCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence              122458899999997 56779999999999987  899999999999999999864

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.69  E-value=1.5e-16  Score=138.05  Aligned_cols=91  Identities=29%  Similarity=0.537  Sum_probs=67.3

Q ss_pred             EEEEEeecCCCCCCceeeEEEEec-CceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          102 QGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       102 ~GyL~Kr~~~~~~~WkrRwfvL~~-~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      +|||.|+++ ..+.|++|||||.. ++.|+||++... .|.                                       
T Consensus         2 ~G~L~K~g~-~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~---------------------------------------   41 (101)
T cd01235           2 EGYLYKRGA-LLKGWKPRWFVLDPDKHQLRYYDDFEDTAEK---------------------------------------   41 (101)
T ss_pred             eEEEEEcCC-CCCCccceEEEEECCCCEEEEecCCCCCccc---------------------------------------
Confidence            799999955 57899999999986 457888876532 222                                       


Q ss_pred             cceeecccce-eec------CCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTST-IKV------DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       180 ~~~i~l~~~~-v~~------~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                       +.|+|..++ +..      .+....+.++|.|.++.|+|+|+|+|++|+++||.+|+++|
T Consensus        42 -g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          42 -GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             -eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence             334554322 211      01222457899999999999999999999999999999875

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=2.9e-16  Score=171.32  Aligned_cols=173  Identities=21%  Similarity=0.226  Sum_probs=139.8

Q ss_pred             ccccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616          455 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG  534 (638)
Q Consensus       455 ~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~  534 (638)
                      .....|+.|+..||.+.+..+| ..|+.+...--+      -......+.++.++.+.+++++++  ..+....+-+|+.
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L-~n~~~~a~~~~~------~~~q~kelv~~~d~dg~tpLH~a~--r~G~~~svd~Ll~  294 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCL-QNGKKIADVQLD------AMQQEKELVNDEDNDGCTPLHYAA--RQGGPESVDNLLG  294 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHH-hCccccchhhhH------HHHHHHHHhhcccccCCchHHHHH--HcCChhHHHHHHH
Confidence            4557899999999999887776 555433211100      112223444556666666666554  4555566788999


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHH-cC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC---Ccc
Q 006616          535 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQ-YG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR---AVN  609 (638)
Q Consensus       535 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~g-advn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~---~~d  609 (638)
                      .|++++.++.++.||||.||.+|+..+|+.||+ .| ...|..|..|.||||+|+..||..++++||+.||...   ..|
T Consensus       295 ~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D  374 (929)
T KOG0510|consen  295 FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEAD  374 (929)
T ss_pred             cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccc
Confidence            999999999999999999999999999999999 55 5789999999999999999999999999999999987   459


Q ss_pred             CCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          610 REGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       610 ~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+|.||||+|+..|+  ..+|++|+.+||
T Consensus       375 ~dg~TaLH~Aa~~g~--~~av~~Li~~Ga  401 (929)
T KOG0510|consen  375 SDGNTALHLAAKYGN--TSAVQKLISHGA  401 (929)
T ss_pred             cCCchhhhHHHHhcc--HHHHHHHHHcCC
Confidence            999999999999998  889999999996

>PHA02741 hypothetical protein; Provisional

Probab=99.69  E-value=8.9e-17  Score=153.18  Aligned_cols=102  Identities=25%  Similarity=0.380  Sum_probs=94.9

Q ss_pred             CCCCCCCcCCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHh-CCCCCCC
Q 006616          534 GTSEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLT-RGADPRA  607 (638)
Q Consensus       534 ~~~~~~~~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~-~gad~~~  607 (638)
                      ..|++++..|..|.||||+|+..|+    .+++++|+.+|+++|.++. .|+||||+|+..++.+++++|+. .|++++.
T Consensus        48 ~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~  127 (169)
T PHA02741         48 CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF  127 (169)
T ss_pred             hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc
Confidence            3468899999999999999999999    5899999999999999985 89999999999999999999998 5999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~g  637 (638)
                      +|.+|.||||+|+..++  .+++++|++.+
T Consensus       128 ~n~~g~tpL~~A~~~~~--~~iv~~L~~~~  155 (169)
T PHA02741        128 CNADNKSPFELAIDNED--VAMMQILREIV  155 (169)
T ss_pred             CCCCCCCHHHHHHHCCC--HHHHHHHHHHH
Confidence            99999999999999987  89999998764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.68  E-value=1.2e-16  Score=160.01  Aligned_cols=167  Identities=22%  Similarity=0.232  Sum_probs=125.0

Q ss_pred             hhhccCCCCcccccccccceecccccccchhhhhhhcccc-cCccccccchhccchhhHHHHHhhhhccccCCCcccccc
Q 006616          441 KLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFE-VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTG  519 (638)
Q Consensus       441 k~fv~~~~~~~~~~~~~~~L~~Av~~~d~~~v~~lLl~~g-aDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~  519 (638)
                      ..|+....+.+    -+.+|+.+|...|...|..|| +.| +|||..+..|..+..+.....|.                
T Consensus       257 L~yvVNlaDsN----GNTALHYsVSHaNF~VV~~LL-DSgvC~VD~qNrAGYtpiMLaALA~lk----------------  315 (452)
T KOG0514|consen  257 LEYVVNLADSN----GNTALHYAVSHANFDVVSILL-DSGVCDVDQQNRAGYTPVMLAALAKLK----------------  315 (452)
T ss_pred             HHHHhhhhcCC----CCeeeeeeecccchHHHHHHh-ccCcccccccccccccHHHHHHHHhhc----------------
Confidence            34455555543    357999999999988766555 655 69998887774333322221111                


Q ss_pred             cccCCcccccccccCCCCCCCcC-CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHH
Q 006616          520 NSSDRSSSGSLNLAGTSEGQTMD-DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL  598 (638)
Q Consensus       520 ~~~~~~~~~~~lL~~~~~~~~~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lL  598 (638)
                        ......+++-|-..| |||.+ ...|+|+|++|+.+|+.++|+.||..|||||.+|.+|.|+|++|+..||.|||++|
T Consensus       316 --~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklL  392 (452)
T KOG0514|consen  316 --QPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLL  392 (452)
T ss_pred             --chhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHH
Confidence              111112222233332 45544 34699999999999999999999999999999999999999999999999999999


Q ss_pred             HhC-CCCCCCccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616          599 LTR-GADPRAVNREGKTSLELAVESNFADSEVLAIL  633 (638)
Q Consensus       599 l~~-gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lL  633 (638)
                      |.. ++|+...|.+|.|+|.+|...||  .||.-||
T Consensus       393 LA~p~cd~sLtD~DgSTAl~IAleagh--~eIa~ml  426 (452)
T KOG0514|consen  393 LAVPSCDISLTDVDGSTALSIALEAGH--REIAVML  426 (452)
T ss_pred             hccCcccceeecCCCchhhhhHHhcCc--hHHHHHH
Confidence            987 89999999999999999999999  6666555

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.68  E-value=7.9e-17  Score=186.83  Aligned_cols=176  Identities=19%  Similarity=0.177  Sum_probs=139.4

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchh--------hHHHHHhhhhc-----cccCCCcccccccccC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL--------TLAKAMLLNEQ-----TSLERSSSSLTGNSSD  523 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~--------~l~~~ll~~~~-----~~~~~~~~~l~~~~~~  523 (638)
                      ...|+.|+..+....++++|+..|+|+|..+..+..+.+.        .++..++..+.     +..+.+  +++.+...
T Consensus       308 ~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~T--pLh~Aa~~  385 (682)
T PHA02876        308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKT--PIHYAAVR  385 (682)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCC--HHHHHHHc
Confidence            3567888888766677788888899998887766444333        23333333221     122334  44445556


Q ss_pred             CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCC-HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhC-CHHHHHHHHhC
Q 006616          524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD-IGMLELLLQYGANINATDSRGLTPLHRCILRG-KAMFAKLLLTR  601 (638)
Q Consensus       524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~-~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g-~~~~v~lLl~~  601 (638)
                      +...++.+|+..|++++..+..|.||||+|+..++ ..++++|+++|+++|.+|..|+||||+|+..+ +.+++++|+++
T Consensus       386 ~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~  465 (682)
T PHA02876        386 NNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN  465 (682)
T ss_pred             CCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence            66778888999999999999999999999998766 56789999999999999999999999999977 68999999999


Q ss_pred             CCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       602 gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |++++.+|..|.|||++|+..+    +++++|++.||
T Consensus       466 Gad~n~~d~~g~tpl~~a~~~~----~~v~~Ll~~~a  498 (682)
T PHA02876        466 GADVNAINIQNQYPLLIALEYH----GIVNILLHYGA  498 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhC----CHHHHHHHCCC
Confidence            9999999999999999999875    37888988775

>PHA02917 ankyrin-like protein; Provisional

Probab=99.68  E-value=1.1e-16  Score=182.45  Aligned_cols=152  Identities=22%  Similarity=0.214  Sum_probs=121.1

Q ss_pred             ceecccccccc-hhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          459 QIWEGVRTNDK-KAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       459 ~L~~Av~~~d~-~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      .++.++..++. ..++++|++.|||||..+..+.                     +     +........+..+|...|+
T Consensus       334 ~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~---------------------~-----~~~~~~~~~i~~LL~~~ga  387 (661)
T PHA02917        334 ILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGY---------------------F-----RNINIDSYTMKYLLKKEGG  387 (661)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHcCCCCCCCCcccc---------------------c-----hhhcCCHHHHHHHHHhcCC
Confidence            34556656653 3578999999999997655441                     0     0112222334455556788


Q ss_pred             CCCcCCCCCCcHHHHHHHhC-----------------------CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSA-----------------------DIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF  594 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g-----------------------~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~  594 (638)
                      +++..+.+|.||||.|+..+                       ..+++++|+.+|||+|.+|..|+||||+|+..++.++
T Consensus       388 ~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~  467 (661)
T PHA02917        388 DAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSL  467 (661)
T ss_pred             CccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHH
Confidence            87777888999999987533                       3567899999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCccCCCCCHHHHHHH-cCCCcHHHHHHHhhCCC
Q 006616          595 AKLLLTRGADPRAVNREGKTSLELAVE-SNFADSEVLAILSDSHG  638 (638)
Q Consensus       595 v~lLl~~gad~~~~d~~g~TpL~~A~~-~g~~d~eiv~lLle~ga  638 (638)
                      +++|+++|++++.+|..|.||||+|+. .++  .+++++|+.+|+
T Consensus       468 v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~--~~iv~~LL~~ga  510 (661)
T PHA02917        468 VSLLLESGSDVNIRSNNGYTCIAIAINESRN--IELLKMLLCHKP  510 (661)
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHhCCC--HHHHHHHHHcCC
Confidence            999999999999999999999999996 555  899999999875

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.67  E-value=4.4e-16  Score=140.52  Aligned_cols=92  Identities=29%  Similarity=0.629  Sum_probs=71.8

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      |+|||.|+++ ..+.|++|||+|. ++.|+||+....                                       ..+.
T Consensus         2 k~G~L~K~~~-~~~~WkkRwfvL~-~~~L~yyk~~~~---------------------------------------~~~~   40 (125)
T cd01252           2 REGWLLKQGG-RVKTWKRRWFILT-DNCLYYFEYTTD---------------------------------------KEPR   40 (125)
T ss_pred             cEEEEEEeCC-CCCCeEeEEEEEE-CCEEEEEcCCCC---------------------------------------CCce
Confidence            7899999965 4678999999998 567788876432                                       1234


Q ss_pred             ceeecccceeecCCCCCCCcceEEEecCC---------------------eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISPT---------------------KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~---------------------rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      +.|.|..+.|.... +..+++||+|.+++                     ++|+|+|+|++|+.+||.+|+.+|.
T Consensus        41 g~I~L~~~~v~~~~-~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~  114 (125)
T cd01252          41 GIIPLENVSIREVE-DPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS  114 (125)
T ss_pred             EEEECCCcEEEEcc-cCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence            45777777776532 34678999998766                     4889999999999999999999875

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.67  E-value=2e-16  Score=162.35  Aligned_cols=109  Identities=22%  Similarity=0.183  Sum_probs=97.4

Q ss_pred             cccccccCCcccccccccCCCCCCCcCC----CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHhC
Q 006616          516 SLTGNSSDRSSSGSLNLAGTSEGQTMDD----LEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRG  590 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d----~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g  590 (638)
                      .+..+...+...++.+|+..|++++..+    ..|.||||+|+..++.+++++|+++||++|..+ ..|.||||+|+..+
T Consensus        36 lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~  115 (300)
T PHA02884         36 ILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHG  115 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcC
Confidence            3444445556778888999999999874    589999999999999999999999999999864 57999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCC
Q 006616          591 KAMFAKLLLTRGADPRAVNREGKTSLELAVESNF  624 (638)
Q Consensus       591 ~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~  624 (638)
                      +.+++++|+.+|++++.+|..|.||||+|+..++
T Consensus       116 ~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~  149 (300)
T PHA02884        116 CLKCLEILLSYGADINIQTNDMVTPIELALMICN  149 (300)
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Confidence            9999999999999999999999999999998654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.67  E-value=1.5e-16  Score=169.62  Aligned_cols=153  Identities=10%  Similarity=-0.041  Sum_probs=123.0

Q ss_pred             ccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCCCC
Q 006616          467 NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEG  546 (638)
Q Consensus       467 ~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G  546 (638)
                      .+..+++++|+.+|+++|....-             +  .......+.++..+...++...++.+|+..||+++..  ++
T Consensus        87 ~~~k~~~~~l~s~~~~~~~~~~~-------------~--~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~  149 (437)
T PHA02795         87 ITYKDIISALVSKNYMEDIFSII-------------I--KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--EC  149 (437)
T ss_pred             cchHHHHHHHHhcccccchhhhh-------------h--hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CC
Confidence            45566778888888888832100             0  0111123445555555578888999999999999985  46


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCc-cc-----CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHH
Q 006616          547 CTLLHLACDSADIGMLELLLQYGANIN-AT-----DSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV  620 (638)
Q Consensus       547 ~TpLh~Aa~~g~~~~v~~Ll~~gadvn-~~-----d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~  620 (638)
                      .||||+|+..++.+++++|+.+|++.+ ..     +..+.|++|.|+..++.+++++|+++||+++.+|..|.||||+|+
T Consensus       150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa  229 (437)
T PHA02795        150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAI  229 (437)
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHH
Confidence            899999999999999999999998533 22     134789999999999999999999999999999999999999999


Q ss_pred             HcCCCcHHHHHHHhhCCC
Q 006616          621 ESNFADSEVLAILSDSHG  638 (638)
Q Consensus       621 ~~g~~d~eiv~lLle~ga  638 (638)
                      ..|+  .+++++|+++||
T Consensus       230 ~~g~--~eiVelLL~~GA  245 (437)
T PHA02795        230 YAGY--IDLVSWLLENGA  245 (437)
T ss_pred             HcCC--HHHHHHHHHCCC
Confidence            9998  899999999996

>PHA02730 ankyrin-like protein; Provisional

Probab=99.66  E-value=1.9e-16  Score=176.57  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=122.8

Q ss_pred             ceeccccccc--chhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCC--cccccccccC
Q 006616          459 QIWEGVRTND--KKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDR--SSSGSLNLAG  534 (638)
Q Consensus       459 ~L~~Av~~~d--~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~--~~~~~~lL~~  534 (638)
                      -|+.-+..++  ..+++++|+++|||+|.. ..+                     .++++.++...+.  ...++.+|+.
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G---------------------~TpLH~Aa~~nnn~i~~eIvelLIs  403 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDN---------------------NYPLHDYFVNNNNIVDVNVVRFIVE  403 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCC---------------------CcHHHHHHHHcCCcchHHHHHHHHH
Confidence            3444555564  467889999999999974 333                     2333333333221  2567777887


Q ss_pred             CCC--CCCcCCCCCCcHHHH---HHHhC---------CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616          535 TSE--GQTMDDLEGCTLLHL---ACDSA---------DIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT  600 (638)
Q Consensus       535 ~~~--~~~~~d~~G~TpLh~---Aa~~g---------~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~  600 (638)
                      .|+  +++..|..|.||||.   |...+         ..+++++|+.+||++|.+|..|.||||+|+..++.+++++|++
T Consensus       404 ~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~  483 (672)
T PHA02730        404 NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE  483 (672)
T ss_pred             cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            776  689999999999994   33222         2357999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccC-CCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          601 RGADPRAVNR-EGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       601 ~gad~~~~d~-~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +||+++.+|. .|.||||+|+..+....+++++|+++|+
T Consensus       484 ~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga  522 (672)
T PHA02730        484 YGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHP  522 (672)
T ss_pred             CCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence            9999999997 5999999998752223899999999986

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.66  E-value=2.3e-16  Score=133.91  Aligned_cols=91  Identities=21%  Similarity=0.302  Sum_probs=70.5

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEec---CceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDS---RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~---~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      +.|||.|++++..|+||+|||+|..   ++.|||++....+                                       
T Consensus         1 ~~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~---------------------------------------   41 (98)
T cd01245           1 KKGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKT---------------------------------------   41 (98)
T ss_pred             CCCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCC---------------------------------------
Confidence            3699999977558899999999973   4789998776431                                       


Q ss_pred             cccceeecccceeecCCCC-CCCcceEEEecCCe--eEEEEeCCHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQ-SDLRFCFRIISPTK--NYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~-~~rr~cF~I~t~~r--t~~lqA~se~e~~~Wi~ai~~  231 (638)
                      .+.+.|+|..+.|++..+. .+|+|||+|+++.+  +|+++|++ +|+++||++|+.
T Consensus        42 ~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          42 KPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             CccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            1223366777777763332 37889999999986  89999999 999999999974

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PHA02730 ankyrin-like protein; Provisional

Probab=99.66  E-value=3.8e-16  Score=174.08  Aligned_cols=112  Identities=14%  Similarity=0.069  Sum_probs=97.8

Q ss_pred             CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCC----HHHHHHHHHcCC--CCcccCCCCCcHHHH---HHHhC----
Q 006616          524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGA--NINATDSRGLTPLHR---CILRG----  590 (638)
Q Consensus       524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~ga--dvn~~d~~G~TpLh~---A~~~g----  590 (638)
                      ....++.+|+..||++|.. ..|.||||+|+..++    .+++++||.+|+  ++|.+|..|.||||.   |...+    
T Consensus       357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~  435 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYH  435 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcccccc
Confidence            3456778899999999985 789999999998875    899999999998  699999999999994   33332    


Q ss_pred             -----CHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          591 -----KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       591 -----~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                           ..+++++|+.+||+++.+|..|.||||+|+..++  .+++++|+++||
T Consensus       436 ~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~--~eive~LI~~GA  486 (672)
T PHA02730        436 CYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNN--IQFARRLLEYGA  486 (672)
T ss_pred             ccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCC--HHHHHHHHHCCC
Confidence                 2357999999999999999999999999999987  899999999997

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.65  E-value=1.3e-16  Score=149.56  Aligned_cols=97  Identities=25%  Similarity=0.344  Sum_probs=89.8

Q ss_pred             CcCCCCCCcHHHHHHHhCCH---HHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHh-CCCCCCCccCCCCC
Q 006616          540 TMDDLEGCTLLHLACDSADI---GMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREGKT  614 (638)
Q Consensus       540 ~~~d~~G~TpLh~Aa~~g~~---~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~-~gad~~~~d~~g~T  614 (638)
                      +..|.+|.||||+|+..|+.   +++++|++.|+++|.+|. .|+||||+|+..|+.+++++|+. .|++++.+|..|.|
T Consensus        49 ~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t  128 (154)
T PHA02736         49 LEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT  128 (154)
T ss_pred             HHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence            34688999999999999986   468899999999999984 89999999999999999999998 49999999999999


Q ss_pred             HHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          615 SLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       615 pL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |||+|+..|+  .+++++|+++||
T Consensus       129 pL~~A~~~~~--~~i~~~Ll~~ga  150 (154)
T PHA02736        129 PYYVACERHD--AKMMNILRAKGA  150 (154)
T ss_pred             HHHHHHHcCC--HHHHHHHHHcCC
Confidence            9999999998  899999999986

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.65  E-value=9.7e-17  Score=168.62  Aligned_cols=155  Identities=25%  Similarity=0.257  Sum_probs=132.3

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      -.++.|.+.+|...|..+| ..|+++|..+.++                       .+.++-+.......++.+|+..|+
T Consensus        42 a~~l~A~~~~d~~ev~~ll-~~ga~~~~~n~Dg-----------------------lTalhq~~id~~~e~v~~l~e~ga   97 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLL-NRGASPNLCNVDG-----------------------LTALHQACIDDNLEMVKFLVENGA   97 (527)
T ss_pred             HHHHhccccccHHHHHHHh-ccCCCccccCCcc-----------------------chhHHHHHhcccHHHHHHHHHhcC
Confidence            4577899999999997776 8889998887777                       223344444455567888999999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-----------------------------------------
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-----------------------------------------  576 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-----------------------------------------  576 (638)
                      +||..|..||||||.|+..|++.++++||.+||++-+.+                                         
T Consensus        98 ~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~m  177 (527)
T KOG0505|consen   98 NVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTM  177 (527)
T ss_pred             CccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHH
Confidence            999999999999999999999999999999998754332                                         


Q ss_pred             ------------------CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          577 ------------------SRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       577 ------------------~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                                        ..|.|+||.|+..|..++.++||++|.+++++|.+|+||||.|+..|.  .+++++|+++||
T Consensus       178 l~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~--~~~~elL~~~ga  255 (527)
T KOG0505|consen  178 LDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQ--EDACELLVEHGA  255 (527)
T ss_pred             HHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhh--HhHHHHHHHhhc
Confidence                              347889999999999999999999999999999999999999999998  789999999986

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.65  E-value=8.2e-16  Score=134.95  Aligned_cols=92  Identities=23%  Similarity=0.417  Sum_probs=66.1

Q ss_pred             EEEEEeecCC---CCCCceeeEEEEecCce------EEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616          102 QGYLSKRSSN---LRGDWKRRFFVLDSRGM------LYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV  172 (638)
Q Consensus       102 ~GyL~Kr~~~---~~~~WkrRwfvL~~~~~------l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  172 (638)
                      +|||.|+++.   ..++|+||||||.++++      |+||+++..                                   
T Consensus         2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~-----------------------------------   46 (108)
T cd01266           2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK-----------------------------------   46 (108)
T ss_pred             ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC-----------------------------------
Confidence            7999999653   24599999999997665      788876532                                   


Q ss_pred             CCccccccceeecccceeecC-----CCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          173 HDEKSAARHTVNLLTSTIKVD-----ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       173 ~~~~~~~~~~i~l~~~~v~~~-----~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                          ..+.+.|+|..|.+...     .......|+|.|.++.|+|+|+|+|++||++||.+|++.
T Consensus        47 ----~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          47 ----FKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             ----CccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence                12233455655443311     111123578999999999999999999999999999764

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.64  E-value=4.2e-16  Score=151.29  Aligned_cols=116  Identities=28%  Similarity=0.368  Sum_probs=102.8

Q ss_pred             ccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616          521 SSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT  600 (638)
Q Consensus       521 ~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~  600 (638)
                      ..+....+.+-|-....|.|..|+.|.+|||+||..|+..+|+.||.+|+.||..+....||||+|+..||.++|..||+
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~   88 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS   88 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHH
Confidence            33444444455666777899999999999999999999999999999999999999888999999999999999999999


Q ss_pred             CCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       601 ~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +.+|+|+.+..|.|||||||--|+  ..|.+=|+..||
T Consensus        89 ~kadvnavnehgntplhyacfwgy--dqiaedli~~ga  124 (448)
T KOG0195|consen   89 RKADVNAVNEHGNTPLHYACFWGY--DQIAEDLISCGA  124 (448)
T ss_pred             HhcccchhhccCCCchhhhhhhcH--HHHHHHHHhccc
Confidence            999999999999999999999997  678888888886

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.62  E-value=2.6e-15  Score=127.47  Aligned_cols=90  Identities=30%  Similarity=0.565  Sum_probs=70.6

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      ++|||+|+++ ..+.|++|||+|. ++.|+||+.+...                                     ...+.
T Consensus         1 ~~G~L~k~~~-~~~~W~~r~~vl~-~~~L~~~~~~~~~-------------------------------------~~~~~   41 (91)
T cd01246           1 VEGWLLKWTN-YLKGWQKRWFVLD-NGLLSYYKNKSSM-------------------------------------RGKPR   41 (91)
T ss_pred             CeEEEEEecc-cCCCceeeEEEEE-CCEEEEEecCccC-------------------------------------CCCce
Confidence            4899999965 4578999999998 7788888775431                                     01344


Q ss_pred             ceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      +.|.|..|++..+.   .++++|.|.+++ ++|+|+|+|++|+.+||.||+.|
T Consensus        42 ~~i~l~~~~~~~~~---~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          42 GTILLSGAVISEDD---SDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             EEEEeceEEEEECC---CCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            56778777776532   347999999998 99999999999999999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.62  E-value=2.9e-15  Score=129.82  Aligned_cols=95  Identities=21%  Similarity=0.400  Sum_probs=63.6

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecC-CCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ-CSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ++|+|||.|++ +..+.|++|||+|++++.|+||++. .....+                                   .
T Consensus         1 v~k~G~L~K~g-~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~-----------------------------------~   44 (102)
T cd01241           1 VVKEGWLHKRG-EYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPF-----------------------------------L   44 (102)
T ss_pred             CcEEEEEEeec-CCCCCCeeEEEEEeCCCeEEEEecCCCccCcc-----------------------------------c
Confidence            36999999995 4678999999999966766555543 221111                                   1


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEe------cCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRII------SPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~------t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      .+...+.+..|++... + ..++++|.|.      ++.|  +|+|+|++|+++||.||+.++
T Consensus        45 i~l~~~~v~~~~~~~~-~-~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v~  102 (102)
T cd01241          45 PPLNNFSVAECQLMKT-E-RPRPNTFIIRCLQWTTVIER--TFHVESPEEREEWIHAIQTVA  102 (102)
T ss_pred             cccCCeEEeeeeeeec-c-CCCcceEEEEeccCCcccCE--EEEeCCHHHHHHHHHHHHhhC
Confidence            1122344555666432 2 3467899997      2344  457999999999999998763

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.62  E-value=2.7e-15  Score=126.80  Aligned_cols=83  Identities=35%  Similarity=0.557  Sum_probs=78.2

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHH
Q 006616          550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEV  629 (638)
Q Consensus       550 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~ei  629 (638)
                      ||+||..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+  .++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGN--LEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTH--HHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCC--HHH
Confidence            7999999999999999999998887    8999999999999999999999999999999999999999999987  899


Q ss_pred             HHHHhhCCC
Q 006616          630 LAILSDSHG  638 (638)
Q Consensus       630 v~lLle~ga  638 (638)
                      +++|+++|+
T Consensus        75 ~~~Ll~~g~   83 (89)
T PF12796_consen   75 VKLLLEHGA   83 (89)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHcCC
Confidence            999999985

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.62  E-value=7.4e-16  Score=146.35  Aligned_cols=135  Identities=16%  Similarity=0.110  Sum_probs=110.2

Q ss_pred             cceecccccccchhh---hhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcc-ccccccc
Q 006616          458 HQIWEGVRTNDKKAV---YRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSS-SGSLNLA  533 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v---~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~-~~~~lL~  533 (638)
                      ..|+.|++.++...+   +++|.+.|+++|..+..+                     .+++++++....... ..+.+|+
T Consensus        22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g---------------------~t~Lh~Aa~~g~~~~~~~i~~Ll   80 (166)
T PHA02743         22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHG---------------------RQCTHMVAWYDRANAVMKIELLV   80 (166)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCC---------------------CcHHHHHHHhCccCHHHHHHHHH
Confidence            468889999998644   456778899998877666                     233344333322221 2356788


Q ss_pred             CCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCC
Q 006616          534 GTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQ-YGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE  611 (638)
Q Consensus       534 ~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~  611 (638)
                      ..|++++.+| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|+++|++++.++..
T Consensus        81 ~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743         81 NMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             HcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence            9999999998 589999999999999999999995 79999999999999999999999999999999999999999887


Q ss_pred             CC
Q 006616          612 GK  613 (638)
Q Consensus       612 g~  613 (638)
                      |.
T Consensus       161 ~~  162 (166)
T PHA02743        161 GL  162 (166)
T ss_pred             Cc
Confidence            75

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.62  E-value=1.7e-16  Score=148.83  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=104.1

Q ss_pred             cccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCc
Q 006616          462 EGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTM  541 (638)
Q Consensus       462 ~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~  541 (638)
                      +|+..|.++ |+++|+..||||.......                       ...+..+..++...++.+|+..+.|+|.
T Consensus       166 WAaa~G~i~-vV~fLL~~GAdp~~lgk~r-----------------------esALsLAt~ggytdiV~lLL~r~vdVNv  221 (296)
T KOG0502|consen  166 WAAAKGHIP-VVQFLLNSGADPDALGKYR-----------------------ESALSLATRGGYTDIVELLLTREVDVNV  221 (296)
T ss_pred             HHHhcCchH-HHHHHHHcCCChhhhhhhh-----------------------hhhHhHHhcCChHHHHHHHHhcCCCcce
Confidence            455556554 5577778899887643222                       2345556777788888889999999999


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       542 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      .|.+|-|||-||++.++.++|+.||..||+++..+..|.+++..|+..|.. +|+..|+.-+..+.+|..-.||+|
T Consensus       222 yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  222 YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             eccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999999999999999999999999999999999998887 888888877887788877777764

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=2e-15  Score=122.74  Aligned_cols=103  Identities=33%  Similarity=0.515  Sum_probs=91.8

Q ss_pred             ceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCC
Q 006616          459 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG  538 (638)
Q Consensus       459 ~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~  538 (638)
                      .+.+++++|+..+|.+.. ..|.|||...                                                   
T Consensus         5 ~~~W~vkNG~~DeVk~~v-~~g~nVn~~~---------------------------------------------------   32 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSV-NEGLNVNEIY---------------------------------------------------   32 (117)
T ss_pred             hHhhhhccCcHHHHHHHH-HccccHHHHh---------------------------------------------------
Confidence            467889999999998887 4567887543                                                   


Q ss_pred             CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHH
Q 006616          539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLEL  618 (638)
Q Consensus       539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~  618 (638)
                            .|++|||||+-.|.++++++|+..||+++.+|..|-|||..|+..||.+||++||+.||+-..+..+|.+.+..
T Consensus        33 ------ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   33 ------GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             ------CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence                  38999999999999999999999999999999999999999999999999999999999999988888776654


Q ss_pred             H
Q 006616          619 A  619 (638)
Q Consensus       619 A  619 (638)
                      +
T Consensus       107 t  107 (117)
T KOG4214|consen  107 T  107 (117)
T ss_pred             c
Confidence            3

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.60  E-value=2e-15  Score=164.87  Aligned_cols=179  Identities=20%  Similarity=0.214  Sum_probs=136.6

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHH------HHhhhh-----cc----ccCCCcccccccc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAK------AMLLNE-----QT----SLERSSSSLTGNS  521 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~------~ll~~~-----~~----~~~~~~~~l~~~~  521 (638)
                      .+.|+.|+..+..+ +.++|+..|+||-..+..+.++.|-....      .+...+     +.    -..+...+++.+.
T Consensus       155 ~TpLh~A~~~~~~E-~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv  233 (929)
T KOG0510|consen  155 FTPLHLAARKNKVE-AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV  233 (929)
T ss_pred             CchhhHHHhcChHH-HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhh
Confidence            35788888777777 77888899999987777665542221111      001111     00    0113344556666


Q ss_pred             cCCcccccccccCCCCC---------------CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 006616          522 SDRSSSGSLNLAGTSEG---------------QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRC  586 (638)
Q Consensus       522 ~~~~~~~~~lL~~~~~~---------------~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A  586 (638)
                      .++.......+++.|..               +|..|.+|.||||+||..|+++.++.|+..|++++.++.++.||||.|
T Consensus       234 e~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~A  313 (929)
T KOG0510|consen  234 EGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFA  313 (929)
T ss_pred             hcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHH
Confidence            66666666666665542               345688999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHh-CC-CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          587 ILRGKAMFAKLLLT-RG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       587 ~~~g~~~~v~lLl~-~g-ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +.+|+..+|+-||+ .| ...|..|..|.||||+|+..||  ..++++|++.||
T Consensus       314 A~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH--~~v~qlLl~~GA  365 (929)
T KOG0510|consen  314 AIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGH--DRVVQLLLNKGA  365 (929)
T ss_pred             HHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCH--HHHHHHHHhcCh
Confidence            99999999999998 44 5678899999999999999999  789999999997

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.59  E-value=5.6e-15  Score=125.99  Aligned_cols=88  Identities=19%  Similarity=0.225  Sum_probs=62.6

Q ss_pred             EEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          103 GYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       103 GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      |.|.||+..   ..++||+|||+|. +..|+||+.+...+.|+                                     
T Consensus         5 ~~~~kr~~~~~~~~~n~KkRwF~Lt-~~~L~Y~k~~~~~~~g~-------------------------------------   46 (98)
T cd01244           5 LQQVDRSRLAWKKVLHFKKRYFQLT-TTHLSWAKDVQCKKSAL-------------------------------------   46 (98)
T ss_pred             cEEEEcccCCCccCcCCceeEEEEC-CCEEEEECCCCCceeee-------------------------------------
Confidence            455566533   2368999999998 67788887765555543                                     


Q ss_pred             cceeecc--cceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHH
Q 006616          180 RHTVNLL--TSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       180 ~~~i~l~--~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                         |+|.  .+...+.....++.|+|+|++|+++|+|||+|++|+++||.||+.
T Consensus        47 ---I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k   97 (98)
T cd01244          47 ---IKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEK   97 (98)
T ss_pred             ---EEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence               3332  122222222334569999999999999999999999999999975

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.58  E-value=1.5e-14  Score=125.14  Aligned_cols=99  Identities=20%  Similarity=0.329  Sum_probs=75.3

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .+|+|||.|.+.. .+.|+.|||+|.++ .|.|++....  .+                                .....
T Consensus         2 ~ikeG~L~K~~~~-~~~~k~RyffLFnd-~Ll~~~~~~~--~~--------------------------------~~~y~   45 (101)
T cd01219           2 LLKEGSVLKISST-TEKTEERYLFLFND-LLLYCVPRKM--IG--------------------------------GSKFK   45 (101)
T ss_pred             cccceEEEEEecC-CCCceeEEEEEeCC-EEEEEEcccc--cC--------------------------------CCcEE
Confidence            3689999999654 56899999999977 5444443211  00                                12234


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ..+.|+|..+.|.. .++.+.+++|.|.+++++|+|+|+|++|+++||.+|+.+|.
T Consensus        46 ~~~~i~l~~~~v~~-~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          46 VRARIDVSGMQVCE-GDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             EEEEEecccEEEEe-CCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence            55668888888874 34456789999999999999999999999999999999985

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PHA02741 hypothetical protein; Provisional

Probab=99.58  E-value=9.8e-15  Score=139.13  Aligned_cols=98  Identities=24%  Similarity=0.251  Sum_probs=87.9

Q ss_pred             CCcCCCCCCcHHHHHHHhCCHHHHHHHHH------cCCCCcccCCCCCcHHHHHHHhCC----HHHHHHHHhCCCCCCCc
Q 006616          539 QTMDDLEGCTLLHLACDSADIGMLELLLQ------YGANINATDSRGLTPLHRCILRGK----AMFAKLLLTRGADPRAV  608 (638)
Q Consensus       539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~------~gadvn~~d~~G~TpLh~A~~~g~----~~~v~lLl~~gad~~~~  608 (638)
                      ++..|..|.||||+|+..|+.+++++|+.      .|++++.+|..|+||||+|+..|+    .+++++|+++|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            34567789999999999999999999854      368999999999999999999998    58999999999999999


Q ss_pred             cC-CCCCHHHHHHHcCCCcHHHHHHHhhC-CC
Q 006616          609 NR-EGKTSLELAVESNFADSEVLAILSDS-HG  638 (638)
Q Consensus       609 d~-~g~TpL~~A~~~g~~d~eiv~lLle~-ga  638 (638)
                      +. .|.||||+|+..++  .+++++|++. |+
T Consensus        94 ~~~~g~TpLh~A~~~~~--~~iv~~Ll~~~g~  123 (169)
T PHA02741         94 EMLEGDTALHLAAHRRD--HDLAEWLCCQPGI  123 (169)
T ss_pred             CcCCCCCHHHHHHHcCC--HHHHHHHHhCCCC
Confidence            85 99999999999998  8999999973 53

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.57  E-value=5.7e-15  Score=170.86  Aligned_cols=178  Identities=22%  Similarity=0.290  Sum_probs=134.3

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHH--------HHhhhhcc---ccCCCcccccccccCCcc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAK--------AMLLNEQT---SLERSSSSLTGNSSDRSS  526 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~--------~ll~~~~~---~~~~~~~~l~~~~~~~~~  526 (638)
                      ..||-|...++.. +++++++.|+++|..+..+.+..++...+        .++....+   ......+.++.+...+..
T Consensus       409 Tplh~aa~~~~~~-~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~  487 (1143)
T KOG4177|consen  409 TPLHVAAHYGNPR-VVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHT  487 (1143)
T ss_pred             ceeeehhhccCcc-eEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCc
Confidence            3455555444433 44555677777777666664433332222        11111111   112334455556666666


Q ss_pred             cccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          527 SGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      ..+.+|+..++..+.....|-|+||.|...+...+++.++++|++++.++..|.||||.|+.+|+..+|++||++|||++
T Consensus       488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~  567 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN  567 (1143)
T ss_pred             hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc
Confidence            67777788788888888888888888888888899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          607 AVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       607 ~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .++..|+||||.|+..|+  .+|+.+|+++||
T Consensus       568 ak~~~G~TPLH~Aa~~G~--~~i~~LLlk~GA  597 (1143)
T KOG4177|consen  568 AKDKLGYTPLHQAAQQGH--NDIAELLLKHGA  597 (1143)
T ss_pred             ccCCCCCChhhHHHHcCh--HHHHHHHHHcCC
Confidence            999999999999999998  889999999997

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.57  E-value=3.3e-14  Score=122.90  Aligned_cols=97  Identities=33%  Similarity=0.659  Sum_probs=76.3

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .+++|||.|++ ...+.|++|||||. ++.|+||+.....                                    ....
T Consensus         1 ~~~~G~L~~~~-~~~~~wk~r~~vL~-~~~L~~~~~~~~~------------------------------------~~~~   42 (104)
T PF00169_consen    1 CIKEGWLLKKS-SSRKKWKKRYFVLR-DSYLLYYKSSKDK------------------------------------SDSK   42 (104)
T ss_dssp             EEEEEEEEEEE-SSSSSEEEEEEEEE-TTEEEEESSTTTT------------------------------------TESS
T ss_pred             CEEEEEEEEEC-CCCCCeEEEEEEEE-CCEEEEEecCccc------------------------------------ccee
Confidence            36899999996 45678999999998 5667777765320                                    1223


Q ss_pred             ccceeecccceeecCCCC-----CCCcceEEEecCCe-eEEEEeCCHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQ-----SDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~-----~~rr~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +...|+|..+.|....+.     .+.++||.|.++.+ +|+|+|+|++++.+||.+|+.++
T Consensus        43 ~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   43 PKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             ESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            445688888887764443     36789999999996 99999999999999999999886

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.57  E-value=1.9e-15  Score=146.79  Aligned_cols=139  Identities=24%  Similarity=0.250  Sum_probs=121.9

Q ss_pred             eecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCC
Q 006616          460 IWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQ  539 (638)
Q Consensus       460 L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~  539 (638)
                      +|.-++.|+.-.|.-.|-+..-|.|.-|..+                       ..+++.++..+...++..|+..|+.+
T Consensus         4 if~wcregna~qvrlwld~tehdln~gddhg-----------------------fsplhwaakegh~aivemll~rgarv   60 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDHG-----------------------FSPLHWAAKEGHVAIVEMLLSRGARV   60 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccccccC-----------------------cchhhhhhhcccHHHHHHHHhccccc
Confidence            5666778888877777767777888776655                       34556666677777888899999999


Q ss_pred             CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHH
Q 006616          540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA  619 (638)
Q Consensus       540 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A  619 (638)
                      |..+....||||+|+.+|+.++|..||++.+|||+.+..|.|||||||.-|...+++-|+..||.+++.+.+|.|||..|
T Consensus        61 n~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   61 NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             ccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HH
Q 006616          620 VE  621 (638)
Q Consensus       620 ~~  621 (638)
                      .-
T Consensus       141 kp  142 (448)
T KOG0195|consen  141 KP  142 (448)
T ss_pred             ch
Confidence            43

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.56  E-value=3.2e-15  Score=149.78  Aligned_cols=127  Identities=25%  Similarity=0.270  Sum_probs=102.6

Q ss_pred             hhccccCCCcccccccccCCcccccccccCCC-CCCCcCCCCCCcHHHHHHHh-----CCHHHHHHHHHcCCCCcccCC-
Q 006616          505 NEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS-EGQTMDDLEGCTLLHLACDS-----ADIGMLELLLQYGANINATDS-  577 (638)
Q Consensus       505 ~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~-~~~~~~d~~G~TpLh~Aa~~-----g~~~~v~~Ll~~gadvn~~d~-  577 (638)
                      +-.+.++.+.+++.  ..+.+..++..|++.| ++++..+.-|.||+++|+..     .+..+|+.|+.. +|||++-. 
T Consensus       262 NlaDsNGNTALHYs--VSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ  338 (452)
T KOG0514|consen  262 NLADSNGNTALHYA--VSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQ  338 (452)
T ss_pred             hhhcCCCCeeeeee--ecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhh
Confidence            33444555555544  4445555666666555 68999999999999998864     346788888764 57887665 


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          578 RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      .|.|+|++|+..|+.++|+.||..|||||++|.+|.|+|+.|+++||  .|||++||..
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGh--kEivklLLA~  395 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGH--KEIVKLLLAV  395 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhCh--HHHHHHHhcc
Confidence            69999999999999999999999999999999999999999999999  9999999864

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=3.2e-14  Score=137.39  Aligned_cols=95  Identities=27%  Similarity=0.575  Sum_probs=73.2

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecC-CCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ-CSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      .+.++|||+|.+++..++||||||+|. +..|||+... ++.|.|.                                  
T Consensus       259 npdREGWLlKlgg~rvktWKrRWFiLt-dNCLYYFe~tTDKEPrGI----------------------------------  303 (395)
T KOG0930|consen  259 NPDREGWLLKLGGNRVKTWKRRWFILT-DNCLYYFEYTTDKEPRGI----------------------------------  303 (395)
T ss_pred             CccccceeeeecCCcccchhheeEEee-cceeeeeeeccCCCCCcc----------------------------------
Confidence            467899999998877889999999998 5566776554 3344443                                  


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCC----------------------eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT----------------------KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~----------------------rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                            |.|.+-+|+. -+++.++|||+|..|+                      .+|.++|.+.+|+++||++|+.+|.
T Consensus       304 ------IpLeNlsir~-VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  304 ------IPLENLSIRE-VEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             ------eeccccceee-ccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence                  4454445553 4567889999998753                      1489999999999999999998885

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.52  E-value=1.4e-14  Score=169.64  Aligned_cols=166  Identities=22%  Similarity=0.230  Sum_probs=118.3

Q ss_pred             ccceecccccccchhhhhhhccc--ccCccccccchhccch--------hhHHHHHhhhhc-cccCCCcccccccccCCc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNF--EVDVNAVYEQVSCISS--------LTLAKAMLLNEQ-TSLERSSSSLTGNSSDRS  525 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~--gaDvN~~~~~~~~~~~--------~~l~~~ll~~~~-~~~~~~~~~l~~~~~~~~  525 (638)
                      .++++.|++.||...|.++| +.  ++|+|..|..+..+.+        ..+++.|+..+. +..+.++++.++......
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL-~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~   96 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDL-EEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDA   96 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHh-ccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHH
Confidence            46788889999988887766 55  7888887776644444        244444544332 334444444333211111


Q ss_pred             -ccccccccCCCCC------C----CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC--------------CCCC
Q 006616          526 -SSGSLNLAGTSEG------Q----TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD--------------SRGL  580 (638)
Q Consensus       526 -~~~~~lL~~~~~~------~----~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d--------------~~G~  580 (638)
                       .....++...+.+      +    ...+..|.||||+||..|+.++|++||++||++|.++              ..|.
T Consensus        97 v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~  176 (743)
T TIGR00870        97 VEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGE  176 (743)
T ss_pred             HHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccc
Confidence             1122223332211      1    1123469999999999999999999999999999753              2589


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcC
Q 006616          581 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN  623 (638)
Q Consensus       581 TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g  623 (638)
                      ||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus       177 tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       177 SPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999886

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.52  E-value=2.2e-14  Score=158.59  Aligned_cols=118  Identities=19%  Similarity=0.192  Sum_probs=99.6

Q ss_pred             ccCCcccccccccCCCCCCCcCCCCC--CcHHHHHHHhCCH---HHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHH
Q 006616          521 SSDRSSSGSLNLAGTSEGQTMDDLEG--CTLLHLACDSADI---GMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA  595 (638)
Q Consensus       521 ~~~~~~~~~~lL~~~~~~~~~~d~~G--~TpLh~Aa~~g~~---~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v  595 (638)
                      +..+....+.+|+..|++++..|..|  .||||+|+.....   +++++|+.+|||+|.+|..|+||||+|+..++.+++
T Consensus       347 a~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eiv  426 (631)
T PHA02792        347 FDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLV  426 (631)
T ss_pred             HHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHH
Confidence            44556677888999999999998875  6999998776654   468999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCccCCCCCHHHHHHHcCC-Cc-------HHHHHHHhhCCC
Q 006616          596 KLLLTRGADPRAVNREGKTSLELAVESNF-AD-------SEVLAILSDSHG  638 (638)
Q Consensus       596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~-~d-------~eiv~lLle~ga  638 (638)
                      ++|+++|++++.+|..|.|||++|+...+ .+       .+++++|+.+|.
T Consensus       427 elLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p  477 (631)
T PHA02792        427 EWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP  477 (631)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999976211 11       356888887763

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.52  E-value=1e-14  Score=132.14  Aligned_cols=145  Identities=24%  Similarity=0.223  Sum_probs=123.2

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      .+-+++|+..+.+..|.++|.+..-.||.+|.++                       .++|+-++.++...++..|+..|
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~-----------------------YTpLHRAaYn~h~div~~ll~~g  120 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDE-----------------------YTPLHRAAYNGHLDIVHELLLSG  120 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcccccccccccc-----------------------ccHHHHHHhcCchHHHHHHHHcc
Confidence            3556789999999999999876666788888777                       44556666777777888888999


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC-HHHHHHHHh-CCCCCCCccCCCCC
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKLLLT-RGADPRAVNREGKT  614 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-~~~v~lLl~-~gad~~~~d~~g~T  614 (638)
                      ++++.+-..||||||-||.-.+.+++.+||++|+|||++....+||||+|+...+ ...+.+|+. .+.++..++..+.|
T Consensus       121 An~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eet  200 (228)
T KOG0512|consen  121 ANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEET  200 (228)
T ss_pred             CCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccch
Confidence            9999999999999999999999999999999999999999999999999997654 445666554 58999999999999


Q ss_pred             HHHHHHHcCC
Q 006616          615 SLELAVESNF  624 (638)
Q Consensus       615 pL~~A~~~g~  624 (638)
                      |+.+|.+.+-
T Consensus       201 a~~iARRT~~  210 (228)
T KOG0512|consen  201 AFDIARRTSM  210 (228)
T ss_pred             HHHHHHHhhh
Confidence            9999988753

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.51  E-value=8.5e-14  Score=143.08  Aligned_cols=95  Identities=22%  Similarity=0.164  Sum_probs=84.9

Q ss_pred             CCCCCCcH-HHHHHHhCCHHHHHHHHHcCCCCcccC----CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc-cCCCCCH
Q 006616          542 DDLEGCTL-LHLACDSADIGMLELLLQYGANINATD----SRGLTPLHRCILRGKAMFAKLLLTRGADPRAV-NREGKTS  615 (638)
Q Consensus       542 ~d~~G~Tp-Lh~Aa~~g~~~~v~~Ll~~gadvn~~d----~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~-d~~g~Tp  615 (638)
                      +|..|+|+ ||.|+..|+.+++++|+++||++|.++    ..|.||||+|+..++.+++++|+++||+++.+ +..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            46667665 556667789999999999999999974    58999999999999999999999999999996 4689999


Q ss_pred             HHHHHHcCCCcHHHHHHHhhCCC
Q 006616          616 LELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||+|+..++  .+++++|+++||
T Consensus       108 Lh~Aa~~~~--~eivklLL~~GA  128 (300)
T PHA02884        108 LYISVLHGC--LKCLEILLSYGA  128 (300)
T ss_pred             HHHHHHcCC--HHHHHHHHHCCC
Confidence            999999998  899999999986

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.51  E-value=1.1e-13  Score=114.52  Aligned_cols=87  Identities=29%  Similarity=0.512  Sum_probs=71.6

Q ss_pred             EEEEeecCCCCCCceeeEEEEe-cCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccccc
Q 006616          103 GYLSKRSSNLRGDWKRRFFVLD-SRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARH  181 (638)
Q Consensus       103 GyL~Kr~~~~~~~WkrRwfvL~-~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  181 (638)
                      |||.|+.....++|+||||+|+ .+|.|.||.++.+                                       ...++
T Consensus         1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~---------------------------------------~~~rG   41 (89)
T PF15409_consen    1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNS---------------------------------------GKLRG   41 (89)
T ss_pred             CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCC---------------------------------------CeeEe
Confidence            8999997777889999999994 4899999987643                                       13455


Q ss_pred             eeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          182 TVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       182 ~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      .|++..+.|.+..    +..+|+|.+...+|+|.|.|++|.+.||.||+.+
T Consensus        42 si~v~~a~is~~~----~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   42 SIDVSLAVISANK----KSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             EEEccceEEEecC----CCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence            6788888777532    2458999999999999999999999999999864

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.51  E-value=1.8e-13  Score=117.22  Aligned_cols=97  Identities=24%  Similarity=0.320  Sum_probs=72.2

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      -+|||+|.|.++.  +.|. |||+|-+|-+||+......                                    .....
T Consensus         2 ~ikEG~L~K~~~k--~~~~-R~~FLFnD~LlY~~~~~~~------------------------------------~~~y~   42 (99)
T cd01220           2 FIRQGCLLKLSKK--GLQQ-RMFFLFSDLLLYTSKSPTD------------------------------------QNSFR   42 (99)
T ss_pred             eeeEEEEEEEeCC--CCce-EEEEEccceEEEEEeecCC------------------------------------CceEE
Confidence            3799999999653  3455 6666667877777554321                                    01223


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ..+.++|..+.|+-..++.+.+|||+|.+++++|+|+|.|++|+++||++|+.+|.
T Consensus        43 ~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          43 ILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             EEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence            45668888888875434345689999999999999999999999999999999985

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.51  E-value=2.7e-14  Score=120.67  Aligned_cols=83  Identities=33%  Similarity=0.438  Sum_probs=71.4

Q ss_pred             CCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q 006616          523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG  602 (638)
Q Consensus       523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g  602 (638)
                      .+....+..|+..+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus         7 ~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   82 (89)
T PF12796_consen    7 NGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHG   82 (89)
T ss_dssp             TTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3444455566667777766    899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcc
Q 006616          603 ADPRAVN  609 (638)
Q Consensus       603 ad~~~~d  609 (638)
                      ++++.+|
T Consensus        83 ~~~~~~n   89 (89)
T PF12796_consen   83 ADVNIRN   89 (89)
T ss_dssp             T-TTSS-
T ss_pred             CCCCCcC
Confidence            9999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.50  E-value=1.6e-13  Score=120.96  Aligned_cols=112  Identities=28%  Similarity=0.480  Sum_probs=54.5

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      |+|||+|++....+.|++|||+|.++++|.||+.+.....+.+........   ...|-   +..           ....
T Consensus         1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~---~~~~~---~~~-----------~~~~   63 (112)
T PF15413_consen    1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRV---IRKGD---WSI-----------SRRS   63 (112)
T ss_dssp             EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-S---B-SEE---EE--------------GG
T ss_pred             CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhce---Eeecc---cCc-----------cccc
Confidence            689999996655789999999998788999998843322111111000000   00000   000           0000


Q ss_pred             ceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      ..+...... ++  ....-...|.|.||+|+|+|.|++.+|+.+||+||+.+
T Consensus        64 ~~~~~~~~~-~~--~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   64 SRIQGIKDK-NP--FGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             GT-EEEES--T----SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             ccccccccC-Cc--ccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence            000000000 11  11112467999999999999999999999999999874

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.49  E-value=7.1e-14  Score=164.85  Aligned_cols=118  Identities=19%  Similarity=0.133  Sum_probs=105.9

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      +..++..+....+..|+..|+++|..|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++++
T Consensus       529 L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~  608 (823)
T PLN03192        529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFR  608 (823)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence            34444456667777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|++.++..+.  ..|.+|||.|+..|+  .+++++|+++|+
T Consensus       609 ~L~~~~~~~~~--~~~~~~L~~Aa~~g~--~~~v~~Ll~~Ga  646 (823)
T PLN03192        609 ILYHFASISDP--HAAGDLLCTAAKRND--LTAMKELLKQGL  646 (823)
T ss_pred             HHHhcCcccCc--ccCchHHHHHHHhCC--HHHHHHHHHCCC
Confidence            99998877653  457799999999998  899999999986

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.48  E-value=2.5e-14  Score=155.35  Aligned_cols=166  Identities=21%  Similarity=0.201  Sum_probs=133.9

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      +.|..|++.+|...+.++|...+.---......         +..-.+.++.  ...+.++-+..++...+..+|++..+
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~t---------rsds~n~qd~--~gfTalhha~Lng~~~is~llle~ea   73 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTT---------RSDSHNLQDY--SGFTLLHHAVLNGQNQISKLLLDYEA   73 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCC---------CCccccccCc--cchhHHHHHHhcCchHHHHHHhcchh
Confidence            578899999999999888865443100000000         0000111122  22445566667777778888999999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      -++..|..|.+|||+|++.|+.++|++||..+..+|+++..|.||||.|++.||.+++.+||++|+|+-++|..+.|+|+
T Consensus        74 ~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ld  153 (854)
T KOG0507|consen   74 LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLD  153 (854)
T ss_pred             hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHhhC
Q 006616          618 LAVESNFADSEVLAILSDS  636 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle~  636 (638)
                      +|++.|.  .++|.+|+..
T Consensus       154 lA~qfgr--~~Vvq~ll~~  170 (854)
T KOG0507|consen  154 LASRFGR--AEVVQMLLQK  170 (854)
T ss_pred             HHHHhhh--hHHHHHHhhh
Confidence            9999998  8999999864

>PHA02792 ankyrin-like protein; Provisional

Probab=99.46  E-value=1.2e-13  Score=152.69  Aligned_cols=117  Identities=17%  Similarity=0.073  Sum_probs=104.0

Q ss_pred             ccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHH-hCCHHHHHHHHHcCCCCc------------------------
Q 006616          519 GNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACD-SADIGMLELLLQYGANIN------------------------  573 (638)
Q Consensus       519 ~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~-~g~~~~v~~Ll~~gadvn------------------------  573 (638)
                      .++.++..+.+.+|+..||++|..+..|.||||+|+. .++++++++||++|||++                        
T Consensus        78 ~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~  157 (631)
T PHA02792         78 LCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDD  157 (631)
T ss_pred             HHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhh
Confidence            4456677788889999999999999999999999976 699999999999998743                        


Q ss_pred             ------------ccCCCCCcHHHHHHHhC-------CHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHh
Q 006616          574 ------------ATDSRGLTPLHRCILRG-------KAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS  634 (638)
Q Consensus       574 ------------~~d~~G~TpLh~A~~~g-------~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLl  634 (638)
                                  ..|..|.||||+|+..+       +.+++++|+.+|++++.+|..|.||||+|+...+-+.||+++|+
T Consensus       158 ~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~  237 (631)
T PHA02792        158 ELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALF  237 (631)
T ss_pred             hccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHH
Confidence                        34456999999999999       89999999999999999999999999999999865789999998


Q ss_pred             h
Q 006616          635 D  635 (638)
Q Consensus       635 e  635 (638)
                      +
T Consensus       238 ~  238 (631)
T PHA02792        238 D  238 (631)
T ss_pred             h
Confidence            6

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.42  E-value=2.5e-13  Score=127.32  Aligned_cols=97  Identities=18%  Similarity=0.168  Sum_probs=80.8

Q ss_pred             CCCcccccccccCCcc-cccccccCCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHH
Q 006616          511 ERSSSSLTGNSSDRSS-SGSLNLAGTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQ-YGANINATDSRGLTPLHRCI  587 (638)
Q Consensus       511 ~~~~~~l~~~~~~~~~-~~~~lL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadvn~~d~~G~TpLh~A~  587 (638)
                      +.+++++++....... ..+.+|+..|++++..| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+
T Consensus        55 g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~  134 (154)
T PHA02736         55 GKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC  134 (154)
T ss_pred             CCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH
Confidence            3455555443322211 34567889999999998 489999999999999999999998 49999999999999999999


Q ss_pred             HhCCHHHHHHHHhCCCCCCC
Q 006616          588 LRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       588 ~~g~~~~v~lLl~~gad~~~  607 (638)
                      ..|+.+++++|+++|+++++
T Consensus       135 ~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736        135 ERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             HcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999998763

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.42  E-value=2e-13  Score=143.88  Aligned_cols=199  Identities=20%  Similarity=0.242  Sum_probs=135.3

Q ss_pred             CCCCHHHHHHHHHHHHhhhh-hccCCCCcc-cccccccceecccccccchhhhhhhcccccCccccccch-------hcc
Q 006616          423 HSDSISVKEKFIHAKYAEKL-FVRKPKDNQ-YLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCI  493 (638)
Q Consensus       423 ~~~~~~~re~fI~~KY~~k~-fv~~~~~~~-~~~~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~-------~~~  493 (638)
                      ..++...+++--+.-|.+.. |+.....++ ...+-...|+.++-..+ ..|+++|++.|++||..+..+       ++.
T Consensus        38 f~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~-~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   38 FEDSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDN-LEMVKFLVENGANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             CCchHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhccc-HHHHHHHHHhcCCccccccccCCcchhhccc
Confidence            33444445555555554322 233222222 22333466776665544 556778889999999988777       344


Q ss_pred             chhhHHHHHhhhhccc------------cCCCccccc-----ccccCCccc------------ccccccCCCCCCCcCCC
Q 006616          494 SSLTLAKAMLLNEQTS------------LERSSSSLT-----GNSSDRSSS------------GSLNLAGTSEGQTMDDL  544 (638)
Q Consensus       494 ~~~~l~~~ll~~~~~~------------~~~~~~~l~-----~~~~~~~~~------------~~~lL~~~~~~~~~~d~  544 (638)
                      +++.++.+++..+...            .......+.     ....+....            .+.-.+..|...++.+.
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA  196 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence            5566777665533221            011111111     011111110            11123447888888888


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHc
Q 006616          545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES  622 (638)
Q Consensus       545 ~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~  622 (638)
                      .|.|+||.|+..|..++.++||+.|.+++.+|.+||||||.|+.-|+.+++++|+++|++.+.....|.|||.+|..-
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998553

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.41  E-value=8.1e-13  Score=116.85  Aligned_cols=94  Identities=18%  Similarity=0.357  Sum_probs=68.5

Q ss_pred             EEEEEEe-ecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          101 RQGYLSK-RSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       101 k~GyL~K-r~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      -.|||.. +..+..++|+||||+|. ++.|+|++.+.+.                                    ....+
T Consensus         3 ~~GfL~~~q~~~~~k~W~RRWFvL~-g~~L~y~k~p~d~------------------------------------~~~~P   45 (122)
T cd01263           3 YHGFLTMFEDTSGFGAWHRRWCALE-GGEIKYWKYPDDE------------------------------------KRKGP   45 (122)
T ss_pred             cceeEEEEeccCCCCCceEEEEEEe-CCEEEEEcCCCcc------------------------------------ccCCc
Confidence            3799985 54456789999999998 8889998876541                                    11234


Q ss_pred             cceeecccceeecC----CCCCCCcceEEEecC--C-----------------ee-EEEEeCCHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIKVD----ADQSDLRFCFRIISP--T-----------------KN-YTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       180 ~~~i~l~~~~v~~~----~~~~~rr~cF~I~t~--~-----------------rt-~~lqA~se~e~~~Wi~ai~~  231 (638)
                      .+.|+|..|.+...    .+...|+++|.|...  .                 ++ +.|.|+|.+|+++||.||++
T Consensus        46 lg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~  121 (122)
T cd01263          46 TGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS  121 (122)
T ss_pred             eEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence            55688877776542    134567899998542  1                 33 56899999999999999985

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.41  E-value=4.8e-13  Score=156.66  Aligned_cols=173  Identities=14%  Similarity=0.111  Sum_probs=126.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchh----------hHHHHHhhhhcc-------------ccCCCc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL----------TLAKAMLLNEQT-------------SLERSS  514 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~----------~l~~~ll~~~~~-------------~~~~~~  514 (638)
                      ..|+.++..++..+++++|++.|+.    +..|....+.          .+...+......             ......
T Consensus        54 t~Lh~~A~~~~~~eiv~lLl~~g~~----~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~  129 (743)
T TIGR00870        54 SALFVAAIENENLELTELLLNLSCR----GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI  129 (743)
T ss_pred             hHHHHHHHhcChHHHHHHHHhCCCC----CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCC
Confidence            4566577778888888999898871    1222111111          111111111100             011234


Q ss_pred             ccccccccCCcccccccccCCCCCCCcCC--------------CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCC
Q 006616          515 SSLTGNSSDRSSSGSLNLAGTSEGQTMDD--------------LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGL  580 (638)
Q Consensus       515 ~~l~~~~~~~~~~~~~lL~~~~~~~~~~d--------------~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~  580 (638)
                      ++++.|...+...++.+|+..|++++..+              ..|.||||+|+..|+.+++++|+++|+|+|.+|..|+
T Consensus       130 TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~  209 (743)
T TIGR00870       130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGN  209 (743)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhh
Confidence            55666666777888899999999998653              2599999999999999999999999999999999999


Q ss_pred             cHHHHHHHhC---------CHHHHHHHHhCCCCC-------CCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          581 TPLHRCILRG---------KAMFAKLLLTRGADP-------RAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       581 TpLh~A~~~g---------~~~~v~lLl~~gad~-------~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      ||||+|+..+         ...+.++++..+++.       ++.|.+|.||||+|+..|+  .+++++|++.
T Consensus       210 T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~--~~l~~lLL~~  279 (743)
T TIGR00870       210 TLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGR--IVLFRLKLAI  279 (743)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCC--ccHHHHHHHH
Confidence            9999999986         234666777665554       6779999999999999998  7899999983

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.38  E-value=4e-13  Score=103.07  Aligned_cols=55  Identities=45%  Similarity=0.715  Sum_probs=24.1

Q ss_pred             HHHcC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHH
Q 006616          565 LLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA  619 (638)
Q Consensus       565 Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A  619 (638)
                      ||++| +++|.+|..|.||||+|+..|+.++|++|++.|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45566 66777777777777777777777777777766777777777777777665

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.38  E-value=9.9e-13  Score=117.55  Aligned_cols=36  Identities=19%  Similarity=0.458  Sum_probs=33.1

Q ss_pred             CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          197 SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       197 ~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      ..+++.|.|.+++|+|.|.|+|+.++++||++|+.+
T Consensus        86 ~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254          86 TGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             CCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            466899999999999999999999999999999853

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.37  E-value=1.4e-12  Score=128.41  Aligned_cols=116  Identities=34%  Similarity=0.422  Sum_probs=104.0

Q ss_pred             cccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCC-----HHHHHHHHHcCC---CCcccCCCCCcHHHHHHHhCC
Q 006616          520 NSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD-----IGMLELLLQYGA---NINATDSRGLTPLHRCILRGK  591 (638)
Q Consensus       520 ~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~-----~~~v~~Ll~~ga---dvn~~d~~G~TpLh~A~~~g~  591 (638)
                      +...........++..+++++..|.+|.||||+|+..++     .+++++||+.|+   +.+.+|..|+||||+|+..|+
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~  159 (235)
T COG0666          80 AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGD  159 (235)
T ss_pred             HHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCc
Confidence            333344445567889999999999999999999999999     999999999999   566669999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616          592 AMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       592 ~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~g  637 (638)
                      .+++++|++.|++++.++..|.|++++|+..++  .++++.|++.+
T Consensus       160 ~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~l~~~~  203 (235)
T COG0666         160 ADIVELLLEAGADPNSRNSYGVTALDPAAKNGR--IELVKLLLDKG  203 (235)
T ss_pred             hHHHHHHHhcCCCCcccccCCCcchhhhcccch--HHHHHHHHhcC
Confidence            999999999999999999999999999999998  88999988753

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.37  E-value=1.5e-12  Score=106.14  Aligned_cols=88  Identities=22%  Similarity=0.282  Sum_probs=82.8

Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcH
Q 006616          548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS  627 (638)
Q Consensus       548 TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~  627 (638)
                      --+.|++.+|.++-|+..+..|.+||..- .|++|||||+-+|+.+++++|+..||+++.+|..|-|||..|+..||  .
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH--~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGH--R   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhh--H
Confidence            35789999999999999999999998764 89999999999999999999999999999999999999999999999  8


Q ss_pred             HHHHHHhhCCC
Q 006616          628 EVLAILSDSHG  638 (638)
Q Consensus       628 eiv~lLle~ga  638 (638)
                      ++|++||..||
T Consensus        81 ~cVklLL~~GA   91 (117)
T KOG4214|consen   81 DCVKLLLQNGA   91 (117)
T ss_pred             HHHHHHHHcCc
Confidence            89999999986

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.37  E-value=3.2e-12  Score=111.50  Aligned_cols=94  Identities=18%  Similarity=0.386  Sum_probs=64.5

Q ss_pred             EEEEEeecC----C---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616          102 QGYLSKRSS----N---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus       102 ~GyL~Kr~~----~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      +|||..|..    +   ..+.|++|||+|. ++.|+||+.+......                                 
T Consensus         2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~-~~~L~~ykd~~~~~~~---------------------------------   47 (104)
T cd01253           2 EGSLERKHELESGGKKASNRSWDNVYGVLC-GQSLSFYKDEKMAAEN---------------------------------   47 (104)
T ss_pred             CceEeEEEEeecCCcccCCCCcceEEEEEe-CCEEEEEecCcccccC---------------------------------
Confidence            688873321    1   3568999999998 5677777754321000                                 


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                        ......|++..+.+....+...++++|.|.+++ ++|+|||+|++|+.+||.+|++
T Consensus        48 --~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          48 --VHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             --CCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence              000113566666666544444677999998766 8999999999999999999975

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.36  E-value=6.5e-12  Score=110.62  Aligned_cols=102  Identities=19%  Similarity=0.352  Sum_probs=73.6

Q ss_pred             EEEEEEeec---------CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616          101 RQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG  171 (638)
Q Consensus       101 k~GyL~Kr~---------~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  171 (638)
                      |+|+|..+-         ...++.|+++||||+ ++.|++|+.......+.                             
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~-g~~L~~yKDe~~~~~~~-----------------------------   51 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILR-GLVLYLQKDEHKPGKSL-----------------------------   51 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEE-CCEEEEEccCccccccc-----------------------------
Confidence            688887442         112458999999998 57777777653211100                             


Q ss_pred             CCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       172 ~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                         ........|.|..++..+..+...|++.|.|.+++ +.|.|||.+++||+.||.+|+.+.+.
T Consensus        52 ---~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~  113 (117)
T cd01230          52 ---SETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA  113 (117)
T ss_pred             ---ccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence               00112245777777766666777889999999997 89999999999999999999988753

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.34  E-value=6.1e-12  Score=111.74  Aligned_cols=117  Identities=34%  Similarity=0.461  Sum_probs=101.4

Q ss_pred             cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHH
Q 006616          516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA  595 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v  595 (638)
                      ++..+...+....+..|+..+.+.+..+..|.||||+|+..++.+++++|+..|++++..+..|.||+|+|+..++.+++
T Consensus        10 ~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   89 (126)
T cd00204          10 PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV   89 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHH
Confidence            34444444555667778888888888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHh
Q 006616          596 KLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS  634 (638)
Q Consensus       596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLl  634 (638)
                      ++|+..|.+++..+..|.||+++|...++  .+++++|+
T Consensus        90 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~Ll  126 (126)
T cd00204          90 KLLLKHGADVNARDKDGRTPLHLAAKNGH--LEVVKLLL  126 (126)
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHhcCC--HHHHHHhC
Confidence            99999999999999999999999999976  78888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.34  E-value=1.1e-11  Score=110.06  Aligned_cols=94  Identities=38%  Similarity=0.586  Sum_probs=89.2

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHH
Q 006616          542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE  621 (638)
Q Consensus       542 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~  621 (638)
                      .|.+|.||||+|+..++.+++++|+..|++++..+..|.||||+|+..+..+++++|++.|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHhhCC
Q 006616          622 SNFADSEVLAILSDSH  637 (638)
Q Consensus       622 ~g~~d~eiv~lLle~g  637 (638)
                      .++  .+++++|++.|
T Consensus        83 ~~~--~~~~~~L~~~~   96 (126)
T cd00204          83 NGN--LDVVKLLLKHG   96 (126)
T ss_pred             cCc--HHHHHHHHHcC
Confidence            987  89999999865

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.34  E-value=2.5e-12  Score=97.92  Aligned_cols=54  Identities=44%  Similarity=0.648  Sum_probs=39.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHH
Q 006616          546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL  599 (638)
Q Consensus       546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl  599 (638)
                      |+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888888888888888888888888888888875

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.3e-12  Score=100.28  Aligned_cols=54  Identities=37%  Similarity=0.439  Sum_probs=33.6

Q ss_pred             cCCC-CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 006616          533 AGTS-EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRC  586 (638)
Q Consensus       533 ~~~~-~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A  586 (638)
                      ++.+ ++++..|..|.||||+||..|+.++|++||+.|++++.+|..|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            4455 89999999999999999999999999999999999999999999999997

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.32  E-value=9.4e-12  Score=105.75  Aligned_cols=82  Identities=16%  Similarity=0.350  Sum_probs=64.6

Q ss_pred             CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccccceeecccceeec
Q 006616          113 RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV  192 (638)
Q Consensus       113 ~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~  192 (638)
                      .++||||||+|. ++.|+||+++.+.                                     ...+...|++..|.|.+
T Consensus        17 ~K~~KrrwF~lk-~~~L~YyK~kee~-------------------------------------~~~p~i~lnl~gcev~~   58 (106)
T cd01237          17 LKGYKQYWFTFR-DTSISYYKSKEDS-------------------------------------NGAPIGQLNLKGCEVTP   58 (106)
T ss_pred             hhhheeEEEEEe-CCEEEEEccchhc-------------------------------------CCCCeEEEecCceEEcc
Confidence            467999999998 7889888876541                                     12233457888999886


Q ss_pred             CCCCCCCcceEEEecCC----eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          193 DADQSDLRFCFRIISPT----KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       193 ~~~~~~rr~cF~I~t~~----rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      +..-..++|+|.+.+|.    ++|+|.|+||+++.+||.|.+-|
T Consensus        59 dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla  102 (106)
T cd01237          59 DVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA  102 (106)
T ss_pred             cccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence            53223557999999988    99999999999999999998754

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=4.1e-12  Score=123.88  Aligned_cols=93  Identities=31%  Similarity=0.431  Sum_probs=84.9

Q ss_pred             CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINA-TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~-~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      +|..|..|.|+|..|+..|++++|++||+.|+|||. ++..+.||||+|+..|+.++.++|++.|+.+...|.-|+|+-.
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaq  117 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQ  117 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHH
Confidence            455677899999999999999999999999999996 4567999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHH
Q 006616          618 LAVESNFADSEVLAIL  633 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lL  633 (638)
                      +|+--|+  .+.|.++
T Consensus       118 mAAFVG~--H~CV~iI  131 (396)
T KOG1710|consen  118 MAAFVGH--HECVAII  131 (396)
T ss_pred             HHHHhcc--hHHHHHH
Confidence            9999998  6677654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.31  E-value=5.4e-12  Score=139.24  Aligned_cols=143  Identities=25%  Similarity=0.237  Sum_probs=112.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      .+||.||.+.|.+-| ++|++.|||||++-....                         +. +......       ....
T Consensus       186 SaLHiAIv~~~~~~V-~lLl~~gADV~aRa~G~F-------------------------F~-~~dqk~~-------rk~T  231 (782)
T KOG3676|consen  186 SALHIAIVNRDAELV-RLLLAAGADVHARACGAF-------------------------FC-PDDQKAS-------RKST  231 (782)
T ss_pred             chHHHHHHhccHHHH-HHHHHcCCchhhHhhccc-------------------------cC-ccccccc-------cccc
Confidence            579999998887765 567799999998532210                         00 0000000       0000


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC--CCCccCCCCCH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD--PRAVNREGKTS  615 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad--~~~~d~~g~Tp  615 (638)
                      +..-.=..|..||.+||..++.+++++|+++|||+|++|..|+|.||..+..-..++..++|++|++  ..++|..|.||
T Consensus       232 ~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTP  311 (782)
T KOG3676|consen  232 NYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTP  311 (782)
T ss_pred             CCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCh
Confidence            1111113599999999999999999999999999999999999999999999999999999999999  89999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHhhC
Q 006616          616 LELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lLle~  636 (638)
                      |.+|+..|.  .+|.+.+++.
T Consensus       312 LtLAaklGk--~emf~~ile~  330 (782)
T KOG3676|consen  312 LTLAAKLGK--KEMFQHILER  330 (782)
T ss_pred             HHHHHHhhh--HHHHHHHHHh
Confidence            999999998  8999988875

>smart00233 PH Pleckstrin homology domain

Probab=99.30  E-value=3.9e-11  Score=102.25  Aligned_cols=97  Identities=30%  Similarity=0.638  Sum_probs=71.8

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      +++|||.++.......|++|||+|.+ +.|+||+......                                    ....
T Consensus         2 ~~~G~l~~~~~~~~~~~~~~~~~L~~-~~l~~~~~~~~~~------------------------------------~~~~   44 (102)
T smart00233        2 IKEGWLYKKSGGKKKSWKKRYFVLFN-STLLYYKSEKAKK------------------------------------DYKP   44 (102)
T ss_pred             ceeEEEEEeCCCccCCceEEEEEEEC-CEEEEEeCCCccc------------------------------------cCCC
Confidence            58999999965345689999999995 6666666543210                                    0122


Q ss_pred             cceeecccceeecCCCCC--CCcceEEEecCCe-eEEEEeCCHHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIKVDADQS--DLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~~--~rr~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ...|.|..+.+....+..  ...++|.|.++++ +++|+|+|++|+..|+.+|+.++
T Consensus        45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             ceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence            344777777666543321  4579999999988 99999999999999999998765

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.28  E-value=1.1e-11  Score=142.26  Aligned_cols=86  Identities=40%  Similarity=0.534  Sum_probs=50.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHH
Q 006616          549 LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSE  628 (638)
Q Consensus       549 pLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~e  628 (638)
                      .||.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+  .+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~--~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF--RE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc--HH
Confidence            3555555555555555555555555555555555555555555555555555555555555555555555555555  55


Q ss_pred             HHHHHhhC
Q 006616          629 VLAILSDS  636 (638)
Q Consensus       629 iv~lLle~  636 (638)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            55555554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=3.4e-12  Score=133.19  Aligned_cols=110  Identities=25%  Similarity=0.307  Sum_probs=86.4

Q ss_pred             CCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q 006616          523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG  602 (638)
Q Consensus       523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g  602 (638)
                      .+....+.-.+..-.|+...+++|.||||-|+..||.+||+|||++|++||+.|.+||||||+|+.+++..+++.|++.|
T Consensus       560 eGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~G  639 (752)
T KOG0515|consen  560 EGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESG  639 (752)
T ss_pred             cchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhcc
Confidence            33333444444445577778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcc-CCCCCHHHHHHH--cCCCcHHHHHHHh
Q 006616          603 ADPRAVN-REGKTSLELAVE--SNFADSEVLAILS  634 (638)
Q Consensus       603 ad~~~~d-~~g~TpL~~A~~--~g~~d~eiv~lLl  634 (638)
                      +-+-+.. .++.||..-+-.  .|+  ..+.++|-
T Consensus       640 aavfAsTlSDmeTa~eKCee~eeGY--~~CsqyL~  672 (752)
T KOG0515|consen  640 AAVFASTLSDMETAAEKCEEMEEGY--DQCSQYLY  672 (752)
T ss_pred             ceEEeeecccccchhhhcchhhhhH--HHHHHHHH
Confidence            8886654 567888776533  344  45666664

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.1e-11  Score=129.45  Aligned_cols=86  Identities=22%  Similarity=0.295  Sum_probs=81.8

Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHH
Q 006616          551 HLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVL  630 (638)
Q Consensus       551 h~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv  630 (638)
                      .-|+..|.+++|+..+..--|+...+..|-||||-|++.||.+||++||+.|+|||+.|.+||||||+|+.+++  .-|+
T Consensus       555 LDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNn--v~~c  632 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNN--VPMC  632 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCc--hHHH
Confidence            34889999999999998888999999999999999999999999999999999999999999999999999987  8999


Q ss_pred             HHHhhCCC
Q 006616          631 AILSDSHG  638 (638)
Q Consensus       631 ~lLle~ga  638 (638)
                      +.|+++||
T Consensus       633 kqLVe~Ga  640 (752)
T KOG0515|consen  633 KQLVESGA  640 (752)
T ss_pred             HHHHhccc
Confidence            99999997

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.25  E-value=7.4e-12  Score=136.40  Aligned_cols=154  Identities=16%  Similarity=0.103  Sum_probs=125.5

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|++|+.+|+... .++|++..+-++..+..+                       .+.++.+...+...++.+++..+.
T Consensus        51 Talhha~Lng~~~i-s~llle~ea~ldl~d~kg-----------------------~~plhlaaw~g~~e~vkmll~q~d  106 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQI-SKLLLDYEALLDLCDTKG-----------------------ILPLHLAAWNGNLEIVKMLLLQTD  106 (854)
T ss_pred             hHHHHHHhcCchHH-HHHHhcchhhhhhhhccC-----------------------cceEEehhhcCcchHHHHHHhccc
Confidence            56888888777664 466667666665555333                       455566666666677777777778


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC--------CCcc
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP--------RAVN  609 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~--------~~~d  609 (638)
                      .+|.....|.||||.||..|+.+++.+||.+|+|+-.+|..+.|+|.+|++.|..++|++|+.....+        ..++
T Consensus       107 ~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~  186 (854)
T KOG0507|consen  107 ILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRP  186 (854)
T ss_pred             CCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998763221        2455


Q ss_pred             CCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616          610 REGKTSLELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       610 ~~g~TpL~~A~~~g~~d~eiv~lLle~g  637 (638)
                      ..+.+|||+|+.+||  .++++.|+++|
T Consensus       187 ~~~~~plHlaakngh--~~~~~~ll~ag  212 (854)
T KOG0507|consen  187 FPAIYPLHLAAKNGH--VECMQALLEAG  212 (854)
T ss_pred             CCCcCCcchhhhcch--HHHHHHHHhcC
Confidence            677889999999999  88999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.23  E-value=2.3e-11  Score=92.58  Aligned_cols=54  Identities=35%  Similarity=0.529  Sum_probs=46.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHh
Q 006616          579 GLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS  634 (638)
Q Consensus       579 G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLl  634 (638)
                      |+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+  .+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~--~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGN--IDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT---HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccC--HHHHHHHC
Confidence            7899999999999999999999999999999999999999999998  99999986

...

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.19  E-value=2.5e-10  Score=98.34  Aligned_cols=100  Identities=24%  Similarity=0.336  Sum_probs=74.3

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      -+++|-|.|..   ++.-+.|||+|-+|-++| -+..-.                                    .....
T Consensus         4 li~eG~L~K~~---rk~~~~R~ffLFnD~LvY-~~~~~~------------------------------------~~~~~   43 (104)
T cd01218           4 LVGEGVLTKMC---RKKPKQRQFFLFNDILVY-GNIVIS------------------------------------KKKYN   43 (104)
T ss_pred             EEecCcEEEee---cCCCceEEEEEecCEEEE-EEeecC------------------------------------Cceee
Confidence            47899999984   567888999999875555 221000                                    00112


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                      ....++|..+.|....++.+.+++|.|.++.++|+++|+|++|+.+||++|+.+|..++.
T Consensus        44 ~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~  103 (104)
T cd01218          44 KQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLLE  103 (104)
T ss_pred             EeeEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence            234467777777654444456899999999999999999999999999999999988763

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.19  E-value=2.8e-11  Score=139.03  Aligned_cols=100  Identities=25%  Similarity=0.364  Sum_probs=91.4

Q ss_pred             cCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 006616          522 SDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR  601 (638)
Q Consensus       522 ~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~  601 (638)
                      ..+....+.+|+..|+++|..|..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++
T Consensus        91 ~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322         91 ASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            34555667778889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -------CCCCCCccCCCCCHHHHHHH
Q 006616          602 -------GADPRAVNREGKTSLELAVE  621 (638)
Q Consensus       602 -------gad~~~~d~~g~TpL~~A~~  621 (638)
                             |++++..+..|.+|+..+..
T Consensus       171 ~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        171 SQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             CCcccccCCCCCccccCCCCccchhhh
Confidence                   99999999999988776643

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.15  E-value=6.1e-11  Score=131.05  Aligned_cols=93  Identities=29%  Similarity=0.403  Sum_probs=85.5

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-----------------------CCCCcHHHHHHHhCCHHHHHHHHh
Q 006616          544 LEGCTLLHLACDSADIGMLELLLQYGANINATD-----------------------SRGLTPLHRCILRGKAMFAKLLLT  600 (638)
Q Consensus       544 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-----------------------~~G~TpLh~A~~~g~~~~v~lLl~  600 (638)
                      ..|.||||+|+.+.+.++|++||+.||||+++-                       +.|..||.+||..++.+|+++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            469999999999999999999999999998641                       357899999999999999999999


Q ss_pred             CCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       601 ~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|||++++|.+|+|.||..+..-.  .++..+++++||
T Consensus       262 ~gAd~~aqDS~GNTVLH~lVi~~~--~~My~~~L~~ga  297 (782)
T KOG3676|consen  262 HGADPNAQDSNGNTVLHMLVIHFV--TEMYDLALELGA  297 (782)
T ss_pred             cCCCCCccccCCChHHHHHHHHHH--HHHHHHHHhcCC
Confidence            999999999999999999988844  889999999986

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.13  E-value=3.1e-10  Score=111.64  Aligned_cols=96  Identities=35%  Similarity=0.504  Sum_probs=89.2

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC-----HHHHHHHHhCCC---CCCCccCCC
Q 006616          541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-----AMFAKLLLTRGA---DPRAVNREG  612 (638)
Q Consensus       541 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-----~~~v~lLl~~ga---d~~~~d~~g  612 (638)
                      ..+..+.+++|.++..+...++.+|+..|++++.+|..|.||||+|+..++     .+++++||+.|+   +.+.+|..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            445668999999999999999999999999999999999999999999999     999999999999   666779999


Q ss_pred             CCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          613 KTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       613 ~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .||||+|+..|+  .+++++|++.|+
T Consensus       148 ~tpl~~A~~~~~--~~~~~~ll~~~~  171 (235)
T COG0666         148 NTPLHWAALNGD--ADIVELLLEAGA  171 (235)
T ss_pred             CchhHHHHHcCc--hHHHHHHHhcCC
Confidence            999999999998  689999999875

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.12  E-value=3.1e-10  Score=95.60  Aligned_cols=94  Identities=37%  Similarity=0.722  Sum_probs=67.3

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      ++|||+++.......|++|||+|.++.+++ |.......                                    ...+.
T Consensus         1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~-~~~~~~~~------------------------------------~~~~~   43 (96)
T cd00821           1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLY-YKKKSSKK------------------------------------SYKPK   43 (96)
T ss_pred             CcchhhhhhChhhCCccEEEEEEECCEEEE-EECCCCCc------------------------------------CCCCc
Confidence            379999885543368999999999554444 44432200                                    11233


Q ss_pred             ceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      ..|+|..+.+....+..+.+++|.|.+.+ +.++|+|+|++|+..|+.+|+.
T Consensus        44 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          44 GSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             ceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence            45777777777644433357999999988 9999999999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.07  E-value=5.2e-10  Score=99.82  Aligned_cols=106  Identities=23%  Similarity=0.498  Sum_probs=62.9

Q ss_pred             EEEEEEeec---------CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616          101 RQGYLSKRS---------SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG  171 (638)
Q Consensus       101 k~GyL~Kr~---------~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  171 (638)
                      |||||+.+-         +...+.|+.-|+||+ ++.|++|+.......+.         +.+..              .
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~-g~~L~~~k~~~~~~~~~---------~~~~~--------------~   57 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQ-GGQLYFYKDEKSPASST---------PPDIQ--------------S   57 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEE-TTEEEEESSHHHHCCT----------BS-----------------S
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEE-CCEEEEEccCcccccCC---------ccccc--------------c
Confidence            789998542         113457999999998 77888887632100000         00000              0


Q ss_pred             CCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       172 ~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                        .....+...|+|..|...+..+-..|+|+|.|.+++ ..|.|||.|++||.+||.+|+-+
T Consensus        58 --~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~  117 (119)
T PF15410_consen   58 --VENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA  117 (119)
T ss_dssp             --S--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred             --cccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence              011223445888877777766777789999999986 79999999999999999999865

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.07  E-value=1.5e-10  Score=129.71  Aligned_cols=176  Identities=18%  Similarity=0.155  Sum_probs=95.9

Q ss_pred             ceecccccccchhhhhhhcccccCccccccch-------hccchhhHHHHHhhhhccccC-----CCcccccccccCCcc
Q 006616          459 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-------SCISSLTLAKAMLLNEQTSLE-----RSSSSLTGNSSDRSS  526 (638)
Q Consensus       459 ~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~-------~~~~~~~l~~~ll~~~~~~~~-----~~~~~l~~~~~~~~~  526 (638)
                      ..+.-+|.+...+|+.+|+..|++-..++-..       .......+++.++..+.....     ....+|.++..++..
T Consensus       826 t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~  905 (2131)
T KOG4369|consen  826 TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ  905 (2131)
T ss_pred             ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc
Confidence            45556677777888888888887654433222       222233444444433211111     112233334444444


Q ss_pred             cccccccCCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q 006616          527 SGSLNLAGTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP  605 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~  605 (638)
                      ...++|++.|.++|..- -+.+|+|-+|+..|+.++|.+||.+.+++..+-..|.|||+-++..|.+++-++||..|||+
T Consensus       906 ~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  906 AATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            45555555555555432 23456666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCcc--CCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          606 RAVN--REGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       606 ~~~d--~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      |+.-  ....|+|-+++..||  ...|.+|+..
T Consensus       986 nasPvp~T~dtalti~a~kGh--~kfv~~lln~ 1016 (2131)
T KOG4369|consen  986 NASPVPNTWDTALTIPANKGH--TKFVPKLLNG 1016 (2131)
T ss_pred             ccCCCCCcCCccceeecCCCc--hhhhHHhhCC
Confidence            5432  223456666666666  4556666543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.06  E-value=1.8e-10  Score=128.96  Aligned_cols=174  Identities=18%  Similarity=0.198  Sum_probs=117.9

Q ss_pred             ecccccccchhhhhhhcccccCccccccchhc-------cchhhHHHHHhhhhcc----ccCCCcccccccccCCccccc
Q 006616          461 WEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSC-------ISSLTLAKAMLLNEQT----SLERSSSSLTGNSSDRSSSGS  529 (638)
Q Consensus       461 ~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~-------~~~~~l~~~ll~~~~~----~~~~~~~~l~~~~~~~~~~~~  529 (638)
                      +..+|.|.+++++.+|+.+|+++...|..+..       .++..++..|+-++.+    ......++|..++.++...++
T Consensus       761 LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vv  840 (2131)
T KOG4369|consen  761 LTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVV  840 (2131)
T ss_pred             ccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHH
Confidence            44567788888888999999999998887732       3444444444433222    111224455556666777777


Q ss_pred             ccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC--CCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          530 LNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS--RGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       530 ~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~--~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      .+|+..|++-..++....|||.+|...|.++++++||..|+.||.+..  .|-.||++|...||.+.++.||+.|-|+|.
T Consensus       841 elLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNa  920 (2131)
T KOG4369|consen  841 ELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA  920 (2131)
T ss_pred             HHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcc
Confidence            788888888888877888888888888888888888888888776543  467777777777777777777777666664


Q ss_pred             c-cCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          608 V-NREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       608 ~-d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      . ..+-+|+|-+|+-.|+  .|+|.+||.+
T Consensus       921 qIeTNrnTaltla~fqgr--~evv~lLLa~  948 (2131)
T KOG4369|consen  921 QIETNRNTALTLALFQGR--PEVVFLLLAA  948 (2131)
T ss_pred             ccccccccceeeccccCc--chHHHHHHHH
Confidence            3 2334566666666665  5566666554

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.04  E-value=4.6e-10  Score=112.20  Aligned_cols=105  Identities=23%  Similarity=0.368  Sum_probs=74.3

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++|+|||.||+.. .++|+.|||+|.++|.|.=|+.+....                                  +.
T Consensus        12 ~~~vvkEgWlhKrGE~-IknWRpRYF~l~~DG~~~Gyr~kP~~~----------------------------------~~   56 (516)
T KOG0690|consen   12 QEDVVKEGWLHKRGEH-IKNWRPRYFLLFNDGTLLGYRSKPKEV----------------------------------QP   56 (516)
T ss_pred             hhhhHHhhhHhhcchh-hhcccceEEEEeeCCceEeeccCCccC----------------------------------CC
Confidence            4567899999999554 568999999999998877666543211                                  11


Q ss_pred             cccccceeecccceeecCCCCCCCcceEEEecCCe----eEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          176 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK----NYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~r----t~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      .+.+...+.+..|...  ..+..|++.|-|..-+.    ..+|-++|++++++|+.|||.+-..+.
T Consensus        57 ~p~pLNnF~v~~cq~m--~~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~  120 (516)
T KOG0690|consen   57 TPEPLNNFMVRDCQTM--KTERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLK  120 (516)
T ss_pred             Ccccccchhhhhhhhh--hccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhh
Confidence            1223334555556554  23457889999988764    356899999999999999998764443

>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.02  E-value=3.2e-10  Score=118.46  Aligned_cols=119  Identities=26%  Similarity=0.531  Sum_probs=100.6

Q ss_pred             chHHHHHHcccCCcccccCCCCCC-CceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          306 EKPIDVLRRVCGNDRCADCGAPEP-DWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       306 ~~~~~~~~~~~~n~~c~dC~~~~p-~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      |+.++.+.++|+|++|++|....+ +|+++.-|-++|..|+|.-|.| .--++|+|+.|-  .++..++..++..||..+
T Consensus        13 ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l-~~ahRvksiSmt--tft~qevs~lQshgNq~~   89 (524)
T KOG0702|consen   13 EKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGL-NPAHRVKSISMT--TFTDQEVSFLQSHGNQVC   89 (524)
T ss_pred             HHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccC-CCccccceeeee--eccccchHHHhhcchhhh
Confidence            788999999999999999999988 9999999999999999999999 567899999998  689999999999999999


Q ss_pred             HHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCC
Q 006616          385 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKD  449 (638)
Q Consensus       385 n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~  449 (638)
                      ..||-..+.-...                     .-|...++...|+ |++.||+.++|......
T Consensus        90 k~i~fkl~D~q~S---------------------~vPD~rn~~~~ke-f~q~~y~~kr~~v~~n~  132 (524)
T KOG0702|consen   90 KEIWFKLFDFQRS---------------------NVPDSRNPQKVKE-FQQEKYVKKRYYVPKNQ  132 (524)
T ss_pred             hhhhhcchhhhhc---------------------cCCCcccchhhHH-HHhhhhccceeecCccc
Confidence            9999877665322                     2344444545555 99999999999866543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.97  E-value=2.7e-10  Score=124.74  Aligned_cols=84  Identities=33%  Similarity=0.491  Sum_probs=80.2

Q ss_pred             CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      .|..|..|+|+||+|+..+...++++||++|+|++.+|. .|+||||.|+.+|+.+|+-+||.+|+.+.++|.+|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            577899999999999999999999999999999999998 5999999999999999999999999999999999999999


Q ss_pred             HHHHc
Q 006616          618 LAVES  622 (638)
Q Consensus       618 ~A~~~  622 (638)
                      ..++-
T Consensus       125 ~~~r~  129 (1267)
T KOG0783|consen  125 FLSRV  129 (1267)
T ss_pred             HHhhc
Confidence            98773

>cd00900 PH-like Pleckstrin homology-like domain

Probab=98.97  E-value=4.7e-09  Score=88.94  Aligned_cols=91  Identities=30%  Similarity=0.536  Sum_probs=62.0

Q ss_pred             EEEEEeecCCC---CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616          102 QGYLSKRSSNL---RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus       102 ~GyL~Kr~~~~---~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      +|||.++....   .+.|++|||+|.++ .|+||+.+.....                                  .   
T Consensus         2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~-~l~~~~~~~~~~~----------------------------------~---   43 (99)
T cd00900           2 EGYLLKLGSDDVSKGKRWKRRWFFLFDD-GLLLYKSDDKKEI----------------------------------K---   43 (99)
T ss_pred             ccEEEEeCCCccccccCceeeEEEEECC-EEEEEEcCCCCcC----------------------------------C---
Confidence            69999886653   36899999999854 5555555432100                                  0   


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecC---CeeEEEEeCCHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISP---TKNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~---~rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                       ...+.+....+....+..+.++||.|+..   .+.+.|+|+|++|++.|+.+|+.
T Consensus        44 -~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~   98 (99)
T cd00900          44 -PGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ   98 (99)
T ss_pred             -CCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence             01233333334332222246799999998   68999999999999999999975

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=98.93  E-value=7e-09  Score=85.41  Aligned_cols=90  Identities=22%  Similarity=0.352  Sum_probs=63.0

Q ss_pred             eeEEEEEEeecCCC-CCCceeeEEEEecCceEEEEecCC-CCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           99 TIRQGYLSKRSSNL-RGDWKRRFFVLDSRGMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~-~~~WkrRwfvL~~~~~l~y~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      +|+.|||....-+. ++.=|+|||||.. ..||||+... +.+++.                                  
T Consensus         1 virkgwl~~~n~~~m~ggsK~~WFVLt~-~~L~wykd~eeKE~kyi----------------------------------   45 (110)
T cd01256           1 VIRKGWLSISNVGIMKGGSKDYWFVLTS-ESLSWYKDDEEKEKKYM----------------------------------   45 (110)
T ss_pred             CeeeeeEEeeccceecCCCcceEEEEec-ceeeeecccccccccce----------------------------------
Confidence            36889999876554 4468999999994 5566666543 333332                                  


Q ss_pred             ccccceeecccceeecCCCC--CCCcceEEEecCC--------eeEEEEeCCHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQ--SDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKIT  230 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~--~~rr~cF~I~t~~--------rt~~lqA~se~e~~~Wi~ai~  230 (638)
                            |.|....++- -++  ..++|||+|..|+        ++..|.|+|.+|.+.|...+-
T Consensus        46 ------lpLdnLk~Rd-ve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasfl  102 (110)
T cd01256          46 ------LPLDGLKLRD-IEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFL  102 (110)
T ss_pred             ------eeccccEEEe-ecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHH
Confidence                  4444444442 223  5678999999875        578899999999999987653

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.90  E-value=5.1e-09  Score=109.09  Aligned_cols=93  Identities=30%  Similarity=0.404  Sum_probs=84.2

Q ss_pred             cCCCCCCcH------HHHHHHhCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCC
Q 006616          541 MDDLEGCTL------LHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGK  613 (638)
Q Consensus       541 ~~d~~G~Tp------Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~  613 (638)
                      .+|.+|.|+      ||..++.|+++.+-.||..||++|..+. .|.||||.|+..|+...+++|+-+|||++..|.+|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM  201 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence            456667665      8999999999999999999999999886 599999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCCCcHHHHHHHhh
Q 006616          614 TSLELAVESNFADSEVLAILSD  635 (638)
Q Consensus       614 TpL~~A~~~g~~d~eiv~lLle  635 (638)
                      ||+.+|-..||  .++.+-|+|
T Consensus       202 tP~~~AR~~gH--~~laeRl~e  221 (669)
T KOG0818|consen  202 TPVDYARQGGH--HELAERLVE  221 (669)
T ss_pred             cHHHHHHhcCc--hHHHHHHHH
Confidence            99999999999  677777765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.89  E-value=4.9e-09  Score=102.70  Aligned_cols=91  Identities=26%  Similarity=0.256  Sum_probs=83.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc-cCCCCCHHHHHHHcCC
Q 006616          546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV-NREGKTSLELAVESNF  624 (638)
Q Consensus       546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~-d~~g~TpL~~A~~~g~  624 (638)
                      -..||.-++..+..+-...||..--++|.+|..|.++|..|+..|+.++|++||+.|||+|.. +..+.||||+|+..|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            467999999999999999999876779999999999999999999999999999999999975 4678999999999998


Q ss_pred             CcHHHHHHHhhCCC
Q 006616          625 ADSEVLAILSDSHG  638 (638)
Q Consensus       625 ~d~eiv~lLle~ga  638 (638)
                        .+|..+|+++||
T Consensus        92 --~dvcrllldaGa  103 (396)
T KOG1710|consen   92 --QDVCRLLLDAGA  103 (396)
T ss_pred             --chHHHHHHhccC
Confidence              779999999996

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=98.83  E-value=2.7e-08  Score=106.17  Aligned_cols=113  Identities=19%  Similarity=0.348  Sum_probs=83.0

Q ss_pred             CCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           94 KGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        94 ~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ++....||||-|+|.+.+ ..+-..||++|-++-+||...+.  ...+                                
T Consensus       267 ~PsreLiKEG~l~Kis~k-~~~~qeRylfLFNd~~lyc~~r~--~~~~--------------------------------  311 (623)
T KOG4424|consen  267 SPSRELIKEGQLQKISAK-NGTTQERYLFLFNDILLYCKPRK--RLPG--------------------------------  311 (623)
T ss_pred             CcHHHHhhccceeeeecc-CCCcceeEEEEehhHHHhhhhhh--hccc--------------------------------
Confidence            344567899999999765 67899999999987767643322  1111                                


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhccCCCC
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPE  243 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~~~~  243 (638)
                       .+...+..+++..+.++- .+...+++.|.|..+++...|||.|+++.++||++|+.+|..+.+...+.
T Consensus       312 -~k~~~r~~~s~~~~~v~~-~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~eTf  379 (623)
T KOG4424|consen  312 -SKYEVRARCSISHMQVQE-DDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCRETF  379 (623)
T ss_pred             -ceeccceeeccCcchhcc-cccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             222333445566666663 34446789999999999999999999999999999999999888775443

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=98.82  E-value=8.3e-09  Score=85.71  Aligned_cols=97  Identities=22%  Similarity=0.419  Sum_probs=61.6

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      ++|||+|+++...|.||||||+|.+  +--|.--...                              +    .+.++.+.
T Consensus         4 ~sGyL~k~Gg~~~KkWKKRwFvL~q--vsQYtfamcs------------------------------y----~ekks~P~   47 (117)
T cd01234           4 HCGYLYAIGKNVWKKWKKRFFVLVQ--VSQYTFAMCS------------------------------Y----REKKAEPT   47 (117)
T ss_pred             eeEEEEeccchhhhhhheeEEEEEc--hhHHHHHHHh------------------------------h----hhhcCCch
Confidence            7999999977678899999999974  2211100000                              0    01112222


Q ss_pred             ceeecccceeecCCCC----------CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQ----------SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~----------~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +-+.|..-+|..-...          ..-||-|..+-..-+..|..++|.|+.-||+|+-.+.
T Consensus        48 e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yrat  110 (117)
T cd01234          48 EFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDENERHLWVQAMYRAT  110 (117)
T ss_pred             hheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence            3334443344321111          1346789888888899999999999999999997764

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.78  E-value=5.7e-09  Score=108.37  Aligned_cols=92  Identities=24%  Similarity=0.351  Sum_probs=86.1

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCCccCCCCCHHHHHHH
Q 006616          543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAVNREGKTSLELAVE  621 (638)
Q Consensus       543 d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~-gad~~~~d~~g~TpL~~A~~  621 (638)
                      +.++..++++|+..|.+..++.+.-.|.|++..|.+.+|+||.|+..|+.+++++||+. +.+++.+|..|+|||+-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34567889999999999999999999999999999999999999999999999999986 89999999999999999999


Q ss_pred             cCCCcHHHHHHHhhC
Q 006616          622 SNFADSEVLAILSDS  636 (638)
Q Consensus       622 ~g~~d~eiv~lLle~  636 (638)
                      .+|  .+++++|.+.
T Consensus       583 F~h--~~v~k~L~~~  595 (622)
T KOG0506|consen  583 FKH--KEVVKLLEEA  595 (622)
T ss_pred             cCc--HHHHHHHHHH
Confidence            998  8999999764

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.72  E-value=1.2e-07  Score=82.67  Aligned_cols=106  Identities=16%  Similarity=0.247  Sum_probs=72.4

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      .-|++|-|.|-+.. .+.++.|+|+|-++-++|..++... ...|.                 .             ...
T Consensus         3 elI~EG~L~ki~~~-~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~-----------------~-------------~~~   51 (112)
T cd01261           3 EFIMEGTLTRVGPS-KKAKHERHVFLFDGLMVLCKSNHGQPRLPGA-----------------S-------------SAE   51 (112)
T ss_pred             cccccCcEEEEecc-cCCcceEEEEEecCeEEEEEeccCccccccc-----------------c-------------cce
Confidence            34789999988543 4679999999996555554433221 11110                 0             012


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ....+.++|....|.-.++..+.++.|.|++. ++++.|+|.|++|..+||++|..+|.
T Consensus        52 y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~  110 (112)
T cd01261          52 YRLKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT  110 (112)
T ss_pred             EEEEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence            23345577776666644444446899999985 68999999999999999999998874

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]

Probab=98.71  E-value=6.7e-09  Score=115.45  Aligned_cols=100  Identities=28%  Similarity=0.421  Sum_probs=71.6

Q ss_pred             CCcceeEEEEEEeecCCCCCCceeeEEEEecC-ceEEEEecCC-CCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616           95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV  172 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~-~~l~y~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  172 (638)
                      .....+-+|||||| |...|.||.|||||+++ -.|+||.... .+|+|.+.+.-                         
T Consensus      1630 ~teNr~~eG~LyKr-GA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLae------------------------- 1683 (1732)
T KOG1090|consen 1630 PTENRIPEGYLYKR-GAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAE------------------------- 1683 (1732)
T ss_pred             cccccCcccchhhc-chhhcccccceeEecCCccceeeecccccccccchhhhhh-------------------------
Confidence            33445669999999 55678999999999884 3577776653 34555432210                         


Q ss_pred             CCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          173 HDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       173 ~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                             .+.+.+    +  .+...|++--|+|.+.+|+|.|+|.+..+..+|++.||+++
T Consensus      1684 -------vesv~~----~--~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1684 -------VESVAL----I--GPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred             -------hhhhcc----c--CccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence                   011111    1  23455677779999999999999999999999999999876

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=98.65  E-value=5.1e-08  Score=83.03  Aligned_cols=100  Identities=22%  Similarity=0.341  Sum_probs=56.3

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      .||+|+.|.. .++.||||||+|+.+|+.|+-+.....+..                  +..+  ..++     ...   
T Consensus         2 ~~g~LylK~~-gkKsWKk~~f~LR~SGLYy~~Kgksk~srd------------------L~cl--~~f~-----~~n---   52 (114)
T cd01259           2 MEGPLYLKAD-GKKSWKKYYFVLRSSGLYYFPKEKTKNTRD------------------LACL--NLLH-----GHN---   52 (114)
T ss_pred             ccceEEEccC-CCccceEEEEEEeCCeeEEccCCCcCCHHH------------------HHHH--Hhcc-----cCc---
Confidence            4899999954 478999999999987765432222111100                  0000  0000     000   


Q ss_pred             ceeecccceeecCCCCCCCcceEEEecCC------e-eEEEEeCCHHHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISPT------K-NYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~------r-t~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                       .........+..   ..-.|||-|..+.      + ...|+||+|+.+..||.||+-+.
T Consensus        53 -vY~~~~~kKk~k---APTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K  108 (114)
T cd01259          53 -VYTGLGWRKKYK---SPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK  108 (114)
T ss_pred             -EEEEechhhccC---CCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence             000111111111   1236888887653      1 35799999999999999998553

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF13606 Ank_3: Ankyrin repeat

Probab=98.58  E-value=6.8e-08  Score=63.63  Aligned_cols=28  Identities=43%  Similarity=0.718  Sum_probs=17.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCc
Q 006616          546 GCTLLHLACDSADIGMLELLLQYGANIN  573 (638)
Q Consensus       546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn  573 (638)
                      |+||||+||..|+.++|++||++|+|||
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666666655

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=98.53  E-value=6e-07  Score=77.17  Aligned_cols=92  Identities=23%  Similarity=0.360  Sum_probs=62.7

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++++|++.|+.+ ++  +++|||+|.+...|+|.+......+                                   
T Consensus        10 ge~Il~~g~v~K~kg-l~--~kkR~liLTd~PrL~Yvdp~~~~~K-----------------------------------   51 (104)
T PF14593_consen   10 GELILKQGYVKKRKG-LF--AKKRQLILTDGPRLFYVDPKKMVLK-----------------------------------   51 (104)
T ss_dssp             T--EEEEEEEEEEET-TE--EEEEEEEEETTTEEEEEETTTTEEE-----------------------------------
T ss_pred             CCeEEEEEEEEEeec-eE--EEEEEEEEccCCEEEEEECCCCeEC-----------------------------------
Confidence            456889999999954 44  8999999997779999877644222                                   


Q ss_pred             cccccceeecccc-eeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       176 ~~~~~~~i~l~~~-~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                           +.|.+..+ ++...  +   .-.|.|.||+|+|+|...+ .+...|+++|+.++...
T Consensus        52 -----GeI~~~~~l~v~~k--~---~~~F~I~tp~RtY~l~d~~-~~A~~W~~~I~~~~~~~  102 (104)
T PF14593_consen   52 -----GEIPWSKELSVEVK--S---FKTFFIHTPKRTYYLEDPE-GNAQQWVEAIEEVKKQY  102 (104)
T ss_dssp             -----EEE--STT-EEEEC--S---SSEEEEEETTEEEEEE-TT-S-HHHHHHHHHHHHHHH
T ss_pred             -----cEEecCCceEEEEc--c---CCEEEEECCCcEEEEECCC-CCHHHHHHHHHHHHHHh
Confidence                 33444322 33321  1   2469999999999999844 56888999999988643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.52  E-value=1.3e-07  Score=62.27  Aligned_cols=30  Identities=43%  Similarity=0.575  Sum_probs=28.1

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          578 RGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      +|+||||+|+..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999974

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.51  E-value=1.5e-07  Score=63.63  Aligned_cols=31  Identities=45%  Similarity=0.642  Sum_probs=16.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCcccC
Q 006616          546 GCTLLHLACDSADIGMLELLLQYGANINATD  576 (638)
Q Consensus       546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d  576 (638)
                      |.||||+|+..|+.+++++||++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4555555555555555555555555555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=98.49  E-value=1.1e-06  Score=74.98  Aligned_cols=40  Identities=23%  Similarity=0.451  Sum_probs=34.7

Q ss_pred             CCCCCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          194 ADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       194 ~~~~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      .+..|.++-|+|....  ++.+|-|+++.|++.|+.+|..-|
T Consensus        69 a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~  110 (112)
T cd01242          69 ADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI  110 (112)
T ss_pred             cCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence            4556789999999876  789999999999999999998765

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=3e-07  Score=97.60  Aligned_cols=85  Identities=32%  Similarity=0.391  Sum_probs=63.9

Q ss_pred             cHHHHHHHhCCHHHHHHHH--HcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCC
Q 006616          548 TLLHLACDSADIGMLELLL--QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFA  625 (638)
Q Consensus       548 TpLh~Aa~~g~~~~v~~Ll--~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~  625 (638)
                      -|||+++.....+-++.++  +.+..|+..|..|+||||+|+..|+.+.+++|+.+||++..+|.+|++|||.|+..|+ 
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~-  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN-  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC-
Confidence            3588888777766554433  3356678888888888888888888888888888888888888888888888888886 


Q ss_pred             cHHHHHHHh
Q 006616          626 DSEVLAILS  634 (638)
Q Consensus       626 d~eiv~lLl  634 (638)
                       .+++..++
T Consensus       101 -~q~i~~vl  108 (560)
T KOG0522|consen  101 -EQIITEVL  108 (560)
T ss_pred             -HHHHHHHH
Confidence             44444443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.47  E-value=2.1e-07  Score=62.82  Aligned_cols=33  Identities=45%  Similarity=0.609  Sum_probs=31.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccC
Q 006616          578 RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR  610 (638)
Q Consensus       578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~  610 (638)
                      +|+||||+|+..|+.+++++||++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=98.46  E-value=2.2e-06  Score=74.24  Aligned_cols=39  Identities=15%  Similarity=0.429  Sum_probs=32.4

Q ss_pred             CCCCCCcceEEEecC-------CeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          194 ADQSDLRFCFRIISP-------TKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       194 ~~~~~rr~cF~I~t~-------~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      .+..|.++-|+|.+.       ..+.+|-|+|+.|++.|+.||.+.
T Consensus        73 a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          73 ASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             cCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            455688999999873       367889999999999999998753

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.42  E-value=5.4e-07  Score=95.94  Aligned_cols=87  Identities=29%  Similarity=0.378  Sum_probs=77.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCC--Ccc--cCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCC
Q 006616          549 LLHLACDSADIGMLELLLQYGAN--INA--TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF  624 (638)
Q Consensus       549 pLh~Aa~~g~~~~v~~Ll~~gad--vn~--~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~  624 (638)
                      -|..|+...++..+-+||.+|..  +|.  -+.+|+|+||+||..|++.+.++|+=+|+|+.++|.+|.|||.||-..|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            36667778888899999999854  333  45578999999999999999999999999999999999999999999998


Q ss_pred             CcHHHHHHHhhCC
Q 006616          625 ADSEVLAILSDSH  637 (638)
Q Consensus       625 ~d~eiv~lLle~g  637 (638)
                        .|++.+|+.+|
T Consensus       707 --qec~d~llq~g  717 (749)
T KOG0705|consen  707 --QECIDVLLQYG  717 (749)
T ss_pred             --HHHHHHHHHcC
Confidence              89999999987

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.38  E-value=1.9e-07  Score=97.28  Aligned_cols=89  Identities=21%  Similarity=0.282  Sum_probs=76.7

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      -.++.|++.||+..+.++++ .|.|++.                                                    
T Consensus       508 i~~~~aa~~GD~~alrRf~l-~g~D~~~----------------------------------------------------  534 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFAL-QGMDLET----------------------------------------------------  534 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHH-hcccccc----------------------------------------------------
Confidence            46777889999988888774 3666644                                                    


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCC
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA  603 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~ga  603 (638)
                          .|.+.+|+||.||..|+++++++||.. +.+++.+|.+|+|||.-|...+|.+++++|-+.-.
T Consensus       535 ----~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  535 ----KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             ----cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence                456789999999999999999999986 89999999999999999999999999999987643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.37  E-value=5.8e-07  Score=95.15  Aligned_cols=100  Identities=24%  Similarity=0.398  Sum_probs=90.2

Q ss_pred             CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC--CcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCC
Q 006616          534 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN--INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE  611 (638)
Q Consensus       534 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad--vn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~  611 (638)
                      ..|.+.-.++.+..|.||+|+..|+-++|+++|++|..  +++.|..|.|+||-|+..++..++.+|++.||.+...|..
T Consensus       887 ~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~k  966 (1004)
T KOG0782|consen  887 LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSK  966 (1004)
T ss_pred             hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccC
Confidence            45677778888999999999999999999999999864  7788899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCCCcHHHHHHHhh
Q 006616          612 GKTSLELAVESNFADSEVLAILSD  635 (638)
Q Consensus       612 g~TpL~~A~~~g~~d~eiv~lLle  635 (638)
                      |.||-.-|-..|-  .++..+|-.
T Consensus       967 g~tp~eraqqa~d--~dlaayle~  988 (1004)
T KOG0782|consen  967 GKTPQERAQQAGD--PDLAAYLES  988 (1004)
T ss_pred             CCChHHHHHhcCC--chHHHHHhh
Confidence            9999999988874  778777753

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=98.33  E-value=1.7e-06  Score=74.19  Aligned_cols=97  Identities=16%  Similarity=0.310  Sum_probs=58.5

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      +|||||.--+.. -+.|||+|++|+.+++-+|......+.-..+.                                  .
T Consensus         1 lkEGWmVHyT~~-d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIP----------------------------------L   45 (117)
T cd01239           1 LKEGWMVHYTSS-DNRRKKHYWRLDSKAITLYQEESGSRYYKEIP----------------------------------L   45 (117)
T ss_pred             CccceEEEEecC-ccceeeeEEEecCCeEEEEEcCCCCeeeEEee----------------------------------h
Confidence            479999866443 36899999999976665554443332211110                                  0


Q ss_pred             cceeecccceeecCCCCCCCcceEEEecCCeeEEEEeC--------------------CHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAE--------------------SALDQMDWIEKITGV  232 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~--------------------se~e~~~Wi~ai~~~  232 (638)
                      .+-+.+..+.... .......+||+|+|.+.+|+.+.+                    ..+..+.|-+||++|
T Consensus        46 sEIl~V~~~~~~~-~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          46 AEILSVSSNNGDS-VLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             HHheEEeccCCCc-CCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            1112222221111 112356899999999999999775                    234568898888764

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.18  E-value=2.4e-06  Score=90.89  Aligned_cols=71  Identities=28%  Similarity=0.378  Sum_probs=63.7

Q ss_pred             cccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 006616          531 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR  601 (638)
Q Consensus       531 lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~  601 (638)
                      ++......++..|..|+||||+|+..|+.+.++.|+.+||++..+|..||+|||-|+..|+..++..+|.+
T Consensus        40 l~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   40 LLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            34446678888999999999999999999999999999999999999999999999999999888766654

>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=2.7e-06  Score=90.46  Aligned_cols=109  Identities=25%  Similarity=0.415  Sum_probs=68.1

Q ss_pred             cCCCcceeEEEEEEee---------cCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccc
Q 006616           93 AKGKVQTIRQGYLSKR---------SSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRW  163 (638)
Q Consensus        93 ~~~~~~~~k~GyL~Kr---------~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~  163 (638)
                      +.+.+.+-|+|+|..+         +...++.||.-|-+|+  |++.|+.+..-++....+                   
T Consensus       500 ~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~Lk--G~vLYlqkDey~p~kals-------------------  558 (774)
T KOG0932|consen  500 PDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLK--GMVLYLQKDEYKPGKALS-------------------  558 (774)
T ss_pred             CCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHh--hheEEeeccccCcccchh-------------------
Confidence            3445566799999744         2334568999898995  555555554332211100                   


Q ss_pred             cccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          164 LSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                                  ..-....|.+.-+-..+..+-..++|.|.|.+.+ |.|.|||.|.+||++||..|+-+.+
T Consensus       559 ------------e~~lknavsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA  618 (774)
T KOG0932|consen  559 ------------ESDLKNAVSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA  618 (774)
T ss_pred             ------------hhhhhhhhhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence                        0000111223222222334556788999999987 8999999999999999999985543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.07  E-value=6.6e-06  Score=76.61  Aligned_cols=74  Identities=20%  Similarity=0.170  Sum_probs=66.4

Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN  609 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d  609 (638)
                      +.++|.+|..|||||+.|+..|+.+.|.+|+.+| +.|...|..|.+++.+|-..|+.++|..|.+.-.+-...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            5689999999999999999999999999999999 8999999999999999999999999999988755544433

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.07  E-value=2.6e-05  Score=86.92  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=61.4

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ...+.|||+|.+.. . .|++|||.+.++++...+...... .+.                               ..+.
T Consensus       376 Dv~~~G~l~k~~~~-~-~wk~ry~~l~~~~l~~~~~~~~~~-~~~-------------------------------~~~~  421 (478)
T PTZ00267        376 DVTHGGYLYKYSSD-M-RWKKRYFYIGNGQLRISLSENPEN-DGV-------------------------------APKS  421 (478)
T ss_pred             CcccceEEeccCCC-c-chhhheEEecCCceEEEecccccc-CCC-------------------------------CCcc
Confidence            34679999998654 3 499999999876665554432211 010                               0000


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ...  .++..+...+......+++||.|.+. .+.+.|+|+|++|+++||.+||.++
T Consensus       422 ~~l--~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        422 VNL--ETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             ccH--HHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence            000  01111111111123346899999764 4778899999999999999999886

>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]

Probab=98.03  E-value=8.6e-06  Score=86.28  Aligned_cols=36  Identities=28%  Similarity=0.599  Sum_probs=28.9

Q ss_pred             CCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEE
Q 006616           95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYY  131 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y  131 (638)
                      ..+.+.++|+||.|.. .+|.|||.||||+..|+.|.
T Consensus       313 s~~~pei~GfL~~K~d-gkKsWKk~yf~LR~SGLYys  348 (622)
T KOG3751|consen  313 SSSPPEIQGFLYLKED-GKKSWKKHYFVLRRSGLYYS  348 (622)
T ss_pred             cCCCccccceeeeccc-ccccceeEEEEEecCcceEc
Confidence            3567789999999954 47899999999998775443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.01  E-value=1.2e-05  Score=74.88  Aligned_cols=66  Identities=26%  Similarity=0.280  Sum_probs=62.3

Q ss_pred             CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       569 gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g-ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      +.++|++|..|||||+.|+..|..+.|.+|+.+| +.|.+.|..|.+++.+|-+.|+  .++|.+|-+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~--~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGA--QAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcCh--HHHHHHHHHH
Confidence            5789999999999999999999999999999999 9999999999999999999998  8899988764

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.01  E-value=1.4e-05  Score=81.56  Aligned_cols=75  Identities=28%  Similarity=0.333  Sum_probs=64.8

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHc
Q 006616          547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES  622 (638)
Q Consensus       547 ~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~  622 (638)
                      .--|..||+.|..+.|+.|++.|.+||++|.....||.+|+..||.++|++||++||-...-..+|.-.+ +++.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhhh
Confidence            3458999999999999999999999999999999999999999999999999999998776666676543 44333

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=97.99  E-value=8.2e-05  Score=63.37  Aligned_cols=34  Identities=21%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             cceEEEecCC---eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          200 RFCFRIISPT---KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       200 r~cF~I~t~~---rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +++|.|++.+   ++|.|||.|+++.+.||++|+.+|
T Consensus        59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence            7999998764   699999999999999999999886

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.98  E-value=1.3e-05  Score=90.18  Aligned_cols=101  Identities=16%  Similarity=0.318  Sum_probs=70.8

Q ss_pred             ceeEEEEEEeec-CCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           98 QTIRQGYLSKRS-SNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        98 ~~~k~GyL~Kr~-~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      .+.-.|||++-. +..++.|.||||+|. +|.+.|.+.+.+..                                    .
T Consensus       989 dVEYrGFLtmfed~sgfGaWhRyWc~L~-gg~I~fWk~PdDEk------------------------------------r 1031 (1116)
T KOG3640|consen  989 DVEYRGFLTMFEDGSGFGAWHRYWCALH-GGEIKFWKYPDDEK------------------------------------R 1031 (1116)
T ss_pred             ceeeeeeeeeeeccCCCchhhhhhHHhc-CCeeeeecCcchhc------------------------------------c
Confidence            355689998653 235678999999997 67777777665421                                    1


Q ss_pred             ccccceeecccceeecCCC----CCCCcceEEEec---------C----Ce-eEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDAD----QSDLRFCFRIIS---------P----TK-NYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~----~~~rr~cF~I~t---------~----~r-t~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      -.+.+.|+|..|+-..-..    --.|++.|.|.+         |    .| ...|.|++.+|++.|+.+|+.+..-
T Consensus      1032 K~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1032 KVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred             cCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence            2344568998887653211    125678899883         1    13 4679999999999999999988753

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.95  E-value=1.1e-05  Score=90.58  Aligned_cols=92  Identities=27%  Similarity=0.234  Sum_probs=76.8

Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC----------CC
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP----------RA  607 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~----------~~  607 (638)
                      ++|+.|.-|+++|+.|+.+.+.+++++|++.+..+       .-+|.+|+..|..++|++++.+-...          ..
T Consensus        54 ninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~  126 (822)
T KOG3609|consen   54 NINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSP  126 (822)
T ss_pred             chhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcc
Confidence            56677788999999999999999999999987766       34899999999999999999873322          12


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .-..+.|||.+||..++  .||+++|++.|+
T Consensus       127 ~ft~ditPliLAAh~Nn--yEil~~Ll~kg~  155 (822)
T KOG3609|consen  127 HFTPDITPLMLAAHLNN--FEILQCLLTRGH  155 (822)
T ss_pred             cCCCCccHHHHHHHhcc--hHHHHHHHHcCC
Confidence            23467899999999988  999999999986

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=97.93  E-value=0.00011  Score=62.45  Aligned_cols=51  Identities=16%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             eecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          183 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       183 i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ++|..-.|.--++...-+++|.|.++.+++.+||+|+++..+||..|++++
T Consensus        48 ~~L~~i~V~ni~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~   98 (100)
T cd01226          48 YSLNSVAVVNVKDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK   98 (100)
T ss_pred             EehHHeEEEecCCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence            444433333224445668999999999999999999999999999999886

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=97.85  E-value=2.8e-05  Score=85.32  Aligned_cols=96  Identities=17%  Similarity=0.397  Sum_probs=65.0

Q ss_pred             eeEEEEEEeecCC----CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           99 TIRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        99 ~~k~GyL~Kr~~~----~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      +.|+|.|.|+..+    .++.+|||||.|. +.-|.|.+.++..+.+.+.+                             
T Consensus       565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT-~~~Ls~~Ksp~~q~~~~Ipl-----------------------------  614 (800)
T KOG2059|consen  565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLT-TEELSYAKSPGKQPIYTIPL-----------------------------  614 (800)
T ss_pred             eecccceEeccccccchhhhhhhheEEEec-cceeEEecCCccCcccceeH-----------------------------
Confidence            3455555555433    2247889999998 56777777776655443211                             


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                            ..|   .+.-+.+....+.++||+|+..+|+.+|||.+-.|..+|+.+|..+.
T Consensus       615 ------~nI---~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs  664 (800)
T KOG2059|consen  615 ------SNI---RAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS  664 (800)
T ss_pred             ------HHH---HHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence                  111   11112223345678999999999999999999999999999998763

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=97.79  E-value=8.3e-05  Score=61.32  Aligned_cols=84  Identities=20%  Similarity=0.335  Sum_probs=59.9

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      ++.|.+.||++ .  .++||-++|.+...|+|.+......+|.                                     
T Consensus         2 l~~g~v~Kr~g-l--f~kkR~LiLTd~PrL~yvdp~~~~~Kge-------------------------------------   41 (89)
T cd01262           2 LKIGAVKKRKG-L--FAKKRQLILTNGPRLIYVDPVKKVVKGE-------------------------------------   41 (89)
T ss_pred             ceeeeeeehhc-c--ccceeeEEEecCceEEEEcCCcCeEEeE-------------------------------------
Confidence            57899999965 3  5799999999888898887654443332                                     


Q ss_pred             cceeecccc--eeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTS--TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       180 ~~~i~l~~~--~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                         |.+...  .+...  +   ...|.|.||+|+|+|. +.+.....|+++|+.+
T Consensus        42 ---Ip~s~~~l~v~~~--~---~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~   87 (89)
T cd01262          42 ---IPWSDVELRVEVK--N---SSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDL   87 (89)
T ss_pred             ---ecccccceEEEEe--c---CccEEEECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence               222220  12221  1   3469999999999995 5568899999999865

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.72  E-value=5.1e-05  Score=77.52  Aligned_cols=57  Identities=21%  Similarity=0.277  Sum_probs=53.9

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          580 LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       580 ~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .--|..||+.|..+.|+.|++.|.++|.+|....+||.+|+.+||  .++|++||++||
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGH--e~vvklLLenGA   93 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGH--EDVVKLLLENGA   93 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCc--HHHHHHHHHcCC
Confidence            345889999999999999999999999999999999999999999  789999999997

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=97.72  E-value=0.00016  Score=62.47  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             CCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHH
Q 006616          198 DLRFCFRIISPT--KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       198 ~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      ++.+||-|.+..  .+++|..|+..|+..|..||+.
T Consensus        72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence            567999999987  5899999999999999999874

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=97.67  E-value=0.0007  Score=58.42  Aligned_cols=94  Identities=16%  Similarity=0.245  Sum_probs=63.1

Q ss_pred             eEEEEEEeecCCCCCCc-eeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616          100 IRQGYLSKRSSNLRGDW-KRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~W-krRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      |.+|=|.+.+..  +.| +.|+|+|-++.++|+.+....   +                                 ....
T Consensus         3 i~~Gel~~~s~~--~g~~q~R~~FLFD~~LI~CKkd~~r---~---------------------------------~~~~   44 (109)
T cd01224           3 FLQGEATRQKQN--KGWNSSRVLFLFDHQMVLCKKDLIR---R---------------------------------DHLY   44 (109)
T ss_pred             eEeeeEEEEecc--cCCcccEEEEEecceEEEEeccccc---C---------------------------------CcEE
Confidence            578988888532  233 368999985555554332111   0                                 1123


Q ss_pred             ccceeecccceeecCCCCCCC------cceEEEecCC--eeEEEEeCCHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQSDL------RFCFRIISPT--KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~r------r~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      -.+.|++..+.|...++..+.      ++.|.|+..+  ..|.|.|.|+++...||+||..
T Consensus        45 yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          45 YKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             EEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence            455688888877754443322      6889999876  5799999999999999999853

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.65  E-value=3.7e-05  Score=85.38  Aligned_cols=75  Identities=28%  Similarity=0.378  Sum_probs=64.1

Q ss_pred             ceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCC
Q 006616          459 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEG  538 (638)
Q Consensus       459 ~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~  538 (638)
                      +|+.++ ..+...+++.|+.+|+|++..|.+.                                                
T Consensus        55 alH~~~-S~~k~~~l~wLlqhGidv~vqD~ES------------------------------------------------   85 (1267)
T KOG0783|consen   55 ALHIAV-SENKNSFLRWLLQHGIDVFVQDEES------------------------------------------------   85 (1267)
T ss_pred             eeeeee-ccchhHHHHHHHhcCceeeeccccc------------------------------------------------
Confidence            455444 4556678888989999998887654                                                


Q ss_pred             CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHh
Q 006616          539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILR  589 (638)
Q Consensus       539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~  589 (638)
                             |+||||-|+..|+++++-+||.+|+.+..+|..|..||.+-++-
T Consensus        86 -------G~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   86 -------GYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             -------cchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhhc
Confidence                   99999999999999999999999999999999999999987763

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.63  E-value=8.4e-05  Score=79.23  Aligned_cols=87  Identities=21%  Similarity=0.216  Sum_probs=74.7

Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC--CCCccCCCCCHHHHHHHcCCCcH
Q 006616          550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD--PRAVNREGKTSLELAVESNFADS  627 (638)
Q Consensus       550 Lh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad--~~~~d~~g~TpL~~A~~~g~~d~  627 (638)
                      |..|+..+.+--+.-+-.+|.++-.++.+-.+.||+|+..|+-++|+++|++|..  +++.|..|.|+||-|+..++  .
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~--r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN--R  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc--h
Confidence            4556666666555556667999989999999999999999999999999999864  57788999999999999987  7


Q ss_pred             HHHHHHhhCCC
Q 006616          628 EVLAILSDSHG  638 (638)
Q Consensus       628 eiv~lLle~ga  638 (638)
                      .|+.+|+++||
T Consensus       948 ~vc~~lvdaga  958 (1004)
T KOG0782|consen  948 AVCQLLVDAGA  958 (1004)
T ss_pred             HHHHHHHhcch
Confidence            89999999986

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=97.63  E-value=4.8e-05  Score=64.32  Aligned_cols=99  Identities=17%  Similarity=0.357  Sum_probs=63.1

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .|.+||+.|-++.....|++|||-|..|.+=+|......++                  .++                 .
T Consensus         3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~------------------eLi-----------------~   47 (116)
T cd01240           3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKP------------------ELI-----------------T   47 (116)
T ss_pred             eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCC------------------cEE-----------------E
Confidence            47899999997766678999999999877655422211100                  000                 0


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      . +  ++.  .|.++........|+.|...+ +.++|+++++-+..+|...|+++-..+.
T Consensus        48 M-~--~i~--~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~Sq  102 (116)
T cd01240          48 M-D--QIE--DVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRESQ  102 (116)
T ss_pred             e-e--hhh--hcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence            0 0  000  111111111235899988865 6799999999999999999998875443

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.55  E-value=0.00086  Score=75.13  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=32.5

Q ss_pred             CCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          198 DLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       198 ~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      +.+|.|-|... .|.+.|||.+++|++.||.+||.++.
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (496)
T PTZ00283        453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG  490 (496)
T ss_pred             CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence            46899999765 58999999999999999999998863

>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]

Probab=97.53  E-value=4.8e-05  Score=81.27  Aligned_cols=107  Identities=21%  Similarity=0.412  Sum_probs=68.2

Q ss_pred             CCCcceeEEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616           94 KGKVQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG  171 (638)
Q Consensus        94 ~~~~~~~k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  171 (638)
                      ++..+++.||-|..+.|.  ..+.|+.|||+|.+-.++|...+...                                  
T Consensus       730 n~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~----------------------------------  775 (851)
T KOG3723|consen  730 NQDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD----------------------------------  775 (851)
T ss_pred             cCCCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCC----------------------------------
Confidence            344567889999866555  45899999999975444442222111                                  


Q ss_pred             CCCccccccceeeccc-ceeecCC---CCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          172 VHDEKSAARHTVNLLT-STIKVDA---DQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       172 ~~~~~~~~~~~i~l~~-~~v~~~~---~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                        |...   ..|+|.. -+||...   ....-+-.|+|.|.+.||.|.|.+++..++|++.|+-+++.+...
T Consensus       776 --dS~~---~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~r  842 (851)
T KOG3723|consen  776 --DSDD---CPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKER  842 (851)
T ss_pred             --CCCC---CCccHHHhhhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHHH
Confidence              1111   1133321 1222111   111235679999999999999999999999999999888765543

>PLN02866 phospholipase D

Probab=97.45  E-value=0.00047  Score=80.26  Aligned_cols=36  Identities=25%  Similarity=0.517  Sum_probs=33.4

Q ss_pred             CCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          198 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       198 ~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +.+|.|.|.+.+|++.|.|.|...++.|+.+|+.+.
T Consensus       272 ~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~  307 (1068)
T PLN02866        272 PLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAG  307 (1068)
T ss_pred             CCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHH
Confidence            558999999999999999999999999999998875

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=97.32  E-value=0.0022  Score=57.03  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=27.3

Q ss_pred             CCcceEEEe------cCCeeEEEEeCCHHHHHHHHHHHH
Q 006616          198 DLRFCFRII------SPTKNYTLQAESALDQMDWIEKIT  230 (638)
Q Consensus       198 ~rr~cF~I~------t~~rt~~lqA~se~e~~~Wi~ai~  230 (638)
                      ..++.|.|.      ...+.+.|+|+|+.|+.+||+||.
T Consensus        81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence            347899996      334689999999999999999873

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]

Probab=97.31  E-value=0.00022  Score=75.15  Aligned_cols=92  Identities=26%  Similarity=0.445  Sum_probs=69.7

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      ...|+|.|. -+....|+-|||+|. +|-|.||++..+...|                                     .
T Consensus        25 e~~G~lskw-tnyi~gwqdRyv~lk-~g~Lsyykse~E~~hG-------------------------------------c   65 (611)
T KOG1739|consen   25 ERCGVLSKW-TNYIHGWQDRYVVLK-NGALSYYKSEDETEHG-------------------------------------C   65 (611)
T ss_pred             hhcceeeee-ecccccccceEEEEc-ccchhhhhhhhhhhcc-------------------------------------c
Confidence            358999999 445568999999998 5666667776554333                                     3


Q ss_pred             cceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ++.|.|....+.+...+   ...|.|.+....+.|.|.+.+.++.|+.+|+--.
T Consensus        66 Rgsi~l~ka~i~ahEfD---e~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk  116 (611)
T KOG1739|consen   66 RGSICLSKAVITAHEFD---ECRFDISVNDNVWYLRAQDPDHRQQWIDALEWMK  116 (611)
T ss_pred             ceeeEeccCCcccccch---hheeeeEeccceeeehhcCcHHHHHHHHHHHHHh
Confidence            45577777777765443   3459999998999999999999999999997644

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]

Probab=97.31  E-value=0.00013  Score=79.72  Aligned_cols=97  Identities=22%  Similarity=0.446  Sum_probs=67.0

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ....|.||+.+..+ ..+.|+|||||+++ |...||+++....                                     
T Consensus       247 e~~ekSgy~~~~~s-~~k~lkrr~~v~k~-gqi~~y~~~~~~~-------------------------------------  287 (936)
T KOG0248|consen  247 ETMEKSGYWTQLTS-RIKSLKRRYVVFKN-GQISFYRKHNNRD-------------------------------------  287 (936)
T ss_pred             chhhcccchhcchH-HHHHHHhHheeecc-ceEEEEEcCCCcc-------------------------------------
Confidence            44578999998854 45789999999985 5555555543311                                     


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      ..+...+++..-++..   ..+-.+.|++++...+|+|.++|+.-..+|+..|+..|.-
T Consensus       288 ~~p~s~~d~~s~~~~~---~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv  343 (936)
T KOG0248|consen  288 EEPASKIDIRSVTKLE---QQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKA  343 (936)
T ss_pred             ccccCcccccccceee---ccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHH
Confidence            1111223443222221   1233578999999999999999999999999999999864

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=97.29  E-value=0.0037  Score=56.03  Aligned_cols=36  Identities=17%  Similarity=0.299  Sum_probs=32.5

Q ss_pred             CcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          199 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       199 rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      -.+||.|.+++|+.-|-|++.++.+-|+.+|+..+.
T Consensus        87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~  122 (123)
T PF12814_consen   87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ  122 (123)
T ss_pred             cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            468999999999999999999999999999986553

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.16  E-value=0.00013  Score=83.89  Aligned_cols=98  Identities=27%  Similarity=0.383  Sum_probs=69.4

Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC------Ccc
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR------AVN  609 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~------~~d  609 (638)
                      +-.....|.+|.-.+|.++..|..-.+.+.+.+|..++.+|..||||||+|+.+|+..++..|++.|++..      ..+
T Consensus       598 ~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~  677 (975)
T KOG0520|consen  598 GSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPET  677 (975)
T ss_pred             ccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCC
Confidence            44455556677777888554444333444446688889999999999999999999999998887776543      334


Q ss_pred             CCCCCHHHHHHHcCCCcHHHHHHHhh
Q 006616          610 REGKTSLELAVESNFADSEVLAILSD  635 (638)
Q Consensus       610 ~~g~TpL~~A~~~g~~d~eiv~lLle  635 (638)
                      -.|.|+-.+|..+|+  ..+--+|-+
T Consensus       678 p~g~ta~~la~s~g~--~gia~~lse  701 (975)
T KOG0520|consen  678 PGGKTAADLARANGH--KGIAGYLSE  701 (975)
T ss_pred             CCCCchhhhhhcccc--cchHHHHhh
Confidence            568889898888887  455555543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.14  E-value=0.00027  Score=81.43  Aligned_cols=94  Identities=20%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCCccCCCCCHHHHH
Q 006616          542 DDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREGKTSLELA  619 (638)
Q Consensus       542 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~-~gad~~~~d~~g~TpL~~A  619 (638)
                      ....|+|.||+++..++.-+++.+++- |...+..|..|...+|+ |..++.+++-+|+. .|..++++|..|+||||+|
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            345689999999999999999999985 76677778888888888 45566777666655 5899999999999999999


Q ss_pred             HHcCCCcHHHHHHHhhCCC
Q 006616          620 VESNFADSEVLAILSDSHG  638 (638)
Q Consensus       620 ~~~g~~d~eiv~lLle~ga  638 (638)
                      +..|+  ..++..|.+.||
T Consensus       649 a~~G~--e~l~a~l~~lga  665 (975)
T KOG0520|consen  649 AFRGR--EKLVASLIELGA  665 (975)
T ss_pred             hhcCH--HHHHHHHHHhcc
Confidence            99999  789999987764

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.07  E-value=0.00042  Score=80.20  Aligned_cols=87  Identities=29%  Similarity=0.229  Sum_probs=77.7

Q ss_pred             CcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCH
Q 006616          513 SSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA  592 (638)
Q Consensus       513 ~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~  592 (638)
                      ....++.+...+......+|+..|+++|..|..|+||||.+...|+...+.+|+++||+.++.+..|.+||++|....+.
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~  735 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA  735 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence            35567777788888888999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHH
Q 006616          593 MFAKLLL  599 (638)
Q Consensus       593 ~~v~lLl  599 (638)
                      +++-+|.
T Consensus       736 d~~~l~~  742 (785)
T KOG0521|consen  736 DIVLLLR  742 (785)
T ss_pred             cHHHHHh
Confidence            7765543

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=96.99  E-value=0.0036  Score=70.40  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             ceEEEecC---CeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          201 FCFRIISP---TKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       201 ~cF~I~t~---~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      |.|.|...   ++...|-|-+.+|...||+||+.+|...+..
T Consensus        74 yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~  115 (719)
T PLN00188         74 YVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDS  115 (719)
T ss_pred             EEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccc
Confidence            67777654   4678999999999999999999999865433

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=96.86  E-value=0.019  Score=50.43  Aligned_cols=35  Identities=26%  Similarity=0.523  Sum_probs=28.1

Q ss_pred             cceEEEec--CC---eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          200 RFCFRIIS--PT---KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       200 r~cF~I~t--~~---rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      +++|+|.+  +.   .+|+|||.|.++.++||..|+.+++
T Consensus        74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~  113 (114)
T cd01232          74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ  113 (114)
T ss_pred             CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence            45677654  43   6899999999999999999987653

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.49  E-value=0.0028  Score=67.39  Aligned_cols=62  Identities=26%  Similarity=0.273  Sum_probs=49.9

Q ss_pred             HHHHHHHHHcCCCCcc------cCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHH
Q 006616          559 IGMLELLLQYGANINA------TDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV  620 (638)
Q Consensus       559 ~~~v~~Ll~~gadvn~------~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~  620 (638)
                      ...+++|.+++++.|.      .+..--|+||+|+..|...||.+||+.|+|+.++|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5677888888777653      3344568899999999999999999989999999999999988775

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=96.47  E-value=0.019  Score=50.09  Aligned_cols=37  Identities=8%  Similarity=0.331  Sum_probs=31.9

Q ss_pred             CcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          199 LRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       199 rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      -+++|.|+..+  ..|+|.|.|+++++.||.+|.-|+..
T Consensus        75 ~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn  113 (116)
T cd01223          75 WKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN  113 (116)
T ss_pred             eEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            45789999876  47999999999999999999888753

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00248 ANK ankyrin repeats

Probab=96.32  E-value=0.0064  Score=37.82  Aligned_cols=27  Identities=44%  Similarity=0.746  Sum_probs=15.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCC
Q 006616          546 GCTLLHLACDSADIGMLELLLQYGANI  572 (638)
Q Consensus       546 G~TpLh~Aa~~g~~~~v~~Ll~~gadv  572 (638)
                      |.||||+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=96.17  E-value=0.03  Score=48.19  Aligned_cols=53  Identities=17%  Similarity=0.297  Sum_probs=38.9

Q ss_pred             ceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +.+.|..-+|....+..+.++.|+|..+- -...+-|.+.+|..+||..|+..+
T Consensus        56 GkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~  109 (111)
T cd01225          56 GKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN  109 (111)
T ss_pred             eeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence            44566665666423333557999999886 467788899999999999998643

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00248 ANK ankyrin repeats

Probab=96.14  E-value=0.0093  Score=37.04  Aligned_cols=29  Identities=45%  Similarity=0.609  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          578 RGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      .|.||||+|+..++.+++++|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999888764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=96.00  E-value=0.04  Score=46.01  Aligned_cols=29  Identities=34%  Similarity=0.582  Sum_probs=24.7

Q ss_pred             EEE-ecCCeeEEEEeCCHHHHHHHHHHHHH
Q 006616          203 FRI-ISPTKNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       203 F~I-~t~~rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      |.+ .++.++|+|-|.|..|+.+||.+|+.
T Consensus        63 ~~~~~~~~KSf~~~asS~~Er~eW~~hI~~   92 (96)
T cd01228          63 FRIHNKNGKSYTFLLSSDYERSEWRESIQK   92 (96)
T ss_pred             hhccccCCceEEEEecCHHHHHHHHHHHHH
Confidence            444 45789999999999999999999875

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.93  E-value=0.015  Score=66.21  Aligned_cols=121  Identities=20%  Similarity=0.092  Sum_probs=91.5

Q ss_pred             cceecccccccchhhhhhhccccc---CccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEV---DVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG  534 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~ga---DvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~  534 (638)
                      ...+.|+..||...|.+.|.....   ++|+.|.-|                       ...+..+..+.+.....+|+.
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lG-----------------------r~al~iai~nenle~~eLLl~   83 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLG-----------------------RLALHIAIDNENLELQELLLD   83 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHh-----------------------hhceecccccccHHHHHHHhc
Confidence            567789999999999998876554   777777655                       233455556666667777777


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCC---------c-ccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q 006616          535 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANI---------N-ATDSRGLTPLHRCILRGKAMFAKLLLTRGAD  604 (638)
Q Consensus       535 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadv---------n-~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad  604 (638)
                      .+..+       .-+|.+|+..|..++|++++.+-...         + ..-..+-|||.+||..++.||+++||++|+.
T Consensus        84 ~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   84 TSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             Ccccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            65544       35899999999999999999873322         1 1113467999999999999999999999998


Q ss_pred             CCCc
Q 006616          605 PRAV  608 (638)
Q Consensus       605 ~~~~  608 (638)
                      +...
T Consensus       157 i~~P  160 (822)
T KOG3609|consen  157 IPIP  160 (822)
T ss_pred             CCCC
Confidence            7654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.72  E-value=0.013  Score=62.63  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=41.6

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 006616          543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCI  587 (638)
Q Consensus       543 d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~  587 (638)
                      +..--|+||+|+..|...+|..||..|+|+..+|..|+||..++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            334679999999999999999999999999999999999999887

>PF15404 PH_4: Pleckstrin homology domain

Probab=95.63  E-value=0.078  Score=50.59  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             CCeeEEEEeCCHHHHHHHHHHHHH
Q 006616          208 PTKNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       208 ~~rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      +.|+++|.|.|..|++.||-+|..
T Consensus       160 ~gks~VF~ARSRqERD~WV~~I~~  183 (185)
T PF15404_consen  160 SGKSMVFMARSRQERDLWVLAINT  183 (185)
T ss_pred             CCcEEEEEeccHHHHHHHHHHHHh
Confidence            457899999999999999999875

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]

Probab=95.58  E-value=0.0038  Score=70.15  Aligned_cols=92  Identities=24%  Similarity=0.445  Sum_probs=64.5

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      +..|||+.+=++ -..|+|-|.|..+-.+++|+..+++.+..+                                     
T Consensus       925 qLsg~Llrkfkn-ssgwqkLwvvft~fcl~fyKS~qD~~~las-------------------------------------  966 (1036)
T KOG3531|consen  925 QLSGYLLRKFKN-SSGWQKLWVVFTNFCLFFYKSHQDSEPLAS-------------------------------------  966 (1036)
T ss_pred             hhhHHHHHHhhc-cccceeeeeeecceeeEeeccccccccccc-------------------------------------
Confidence            468999866343 237999999998655555555554433221                                     


Q ss_pred             cceeecccceee--cCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIK--VDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       180 ~~~i~l~~~~v~--~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                         +.|+.-++-  ..++.+.+.|.|.|.-.+..|.|.|++.--...||+.|+.+
T Consensus       967 ---lPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen  967 ---LPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred             ---ccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcC
Confidence               223322222  23455677899999999999999999999999999998754

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=95.44  E-value=0.26  Score=44.56  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=31.1

Q ss_pred             cceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          200 RFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       200 r~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      ..+|+|.+..  .+|+|||.|++..+.|+..|...+..
T Consensus        80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~  117 (133)
T cd01227          80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS  117 (133)
T ss_pred             ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            5679988765  48999999999999999999988754

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=95.34  E-value=0.014  Score=65.87  Aligned_cols=93  Identities=16%  Similarity=0.362  Sum_probs=64.9

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .+++.|||-|-+........|||.-+......||-..+...++|                                    
T Consensus        86 p~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~------------------------------------  129 (1186)
T KOG1117|consen   86 PVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKG------------------------------------  129 (1186)
T ss_pred             chhhcchhhccCcCcccccCccceecCCCCccccCCCCCCCCCC------------------------------------
Confidence            36899999999776666789999999866555553333222222                                    


Q ss_pred             cccceeecccc-eeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTS-TIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       178 ~~~~~i~l~~~-~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                          .|.+... .|+..     ...-|+|++.+|++.|.++++.++..|++.++++...
T Consensus       130 ----~i~va~is~v~~~-----gd~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~~  179 (1186)
T KOG1117|consen  130 ----PIPVAAISAVRNF-----GDNKFEVITNQRTFVFRQESEGERFIWVSPLQSALKE  179 (1186)
T ss_pred             ----ceeeehhhhhhhc-----cCceEEEEecceEEEEecCCcccceeeechhhhcchh
Confidence                1222211 22211     1345999999999999999999999999999987643

>PF15406 PH_6: Pleckstrin homology domain

Probab=95.17  E-value=0.053  Score=46.36  Aligned_cols=28  Identities=21%  Similarity=0.469  Sum_probs=24.0

Q ss_pred             EEEecCCeeEEEEeCCHHHHHHHHHHHH
Q 006616          203 FRIISPTKNYTLQAESALDQMDWIEKIT  230 (638)
Q Consensus       203 F~I~t~~rt~~lqA~se~e~~~Wi~ai~  230 (638)
                      |.+.......+|||.|..||+.||.+|.
T Consensus        83 F~f~~~G~khtF~A~s~aERD~Wv~~lk  110 (112)
T PF15406_consen   83 FHFKIKGHKHTFEAASAAERDNWVAQLK  110 (112)
T ss_pred             EEEEeCCceeeeecCCHHHhccHHHHhh
Confidence            5555577889999999999999999885

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=94.94  E-value=0.0065  Score=65.96  Aligned_cols=94  Identities=20%  Similarity=0.402  Sum_probs=60.4

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCce----EEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGM----LYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~----l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..||||--+.+.-|.||||||+|-.-..    ++-|+.+                                        +
T Consensus       466 hsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrek----------------------------------------k  505 (1218)
T KOG3543|consen  466 HSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREK----------------------------------------K  505 (1218)
T ss_pred             cceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhc----------------------------------------c
Confidence            4899998866666789999999964211    1111211                                        1


Q ss_pred             ccccceeecccceeecCCCCC---CCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQS---DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~---~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      .-+.+-|.|..-+|...+..+   +-++-|.-+-..-+..|..+++.|+.-|++|+-.+..
T Consensus       506 aepqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratg  566 (1218)
T KOG3543|consen  506 AEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATG  566 (1218)
T ss_pred             cChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhC
Confidence            122233455555555432221   2244577776777899999999999999999987754

>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]

Probab=94.12  E-value=0.034  Score=63.90  Aligned_cols=95  Identities=21%  Similarity=0.327  Sum_probs=60.5

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      -.+|||+|. .+..+.|.+|||+|. +|.+.||+.....                                     ....
T Consensus        78 ~~~g~l~k~-~n~~~~~~~r~f~l~-~g~ls~~~~~~~~-------------------------------------~~~~  118 (799)
T KOG1737|consen   78 SLEGILLKW-RNYSKGPSSRWFVLS-GGLLSYYFDNSFS-------------------------------------KTTC  118 (799)
T ss_pred             cccceeecc-ccccCCcccceEEec-CcceeeeccCCcc-------------------------------------ccCC
Confidence            358999999 445778999999999 9999998765331                                     1122


Q ss_pred             cceeecccceeecCCCCCCCcceEEEec-CCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          180 RHTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t-~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                      .+.+.+....+..   ...+.  +.+.. ...+|++.+.+..++..|+.+++-+-.....
T Consensus       119 ~~~~~~~~a~i~~---~~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~~~~~~~  173 (799)
T KOG1737|consen  119 GGGINLVTAWIQN---GERMD--ICSVDGSCQIYLVELSKKLQRQGWLHALELAPLIAVE  173 (799)
T ss_pred             CCccccccccccc---CCCcc--cchhhcccchhhhhhhHHHhhcchhhhhhhccchhhh
Confidence            2233443333331   11112  22221 2467889999999999999999876433333

>PF15408 PH_7: Pleckstrin homology domain

Probab=94.11  E-value=0.03  Score=45.34  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=24.9

Q ss_pred             ceEEEecCCe-eEEEEeCCHHHHHHHHHHHHH
Q 006616          201 FCFRIISPTK-NYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       201 ~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~  231 (638)
                      |-|-..++++ ...+-|+|.+-++.||++++.
T Consensus        64 ~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~   95 (104)
T PF15408_consen   64 FGFLMYSPSRRHVQCFASSKKVCQSWIQVMNS   95 (104)
T ss_pred             EEEEEecCCcchhhhhhhHHHHHHHHHHHhcC
Confidence            5677777875 455789999999999998863

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=92.61  E-value=0.47  Score=41.82  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=28.0

Q ss_pred             CcceEEEecCC----eeEEEEeCCHHHHHHHHHHHHH
Q 006616          199 LRFCFRIISPT----KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       199 rr~cF~I~t~~----rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      ...||.|+...    ++.+|-|+|+++++.|++.|+.
T Consensus        78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence            36899998754    4799999999999999998863

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=91.18  E-value=0.33  Score=41.00  Aligned_cols=35  Identities=9%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             CCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHH
Q 006616          197 SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       197 ~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      +|+.+.|.|...+ -.|+|.|.+++++++|+..|+.
T Consensus        71 PD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          71 PDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY  106 (107)
T ss_pred             cCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence            3567899998765 5799999999999999999874

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.82  E-value=0.74  Score=44.82  Aligned_cols=90  Identities=20%  Similarity=0.218  Sum_probs=59.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC----CCCcHHHHHHH--hCCHHHHHHHHhCC-CCCCCc---cCCCCCH
Q 006616          546 GCTLLHLACDSADIGMLELLLQYGANINATDS----RGLTPLHRCIL--RGKAMFAKLLLTRG-ADPRAV---NREGKTS  615 (638)
Q Consensus       546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~----~G~TpLh~A~~--~g~~~~v~lLl~~g-ad~~~~---d~~g~Tp  615 (638)
                      -.++|-+|...+..+++-+||.+ -....+|.    .+.--+-|+..  ..+..+.+.+|.+| ++||.+   -+.|.|-
T Consensus       179 A~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            35778888877778888888764 22222221    12223334333  23566788888887 677653   4678899


Q ss_pred             HHHHHHcCCCcHHHHHHHhhCCC
Q 006616          616 LELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |+-|+.++.  .+++.+||++||
T Consensus       258 LDNA~Ky~~--~emi~~Llk~GA  278 (284)
T PF06128_consen  258 LDNAMKYKN--SEMIAFLLKYGA  278 (284)
T ss_pred             HHhHHhcCc--HHHHHHHHHcCc
Confidence            999998876  889999999886

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=89.38  E-value=4  Score=35.39  Aligned_cols=38  Identities=13%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          197 SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       197 ~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      .+.++.|-|.|..+...|.|+|..+.+.|++.|+.-+.
T Consensus        67 ~~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~  104 (110)
T PF08458_consen   67 GEERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS  104 (110)
T ss_pred             CceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999877553

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]

Probab=89.27  E-value=0.1  Score=57.85  Aligned_cols=102  Identities=14%  Similarity=-0.047  Sum_probs=63.4

Q ss_pred             hhcCCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCC
Q 006616           91 SAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG  170 (638)
Q Consensus        91 ~~~~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  170 (638)
                      .-+++...+.+.|||.|+.. .++.|++|||++. ++.+.||+.+.+.+.+.+....                       
T Consensus       251 kSgy~~~~~s~~k~lkrr~~-v~k~gqi~~y~~~-~~~~~~p~s~~d~~s~~~~~~~-----------------------  305 (936)
T KOG0248|consen  251 KSGYWTQLTSRIKSLKRRYV-VFKNGQISFYRKH-NNRDEEPASKIDIRSVTKLEQQ-----------------------  305 (936)
T ss_pred             cccchhcchHHHHHHHhHhe-eeccceEEEEEcC-CCccccccCcccccccceeecc-----------------------
Confidence            34556677788999998854 5779999999998 5566666666554443211100                       


Q ss_pred             CCCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          171 GVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       171 ~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                          ...   -.+.+.+.++         .+.|+    ..++.+-++...-+.+||++.+..-....
T Consensus       306 ----~~s---~~fqli~~t~---------~~~~~----~~s~~lt~dw~~iL~~~iKv~~~~~~a~~  352 (936)
T KOG0248|consen  306 ----GAA---YAFQLITSTD---------KMNFM----TESERTTHDWVTILSAAIKATTLREMASR  352 (936)
T ss_pred             ----chh---HHhhhhhhce---------eEEEe----ccChhhhhhhHHHHHHHHHHHhccchhhh
Confidence                000   0122222222         23333    35678889999999999999988764433

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]

Probab=88.27  E-value=0.47  Score=54.02  Aligned_cols=107  Identities=21%  Similarity=0.249  Sum_probs=70.7

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+.+|-|.|-++   +.-++|-|+|-++-+|| ..+.-.   .                                +..
T Consensus       748 rE~ir~g~llK~sk---kgLqqrmfFLfsdilly-tsk~~~---~--------------------------------~~~  788 (1036)
T KOG3531|consen  748 REFIRSGCLLKLSK---KGLQQRMFFLFSDILLY-TSKGPD---V--------------------------------QKC  788 (1036)
T ss_pred             hhhhhcCCchhhcc---ccchhhhhhhhhhhhee-ccCCCC---h--------------------------------hhe
Confidence            34678999998854   45678888888665555 222101   0                                001


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhccCCCC
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPE  243 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~~~~~  243 (638)
                      ....+.+.+. -++.-..++..-++||.|.+..++.+..|.+..+.+.|+..++.+|..+.++.+++
T Consensus       789 fri~g~lP~~-l~~en~en~~s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~~~~~  854 (1036)
T KOG3531|consen  789 FRINGDLPLT-LTMENSENEWSVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKKSSPA  854 (1036)
T ss_pred             eEeccCCceE-eeeecccccccCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhccccCCCC
Confidence            1111223333 23332334446689999999999999999999999999999999998777765543

>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras

Probab=88.10  E-value=0.55  Score=49.46  Aligned_cols=26  Identities=42%  Similarity=0.804  Sum_probs=19.8

Q ss_pred             ceeEEEEEEeecCC-----CCCCceeeEEEE
Q 006616           98 QTIRQGYLSKRSSN-----LRGDWKRRFFVL  123 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~-----~~~~WkrRwfvL  123 (638)
                      ..+|+|++.||...     .+..||||||.|
T Consensus       302 ~~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l  332 (333)
T cd05135         302 VTVKEGYLHKRKTEGPQLLTRFAFKKRYFWL  332 (333)
T ss_pred             chhhhhHhhhccccCCCCcccccccceeeec
Confidence            45799999999742     223699999987

It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.

>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL

Probab=86.65  E-value=0.45  Score=49.29  Aligned_cols=28  Identities=25%  Similarity=0.551  Sum_probs=21.9

Q ss_pred             cceeEEEEEEeecCC----CCCCceeeEEEEe
Q 006616           97 VQTIRQGYLSKRSSN----LRGDWKRRFFVLD  124 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~----~~~~WkrRwfvL~  124 (638)
                      ...+|+|+|.||..+    .++.||||||.|.
T Consensus       281 ~~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~  312 (313)
T cd05394         281 PVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLT  312 (313)
T ss_pred             chhhHHHHHHhhccCCCccccccchhheeecC
Confidence            345799999999744    3468999999985

In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.

>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1

Probab=84.73  E-value=0.48  Score=49.54  Aligned_cols=29  Identities=28%  Similarity=0.657  Sum_probs=21.9

Q ss_pred             CcceeEEEEEEeecCC----CCCCceeeEEEEe
Q 006616           96 KVQTIRQGYLSKRSSN----LRGDWKRRFFVLD  124 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~----~~~~WkrRwfvL~  124 (638)
                      ...++|+|++.||..+    .++.||||||.|.
T Consensus       283 ~~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt  315 (315)
T cd05128         283 EPVVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT  315 (315)
T ss_pred             CchhhhhhhhHhhcccCCCccccchhheeeecC
Confidence            3456899999988643    3458999999873

The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.

>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]

Probab=83.90  E-value=16  Score=39.67  Aligned_cols=80  Identities=16%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             CceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccccceeecccceeecCC
Q 006616          115 DWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDA  194 (638)
Q Consensus       115 ~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~  194 (638)
                      .-+.|||+|..+-+|++.-.+..                               .      ..+-.+.+.+....|....
T Consensus       324 d~~dRy~~LF~~~llflsvs~rM-------------------------------s------~fIyegKlp~tG~iV~klE  366 (661)
T KOG2070|consen  324 DEKDRYLLLFPNVLLFLSVSPRM-------------------------------S------GFIYEGKLPTTGMIVTKLE  366 (661)
T ss_pred             chhhheeeeccceeeeeEecccc-------------------------------c------hhhhccccccceeEEeehh
Confidence            34689999998777776544321                               0      1122233444444555422


Q ss_pred             CCCCCcceEEEecCCe-eEEEEeCCHHHHHHHHHHHHH
Q 006616          195 DQSDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       195 ~~~~rr~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~  231 (638)
                      +....+..|+|..+.- ....-++.+.|..+|+++++.
T Consensus       367 dte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~  404 (661)
T KOG2070|consen  367 DTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK  404 (661)
T ss_pred             hhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence            2223356699887763 356789999999999999985

>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4)

Probab=83.02  E-value=0.86  Score=47.36  Aligned_cols=27  Identities=26%  Similarity=0.594  Sum_probs=20.9

Q ss_pred             ceeEEEEEEeecCC----CCCCceeeEEEEe
Q 006616           98 QTIRQGYLSKRSSN----LRGDWKRRFFVLD  124 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~----~~~~WkrRwfvL~  124 (638)
                      .++|+|+|.||..+    .++.||||||.|.
T Consensus       279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt  309 (310)
T cd05134         279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLT  309 (310)
T ss_pred             chhhhhhHHHhcccCCcccccchhheeeecC
Confidence            45799999987533    3457999999986

Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=82.35  E-value=2.3  Score=41.57  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=41.9

Q ss_pred             CCHHHHHHHHHcC-CCCcc---cCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q 006616          557 ADIGMLELLLQYG-ANINA---TDSRGLTPLHRCILRGKAMFAKLLLTRGAD  604 (638)
Q Consensus       557 g~~~~v~~Ll~~g-advn~---~d~~G~TpLh~A~~~g~~~~v~lLl~~gad  604 (638)
                      .+..+++..|.+| ++||.   .-+.|.|-|.-|..+++.+++.+||++||-
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            3578899999998 68886   346799999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1729 consensus FYVE finger containing protein [General function prediction only]

Probab=80.65  E-value=0.43  Score=48.93  Aligned_cols=41  Identities=32%  Similarity=0.550  Sum_probs=36.2

Q ss_pred             CcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          199 LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       199 rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      -+.+..|.+..+.+.+-|.+..|+.+|+..|..+....++.
T Consensus       106 ~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~  146 (288)
T KOG1729|consen  106 VRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSK  146 (288)
T ss_pred             cccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence            35578899999999999999999999999999998888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	638
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		1e-26
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		3e-25
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		6e-08
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		3e-25
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		6e-08
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		3e-25
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		6e-08
3feh_A	386	Crystal Structure Of Full Length Centaurin Alpha-1		2e-19
3fm8_C	392	Crystal Structure Of Full Length Centaurin Alpha-1		3e-19
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		4e-19
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-19
2iqj_A	134	Crystal Structure Of The Gap Domain Of Smap1l (Loc6		1e-16
2crr_A	141	Solution Structure Of Arfgap Domain From Human Smap		1e-15
2p57_A	144	Gap Domain Of Znf289, An Id1-Regulated Zinc Finger		2e-14
2crw_A	149	Solution Structure Of The Arfgap Domain Of Adp-Ribo		6e-14
3sub_A	163	Crystal Structure Of The Catalytic Domain Of Plasmo		7e-14
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-12
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		9e-12
3dwd_A	147	Crystal Structure Of The Arfgap Domain Of Human Arf		2e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-11
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-11
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-10
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-09
2owa_A	138	Crystal Structure Of Putative Gtpase Activating Pro		2e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-08
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		9e-08
1uoh_A	226	Human Gankyrin Length = 226		1e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		5e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-06
2olm_A	140	Arfgap Domain Of Hiv-1 Rev Binding Protein Length =		1e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		8e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		9e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		1e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		1e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-04
2d9l_A	134	Solution Structure Of The Arfgap Domain Of Human Ri		2e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		4e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		7e-04

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 134/314 (42%), Gaps = 79/314 (25%)
Query: 309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
           I  ++R+ GND C DCGAP+P W S NLG+L CIECSG+HR LGVH S+++SLTLDV   
Sbjct: 8   ISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV--L 65
Query: 369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
             S + L +++GNA  N + E  L S                         KP+    + 
Sbjct: 66  GTSELLLAKNIGNAGFNEIMECCLPSEDPV---------------------KPNPGSDMI 104
Query: 429 VKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYE 488
            ++ +I AKY E+ + RK   +    +  H + E V+T       R I      + A  +
Sbjct: 105 ARKDYITAKYMERRYARKKHADTA--AKLHSLCEAVKT-------RDIFGL---LQAYAD 152
Query: 489 QVSCISSLTLAKAMLLNEQXXXXXXXXXXXXXXXXXXXXXXXXXAGTSEGQTMDDLEGCT 548
            V     + LA                                      G   D+    T
Sbjct: 153 GVDLTEKIPLAN-------------------------------------GHEPDE----T 171
Query: 549 LLHLACDSAD---IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
            LHLA  S D   + +++ L+Q   N++    +G T LH C L   A   KLLL   A  
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 606 RAVNREGKTSLELA 619
              N  G+T L++A
Sbjct: 232 EIANESGETPLDIA 245

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 23/135 (17%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
           ++ V GN +C DC  P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD   WEP 
Sbjct: 39  VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 372 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 431
           ++ L   LGN   N ++E  +++                     + + KP  S S   KE
Sbjct: 97  LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 432 KFIHAKYAEKLFVRK 446
            +IHAKY EK F+ K
Sbjct: 136 AWIHAKYVEKKFLTK 150

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 563 ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
           E LLQ GAN+N  DS G  PLH   + G    A L L RGAD  A + EG+  L +A+E+
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 623 NFAD 626
             AD
Sbjct: 312 ANAD 315

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 23/135 (17%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
           ++ V GN +C DC  P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD   WEP 
Sbjct: 39  VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 372 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 431
           ++ L   LGN   N ++E  +++                     + + KP  S S   KE
Sbjct: 97  LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 432 KFIHAKYAEKLFVRK 446
            +IHAKY EK F+ K
Sbjct: 136 AWIHAKYVEKKFLTK 150

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 563 ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
           E LLQ GAN+N  DS G  PLH   + G    A L L RGAD  A + EG+  L +A+E+
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 623 NFAD 626
             AD
Sbjct: 312 ANAD 315

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 23/135 (17%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
           ++ V GN +C DC  P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD   WEP 
Sbjct: 39  VQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPE 96
Query: 372 VITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKE 431
           ++ L   LGN   N ++E  +++                     + + KP  S S   KE
Sbjct: 97  LVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKE 135
Query: 432 KFIHAKYAEKLFVRK 446
            +IHAKY EK F+ K
Sbjct: 136 AWIHAKYVEKKFLTK 150

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 563 ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
           E LLQ GAN+N  DS G  PLH   + G    A L L RGAD  A + EG+  L +A+E+
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 623 NFAD 626
             AD
Sbjct: 312 ANAD 315

>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 26/144 (18%)
Query: 309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
           +++L+R  GN RCADCGAP+PDWAS  LGV +C+ CSG+HRN+   +SKV+S+ LD   W
Sbjct: 26  LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AW 81
Query: 369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
           E + +    S GN  A + +E  +            PS +           +P+ SD   
Sbjct: 82  EEAQVEFMASHGNDAARARFESKV------------PSFYY----------RPTPSDCQL 119
Query: 429 VKEKFIHAKYAEKLFVRKPKDNQY 452
           ++E++I AKY  + F+   K   Y
Sbjct: 120 LREQWIRAKYERQEFIYPEKQEPY 143

>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 26/144 (18%)
Query: 309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
           +++L+R  GN RCADCGAP+PDWAS  LGV +C+ CSG+HRN+   +SKV+S+ LD   W
Sbjct: 28  LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AW 83
Query: 369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
           E + +    S GN  A + +E  +            PS +           +P+ SD   
Sbjct: 84  EEAQVEFMASHGNDAARARFESKV------------PSFYY----------RPTPSDCQL 121
Query: 429 VKEKFIHAKYAEKLFVRKPKDNQY 452
           ++E++I AKY  + F+   K   Y
Sbjct: 122 LREQWIRAKYERQEFIYPEKQEPY 145

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 317 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLF 376
           GN +C DCGA +P W S NLGVL CI+CSGVHR LGV  S+++SLTLD  +  PS + L 
Sbjct: 41  GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLA 98
Query: 377 QSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHA 436
            ++GN   N V E  L S                         KPS    +  +  +I A
Sbjct: 99  LNMGNTSFNEVMEAQLPSHGG---------------------PKPSAESDMGTRRDYIMA 137
Query: 437 KYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVN 478
           KY E  F R+            ++W  +   D  +V     N
Sbjct: 138 KYVEHRFARRCTPE------PQRLWTAICNRDLLSVLEAFAN 173

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 66/130 (50%), Gaps = 23/130 (17%)
Query: 317 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLF 376
           GN +C DCGA +P W S NLGVL CI+CSGVHR LGV  S+++SLTLD  +  PS + L 
Sbjct: 22  GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLA 79
Query: 377 QSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHA 436
            ++GN   N V E  L S                         KPS    +  +  +I A
Sbjct: 80  LNMGNTSFNEVMEAQLPSHGG---------------------PKPSAESDMGTRRDYIMA 118
Query: 437 KYAEKLFVRK 446
           KY E  F R+
Sbjct: 119 KYVEHRFARR 128

>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
           N  CADC +  P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD   W    I   Q
Sbjct: 27  NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQ 84
Query: 378 SLGNAFANSVWEELL 392
            +GN  AN ++E  L
Sbjct: 85  EMGNGKANRLYEAYL 99

>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
           N  CADC A  P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD   W    I   Q
Sbjct: 29  NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTAEQIQCMQ 86
Query: 378 SLGNAFANSVWEELL 392
            +GN  A  ++E  L
Sbjct: 87  DMGNTKARLLYEANL 101

>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
           LR V  N  C DCGA  P WAS+  GV +CI+CSGVHR+LGVH+S +RS  LD   W   
Sbjct: 31  LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WNWF 89
Query: 372 VITLFQSLGNAFANSVWEE 390
            +   Q  GNA A + + +
Sbjct: 90  QLRCMQVGGNANATAFFRQ 108

>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 312 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPS 371
           LR V  N  C DCGA  P WAS+  GV +CI+CSG HR+LGVH+S +RS  LD   W   
Sbjct: 23  LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWF 81
Query: 372 VITLFQSLGNAFANSVWEE 390
            +   Q  GNA A+S + +
Sbjct: 82  QLRCMQVGGNASASSFFHQ 100

>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 365
           N++C DCG   PDW S+N G+ +CI CSGVHR+LGVHIS VRS+ +D+
Sbjct: 22  NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDI 69

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LHLA D+  + ++E+LL+YGA++NA D+ GLTPLH    RG     ++LL  G
Sbjct: 77  DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LHLA ++    +++LLL  GA+ NA DS G TPLH     G     KLLL++G
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           ADP A + +GKT L LA E+     EV+ +L
Sbjct: 94  ADPNAKDSDGKTPLHLAAENGH--KEVVKLL 122

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LHLA     + ++E+LL+YGA++NA D+ G+TPLH   +RG     ++LL  G
Sbjct: 44  DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
           N+ C +CGA  P W S+  G+ +C+ECSG HR LGVH+S VRS+T+D   W+   +   +
Sbjct: 37  NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 94
Query: 378 SLGNA 382
           + GNA
Sbjct: 95  AGGNA 99

>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 318 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQ 377
           N+ C +CGA  P W S+  G+ +C+ECSG HR LGVH+S VRS+T+D   W+   +   +
Sbjct: 38  NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMK 95
Query: 378 SLGNA 382
           + GNA
Sbjct: 96  AGGNA 100

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA     + ++E+LL+ GA++NA+DS G TPLH    RG     ++LL  G
Sbjct: 77  DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA D+  + ++E+LL++GA++NA D  G TPLH     G     ++LL  G
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +D  G T LHL  ++  + ++E+LL+Y A++NA+D  G TPLH    RG     ++LL  
Sbjct: 43  NDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 602 GADPRAVNREGKTSLELAVE 621
           GAD  A++ +G T L LA E
Sbjct: 103 GADVNAMDYQGYTPLHLAAE 122

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +D +G T LHLA D   + ++E+LL++GA++NA D+ G TPLH   L G     ++LL  
Sbjct: 43  NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 602 GADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           GAD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           DD  G T LHLA D   + ++E+LL+ GA++NA D  G TPLH     G     ++LL  
Sbjct: 76  DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 602 GADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           GAD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 63/103 (61%), Gaps = 2/103 (1%)
Query: 533 AGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 592
           A  ++   MDD  G T LHLA     + ++E+LL++GA++NA+DS G TPLH     G  
Sbjct: 35  ANGADVNAMDD-AGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL 93
Query: 593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
              ++LL  GAD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 94  EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LH A ++    +++LLL  GA+ NA DS G TPLH     G     KLLL++G
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           ADP   + +G+T L+LA E    + E++ +L    G
Sbjct: 127 ADPNTSDSDGRTPLDLAREH--GNEEIVKLLEKQGG 160

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA     + ++E+LL+YGA++NA D+ G TPLH     G     ++LL  G
Sbjct: 77  DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
           AD  A ++ GKT+ ++++++   D +E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           DL G T LHLA  +  + ++E+LL++GA++NA D+ G TPLH     G     ++LL  G
Sbjct: 77  DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
           AD  A ++ GKT+ ++++++   D +E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D+ G T LHLA     + ++E+LL++GA++NA D+ G TPLH   + G     ++LL  G
Sbjct: 77  DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA  +  + ++E+LL+ GA++NA+DS G+TPLH     G     ++LL  G
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 603 ADPRAVNREGKTSLELAVES 622
           AD  A +R G T L LA  S
Sbjct: 96  ADVNAYDRAGWTPLHLAALS 115

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D+ G T LHLA     + ++E+LL++GA++NA D+ G TPLH   + G     ++LL  G
Sbjct: 77  DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA     + ++E+LL+YGA++NA D+ G+TPL+     G     ++LL  G
Sbjct: 65  DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
           AD  A ++ GKT+ +++++    D +E+L
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA     + ++E+LL+ GA++NA D  G+TPLH    RG     ++LL  G
Sbjct: 77  DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++ +   D +E+L  L+
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LHLA     + ++E+LL+ GA++NA D  G TPLH     G     ++LL  G
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
           AD  A ++ GKT  +LA+++   D +EVL
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 533 AGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 592
           A  ++   MDD  G T LHLA     + ++E+LL++GA++NA+D  G TPLH     G  
Sbjct: 35  ANGADVNAMDD-AGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL 93
Query: 593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
              ++LL  GAD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 94  EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D+ G T LHLA  +  + ++E+LL+YGA++NA D  G TPLH     G     ++LL  G
Sbjct: 77  DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           AD  A ++ GKT+ ++++++   D
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNED 160

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LHLA     + ++E+LL+ GA++NA D  G TPLH     G     ++LL  G
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
           AD  A ++ GKT  +LA+     D +EVL
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 533 AGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA 592
           A  ++   MDD  G T LHLA     + ++E+LL++GA++NA D  G TPLH     G  
Sbjct: 35  ANGADVNAMDD-AGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL 93
Query: 593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
              ++LL  GAD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 94  EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +D  G T LHLA  +  + ++E+LL+ GA++NA D  G+TPL    L G     ++LL  
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           GAD  A + EG T L LA  + F   E++ +L
Sbjct: 103 GADVNANDMEGHTPLHLA--AMFGHLEIVEVL 132

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D+ G T LHLA     + ++E+LL+ GA++NA DS G+TPLH     G     ++LL  G
Sbjct: 77  DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G   LH AC      + ELL+++GA +N  D    TPLH    +GK    KLLL  G
Sbjct: 74  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 133
Query: 603 ADPRAVNREGKTSLELAVESN 623
           ADP   NR+G T L+L  + +
Sbjct: 134 ADPTKKNRDGNTPLDLVKDGD 154

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G   LH AC      + ELL+++GA +N  D    TPLH    +GK    KLLL  G
Sbjct: 76  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 135
Query: 603 ADPRAVNREGKTSLELAVESN 623
           ADP   NR+G T L+L  + +
Sbjct: 136 ADPTKKNRDGNTPLDLVKDGD 156

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G   LH AC      + ELL+++GA +N  D    TPLH    +GK    KLLL  G
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131
Query: 603 ADPRAVNREGKTSLELAVESN 623
           ADP   NR+G T L+L  + +
Sbjct: 132 ADPTKKNRDGNTPLDLVKDGD 152

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA  +  + +++LLL+ GA++NA D  G TPLH     G     KLLL  G
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 603 ADPRAVNREGKTSLELAVES 622
           AD  A ++ G+T L LA  +
Sbjct: 92  ADVNAKDKNGRTPLHLAARN 111

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LHLA     + ++E+LL+ GA++NA D  G TPLH     G     ++LL  G
Sbjct: 77  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVL 630
           AD  A ++ GKT+ ++++++   D +E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +D  G T LHLA  +  + ++E+LL+ GA++NA D+ G TPLH   + G     ++LL  
Sbjct: 43  EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
Query: 602 GADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           GAD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LH A ++    +++LL+  GA++NA DS G TPLH     G     KLL+++G
Sbjct: 67  DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           AD    + +G+T L+LA E    + EV+ +L    G
Sbjct: 127 ADVNTSDSDGRTPLDLAREH--GNEEVVKLLEKQGG 160

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA     + ++E+LL+ GA++NATD+ G TPLH     G     ++LL  G
Sbjct: 77  DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++++   D +E+L  L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LH A       +++LL+  GA++NA DS G TPLH     G     KLL+++G
Sbjct: 67  DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           AD    + +G+T L+LA E    + E++ +L    G
Sbjct: 127 ADVNTSDSDGRTPLDLAREH--GNEEIVKLLEKQGG 160

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +++G T LH AC   ++ M++ L++ GANIN  D+ G  PLH     G    A+ L+++G
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 603 ADPRAVNREGKTSLEL 618
           A   AVN EG T L++
Sbjct: 130 AHVGAVNSEGDTPLDI 145

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 45/77 (58%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
           G T LHLA  +  + +++LLL+ GA++NA D  G TPLH     G     KLLL  GAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 606 RAVNREGKTSLELAVES 622
            A ++ G+T L LA  +
Sbjct: 62  NAKDKNGRTPLHLAARN 78

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T L+LA     + ++E+LL+ GA++NA D+ G TPLH     G    A++LL  G
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILS 634
           AD  A ++ GKT+ ++++ +   D +E+L  L+
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 311 VLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEP 370
           ++R    N  C DC +  P W SL+  V +C+ CS  HR +GVHIS VRS  LD   + P
Sbjct: 29  IVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD--KFTP 86
Query: 371 SVITLFQSLGNAFANSVWEELL 392
             +      GN  A + ++++L
Sbjct: 87  IQLVRMDIGGNGRARNYFKQVL 108

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
           G T LH+A    +I +++ LLQ+ A++NA    G +PLH+   +G      LLL  GA P
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 606 RAVNREGKTSLELAVESNFAD-SEVLAILSD 635
             V+ +G T L +A    +   ++VL +++D
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G   LH AC      + ELLL++GA +NA D    TPLH    + +     LLL+ G
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 603 ADPRAVNREGKTSLELA 619
           ADP  VN  GK+++++A
Sbjct: 148 ADPTLVNCHGKSAVDMA 164

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           DL G T L  AC      ++ LLLQ+GA+INA++++G T LH  ++       +LLL  G
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           A  + +N+  +T+++ A E N    E+L ++
Sbjct: 209 ASVQVLNKRQRTAVDCA-EQNSKIMELLQVV 238

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +D  G T LHLA     + ++E+LL+ GA++NAT + G TPLH           ++LL  
Sbjct: 43  NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 602 GADPRAVNREGKTSLELAVESNFAD-SEVLAIL 633
           GAD  A ++ GKT+ ++++++   D +E+L  L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 41/84 (48%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           T  D +  T LH AC +    ++E LLQ G  +N  D  G +PLH     G+    K LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 600 TRGADPRAVNREGKTSLELAVESN 623
            +GA   AVN+ G T L  A   N
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKN 117

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 41/84 (48%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           T  D +  T LH AC +    ++E LLQ G  +N  D  G +PLH     G+    K LL
Sbjct: 35  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 600 TRGADPRAVNREGKTSLELAVESN 623
            +GA   AVN+ G T L  A   N
Sbjct: 95  GKGAQVNAVNQNGCTPLHYAASKN 118

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 41/84 (48%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           T  D +  T LH AC +    ++E LLQ G  +N  D  G +PLH     G+    K LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 600 TRGADPRAVNREGKTSLELAVESN 623
            +GA   AVN+ G T L  A   N
Sbjct: 94  GKGAQVNAVNQNGCTPLHYAASKN 117

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 40/84 (47%)
Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           T  D +  T LH AC +    ++E LLQ G  +N  D  G +PLH     G     K LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 600 TRGADPRAVNREGKTSLELAVESN 623
            +GA   AVN+ G T L  A   N
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKN 117

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 38/68 (55%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           LH A D   + +LE LL  GA+INA D   +TPL   +  G     KLLL++GAD     
Sbjct: 39  LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 98
Query: 610 REGKTSLE 617
            +G T+LE
Sbjct: 99  PDGLTALE 106

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 37/68 (54%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           LH A D   + +LE LL  GA+INA D   +TPL   +  G     KLLL++GAD     
Sbjct: 44  LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 610 REGKTSLE 617
            +G T+ E
Sbjct: 104 PDGLTAFE 111

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D+EG T L  A  +  +G+ E LL  G+N+N  D  G TPL   I+ G +  +  LL  G
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           A+    N EG+T   L V S +  SE++  L
Sbjct: 125 ANVNDRNLEGETP--LIVASKYGRSEIVKKL 153

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LH AC+   + ++ELLLQ+ A +N T  +  +PLH     G     KLLL+ G
Sbjct: 40  DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 603 ADPRAVNREG 612
           A   AVN  G
Sbjct: 100 ASRNAVNIFG 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
           +G T LH A  +     ++ LL  GA++NA    G TPLH     G A   KLLL +GAD
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 605 PRAVNREGKTSLELA 619
             A +++G T   LA
Sbjct: 68  VNARSKDGNTPEHLA 82

>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 28/156 (17%)
Query: 304 KSEKPIDVLRRVCG---NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRS 360
           + EK + +LR + G   N +C DC    P + ++ +G  VC  CSG  R L     +V+S
Sbjct: 8   QEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKS 66
Query: 361 LTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGK 420
           +++    +    I   Q  GN     +W  L   RS+                       
Sbjct: 67  ISMT--TFTQQEIEFLQKHGNEVCKQIWLGLFDDRSS---------------------AI 103
Query: 421 PSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSV 456
           P   D   VKE F+  KY +K +   P+  + + SV
Sbjct: 104 PDFRDPQKVKE-FLQEKYEKKRWYVPPEQAKVVASV 138

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
           + +L+  GA++NA D  G TPLH     G     ++LL  GAD  A ++ GKT+ +++++
Sbjct: 18  VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISID 77
Query: 622 SNFAD-SEVL 630
           +   D +E+L
Sbjct: 78  NGNEDLAEIL 87

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
           + +L+  GA++ A D  G TPLH     G     KLLL  GAD  A ++ GKT+ +++++
Sbjct: 40  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 622 SNFAD-SEVL 630
           +   D +E+L
Sbjct: 100 NGNEDLAEIL 109

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 562 LELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
           + +L+  GA++ A D  G TPLH     G     KLLL  GAD  A ++ GKT+ +++++
Sbjct: 22  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISID 81
Query: 622 SNFAD-SEVL 630
           +   D +E+L
Sbjct: 82  NGNEDLAEIL 91

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
           EG T LH A  +    +++ L+Q+G N+NA DS G TPLH           K L+  GA
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
           EG T LH A  +    +++ L+Q+G N+NA DS G TPLH           K L+  GA
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLT 600
           ++ +G T LH+A    D  M+ LL   GA++N  +   G TPLH  +    A   +LLL 
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
            GADP A    G+T L  A+      + +LA L  +HG
Sbjct: 214 AGADPTARMYGGRTPLGSAL---LRPNPILARLLRAHG 248

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLT 600
           ++ +G T LH+A    D  M+ LL   GA++N  +   G TPLH  +    A   +LLL 
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
            GADP A    G+T L  A+      + +LA L  +HG
Sbjct: 214 AGADPTARMYGGRTPLGSAL---LRPNPILARLLRAHG 248

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
           T LH+A       ++E+LL++GA++NA D   +T LH           +LL+  GAD   
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 608 VNREGKTSLELAVESNFAD-SEVL 630
            ++  KT+ ++++++   D +E+L
Sbjct: 129 QSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           L LAC      ++++LL  G ++N  D  G TPL   +        K+LL  GADP    
Sbjct: 89  LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 148
Query: 610 REGKTSLELAV 620
             G  S++LAV
Sbjct: 149 DSGYNSMDLAV 159

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           L LAC      ++++LL  G ++N  D  G TPL   +        K+LL  GADP    
Sbjct: 73  LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Query: 610 REGKTSLELAVESNF 624
             G  S++LAV   +
Sbjct: 133 DSGYNSMDLAVALGY 147

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           L LAC      ++++LL  G ++N  D  G TPL   +        K+LL  GADP    
Sbjct: 71  LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 130
Query: 610 REGKTSLELAVESNF 624
             G  S++LAV   +
Sbjct: 131 DSGYNSMDLAVALGY 145

>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 309 IDVLRRVCG---NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 365
           + +LR + G   N +C DC    P + ++ +G  VC  CSG  R L     +V+S+++  
Sbjct: 8   LKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISM-- 64
Query: 366 KVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPP 405
             +    I   Q  GN     +W  L   RS+   D   P
Sbjct: 65  TTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDP 104

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 34/77 (44%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G + LH AC      ++E+L+  GA IN  +    TPLH     G     + LL   
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 603 ADPRAVNREGKTSLELA 619
           AD  AVN  G   L  A
Sbjct: 91  ADINAVNEHGNVPLHYA 107

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
           EG T LH A   A+  +++ L+  GAN+N+ DS G TPLH        +    L+  GA 
Sbjct: 53  EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
Query: 605 PRAVN-REGKTSLE 617
             A    +G T+ E
Sbjct: 113 IFATTLSDGATAFE 126

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 34/77 (44%)
Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G + LH AC      ++E+L+  GA IN  +    TPLH     G     + LL   
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 603 ADPRAVNREGKTSLELA 619
           AD  AVN  G   L  A
Sbjct: 96  ADINAVNEHGNVPLHYA 112

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
           T L+LAC++     ++ LL+ GA++N    +  +PLH  +       A LL+  GAD +A
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQA 250
Query: 608 VNREGKTSLEL 618
            N EGK  +EL
Sbjct: 251 KNAEGKRPVEL 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	638
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-76
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	4e-50
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	5e-30
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	7e-48
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	4e-47
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	2e-44
2owa_A	138	Arfgap-like finger domain containing protein; zinc	2e-39
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	3e-38
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	6e-38
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	1e-36
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	2e-35
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-23
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	1e-21
1wi1_A	126	Calcium-dependent activator protein for secretion,	2e-19
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	3e-19
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	7e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-18
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-08
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	9e-18
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	1e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-14
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	5e-17
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	5e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	6e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-05
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-07
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	2e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	3e-16
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	3e-16
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	4e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-07
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	5e-16
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	6e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-11
2dkp_A	128	Pleckstrin homology domain-containing family A mem	1e-15
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	2e-15
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	2e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
2d9v_A	130	Pleckstrin homology domain-containing protein fami	3e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-08
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	1e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-06
2yry_A	122	Pleckstrin homology domain-containing family A mem	1e-14
2d9y_A	117	Pleckstrin homology domain-containing protein fami	1e-14
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	1e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-06
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	3e-14
2rfa_A	232	Transient receptor potential cation channel subfa	7e-14
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	5e-11
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	3e-14
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	5e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-11
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	9e-14
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	2e-13
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	2e-13
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	2e-13
3cxb_B	112	Pleckstrin homology domain-containing family M mem	3e-13
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	1e-12
2pnn_A	273	Transient receptor potential cation channel subfa	2e-12
2pnn_A	273	Transient receptor potential cation channel subfa	6e-08
2pnn_A	273	Transient receptor potential cation channel subfa	6e-08
2pnn_A	273	Transient receptor potential cation channel subfa	6e-07
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	7e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-07
2etb_A	256	Transient receptor potential cation channel subfam	2e-11
2etb_A	256	Transient receptor potential cation channel subfam	4e-11
2etb_A	256	Transient receptor potential cation channel subfam	1e-09
2etb_A	256	Transient receptor potential cation channel subfam	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-04
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	3e-11
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	4e-11
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	5e-11
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	6e-11
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	2e-10
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	4e-10
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	4e-10
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	4e-09
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	6e-09
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	7e-09
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	1e-08
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	2e-08
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	3e-08
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	6e-08
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	5e-07
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	8e-07
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	1e-06
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	4e-06
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	7e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	2e-05
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	5e-05
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	5e-05
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	1e-04
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	2e-04
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	5e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	9e-04

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score =  263 bits (673), Expect = 2e-82
 Identities = 107/387 (27%), Positives = 154/387 (39%), Gaps = 63/387 (16%)

Query: 250 PMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPI 309
           P+GSG    A  S++   S                          G  + R        +
Sbjct: 2   PLGSGSGHLAIGSAATLGS-------------------------GGMARGREPGGVGHVV 36

Query: 310 DVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWE 369
             ++ V GN +C DC  P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD   WE
Sbjct: 37  AQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWE 94

Query: 370 PSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISV 429
           P ++ L   LGN   N ++E  +++ +                     + KP  S S   
Sbjct: 95  PELVKLMCELGNVIINQIYEARVEAMA---------------------VKKPGPSCSRQE 133

Query: 430 KEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQ 489
           KE +IHAKY EK F+ K  + +       +         K ++     +         E 
Sbjct: 134 KEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSED 193

Query: 490 VSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTL 549
           +  +                        +G+     +       G          +  T 
Sbjct: 194 LGSLHPG---------------ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATP 238

Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           L  A  +  +   E LLQ GAN+N  DS G  PLH   + G    A L L RGAD  A +
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298

Query: 610 REGKTSLELAVESNFADSEVLAILSDS 636
            EG+  L +A+E+  AD   L  L+  
Sbjct: 299 SEGRDPLTIAMETANADIVTLLRLAKM 325

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score =  251 bits (643), Expect = 5e-79
 Identities = 86/354 (24%), Positives = 133/354 (37%), Gaps = 85/354 (24%)

Query: 280 SERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVL 339
              + +S    R S    +      ++  I  ++   GN +C DCGA +P W S NLGVL
Sbjct: 6   HHHHHSSGLVPRGSGHDGEPHD--LTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVL 63

Query: 340 VCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFH 399
            CI+CSGVHR LGV  S+++SLTLD  +  PS + L  ++GN   N V E          
Sbjct: 64  TCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLALNMGNTSFNEVME---------- 111

Query: 400 VDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQ 459
                  L     P+      PS    +  +  +I AKY E  F R+            +
Sbjct: 112 -----AQLPSHGGPK------PSAESDMGTRRDYIMAKYVEHRFARRCTPE------PQR 154

Query: 460 IWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTG 519
           +W  +   D  +V     N + D                                     
Sbjct: 155 LWTAICNRDLLSVLEAFANGQ-DFGQ---------------------------------- 179

Query: 520 NSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD---IGMLELLLQYGANINATD 576
                                        +LHLA   A+   + +++ ++Q G +++A  
Sbjct: 180 ----------------PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 223

Query: 577 SRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVL 630
           + G T LH   L  +    KLLL   A    VN  G+T+L++A + +  + E L
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score =  246 bits (630), Expect = 2e-77
 Identities = 90/330 (27%), Positives = 135/330 (40%), Gaps = 79/330 (23%)

Query: 304 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTL 363
            +++ I  ++R+ GND C DCGAP+P W S NLG+L CIECSG+HR LGVH S+++SLTL
Sbjct: 3   LTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTL 62

Query: 364 DVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSH 423
           D  V   S + L +++GNA  N + E  L S                          P+ 
Sbjct: 63  D--VLGTSELLLAKNIGNAGFNEIMECCLPSEDPVK---------------------PNP 99

Query: 424 SDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDV 483
              +  ++ +I AKY E+ + RK   +    +  H + E V+T D   + +   +  VD+
Sbjct: 100 GSDMIARKDYITAKYMERRYARKKHADT--AAKLHSLCEAVKTRDIFGLLQAYAD-GVDL 156

Query: 484 NAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDD 543
                                                 ++                    
Sbjct: 157 TEKI--------------------------------PLANGHE----------------- 167

Query: 544 LEGCTLLHLACDSAD---IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
               T LHLA  S D   + +++ L+Q   N++    +G T LH C L   A   KLLL 
Sbjct: 168 -PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVL 630
             A     N  G+T L++A        E L
Sbjct: 227 GKASIEIANESGETPLDIAKRLKHEHCEEL 256

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score =  251 bits (642), Expect = 2e-76
 Identities = 83/325 (25%), Positives = 125/325 (38%), Gaps = 83/325 (25%)

Query: 309 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW 368
           I  ++   GN +C DCGA +P W S NLGVL CI+CSGVHR LGV  S+++SLTLD  + 
Sbjct: 14  IAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LL 71

Query: 369 EPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSIS 428
            PS + L  ++GN   N V E  L S                         KPS    + 
Sbjct: 72  GPSELLLALNMGNTSFNEVMEAQLPSHG---------------------GPKPSAESDMG 110

Query: 429 VKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYE 488
            +  +I AKY E  F R+            ++W  +   D  +V                
Sbjct: 111 TRRDYIMAKYVEHRFARRCTPE------PQRLWTAICNRDLLSVL--------------- 149

Query: 489 QVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCT 548
                     A      +      + +                                 
Sbjct: 150 -------EAFANGQDFGQPLPGPDAQAP-----------------------------EEL 173

Query: 549 LLHLACDSADIG---MLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
           +LHLA   A+     +++ ++Q G +++A  + G T LH   L  +    KLLL   A  
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233

Query: 606 RAVNREGKTSLELAVESNFADSEVL 630
             VN  G+T+L++A + +  + E L
Sbjct: 234 GTVNEAGETALDIARKKHHKECEEL 258

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score =  177 bits (451), Expect = 4e-50
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 25/200 (12%)

Query: 288 YHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGV 347
           +H   S          +  + +  L +  GN RCADCGAP+PDWAS  LGV +C+ CSG+
Sbjct: 4   HHHHSSGRENLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGI 63

Query: 348 HRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSL 407
           HRN+   +SKV+S+ LD   WE + +    S GN  A + +E  + S             
Sbjct: 64  HRNIP-QVSKVKSVRLD--AWEEAQVEFMASHGNDAARARFESKVPS------------- 107

Query: 408 HKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGVRTN 467
                       +P+ SD   ++E++I AKY  + F+   K   Y              +
Sbjct: 108 ---------FYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQEPYSAGYREGFLWKRGRD 158

Query: 468 DKKAVYRHIVNFEVDVNAVY 487
           + + + R  V  E +    Y
Sbjct: 159 NGQFLSRKFVLTEREGALKY 178

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score =  121 bits (304), Expect = 5e-30
 Identities = 18/143 (12%), Positives = 44/143 (30%), Gaps = 32/143 (22%)

Query: 98  QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGS 157
             +++GY+ K        +++R+F +D R ++Y+     + + G                
Sbjct: 268 NYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGE--------------- 312

Query: 158 GLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAE 217
                ++ S   G               +                  I++P + +    E
Sbjct: 313 ----VFIGSKESGYT-------------VLHGFPPSTQGHHWPHGITIVTPDRKFLFACE 355

Query: 218 SALDQMDWIEKITGVIASLLSSQ 240
           +  DQ +W+      +   +  Q
Sbjct: 356 TESDQREWVAAFQKAVDRPMLPQ 378

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134

 Score =  163 bits (414), Expect = 7e-48
 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 27/157 (17%)

Query: 293 SRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLG 352
           S   +  +   + +  +  L     N  CADC +  P WAS N+GV +CI C+G+HRNLG
Sbjct: 2   SMTGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLG 61

Query: 353 VHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDK 412
           VHIS+V+S+ LD   W    I   Q +GN  AN ++E  L           P +      
Sbjct: 62  VHISRVKSVNLD--QWTQEQIQCMQEMGNGKANRLYEAYL-----------PETFR---- 104

Query: 413 PQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKD 449
                  +P    ++   E FI  KY +K ++ +  D
Sbjct: 105 -------RPQIDPAV---EGFIRDKYEKKKYMDRSLD 131

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  161 bits (409), Expect = 4e-47
 Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 27/151 (17%)

Query: 296 SQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHI 355
            + Q+   + +  +  L R   N  CADC A  P WAS N+GV +CI C+G+HRNLGVHI
Sbjct: 7   GKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHI 66

Query: 356 SKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQL 415
           S+V+S+ LD   W    I   Q +GN  A  ++E  L           P +         
Sbjct: 67  SRVKSVNLD--QWTAEQIQCMQDMGNTKARLLYEANL-----------PENFR------- 106

Query: 416 LLMGKPSHSDSISVKEKFIHAKYAEKLFVRK 446
               +P    ++   E FI  KY +K +  K
Sbjct: 107 ----RPQTDQAV---EFFIRDKYEKKKYYDK 130

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140

 Score =  154 bits (390), Expect = 2e-44
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 25/161 (15%)

Query: 296 SQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHI 355
           S +++   K  K +  +  +  N +C DC    P + ++ +G  VC  CSG  R L    
Sbjct: 3   SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP- 61

Query: 356 SKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQL 415
            +V+S+++    +    I   Q  GN     +W  L   RS                   
Sbjct: 62  HRVKSISMT--TFTQQEIEFLQKHGNEVCKQIWLGLFDDRS------------------- 100

Query: 416 LLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSV 456
                P   D   VKE F+  KY +K +   P+  + + SV
Sbjct: 101 --SAIPDFRDPQKVKE-FLQEKYEKKRWYVPPEQAKVVASV 138

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138

 Score =  140 bits (354), Expect = 2e-39
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 33/163 (20%)

Query: 280 SERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVL 339
           +  NL +A  + +   S + R     +    ++R    N  C DC +  P W SL+  V 
Sbjct: 3   NISNLINADVDEKGFVSDKLR-----DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVF 57

Query: 340 VCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFH 399
           +C+ CS  HR +GVHIS VRS  LD   + P  +      GN  A + ++++L       
Sbjct: 58  ICLNCSSDHRKMGVHISFVRSSDLD--KFTPIQLVRMDIGGNGRARNYFKQVLGV----- 110

Query: 400 VDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKL 442
            + +P +                              +Y + L
Sbjct: 111 -NFSPKTKEY--------------------ASSICGRQYKQIL 132

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score =  137 bits (346), Expect = 3e-38
 Identities = 41/161 (25%), Positives = 60/161 (37%), Gaps = 27/161 (16%)

Query: 284 LTSAYHERQSRGSQQQRSCVKSE---KPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLV 340
           + S++H          R  + S    K +  +R    N+ C +CGA  P W S+  G+ +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWI 60

Query: 341 CIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHV 400
           C+ECSG HR LGVH+S VRS+T+D   W+   +   ++ GNA      E           
Sbjct: 61  CLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNAKFREFLES--------QE 110

Query: 401 DLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEK 441
           D  P                       S        K    
Sbjct: 111 DYDPCW--------------SLQEKYNSRAAALFRDKVVAL 137

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score =  137 bits (346), Expect = 6e-38
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 4/158 (2%)

Query: 295 GSQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVH 354
           GS    + V+      + +    N++C DCG   PDW S+N G+ +CI CSGVHR+LGVH
Sbjct: 1   GSHMNAAAVEFIN--RLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVH 58

Query: 355 ISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQ 414
           IS VRS+ +D  ++    +      GN    +  E    S           +     K  
Sbjct: 59  ISIVRSIKMD--IFTDEQLKYIDKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKIL 116

Query: 415 LLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQY 452
             ++        + + E      Y     V +   NQY
Sbjct: 117 RSIVHNVDPPAPLPLDEGKSLINYGRNENVNENNKNQY 154

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144

 Score =  132 bits (334), Expect = 1e-36
 Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 288 YHERQSRG----SQQQRSCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIE 343
           +H   S G       + +  + +     LR V  N  C DCGA  P WAS+  GV +CI+
Sbjct: 3   HHHHHSSGLVPRGSAEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCID 62

Query: 344 CSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 390
           CSGVHR+LGVH+S +RS  LD   W    +   Q  GNA A + + +
Sbjct: 63  CSGVHRSLGVHLSFIRSTELDSN-WNWFQLRCMQVGGNANATAFFRQ 108

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149

 Score =  129 bits (325), Expect = 2e-35
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 304 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTL 363
                   LR V  N  C DCGA  P WAS+  GV +CI+CSG HR+LGVH+S +RS  L
Sbjct: 15  DILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTEL 74

Query: 364 DVKVWEPSVITLFQSLGNAFANSVWEE 390
           D   W    +   Q  GNA A+S + +
Sbjct: 75  DSN-WSWFQLRCMQVGGNASASSFFHQ 100

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  100 bits (250), Expect = 3e-23
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 10/132 (7%)

Query: 288 YHERQSRGSQQQRSCV----KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIE 343
           +H   S G +          ++ K +  +R    N+ C +CGA  P W S+  G+ +C+E
Sbjct: 3   HHHHHSSGRENLYFQGMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLE 62

Query: 344 CSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLT 403
           CSG HR LGVH+S VRS+T+D   W+   +   ++ GNA       E L+S+  +    +
Sbjct: 63  CSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNAKFR----EFLESQEDYDPCWS 116

Query: 404 PPSLHKSDKPQL 415
               + S    L
Sbjct: 117 LQEKYNSRAAAL 128

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 89.9 bits (223), Expect = 1e-21
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 44/142 (30%)

Query: 99  TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
           + ++GYL K+S  +R  W+RR   +   G+L       ++                    
Sbjct: 10  SEKKGYLLKKSDGIRKVWQRRKCSVK-NGILTISHATSNRQPA----------------- 51

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES 218
                                   +NLLT  +K +A+    +  F +IS  + Y  QAE 
Sbjct: 52  -----------------------KLNLLTCQVKPNAED---KKSFDLISHNRTYHFQAED 85

Query: 219 ALDQMDWIEKITGVIASLLSSQ 240
             D + WI  +T      L+  
Sbjct: 86  EQDYVAWISVLTNSKEEALTMA 107

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 83.4 bits (206), Expect = 2e-19
 Identities = 20/158 (12%), Positives = 37/158 (23%), Gaps = 33/158 (20%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
            + G       GYL     N+   WK+RFFVL       +                 ++ 
Sbjct: 1   GSSGSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFA-----------MCSYREKK 49

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN 211
           +       L                                       R  F  +     
Sbjct: 50  AEPQELLQLD----------------------GYTVDYTDPQPGLEGGRAFFNAVKEGDT 87

Query: 212 YTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTS 249
               ++   D++ W++ +            P +  P+S
Sbjct: 88  VIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGPSS 125

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 89.3 bits (220), Expect = 3e-19
 Identities = 42/248 (16%), Positives = 79/248 (31%), Gaps = 72/248 (29%)

Query: 1   MDAHLRYFKQGYE-LLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESR 59
           M A + +FK G E L  Q+E ++  + T  Q  R   + +   + + +++ +   D    
Sbjct: 204 MQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDP--- 260

Query: 60  WASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSN--LRGDWK 117
                                   + +         +  T + GYL+ R+    +   W 
Sbjct: 261 ----------------------LYVPDPDPTKFPVNRNLTRKAGYLNARNKTGLVSSTWD 298

Query: 118 RRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 177
           R+F+      ++                                                
Sbjct: 299 RQFYFTQGGNLMSQ-----------------------------------------ARGDV 317

Query: 178 AARHTVNLLTSTIKVDADQSDLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGVIAS 235
           A    +++   ++    D  D R+CF+I S    K+  LQAES  D  +WI  I  +   
Sbjct: 318 AGGLAMDIDNCSVMA-VDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQ 376

Query: 236 LLSSQAPE 243
           +  S+ PE
Sbjct: 377 IYLSENPE 384

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 81.9 bits (202), Expect = 7e-19
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 34/144 (23%)

Query: 98  QTIRQGYLSKRSSNLRGDWKRRFFVLDSRG--MLYYYRKQCSKSSGSGSQLSSQRNSSEL 155
           Q    G+L    +   G + RR+F+LD++   +L+Y     + + G+G+  S        
Sbjct: 14  QNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGS-------- 65

Query: 156 GSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQ 215
                                        +   +I     +    FCF I + ++ Y LQ
Sbjct: 66  ------------------------LQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQ 101

Query: 216 AESALDQMDWIEKITGVIASLLSS 239
           A    D  DW+E +     S  SS
Sbjct: 102 ANDQKDLKDWVEALNQASKSGPSS 125

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 82.4 bits (205), Expect = 1e-18
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G   LH AC      + ELL+++GA +N  D    TPLH    +GK    KLLL  G
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           ADP   NR+G T L+L  + +   +++  +L     
Sbjct: 132 ADPTKKNRDGNTPLDLVKDGD---TDIQDLLR-GDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.5 bits (187), Expect = 3e-16
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +    T LH A     + ++E LLQ+GA+++A D  GL PLH     G    A+LL+  G
Sbjct: 39  EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98

Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILSDSHG 638
           A     +    T L  A      +  ++L +    HG
Sbjct: 99  AVVNVADLWKFTPLHEAAAKGKYEICKLL-L---QHG 131

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.0 bits (170), Expect = 6e-14
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 545 EGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
           E    L  A  + D+  ++ L      N    + R  TPLH      +    + LL  GA
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66

Query: 604 DPRAVNREGKTSLELAVESNFAD-SEVLAILSDSHG 638
           D  A ++ G   L  A      + +E+L +    HG
Sbjct: 67  DVHAKDKGGLVPLHNACSYGHYEVAELL-V---KHG 98

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 21/85 (24%), Positives = 35/85 (41%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +   G T LHLA D  +  ++ LLL+ GA++N    +G +P      R      + L   
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

Query: 602 GADPRAVNREGKTSLELAVESNFAD 626
             +   +  E +       ES F +
Sbjct: 207 TLENLQMLPESEDEESYDTESEFTE 231

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 545 EGCTLLHLA----CDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           +G + LHLA      +  + ++  +    A +N  ++   TPLH  ++  +   A+ LL 
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
            G DP   +  G T L LA E        + +L+    
Sbjct: 67  AGCDPELRDFRGNTPLHLACEQG--CLASVGVLT-QSC 101

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.1 bits (183), Expect = 5e-15
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLTR 601
           +  G T LHLA     +G++ELL+  GA++NA +   G T LH  +         LLL  
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173

Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           GAD   V  +G +  +L        + +   L     
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRP--STRIQQQLG-QLT 207

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.7 bits (182), Expect = 6e-15
 Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +    T LHLA  +    + E LL  G +    D RG TPLH    +G      +L    
Sbjct: 42  NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101

Query: 603 ADPR------AVNREGKTSLELAVESNFAD 626
             P       A N  G T L LA    +  
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLG 131

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.4 bits (181), Expect = 7e-15
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGAN------INATDSRGLTPLHRCILRGKAMFAK 596
           D  G T LHLAC+   +  + +L Q          + AT+  G T LH   + G     +
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 597 LLLTRGADPRAV-NREGKTSLELAVESN 623
           LL++ GAD  A     G+T+L LAV+  
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQ 162

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 574 ATDSRGLTPLHRCILRGKAMFA----KLLLTRGADPRAVNREGKTSLELAVESN 623
                G + LH  I+  +        + +    A     N   +T L LAV +N
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 56

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 29/81 (35%), Positives = 49/81 (60%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           + +  T LH+A + A   ++E+L ++GA +NA DS G T LHR  L G     +LLL+ G
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303

Query: 603 ADPRAVNREGKTSLELAVESN 623
           +DP  ++ +G T+ ++  E+ 
Sbjct: 304 SDPSIISLQGFTAAQMGNEAV 324

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 543 DLEGCTLLHLACDSADIG---MLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
                T LH A  S       + ELLL+ GAN+N  +   +TPLH    R      ++L 
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 600 TRGADPRAVNREGKTSLELAVESN 623
             GA   A++  G+T+L  A  + 
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAG 291

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.8 bits (198), Expect = 3e-16
 Identities = 30/84 (35%), Positives = 42/84 (50%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D    T LHLA     + +++LLLQ+GA+++A D  GL PLH     G     +LLL  G
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A   A++    T L  A   N  +
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVE 138

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.1 bits (191), Expect = 2e-15
 Identities = 23/82 (28%), Positives = 34/82 (41%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
            + +   LL  A    +  ++ LL     N +A+D R  TPLH      +    +LLL  
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80

Query: 602 GADPRAVNREGKTSLELAVESN 623
           GAD  A ++ G   L  A    
Sbjct: 81  GADVHAKDKGGLVPLHNACSYG 102

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.7 bits (164), Expect = 5e-12
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LH A  +  +    LLL YG++ +    +G T              + +L+  
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAVQQILSES 331

Query: 603 ADPRAVNREGKT 614
              R  + + + 
Sbjct: 332 TPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.8 bits (159), Expect = 2e-11
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF---AKLLL 599
           + +G +LL  A + AD+  ++  L              T LH  +          A+LLL
Sbjct: 176 EFKGHSLLQAARE-ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL 234

Query: 600 TRGADPRAVNREGKTSLELAVESNFAD 626
            +GA+    N++  T L +A E    D
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHND 261

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.1 bits (152), Expect = 1e-10
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 23/118 (19%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH-----------RCILRGK 591
           DL   T LH A     + +  LLL +GA+    +  G + +                +G 
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180

Query: 592 AMF----------AKLLLTRGADPRAVNREGKTSLELAVESNFADS-EVLAILSDSHG 638
           ++            K  L          +  +T+L  AV S      +V  +L    G
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL-RKG 237

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 3/63 (4%)

Query: 563 ELLLQYGANINATDSRGLTPLHRCILRG--KAMFAKLLLTRGADPRAVNREGKTSLELAV 620
             L    A    T       L      G  + +   LL     +  A +    T L LA 
Sbjct: 8   LDLADPSAKAVLTGEYKKDELLEAARSGNEEKL-MALLTPLNVNCHASDGRKSTPLHLAA 66

Query: 621 ESN 623
             N
Sbjct: 67  GYN 69

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 81.3 bits (202), Expect = 4e-18
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +    T LHLA       +++ LLQY A+INA +  G  PLH     G+   A+ L+  G
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           A     N+ G+  ++ A           A      G
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRERAE---KMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.0 bits (196), Expect = 3e-17
 Identities = 27/81 (33%), Positives = 34/81 (41%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G + LH AC      ++E+L+  GA IN  +    TPLH     G     + LL   
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95

Query: 603 ADPRAVNREGKTSLELAVESN 623
           AD  AVN  G   L  A    
Sbjct: 96  ADINAVNEHGNVPLHYACFWG 116

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGAN-INATDSRGLTPLHRCILRGKAMFAKLLLTRGA 603
           E    +   C   +   + L L    N +N  D  G +PLH     G++   ++L+ RGA
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 604 DPRAVNREGKTSLELAVESN 623
               +NR   T L LA    
Sbjct: 64  RINVMNRGDDTPLHLAASHG 83

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 66.3 bits (163), Expect = 7e-13
 Identities = 12/67 (17%), Positives = 25/67 (37%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +  G   LH AC      + E L+  GA ++  +  G  P+ +     + +  +     G
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

Query: 603 ADPRAVN 609
            +   + 
Sbjct: 162 QNLNRIP 168

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 79.8 bits (198), Expect = 6e-18
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LH AC+   + ++ELLLQ+ A +N T  +  +PLH     G     KLLL+ G
Sbjct: 40  DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           A   AVN  G   ++   + +     +L +  + + 
Sbjct: 100 ASRNAVNIFGLRPVDYTDDESM--KSLLLLP-EKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.1 bits (191), Expect = 5e-17
 Identities = 27/81 (33%), Positives = 37/81 (45%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +  G TLLH+A    DI  +E LLQ G++ N  D  G TPLH     G     +LLL   
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A       +  + L  A ++ 
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNG 87

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             +  + LH A  +  + +++LLL YGA+ NA +  GL P+             L     
Sbjct: 73  GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

Query: 603 AD 604
           + 
Sbjct: 133 SS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.5 bits (122), Expect = 8e-08
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
           G +   T+ RG T LH   ++G     + LL  G+DP   +  G T L  A       
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK 57

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 79.0 bits (195), Expect = 9e-18
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 41/137 (29%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
            ++GYL+K+   ++  WK R+F L  R  L Y++ Q                        
Sbjct: 19  TKEGYLTKQGGLVKT-WKTRWFTLH-RNELKYFKDQ------------------------ 52

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
                           +      ++L   +        +   CF ++ P + + L A++ 
Sbjct: 53  -------------MSPE--PIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKTG 97

Query: 220 LDQMDWIEKITGVIASL 236
           ++  +WI+ +   ++ +
Sbjct: 98  VEADEWIKILRWKLSQI 114

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 80.0 bits (196), Expect = 1e-17
 Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 16/141 (11%)

Query: 100 IRQGYLSKRSSNLR----GDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSEL 155
           I +    KRS   +     ++K+  F+L    + YY                  R  S+ 
Sbjct: 4   ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYE-----------YDFERGRRGSKK 52

Query: 156 GSGLLSRWLSSHY-HGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTL 214
           GS  + +           +             +S ++  +      + F+++       +
Sbjct: 53  GSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYV 112

Query: 215 QAESALDQMDWIEKITGVIAS 235
            + +   +  WI ++  VI  
Sbjct: 113 FSPTEELRKRWIHQLKNVIRY 133

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 25/82 (30%), Positives = 38/82 (46%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +   G T LHLA ++    +LELLL+ GA+  A    G TPL   +LR   + A+LL   
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 602 GADPRAVNREGKTSLELAVESN 623
           GA       +  +    +   +
Sbjct: 248 GAPEPEDGGDKLSPCSSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTR 601
           + +G T LH+A    D  M+ LL   GA++N  +   G TPLH  +    A   +LLL  
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 602 GADPRAVNREGKTSLELAVESNFAD 626
           GADP A    G+T L  A+      
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPI 239

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.3 bits (186), Expect = 4e-15
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGAN---INATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +G T LHLA        L+ LL + A    ++  +  G T LH   + G+A   + L   
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 602 GADPRAVNREGKTSLELAVESNFAD 626
           GA      R G T+L LA       
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHT 92

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 17/88 (19%), Positives = 28/88 (31%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +  G T LHLA    +   +E L   GA +   +  G T LH          A +LL   
Sbjct: 42  NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVL 630
                   +   +       + + +   
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAA 129

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.0 bits (162), Expect = 5e-12
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
                +  + +         +   + A +  G TPLH  ++   A   +LL   GAD   
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 608 V-NREGKTSLELAVESNFAD 626
                G+T L LAVE+  A 
Sbjct: 187 PEPTCGRTPLHLAVEAQAAS 206

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 18/95 (18%), Positives = 24/95 (25%), Gaps = 14/95 (14%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTP--------------LHRCIL 588
           +  G T LHLAC         +LLQ   +     S                         
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

Query: 589 RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
             +               A N +G T L +AV   
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 572 INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN---REGKTSLELAVESNFAD 626
                  G T LH  ++     F   LL   A    ++     G+T+L LA     A 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 84.1 bits (209), Expect = 2e-17
 Identities = 28/84 (33%), Positives = 43/84 (51%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A    +I +++ LLQ+ A++NA    G +PLH+   +G      LLL  G
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A P  V+ +G T L +A    +  
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLGYIS 391

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.5 bits (205), Expect = 6e-17
 Identities = 25/81 (30%), Positives = 37/81 (45%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A     + +++ LLQ GA+ N ++ +  TPLH     G    AK LL   
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A   A  ++ +T L  A    
Sbjct: 71  AKVNAKAKDDQTPLHCAARIG 91

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.2 bits (199), Expect = 3e-16
 Identities = 28/84 (33%), Positives = 39/84 (46%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A     + +   LLQYG + NA   +G+TPLH     G A    LLL++ 
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A+    N+ G T L L  +     
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVP 292

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.2 bits (199), Expect = 4e-16
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A    ++ +++LLL  G + ++    G TPLH    + +   A+ LL  G
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
               A + +G T L LA +   A+
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAE 259

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.8 bits (198), Expect = 4e-16
 Identities = 29/81 (35%), Positives = 38/81 (46%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A     +  +  LL+  A+      +G TPLH     GK   A+LLL R 
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A P A  + G T L +AV  N
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHN 190

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.8 bits (198), Expect = 4e-16
 Identities = 29/84 (34%), Positives = 36/84 (42%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
            ++G T LHLA       M+ LLL   AN N  +  GLTPLH     G    A +L+  G
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
               A  R G T L +A       
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIK 325

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.8 bits (198), Expect = 4e-16
 Identities = 25/84 (29%), Positives = 36/84 (42%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +++  T LH+A  +    + + LLQ  A +NA      TPLH     G     KLLL   
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A+P      G T L +A      +
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVE 127

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.5 bits (197), Expect = 6e-16
 Identities = 25/84 (29%), Positives = 38/84 (45%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +  G T LHL      + + ++L+++G  ++AT   G TPLH     G     K LL   
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           AD  A  + G + L  A +    D
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTD 358

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 3e-15
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             +  T LH A       M++LLL+  AN N   + G TPLH     G       LL + 
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A    + ++G T L +A +     
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVR 160

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 3e-12
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR- 601
              G + LH A       ++ LLL+ GA+ N   S G TPL      G      +L    
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 400

Query: 602 --GADPRAVNREGKTSLELA 619
              +     ++   +  E  
Sbjct: 401 DETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.4 bits (145), Expect = 2e-09
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
           G +       GLTPLH     G     K LL RGA P   N + +T L +A  +   +
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 78.2 bits (194), Expect = 2e-17
 Identities = 22/81 (27%), Positives = 42/81 (51%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
                T LH+A       ++E+LL++GA++NA D   +T LH           +LL+  G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 603 ADPRAVNREGKTSLELAVESN 623
           AD    ++  KT+ ++++++ 
Sbjct: 124 ADVHTQSKFCKTAFDISIDNG 144

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 77.0 bits (191), Expect = 7e-17
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G + LHLA         E+LL+ G + +A      TPLH     G A   ++LL  G
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90

Query: 603 ADPRAVNREGKTSLELAVESNFADS-EVLAILSDSHG 638
           AD  A +    T+L  A E N  +  E+L I    +G
Sbjct: 91  ADVNAKDMLKMTALHWATEHNHQEVVELL-I---KYG 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.9 bits (162), Expect = 5e-13
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
           +    L  A  +     + +L+  GA     D  G +PLH     G     ++LL  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 605 PRAVNREGKTSLELAVESNFAD-SEVLAILSDSHG 638
             A  +  +T L +A     A+  EVL +    HG
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVL-L---KHG 90

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 81.0 bits (201), Expect = 3e-17
 Identities = 28/81 (34%), Positives = 36/81 (44%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             +G T L LA   A  GMLE L+   A++NA D  G + LH          A +LL  G
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A+    N   +T L LA    
Sbjct: 181 ANKDMQNNREETPLFLAAREG 201

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 76.7 bits (190), Expect = 7e-16
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G + LH A    ++    +LL+ GAN +  ++R  TPL      G    AK+LL   
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           A+    +   +   ++A E      +++ +L   H 
Sbjct: 214 ANRDITDHMDRLPRDIAQERMH--HDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.7 bits (177), Expect = 4e-14
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA   +     + LL+  A+ N  D+ G TPLH  +        ++L+   
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113

Query: 603 A-DPRAVNREGKTSLELAVESN 623
           A D  A   +G T L LA    
Sbjct: 114 ATDLDARMHDGTTPLILAARLA 135

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.5 bits (166), Expect = 9e-13
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 543 DLEGCTLLHLACDSAD-------------IGMLELLLQYGANI-NATDSRGLTPLHRCIL 588
             +G T L +A  S                 ++   +  GA++ N TD  G T LH    
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 589 RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
             ++  AK LL   AD    +  G+T L  AV ++
Sbjct: 67  YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.3 bits (150), Expect = 1e-10
 Identities = 14/63 (22%), Positives = 20/63 (31%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +    T L LA         ++LL + AN + TD     P      R      +LL    
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 603 ADP 605
              
Sbjct: 247 HHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 14/70 (20%)

Query: 571 NINATDSRGLTPLHRCILRGKAMF-------------AKLLLTRGADPRAV-NREGKTSL 616
           ++N     G TPL      G  +                  + +GA      +R G+T+L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 617 ELAVESNFAD 626
            LA   + +D
Sbjct: 62  HLAARYSRSD 71

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.1 bits (191), Expect = 3e-17
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G   LH A D   + +LE LL  GA+INA D   +TPL   +  G     KLLL++G
Sbjct: 37  LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAIL 633
           AD      +G T+ E        +  + A+L
Sbjct: 97  ADKTVKGPDGLTAFEAT-----DNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
                  A  + D+  ++  +  G ++N T   G  PLH     G+    + LL +GAD 
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 606 RAVNREGKTSLELAVESN 623
            A ++   T L  AV   
Sbjct: 67  NAPDKHHITPLLSAVYEG 84

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 542 DDLEGCTLLHLACDSAD----IGMLELLLQYGANINATDSRGLTPLHRCILRGK------ 591
           + +    +L+    + +      +   L+  GA+I +    G T        G       
Sbjct: 34  ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT 93

Query: 592 AMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL 633
               K+ L +GAD  A+ +  K  +   + + F D   +  L
Sbjct: 94  TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.6 bits (194), Expect = 4e-17
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 13/97 (13%)

Query: 543 DLEGCTLLHLACDS------ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK 596
             EG TL                 + ++ L+ GA+I A        + + I        +
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 597 -------LLLTRGADPRAVNREGKTSLELAVESNFAD 626
                  +    G      ++ G T+LE         
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI 168

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 7/74 (9%)

Query: 543 DLEGCTLLHLACDSADIGMLE-------LLLQYGANINATDSRGLTPLHRCILRGKAMFA 595
                 ++     +  +   E       +  Q G  +   D  GLT L       K +  
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 596 KLLLTRGADPRAVN 609
           K++           
Sbjct: 171 KMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 3/88 (3%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR---GLTPLHRCILRGKAMFAKLL 598
           + +     +  A           L + G     +  +       L       +   +  L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 599 LTRGADPRAVNREGKTSLELAVESNFAD 626
           + +GAD ++  +EG T      +    D
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGND 89

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDS 577
           D  G T L           L+++  Y    N  ++
Sbjct: 151 DKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 81.8 bits (203), Expect = 3e-17
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A       +L+LL+Q   ++N  D  G TPLH     GK    ++L+   
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
            D  AVN+ G+T+ ++A E        L  L     
Sbjct: 256 CDMEAVNKVGQTAFDVADEDI---LGYLEELQKKQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +++G T LH AC   ++ M++ L++ GANIN  D+ G  PLH     G    A+ L+++G
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           A   AVN EG T L++A E      E+L    +  G
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEA--MEELLQNEVNRQG 163

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 75.2 bits (186), Expect = 5e-15
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             +G   L  AC S D   +  LL+ GA+IN  +  GLT LH+  +       K L+  G
Sbjct: 38  FDDGAVFLA-ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A+    + EG   L  A    + D
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLD 120

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR- 601
           D EG   LH A     + + E L+  GA++ A +S G TPL            +  + R 
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

Query: 602 GADPRAVNREGKTSLELAV 620
           G D  A  +E +  +    
Sbjct: 163 GVDIEAARKEEERIMLRDA 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 18/84 (21%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +      L         LE  +            G          G       LL RG
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERG 63

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           AD    N +G T+L  A   +  D
Sbjct: 64  ADINYANVDGLTALHQACIDDNVD 87

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 3/91 (3%)

Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
                          + L     N       G T LH    +G     KLL+    D   
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227

Query: 608 VNREGKTSLELAVESNFADSEVLAILSDSHG 638
            + +G T L  A        E   IL   + 
Sbjct: 228 KDYDGWTPLHAAAHWG--KEEACRILV-ENL 255

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.7 bits (138), Expect = 6e-09
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T LH A          +L++   ++ A +  G T              +L   + 
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

Query: 603 ADPRAVNREGKT 614
                  RE K+
Sbjct: 289 LLHSE-KREKKS 299

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.8 bits (198), Expect = 4e-17
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G + LH A    ++    +LL+ GAN +  ++R  TPL      G    AK+LL   
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           A+    +   +   ++A E      +++ +L D + 
Sbjct: 182 ANRDITDHMDRLPRDIAQERMH--HDIVRLL-DEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.4 bits (197), Expect = 5e-17
 Identities = 28/81 (34%), Positives = 36/81 (44%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             +G T L LA   A  GMLE L+   A++NA D  G + LH          A +LL  G
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A+    N   +T L LA    
Sbjct: 149 ANKDMQNNREETPLFLAAREG 169

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 73.2 bits (181), Expect = 8e-15
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA   +     + LL+  A+ N  D+ G TPLH  +        ++L+   
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81

Query: 603 A-DPRAVNREGKTSLELAVESN 623
           A D  A   +G T L LA    
Sbjct: 82  ATDLDARMHDGTTPLILAARLA 103

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.4 bits (153), Expect = 3e-11
 Identities = 14/62 (22%), Positives = 20/62 (32%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +    T L LA         ++LL + AN + TD     P      R      +LL    
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

Query: 603 AD 604
             
Sbjct: 215 LV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.7 bits (151), Expect = 5e-11
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 561 MLELLLQYGANI-NATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
           ++   +  GA++ N TD  G T LH      ++  AK LL   AD    +  G+T L  A
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65

Query: 620 VESN 623
           V ++
Sbjct: 66  VSAD 69

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.0 bits (191), Expect = 5e-17
 Identities = 30/81 (37%), Positives = 49/81 (60%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T L+LA     + ++E+LL+ GA++NA D+ G TPLH     G    A++LL  G
Sbjct: 44  DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

Query: 603 ADPRAVNREGKTSLELAVESN 623
           AD  A ++ GKT+ ++++ + 
Sbjct: 104 ADVNAQDKFGKTAFDISIGNG 124

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
               L  A  +     + +L+  GA++NA D  GLTPL+     G     ++LL  GAD 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

Query: 606 RAVNREGKTSLELAVESNFAD-SEVLAILSDSHG 638
            AV+  G T L LA      + +EVL +    HG
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEIAEVL-L---KHG 103

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 34/149 (22%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLD-SRGMLYYYRKQCSKSSGSGSQLSSQR 150
            + G      +G L K+ + ++  WK R+FVLD ++  L YY                + 
Sbjct: 1   GSSGSSGRSYEGILYKKGAFMKP-WKARWFVLDKTKHQLRYYD--------------HRM 45

Query: 151 NSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK 210
           ++   G   L+                     V   T TI       D +  F + +  +
Sbjct: 46  DTECKGVIDLAE-----------------VEAVAPGTPTIGAP-KTVDEKAFFDVKTTRR 87

Query: 211 NYTLQAESALDQMDWIEKITGVIASLLSS 239
            Y   A+       W+++I   ++S  SS
Sbjct: 88  VYNFCAQDVPSAQQWVDRIQSCLSSGPSS 116

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 46/158 (29%)

Query: 93  AKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNS 152
           + G    ++ G+L K S   +  +++R+   D   + YY  ++   S G           
Sbjct: 2   SSGSSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKG----------- 50

Query: 153 SELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLT-STIKVDADQSDLRFCFRIISPTKN 211
                                         + L   ST++V  D       F +++  + 
Sbjct: 51  -----------------------------IIPLSAISTVRVQGD-----NKFEVVTTQRT 76

Query: 212 YTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTS 249
           +  + E   ++ DWI  +   + S   +   +   P+S
Sbjct: 77  FVFRVEKEEERNDWISILLNALKSQSLTSQSQASGPSS 114

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 79.8 bits (198), Expect = 6e-17
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D   G + L  A ++  + M++LLLQ+GAN+NA    G + LH    RG     + L+  
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205

Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           GAD    N    T L +A        ++L   + +  
Sbjct: 206 GADSSLKNCHNDTPLMVARSRRVI--DILRGKA-TRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.6 bits (182), Expect = 6e-15
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQY----GANINATDSRGLTPLHRCILRGKAMFAKLL 598
           D +G T LH+A    ++  +  L+      G  ++  ++   TPLH  ++       +LL
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 599 LTRGADPRAVNREGKTSLELAVESN 623
           +T GA P A++R G+T+  LA E  
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHR 90

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 71.3 bits (176), Expect = 4e-14
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +    T LHLA  +    ++ LL+  GA+  A D  G T  H           + LL   
Sbjct: 43  NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102

Query: 603 ADPR----AVNREGKTSLELAVESN 623
           A       A N +G T+L +AV + 
Sbjct: 103 APGTLDLEARNYDGLTALHVAVNTE 127

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 9e-14
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGA----NINATDSRGLTPLHRCILRGKAMFAKLL 598
           D  G T  HLAC+      L  LL   A    ++ A +  GLT LH  +        +LL
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 599 LTRGADPRAVNRE-GKTSLELAVESN 623
           L RGAD  AV+ + G++ L  AVE+N
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENN 161

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 63.2 bits (155), Expect = 2e-11
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G + LH A     + ++  L++ GA+ +  +    TPL     R      +   TR 
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

Query: 603 A 603
           A
Sbjct: 240 A 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 572 INATDSRGLTPLHRCILRGKAMFAKLLL----TRGADPRAVNREGKTSLELAVESN 623
               D  G TPLH  +++G       L+      G +    N   +T L LAV + 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT 57

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 76.3 bits (188), Expect = 6e-17
 Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 47/154 (30%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
             +G+L K+ S+    WKRR+FVL     L+YY+                          
Sbjct: 12  HIRGWLHKQDSSGLRLWKRRWFVLS-GHCLFYYKDS------------------------ 46

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDL--RFCFRIISP-TKNYTLQA 216
                         +E      +V L +  I+ D   +    RF F    P  + Y L A
Sbjct: 47  -------------REES--VLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAA 91

Query: 217 ESALDQMDWIEKITGVIASLLSSQAPERCLPTSP 250
           ++  D   W+  +         ++  +   P SP
Sbjct: 92  DTLEDLRGWLRALGRAS----RAEGDDYGQPRSP 121

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.9 bits (193), Expect = 8e-17
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLTR 601
           D  G T L           + LL + GA+++  D R GLT LH      +    + L+  
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132

Query: 602 GADPRAVNREGKTSLELAVESN 623
           GAD    +  G T+LELA E  
Sbjct: 133 GADIEVEDERGLTALELAREIL 154

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.4 bits (171), Expect = 7e-14
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
           E  T    A   AD   L  LL+   +++A D  G T L      G     +LL   GAD
Sbjct: 43  EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101

Query: 605 PRAVNRE-GKTSLELAVESN 623
               +   G T+L +A    
Sbjct: 102 LDHRDMRGGLTALHMAAGYV 121

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 19/63 (30%), Positives = 26/63 (41%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D   G T LH+A       ++E L++ GA+I   D RGLT L       K       +  
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165

Query: 602 GAD 604
           G  
Sbjct: 166 GRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 61.7 bits (151), Expect = 3e-11
 Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 4/79 (5%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
           EG     +                 A++ +      TP      +        LL    D
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRD 68

Query: 605 PRAVNREGKTSLELAVESN 623
             AV+  G+T+L       
Sbjct: 69  VDAVDENGRTALLFVAGLG 87

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 5/65 (7%)

Query: 569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSE 628
               + T   G          G +          AD   V  E +T    A      D +
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKA--DEQ 58

Query: 629 VLAIL 633
            L+ L
Sbjct: 59  ALSQL 63

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 75.3 bits (184), Expect = 2e-16
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 19/140 (13%)

Query: 100 IRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
           I+Q +L KRS N L  +WK+++  L S G L Y+         +  +      ++     
Sbjct: 5   IKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTV---- 60

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAE 217
                            K   R       S         +  F F I+S T + +  +A 
Sbjct: 61  -------------KVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAA 107

Query: 218 SALDQMDWIEKITGVIASLL 237
           S  ++  W++ I   I + L
Sbjct: 108 SFEERDAWVQAIESQILASL 127

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D  G T L+ AC      ++E+L  Q    +N  +  G T LH    +G A   +LLL +
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

Query: 602 GADPRAVNREGKTSLELAVESNFAD 626
           GA     N E K + ++A  +  A 
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACAS 187

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 16/77 (20%), Positives = 23/77 (29%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +  G T LH A       +++LLL  GA  +  +               A   K      
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196

Query: 603 ADPRAVNREGKTSLELA 619
           A     N E     E +
Sbjct: 197 AVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT-R 601
                  LH A    ++  L   L     +N  D  G T L+     G     ++L T  
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP 129

Query: 602 GADPRAVNREGKTSLELAVESNFAD 626
             +    N+ G T+L  A    +AD
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYAD 154

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 12/81 (14%), Positives = 19/81 (23%), Gaps = 5/81 (6%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
                T                 L     +         PLH    RG   + +  L   
Sbjct: 42  TDMSDTNWWKGTSKG-----RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96

Query: 603 ADPRAVNREGKTSLELAVESN 623
                +++ G T+L  A    
Sbjct: 97  VGVNGLDKAGSTALYWACHGG 117

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 9/78 (11%), Positives = 18/78 (23%), Gaps = 5/78 (6%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
           G   +  A  + +    + L     +I        T   +   +G     +  L      
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYV 66

Query: 606 RAVNREGKTSLELAVESN 623
                     L  A +  
Sbjct: 67  AEQAESIDNPLHEAAKRG 84

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.1 bits (191), Expect = 2e-16
 Identities = 21/83 (25%), Positives = 30/83 (36%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           M   E   LL  A       + E+L      ++  D+ G TPL+  +       AK L+ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 601 RGADPRAVNREGKTSLELAVESN 623
           RGAD    N    +    A    
Sbjct: 61  RGADINLQNSISDSPYLYAGAQG 83

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.3 bits (176), Expect = 2e-14
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D EG T L++A  + DI + + L+  GA+IN  +S   +P      +G+      +L   
Sbjct: 36  DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95

Query: 603 A-DPRAVNREGKTSLELAVESN 623
             D    NR G  +L  A E  
Sbjct: 96  TPDLNKHNRYGGNALIPAAEKG 117

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.1 bits (165), Expect = 5e-13
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGKAMF-----AK 596
           +  G   L  A +   I  ++LLL+ G  +I+  +  G T L   +   +         K
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

Query: 597 LLLTRGADPRAVNREGKTSLELAVESNFAD 626
           LL+  GAD    +  G+T+++ A +  + +
Sbjct: 163 LLMENGADQSIKDNSGRTAMDYANQKGYTE 192

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGA-NINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +    +    A       +L  +L++   ++N  +  G   L     +G     KLLL  
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 602 G-ADPRAVNREGKTSLELAVESNFADSEVLAI 632
           G  D    N  G T+L  AV     +     I
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 543 DLEGCTLLHLACDSADIG-----MLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKL 597
           +  G T L  A    +       +++LL++ GA+ +  D+ G T +     +G    +K+
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196

Query: 598 LL 599
           L 
Sbjct: 197 LA 198

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 37/145 (25%)

Query: 95  GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSE 154
           G +  ++ G+L ++S+ L+  WK+ +F L S G L YY  Q  ++               
Sbjct: 1   GSMAFVKSGWLLRQSTILKR-WKKNWFDLWSDGHLIYYDDQTRQN--------------I 45

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR---FCFRIISPT-K 210
                +                      +N+ T     D    D +      +I+    K
Sbjct: 46  EDKVHMPM------------------DCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGK 87

Query: 211 NYTLQAESALDQMDWIEKITGVIAS 235
             +L AES  D + W   +     +
Sbjct: 88  TISLCAESTDDCLAWKFTLQDSRTN 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 74.0 bits (183), Expect = 3e-16
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
           +G T LH A  +     ++ LL  GA++NA    G TPLH     G A   KLLL +GAD
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67

Query: 605 PRAVNREGKTSLELAVESN 623
             A +++G T   LA ++ 
Sbjct: 68  VNARSKDGNTPEHLAKKNG 86

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.3 bits (171), Expect = 1e-14
 Identities = 25/74 (33%), Positives = 34/74 (45%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             +G T LHLA  +    +++LLL  GA++NA    G TP H     G     KLL  +G
Sbjct: 39  SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98

Query: 603 ADPRAVNREGKTSL 616
           AD  A +       
Sbjct: 99  ADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.1 bits (116), Expect = 4e-07
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH 584
             +G T  HLA  +    +++LL   GA++NA         H
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 77.6 bits (192), Expect = 3e-16
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLTR 601
           D  G T L           + LL + GA+++  D R GLT LH      +    + L+  
Sbjct: 74  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133

Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           GAD    +  G T+LELA E      +   +     G
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPM---QFG 167

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
           E  T    A   AD   L  LL+   +++A D  G T L      G     +LL   GAD
Sbjct: 44  EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102

Query: 605 PRAVNRE-GKTSLELAVESNFAD-SEVLAILSDSHG 638
               +   G T+L +A      +  E L       G
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALV----ELG 134

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D   G T LH+A       ++E L++ GA+I   D RGLT L       K       +  
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 166

Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAIL-SDSHG 638
           G     +  E   ++       F  +EV  I+     G
Sbjct: 167 GRR---IGLEKVINVLEG--QVFEYAEVDEIVEKRGKG 199

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 4/79 (5%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
           EG     +                 A++ +      TP      +        LL    D
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRD 69

Query: 605 PRAVNREGKTSLELAVESN 623
             AV+  G+T+L       
Sbjct: 70  VDAVDENGRTALLFVAGLG 88

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 24/101 (23%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDS----------------------RGL 580
           D  G T L LA +          +Q+G  I                           +G 
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200

Query: 581 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE 621
              +    +       +     A+   V ++ +  LE AV 
Sbjct: 201 DVEYLVRWKDGGDCEWVKGVHVAED--VAKDYEDGLEYAVA 239

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 74.0 bits (182), Expect = 3e-16
 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 42/153 (27%)

Query: 93  AKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNS 152
           + G    ++QGY+ K+    +  W  R+FVL    ++ YY  +                 
Sbjct: 2   SSGSSGVLKQGYMMKKGHRRKN-WTERWFVLK-PNIISYYVSE----------------- 42

Query: 153 SELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLT-STIKVDADQSDLRFCFRIISPTKN 211
                                 +    +  + L     ++   D+   +  F +    K 
Sbjct: 43  --------------------DLKD--KKGDILLDENCCVESLPDKDGKKCLFLVKCFDKT 80

Query: 212 YTLQAESALDQMDWIEKITGVIASLLSSQAPER 244
           + + A     + +WI+ I   I  L    +   
Sbjct: 81  FEISASDKKKKQEWIQAIHSTIHLLKLGSSGPS 113

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 74.2 bits (182), Expect = 3e-16
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 41/159 (25%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQR 150
            + G       GYL K ++ + G W+ RFFVL++  G+L Y+  +               
Sbjct: 1   GSSGSSGENVYGYLMKYTNLVTG-WQYRFFVLNNEAGLLEYFVNEQ-------------- 45

Query: 151 NSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK 210
                                        R T+ L  + I    D+    F     +  +
Sbjct: 46  -----------------------SRNQKPRGTLQLAGAVISPS-DEDSHTFTV-NAASGE 80

Query: 211 NYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTS 249
            Y L+A  A ++  W+ ++         +       P+S
Sbjct: 81  QYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNSGPSS 119

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 73.9 bits (182), Expect = 4e-16
 Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 43/145 (29%)

Query: 98  QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGS 157
           + IR+GYL K+ S     WK  + VL     + +Y+K+                      
Sbjct: 4   KRIREGYLVKKGSVFNT-WKPMWVVLL-EDGIEFYKKK---------------------- 39

Query: 158 GLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR-FCFRIISPT-KNYTLQ 215
                           D     +  + L  ST+         R F F+I +   +++  Q
Sbjct: 40  ---------------SDNS--PKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQ 82

Query: 216 AESALDQMDWIEKITGVIASLLSSQ 240
           A    ++  W+  I   I  +   +
Sbjct: 83  AAFLEERDAWVRDINKAIKCIEGLE 107

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.8 bits (180), Expect = 4e-16
 Identities = 33/78 (42%), Positives = 45/78 (57%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
           G T LHLA  +  + +++LLL+ GA++NA D  G TPLH     G     KLLL  GAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 606 RAVNREGKTSLELAVESN 623
            A ++ G+T L LA  + 
Sbjct: 62  NAKDKNGRTPLHLAARNG 79

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D+ G +  + A    ++ ++  LL  GA  N  +     PLH+          K+LL  G
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
            D    + +G T+L  AV+S    
Sbjct: 86  LDDSQFDDKGNTALYYAVDSGNMQ 109

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.0 bits (175), Expect = 9e-14
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
               LH A    D  ++++LL  G + +  D +G T L+  +  G     KL + +    
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 606 RAVNREG-KTSLELAVESN 623
               + G KTS   AV  N
Sbjct: 122 MFYGKTGWKTSFYHAVMLN 140

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGL-TPLHRCILRGKAMFAKLLLTR 601
           D +G T L+ A DS ++  ++L ++    +      G  T  +  ++          L+ 
Sbjct: 92  DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151

Query: 602 GADPRAVNREGKTSLELAVESN 623
                 +     + + + +++ 
Sbjct: 152 IPSTFDLA-ILLSCIHITIKNG 172

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
                 T  + A    D+ ++   L    +     +  L+ +H  I  G      LLL  
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDY 183

Query: 602 GADPRAVNREGKT-SLELAVESN 623
                  N       ++LA+++ 
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNK 206

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 543 DLEGCT-LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +       + LA D+ DI ML+ L +Y  NI        +     +L   A  AK+++ +
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEK 243

Query: 602 GADPRAVNREGKTSL 616
             + ++ +      +
Sbjct: 244 HVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.8 bits (146), Expect = 5e-10
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTP-LHRCILRGKAMFAKLLLT 600
           D     + +H+   +  + M+ LLL Y  + N  +S    P +   I        + L  
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK 216

Query: 601 RGADPRAVNREG 612
              +  + N E 
Sbjct: 217 YDINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 5/78 (6%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
           G  L  +    +    L+  L    +    D  G +  +  I          LL  GA  
Sbjct: 1   GMDLSRINTWKSK--QLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 606 RAVNREGKTSLELAVESN 623
             +    +  L  A    
Sbjct: 58  NLLE--NEFPLHQAATLE 73

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 1/37 (2%), Positives = 10/37 (27%)

Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH 584
           +         D  + +++++      +        + 
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 77.1 bits (191), Expect = 5e-16
 Identities = 22/81 (27%), Positives = 33/81 (40%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
                + LH A ++  + +  +L+Q GANI+       TPL            K L+  G
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A     + EG T L LA +  
Sbjct: 68  ALVDPKDAEGSTCLHLAAKKG 88

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 75.9 bits (188), Expect = 1e-15
 Identities = 25/81 (30%), Positives = 38/81 (46%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T +  A +   + +++LLL  G++IN  D+     LH     G    A++LL   
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167

Query: 603 ADPRAVNREGKTSLELAVESN 623
            D  AVN  G + L +A   N
Sbjct: 168 CDLHAVNIHGDSPLHIAAREN 188

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.4 bits (184), Expect = 4e-15
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D E    LH A  S  + + E+LL    +++A +  G +PLH      +     L L+R 
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200

Query: 603 ADPRAVNREGKTSLELAVESN 623
           +D    N+EG+T L+ A  ++
Sbjct: 201 SDVTLKNKEGETPLQCASLNS 221

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.8 bits (167), Expect = 6e-13
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGA-NINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D EG T LHLA       +++ LL  G  ++N  D  G TP+            KLLL++
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133

Query: 602 GADPRAVNREGKTSLELAVESN 623
           G+D    + E    L  A  S 
Sbjct: 134 GSDINIRDNEENICLHWAAFSG 155

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.7 bits (151), Expect = 6e-11
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           ++ G + LH+A        + L L   +++   +  G TPL    L  +   A  +    
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

Query: 603 AD 604
            D
Sbjct: 234 QD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 7e-07
 Identities = 13/54 (24%), Positives = 21/54 (38%)

Query: 570 ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
            N         +PLH     G      +L+  GA+    + + +T L  A E+N
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN 55

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 77.9 bits (193), Expect = 5e-16
 Identities = 23/88 (26%), Positives = 33/88 (37%)

Query: 536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA 595
           S     D +   + +H A        L  L+  G  +N   +  ++PLH   L G     
Sbjct: 49  SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCV 108

Query: 596 KLLLTRGADPRAVNREGKTSLELAVESN 623
           K+LL  GA    V  +  T L  A  S 
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSG 136

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.2 bits (186), Expect = 4e-15
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             +  + LH AC    +  +++LL++GA +N   +   TPL    + G      LLL  G
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A  +  + +  + +  A    
Sbjct: 149 ASVQPES-DLASPIHEAARRG 168

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.8 bits (185), Expect = 6e-15
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
                T L+LAC++     ++ LL+ GA++N       +PLH  +       A LL+  G
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLMDFG 245

Query: 603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           AD +A N EGK  +EL       +S +  +  +  G
Sbjct: 246 ADTQAKNAEGKRPVELVPP----ESPLAQLFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.4 bits (176), Expect = 8e-14
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           + +  + +H A     +  +  L+ YG NI+   S   TPL+      +    K LL  G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 603 ADPRAVNREGKTSLELAVESN 623
           AD     +   + L   V + 
Sbjct: 214 ADVNQ-GKGQDSPLHAVVRTA 233

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.8 bits (146), Expect = 6e-10
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
                + LH    +A   +  LL+ +GA+  A ++ G  P+         +    L   G
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP-LAQLFLEREG 277

Query: 603 ADP 605
           A  
Sbjct: 278 ASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 10/103 (9%), Positives = 28/103 (27%), Gaps = 31/103 (30%)

Query: 552 LACDSADIGMLELLLQYGANINATDSR-------------------------------GL 580
           +            L+  G+++ + D +                                 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 581 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
           +P+H   + G  +  + L+++G     +  +  + L  A    
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG 103

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.9 bits (190), Expect = 5e-16
 Identities = 16/79 (20%), Positives = 32/79 (40%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
               LL  +    +  +++ ++    + +  +  G+T LH  +  G     K L+  G +
Sbjct: 36  LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95

Query: 605 PRAVNREGKTSLELAVESN 623
             A + +G T L  A   N
Sbjct: 96  VNAADSDGWTPLHCAASCN 114

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           ++ G   L     +         + +G  +       L  L    L G+    + ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 603 ADPRAVNREGKTSLELAVESN 623
            DP   N EG T+L  AV + 
Sbjct: 61  DDPSLPNDEGITALHNAVCAG 81

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           + EG T LH A  +    +++ L+Q+G N+NA DS G TPLH           K L+  G
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126

Query: 603 ADPRAVNR-EGKTSLELAVESNFADSEVLAILSDSHG 638
           A   A+   + +T+ +   E     ++    L     
Sbjct: 127 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-GVQ 162

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
            T  D++         +       + L      +   +   +  L     +      +L 
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND---DELP 188

Query: 599 LTRGADPRAVNREGKTSLELAVESNFADSE 628
           +  G     ++RE +  +E    +   D E
Sbjct: 189 MKEGDCMTIIHREDEDEIEWWW-ARLNDKE 217

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 51/154 (33%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
            + G    I+ G+L K+ S ++  W++R+FVL     LYYY+ +                
Sbjct: 1   GSSGSSGPIKMGWLKKQRSIVKN-WQQRYFVLR-AQQLYYYKDE---------------- 42

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDL--RFCFRIISPT 209
                                 D K   +  + L   TIK  A   +   +F F II  +
Sbjct: 43  ---------------------EDTK--PQGCMYLPGCTIKEIATNPEEAGKFVFEIIPAS 79

Query: 210 --------KNYTLQAESALDQMDWIEKITGVIAS 235
                    +Y L A S  +  +W++ +  V  S
Sbjct: 80  WDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS 113

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 73.7 bits (181), Expect = 6e-16
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 50/152 (32%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           I+ GY  K+ + ++  WKRR+F LD    + Y++ +                        
Sbjct: 15  IKAGYCVKQGAVMKN-WKRRYFQLD-ENTIGYFKSE------------------------ 48

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLT-STIKV--DADQSDLRFCFRIISPTKNYTLQA 216
                         +++      + L     ++    +D       F I++ ++ + +QA
Sbjct: 49  -------------LEKE--PLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQA 93

Query: 217 ESALDQMDWIEKITGVIASL------LSSQAP 242
           +S  +   WI+ ++G I +        SS+ P
Sbjct: 94  DSPEEMHSWIKAVSGAIVAQRGPGRSASSEHP 125

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.5 bits (187), Expect = 6e-16
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D+EG T L  A  +  +G+ E LL  G+N+N  D  G TPL   I+ G +  +  LL  G
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A+    N EG+T L +A +  
Sbjct: 125 ANVNDRNLEGETPLIVASKYG 145

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 74.3 bits (184), Expect = 2e-15
 Identities = 26/81 (32%), Positives = 35/81 (43%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T L  +       M   LL++GAN+N  +  G TPL      G++   K LL  G
Sbjct: 98  DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 603 ADPRAVNREGKTSLELAVESN 623
           AD  A +  G T+   A    
Sbjct: 158 ADISARDLTGLTAEASARIFG 178

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 73.2 bits (181), Expect = 3e-15
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D    T L +AC       ++ L++    +   D  G T L   +   +   A+ LL++G
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91

Query: 603 ADPRAVNREGKTSLELAVESNFAD-SEVLAILSDSHG 638
           ++    +  GKT L  ++   +++ S  L +    HG
Sbjct: 92  SNVNTKDFSGKTPLMWSIIFGYSEMSYFL-L---EHG 124

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G  +  +  + +    L+ L       N  DS   TPL    + G       L+   
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 603 ADPRAVNREGKTSLELAVESNFADS-EVLAILSDSHG 638
                 + EG T+L  AV++N     E L +   S G
Sbjct: 59  DKLEDKDIEGSTALIWAVKNNRLGIAEKL-L---SKG 91

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.9 bits (131), Expect = 2e-08
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           +LEG T L +A       +++ LL+ GA+I+A D  GLT      + G+    K+  
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 74.7 bits (185), Expect = 6e-16
 Identities = 26/81 (32%), Positives = 33/81 (40%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D EG T L  A     I ++E LLQ GA+         + L     +G     K+LL  G
Sbjct: 33  DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92

Query: 603 ADPRAVNREGKTSLELAVESN 623
            D    +  G T L  AV  N
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGN 113

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 74.3 bits (184), Expect = 1e-15
 Identities = 21/81 (25%), Positives = 35/81 (43%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
               +H      ++  L   ++    IN TD  G TPL      G+    + LL  GADP
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 606 RAVNREGKTSLELAVESNFAD 626
           + + +  +++L LA    + D
Sbjct: 63  QLLGKGRESALSLACSKGYTD 83

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 25/81 (30%), Positives = 36/81 (44%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
                + L LAC      ++++LL  G ++N  D  G TPL   +        K+LL  G
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

Query: 603 ADPRAVNREGKTSLELAVESN 623
           ADP      G  S++LAV   
Sbjct: 126 ADPTIETDSGYNSMDLAVALG 146

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 12/69 (17%), Positives = 25/69 (36%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T L  A     +  +++LL+ GA+       G   +   +  G     +++ +  
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

Query: 603 ADPRAVNRE 611
                  +E
Sbjct: 159 LKLLQNIKE 167

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.8 bits (195), Expect = 6e-16
 Identities = 12/79 (15%), Positives = 28/79 (35%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
            D +     +  A D +   +L+LL +    +  + + G     +   +      ++ L 
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344

Query: 601 RGADPRAVNREGKTSLELA 619
             A  R  +R    S  ++
Sbjct: 345 PSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.6 bits (192), Expect = 2e-15
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D E    +H+A        +  L++ G +    +  G T LH     G    AK L + G
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
                 +  G+  + LAV +N  D
Sbjct: 77  EVHSLWH--GQKPIHLAVMANKTD 98

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 72.6 bits (179), Expect = 8e-14
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQY-----GANINATDSRGLTPLHRCILRGKAMFAKL 597
           D    T L  A +  +   L+L++          ++  + +G + LH  IL      A  
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

Query: 598 LLTRGADPRAVNREGKTSLELAVESNFAD 626
            +  G D    + E    L L+V +    
Sbjct: 230 FVEMGIDVNMEDNEHTVPLYLSVRAAMVL 258

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.4 bits (176), Expect = 2e-13
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 543 DLEGCTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
             +G T LH         + M+++L+Q GA+  A D    TPL R +         L++ 
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 601 R-----GADPRAVNREGKTSLELAVESNFAD 626
                        N++G + L  A+  N+ D
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWED 225

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 16/109 (14%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           + +G + LH A       +    ++ G ++N  D+    PL+  +     +  K LL + 
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT 267

Query: 603 A-------------DPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
                                     +  A + +    EVL +L     
Sbjct: 268 DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQ--EVLQLLQ-EKL 313

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 23/111 (20%)

Query: 536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN---------------------INA 574
           S G+      G   +HLA  +    ++  L++                          + 
Sbjct: 74  SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHV 133

Query: 575 TDSRGLTPLHRCILRGKAMF--AKLLLTRGADPRAVNREGKTSLELAVESN 623
              +G T LH C+  G       K+L+  GA P A ++  +T L  A+E  
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR 184

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 13/94 (13%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQ-------------YGANINATDSRGLTPLHRCILR 589
           D E    L+L+  +A + + + LLQ              G  +       L  +      
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 590 GKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
            K    +LL  +  +       G        +  
Sbjct: 301 SKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKA 334

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 7e-09
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 560 GMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
           G   +      N   +D   +  +H    +G+    + L+  G  P   NR G T+L LA
Sbjct: 1   GPGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60

Query: 620 VESNFADSEVLAILSDSHG 638
            +      +    L+ S G
Sbjct: 61  CKFGCV--DTAKYLA-SVG 76

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 77.8 bits (191), Expect = 9e-16
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG----KAMFAKLL 598
           D  G T LH     A++ +++ L+++G+N    D+ G + L + +          F  LL
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187

Query: 599 LTRGADPRAVNREGKTSLELAVESN 623
                     +   +T L   + ++
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITS 212

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.6 bits (162), Expect = 5e-12
 Identities = 38/180 (21%), Positives = 59/180 (32%), Gaps = 4/180 (2%)

Query: 462 EGVRTNDKKAVYRHIVNFEVDVNA-VYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGN 520
           E   T+D       I+ F  D+ +        I     +  +  NEQ     +       
Sbjct: 13  ENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLF 72

Query: 521 SSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINA-TDSRG 579
              +    SLN    S   +          H++ DS    + +       N+N   D  G
Sbjct: 73  PEIQEMPTSLNNDS-SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG 131

Query: 580 LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES-NFADSEVLAILSDSHG 638
            TPLH           K L+  G++    +  G++ L  AV+S N  DS     L D   
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.2 bits (161), Expect = 6e-12
 Identities = 19/92 (20%), Positives = 30/92 (32%)

Query: 531 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 590
                 +  T +        +     + +  L+L       +NA DS G T L+     G
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

Query: 591 KAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
                  LL  GADP   N+ G   ++     
Sbjct: 295 NISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.7 bits (190), Expect = 1e-15
 Identities = 24/82 (29%), Positives = 37/82 (45%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           ++  G T LH A   +   ++ELLL++GA+       G TP     + G     KL L++
Sbjct: 35  EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94

Query: 602 GADPRAVNREGKTSLELAVESN 623
           GAD    +  G T+   A    
Sbjct: 95  GADVNECDFYGFTAFMEAAVYG 116

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 74.4 bits (184), Expect = 8e-15
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 543 DLEGCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMF----AKL 597
              G T L  A +   + +L++LL + GA++NA D+ G   L   +L            L
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 598 LLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           LL  GAD       GKT L LAVE       ++  L +   
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKK--HLGLVQRLLEQEH 243

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.1 bits (178), Expect = 4e-14
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 543 DLEGCTLLHLACDSADIG----MLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
           D  G   L  A  S+D      +  LLL +GA++N    RG TPL   + +      + L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 599 LTR-GADPRAVNREGKTSLELAVESNFAD 626
           L +   +    + +GKT+L LAVE     
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKK 267

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 9e-14
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLLTRGA 603
           E   LL  A  + D+ +++ LL+ GAN+N  +   G TPLH  +   +    +LLL  GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 604 DPRAVNREGKTSLELAVESNFAD 626
           DP    + G T   LA  +    
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVK 86

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.0 bits (175), Expect = 9e-14
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T   LA  +  + +L+L L  GA++N  D  G T      + GK    K L  RG
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 603 AD----------PRAVNREGKTSLELAVESN 623
           A+             + + G T+L  A E  
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 7e-11
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
              G T L LA +   +G+++ LL Q    IN TDS G T L   +       A+LL  R
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

Query: 602 GADPRAVN 609
           GA     +
Sbjct: 276 GASTDCGD 283

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 43/157 (27%)

Query: 80  SSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKS 139
           SS    +             +R+G+L K+ S     WK+R+FVL     L+YYR +    
Sbjct: 2   SSGSSGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLS-DLCLFYYRDE---- 56

Query: 140 SGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDL 199
                                             +E      ++ L +  I +   +  +
Sbjct: 57  ---------------------------------KEEG--ILGSILLPSFQIALLTSEDHI 81

Query: 200 --RFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI 233
             ++ F+   P  + Y    ++  +   W++ +    
Sbjct: 82  NRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA 118

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 41/143 (28%)

Query: 102 QGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLS 161
           +G L K ++ L G W+ R+FVLD  G+L YY  Q                          
Sbjct: 2   EGVLYKWTNYLTG-WQPRWFVLD-NGILSYYDSQ-------------------------- 33

Query: 162 RWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALD 221
                       D    ++ ++ +    IKV     + R    II   +++ ++A +A +
Sbjct: 34  -----------DDVCKGSKGSIKMAVCEIKVH-SADNTRMEL-IIPGEQHFYMKAVNAAE 80

Query: 222 QMDWIEKITGVIASLLSSQAPER 244
           +  W+  +    ASL  ++   R
Sbjct: 81  RQRWLVALGSSKASLTDTRLVPR 103

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 32/164 (19%), Positives = 52/164 (31%), Gaps = 49/164 (29%)

Query: 92  AAKGKVQTIRQGYLSKRSS--NLRGDWKRRFFVLDSRG-MLYYYRKQCSKSSGSGSQLSS 148
            + G       GYLSK      +RG WK R+F  D R   LYY R               
Sbjct: 1   GSSGSSGKKLCGYLSKFGGKGPIRG-WKSRWFFYDERKCQLYYSRTA------------- 46

Query: 149 QRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP 208
                                    D       +++L ++     AD       F I +P
Sbjct: 47  ------------------------QDAN--PLDSIDLSSAVFDCKADAE--EGIFEIKTP 78

Query: 209 TKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMG 252
           ++  TL+A +    + W++++        +S       P+ P  
Sbjct: 79  SRVITLKAATKQAMLYWLQQLQMKRWEFHNSPPA----PSGPSS 118

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
           M +      L  A    D+  L  LLQ   N+NA +  G T L    L    + A+ LL 
Sbjct: 1   MAE-PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEI-ARRLLL 58

Query: 601 RGADPRAVNREGKTSLELAVESNFAD-SEVLAILSDSHG 638
           RGA+P   +R G   +  A  + F D  + L +      
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTL-L---EFQ 93

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G  ++H A  +  +  L+ LL++ A++N  D+ G  PLH     G     + L+   
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126

Query: 603 A-DPRAVNREGKTSLELAVESN 623
           A +    N +G T+ +LA    
Sbjct: 127 ASNVGHRNHKGDTACDLARLYG 148

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGA-NINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D EG   LHLA     + ++E L+++ A N+   + +G T      L G+     L+   
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

Query: 602 GA 603
           GA
Sbjct: 160 GA 161

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 29/81 (35%), Positives = 48/81 (59%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T L LA     + ++E+LL+ GA++NA D  G TPLH   + G     ++LL  G
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 603 ADPRAVNREGKTSLELAVESN 623
           AD  A ++ GKT+ ++++++ 
Sbjct: 137 ADVNAQDKFGKTAFDISIDNG 157

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 33/81 (40%), Positives = 45/81 (55%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA  +  + ++E+LL+ GA++NA D  G+TPL    L G     ++LL  G
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103

Query: 603 ADPRAVNREGKTSLELAVESN 623
           AD  A + EG T L LA    
Sbjct: 104 ADVNANDMEGHTPLHLAAMFG 124

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 69.3 bits (171), Expect = 5e-14
 Identities = 26/78 (33%), Positives = 36/78 (46%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
               L  A  +     + +L+  GA++NA D+ G TPLH     G     ++LL  GAD 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 606 RAVNREGKTSLELAVESN 623
            AV+  G T L LA    
Sbjct: 74  NAVDHAGMTPLRLAALFG 91

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.7 bits (128), Expect = 3e-08
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           D+EG T LHLA     + ++E+LL+ GA++NA D  G T     I  G    A++L 
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G + +H A  +  +  L++L+++GA++N  D  G  P+H  +  G       L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AE 123

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           +D    +  G T LELA++    D
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQD 147

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 72.4 bits (179), Expect = 3e-15
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 543 DLEGCTLLHLAC-DSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           +  G T L +    S  I     LL+ GA+ N  D+ G +P+H     G     K+L+  
Sbjct: 33  NRFGKTALQVMMFGSTAI--ALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90

Query: 602 GADPRAVNREGKTSLELAVESN 623
           GAD    +  G   + LAV+  
Sbjct: 91  GADVNVPDGTGALPIHLAVQEG 112

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 66.3 bits (163), Expect = 4e-13
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 12/87 (13%)

Query: 546 GCTLLHLACDSADIGML-ELLLQYGANINATDSRGLTPLHRCILRGKAMF-----AKLLL 599
               L  A    D+  +  LL +   + +A +  G T L         MF     A  LL
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ------VMMFGSTAIALELL 55

Query: 600 TRGADPRAVNREGKTSLELAVESNFAD 626
            +GA P   +  G + +  A  + F D
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLD 82

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           D  G   +HLA       ++  L    ++++  D+RGLTPL   + RG      +L 
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 31/84 (36%), Positives = 40/84 (47%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +  T LH AC +    ++E LLQ G  +N  D  G +PLH     G     K LL +G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A   AVN+ G T L  A   N  +
Sbjct: 97  AHVNAVNQNGCTPLHYAASKNRHE 120

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 74.5 bits (183), Expect = 3e-15
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 544 LEGC----TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           +EGC     + +LA       + E +L   +    TD    T LH     G     + LL
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 600 TRGADPRAVNREGKTSLELAVESNFAD 626
             G      +  G + L +A  +   +
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDE 87

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 26/84 (30%), Positives = 37/84 (44%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +  GCT LH A       +  +LL+ GAN +A D    T +HR   +G      +LL   
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A     + EG T L LA +    +
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVE 186

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G + LH+A  +    +++ LL  GA++NA +  G TPLH    + +   A +LL  G
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A+P A +    T++  A       
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLK 153

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 28/81 (34%), Positives = 41/81 (50%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D    T +H A    ++ M+ +LL Y A+ N  D+ G TPLH      +   AK L+T+G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195

Query: 603 ADPRAVNREGKTSLELAVESN 623
           A     N+E KT L++A    
Sbjct: 196 ASIYIENKEEKTPLQVAKGGL 216

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D EG T LHLACD   +   + L+  GA+I   +    TPL   + +G        L  G
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ--VAKGGLGLILKRLAEG 226

Query: 603 ADP 605
            + 
Sbjct: 227 EEA 229

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 18/85 (21%), Positives = 34/85 (40%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
             L    LL  A  + ++ +++  ++   + +  +  G+T LH  I          L+T 
Sbjct: 17  ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA 76

Query: 602 GADPRAVNREGKTSLELAVESNFAD 626
           GA+  + +  G T L  A   N   
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTV 101

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRC--ILRGKAMFAKLLL 599
           D  G T LH A    D  +   L+Q+GA I AT    G T   +C     G A  A  L 
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143

Query: 600 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
                   +N     +L          +E    LS   G
Sbjct: 144 DVEQSMGLMNSGAVYAL------WDYSAEFGDELSFREG 176

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 563 ELLLQYGANINATDSR---GLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
             +L+   +           L  L    L G+    +  +    DP   N EG T+L  A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 620 VESNFAD 626
           +      
Sbjct: 62  ICGANYS 68

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 7/84 (8%), Positives = 15/84 (17%), Gaps = 3/84 (3%)

Query: 542 DDLEGCTLLHLACDSAD--IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
              +G T         +        L     ++   +S  +  L                
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL-SFRE 175

Query: 600 TRGADPRAVNREGKTSLELAVESN 623
                    +   +T    A    
Sbjct: 176 GESVTVLRRDGPEETDWWWAALHG 199

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 73.2 bits (181), Expect = 3e-15
 Identities = 25/84 (29%), Positives = 35/84 (41%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             E  + L LA       ++ LLL+   +IN  D  G TPL   +        + LL RG
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           AD       G T ++LAV   +  
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRK 149

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.4 bits (179), Expect = 4e-15
 Identities = 23/81 (28%), Positives = 31/81 (38%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T L  A    +I  +  LL++GA+ +       + L      G      LLL R 
Sbjct: 33  DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92

Query: 603 ADPRAVNREGKTSLELAVESN 623
            D    +  G T L  AV  N
Sbjct: 93  VDINIYDWNGGTPLLYAVRGN 113

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.9 bits (175), Expect = 2e-14
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGAN-INATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
               +H      ++  L+  L+ G N +N  D RG TPL      G+    + LL  GAD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 605 PRAVNREGKTSLELAVESNFAD 626
           P  + +E +++L LA    + D
Sbjct: 62  PHILAKERESALSLASTGGYTD 83

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 67.8 bits (167), Expect = 2e-13
 Identities = 15/72 (20%), Positives = 24/72 (33%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T L  A     +  +E LL  GA++      G TP+   +  G     +++    
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158

Query: 603 ADPRAVNREGKT 614
                 N     
Sbjct: 159 LKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTP 582
              G T + LA       + +++  +   +  ++     P
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 3e-15
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
                  L  A     +  +  LL+ GA+ NA +  G  P+   +  G A  A+LLL  G
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHG 67

Query: 603 ADPRAVNREGKTS-LELAVESNFAD 626
           A+P   +    T  +  A    F D
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLD 92

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 68.6 bits (169), Expect = 4e-14
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 543 DLEGCTLLHLAC-DSADIGMLELLLQYGANINATDSRGLT-PLHRCILRGKAMFAKLLLT 600
           +  G   + +    SA +   ELLL +GA  N  D   LT P+H     G      +L  
Sbjct: 42  NRFGRRPIQVMMMGSAQV--AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR 99

Query: 601 RGADPRAVNREGKTSLELAVESNFAD 626
            GA     +  G+  ++LA E    D
Sbjct: 100 AGARLDVCDAWGRLPVDLAEEQGHRD 125

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 543 DLEGCTL-LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D    T  +H A     +  L +L + GA ++  D+ G  P+     +G    A+ L   
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

Query: 602 GAD 604
             D
Sbjct: 134 TGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
              I+         L     RG+    + LL  GADP A+NR G+  +++ 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 71.9 bits (176), Expect = 3e-15
 Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 37/162 (22%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
            + G    +R G+L ++SS LR  WKR +F L   G L YY                +  
Sbjct: 1   GSSGSSGLVRGGWLWRQSSILRR-WKRNWFALWLDGTLGYYH--------------DETA 45

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR---FCFRIISP 208
             E    ++                    +  ++       D    + R       +   
Sbjct: 46  QDEEDRVVIH------------------FNVRDIKVGQECQDVQPPEGRSRDGLLTVNLR 87

Query: 209 T-KNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTS 249
                 L AE+  D + W   +    ++   + A     P+S
Sbjct: 88  EGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPSGPSS 129

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 71.2 bits (176), Expect = 4e-15
 Identities = 33/78 (42%), Positives = 45/78 (57%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
           G T LHLA  +  + +++LLL+ GA++NA D  G TPLH     G     KLLL  GAD 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 606 RAVNREGKTSLELAVESN 623
            A ++ G+T L LA  + 
Sbjct: 62  NAKDKNGRTPLHLAARNG 79

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 70.8 bits (175), Expect = 5e-15
 Identities = 34/81 (41%), Positives = 46/81 (56%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LHLA  +  + +++LLL+ GA++NA D  G TPLH     G     KLLL  G
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

Query: 603 ADPRAVNREGKTSLELAVESN 623
           AD  A ++ G+T L LA  + 
Sbjct: 92  ADVNAKDKNGRTPLHLAARNG 112

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.6 bits (182), Expect = 8e-15
 Identities = 20/82 (24%), Positives = 33/82 (40%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
                 T LH A     + M+  L++YGA+ +  D  G + +H     G       L+ +
Sbjct: 72  GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131

Query: 602 GADPRAVNREGKTSLELAVESN 623
           G D   +++ G T L  A    
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRT 153

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 68.6 bits (169), Expect = 4e-13
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 543 DLEGCTLLHLAC---DSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLL 598
           D  G T L  A     S D     LLL +  ++N  D     T LH  +L G      LL
Sbjct: 139 DQNGMTPLMWAAYRTHSVDP--TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196

Query: 599 LTRGADPRAVNREGKTSLELAVESN 623
           L  GA+  A N +G+++L+LA +  
Sbjct: 197 LEAGANVDAQNIKGESALDLAKQRK 221

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.8 bits (167), Expect = 6e-13
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D      +  A           L++ G ++   D   +T LH   +  +    K  +++G
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65

Query: 603 ADPRAVNRE-GKTSLELAVESN 623
           A    +  +   T L  A    
Sbjct: 66  AIVDQLGGDLNSTPLHWATRQG 87

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.4 bits (145), Expect = 4e-10
 Identities = 16/63 (25%), Positives = 26/63 (41%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D     T LH A  + +  ++ LLL+ GAN++A + +G + L     R        L   
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

Query: 602 GAD 604
              
Sbjct: 233 RQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.8 bits (128), Expect = 8e-08
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 571 NINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
           ++   D      + +    G     + L+  G D R  ++E  T L  A  +N  D
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID 56

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 72.5 bits (177), Expect = 1e-14
 Identities = 38/244 (15%), Positives = 76/244 (31%), Gaps = 59/244 (24%)

Query: 12  YELLHQMEPYINQVLTYAQQSRERSNYEQAALNER-------MQEYKRQIDRESRWASNG 64
             LL  +E ++   L     S++     ++ + +        +QE++ + D E     + 
Sbjct: 7   RNLLADVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQDKGDAEDGDEYDD 66

Query: 65  SNGSPNGDGIQAIGRSS-----HKMIEAVMQSAAKGKVQTIRQGYLSKRSSN---LRGDW 116
               P      A  R                 AA+     I+ GYL KR  +   L  +W
Sbjct: 67  PFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEW 126

Query: 117 KRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK 176
           ++R+  L  + + YYY     K                                      
Sbjct: 127 QKRWCALS-KTVFYYYGSDKDKQ------------------------------------- 148

Query: 177 SAARHTVNLLTSTIKVDA---DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV 232
              +    +    ++++           CF I +P  + Y   A S  D  +W++++  +
Sbjct: 149 --QKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 206

Query: 233 IASL 236
           +  L
Sbjct: 207 LQDL 210

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
                   L  A     +  +  LL+ GAN NA +S G  P+   +  G A  A+LLL  
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH 66

Query: 602 GADPRAVNREGKTS-LELAVESNFAD 626
           GA+P   +    T  +  A    F D
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLD 92

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.4 bits (171), Expect = 4e-14
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 543 DLEGCTLLHLAC-DSADIGMLELLLQYGANINATDSRGLT-PLHRCILRGKAMFAKLLLT 600
           +  G   + +    SA +   ELLL +GA  N  D   LT P+H     G      +L  
Sbjct: 42  NSYGRRPIQVMMMGSARV--AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR 99

Query: 601 RGADPRAVNREGKTSLELAVESN 623
            GA     +  G+  ++LA E  
Sbjct: 100 AGARLDVRDAWGRLPVDLAEELG 122

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.5 bits (166), Expect = 1e-13
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 543 DLEGCTL-LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D    T  +H A     +  L +L + GA ++  D+ G  P+      G    A+ L   
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133

Query: 602 GADPRAVNREGKTSLELAVE 621
               R  N     + E   +
Sbjct: 134 AGGTRGSNHARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 566 LQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV 620
           ++  A  +         L     RG+    + LL  GA+P A N  G+  +++ +
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM 53

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 70.2 bits (172), Expect = 1e-14
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 43/159 (27%)

Query: 78  GRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS 137
           G S     +              + G+L K++S+    W +R+FVL     L+YY+ +  
Sbjct: 1   GSSGSSGGKRSHSMKRNPNAPVTKAGWLFKQASSGVKQWNKRWFVLV-DRCLFYYKDE-- 57

Query: 138 KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV--DAD 195
                                               +E      ++ LL+  +     +D
Sbjct: 58  -----------------------------------KEES--ILGSIPLLSFRVAAVQPSD 80

Query: 196 QSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI 233
               +  F+      + Y   AES  +Q  WI+ +    
Sbjct: 81  NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 43/146 (29%)

Query: 91  SAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQR 150
           S + G     + G+L K++S+    W +R+FVL     L+YY+ +               
Sbjct: 3   SGSSGNAPVTKAGWLFKQASSGVKQWNKRWFVLV-DRCLFYYKDE--------------- 46

Query: 151 NSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV--DADQSDLRFCFRIISP 208
                                  +E      ++ LL+  +     +D    +  F+    
Sbjct: 47  ----------------------KEES--ILGSIPLLSFRVAAVQPSDNISRKHTFKAEHA 82

Query: 209 -TKNYTLQAESALDQMDWIEKITGVI 233
             + Y   AES  +Q  WI+ +    
Sbjct: 83  GVRTYFFSAESPEEQEAWIQAMGEAA 108

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 69.9 bits (171), Expect = 1e-14
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 33/141 (23%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           ++QGYL+K+    +  WK R FVL       +Y               S+  +  +G   
Sbjct: 19  VKQGYLAKQGHKRKN-WKVRRFVLRKDPAFLHYYD------------PSKEENRPVGGFS 65

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR-FCFRIISPTK-NYTLQAE 217
           L                      V+ L         + +++   F++I+    +Y +QA 
Sbjct: 66  L------------------RGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQAS 107

Query: 218 SALDQMDWIEKITGVIASLLS 238
           S  ++ +WIE I  + +   S
Sbjct: 108 SKAERAEWIEAIKKLTSGPSS 128

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 25/81 (30%), Positives = 40/81 (49%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP 605
               L  A  +     + +L+  GA++ A D  G TPLH     G     KLLL  GAD 
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83

Query: 606 RAVNREGKTSLELAVESNFAD 626
            A ++ GKT+ ++++++   D
Sbjct: 84  XAQDKFGKTAFDISIDNGNED 104

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 563 ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES 622
             L+  G+++ +        L      G+    ++L+  GAD  A ++ G T L LA  +
Sbjct: 11  SGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN 67

Query: 623 N 623
            
Sbjct: 68  G 68

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
           D  G T LHLA  +  + +++LLL+ GA++ A D  G T     I  G    A++L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 42/130 (32%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
            R G LSK ++ + G W+ R+ VL +   L YY+ +                        
Sbjct: 2   ERCGVLSKWTNYIHG-WQDRWVVLKN-NALSYYKSE------------------------ 35

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
                         + +   R ++ L  + I            F I      + L+A+  
Sbjct: 36  -------------DETEYGCRGSICLSKAVITPHDFDE---CRFDISVNDSVWYLRAQDP 79

Query: 220 LDQMDWIEKI 229
             +  WI+ I
Sbjct: 80  DHRQQWIDAI 89

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATD-------------SRGLTPLHRCILR 589
             EG T LH+A  + ++ ++  LL  GA+++A                 G  PL      
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 590 GKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
           G     +LL+  GAD RA +  G T L + +   
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP 165

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 70.7 bits (174), Expect = 7e-14
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 546 GCTLLHLACDSADIGML-ELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
             + L LA    D+  L +LL   G  ++   + G T LH   L      A +L+    +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 605 -----PRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
                  +   EG+T+L +AV +   +  ++  L  + G
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQ--NVNLVRALL-ARG 98

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 531 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 590
             +            G   L  A       ++ LL+++GA+I A DS G T LH  IL+ 
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP 165

Query: 591 KAMFA----KLLLTRGAD------PRAVNREGKTSLELAVESN 623
              FA     LLL+              N +G T  +LA    
Sbjct: 166 NKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 23/115 (20%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANI-----NATDSRGLTPLHRCILRGKAMFAKL 597
              G T LH+A    ++    +L++    +      +    G T LH  ++       + 
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93

Query: 598 LLTRGAD-------------PRAVNREGKTSLELAVESNFAD-SEVLAILSDSHG 638
           LL RGA              P  +   G+  L  A      +   +L I    HG
Sbjct: 94  LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL-I---EHG 144

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 49/149 (32%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQR 150
           +  G +  I+QG L K+    +  WK R F+L      L+YY                  
Sbjct: 2   SFTGVI--IKQGCLLKQGHRRKN-WKVRKFILREDPAYLHYYDPA--------------- 43

Query: 151 NSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR-----FCFRI 205
                                   E       ++L    +      S+ R       F I
Sbjct: 44  ----------------------GAED--PLGAIHLRGCVVTSVESNSNGRKSEEENLFEI 79

Query: 206 ISPTK-NYTLQAESALDQMDWIEKITGVI 233
           I+  + +Y LQA +  ++ +WI+ I    
Sbjct: 80  ITADEVHYFLQAATPKERTEWIKAIQMAS 108

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 70.8 bits (173), Expect = 5e-14
 Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 52/207 (25%)

Query: 86  EAVMQSAAKGKVQTIRQGYLSKRSSNLRGD----WKRRFFVLDSRGMLYYYRKQCSKSSG 141
           E  +   +K +   ++QG+L              WK+R+FVL  +  L Y+         
Sbjct: 47  ETFLWFRSKQEA--LKQGWLHNNGGGSSTLSRRNWKKRWFVLR-QSKLMYFEND------ 97

Query: 142 SGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRF 201
                                           +EK   + TV +   + K   D ++   
Sbjct: 98  -------------------------------SEEK--LKGTVEV--RSAKEIIDNTNKEN 122

Query: 202 CFRIISPTKNYTLQAESALDQMDWIEKITGVIASL---LSSQAPERCLPTSPMGSGHHRS 258
              II   + + L AES  D   W   ++ V +S    +     E+  P + +G+     
Sbjct: 123 GIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGT-LDVG 181

Query: 259 ASDSSSFESSDFDHAAVEEYTSERNLT 285
             DS     S     +    T+ R L 
Sbjct: 182 LIDSVCASDSPDRPNSFVIITANRVLH 208

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 7e-14
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL--- 599
           D +  T L LA  +    ++  L++ GA+    +    + LH+            +L   
Sbjct: 163 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST 222

Query: 600 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
               D   ++R G T+L +   +   D    A L    G
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
             +G T LH A   +++ +++ L+ + G+N +  D  G TP+      G+      L+ +
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
           GA   AV+    T+ +LA  +N     ++ I  D   
Sbjct: 336 GASVEAVDATDHTARQLAQANNHH--NIVDIF-DRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQY--------GANINATDSRGLTPLHRCILRGKAM 593
           D     T+LH    ++     E L+ +        GA++NA D    TPL   +L  +  
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 594 FAKLLLTRGADPRAVNREGKTSLELAVESN 623
               L+  GADP   N+  +++L  A  + 
Sbjct: 181 LVAYLMKAGADPTIYNKSERSALHQAAANR 210

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.0 bits (154), Expect = 8e-11
 Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 6/118 (5%)

Query: 510 LERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLE----GCTLLHLACDSADIGMLELL 565
           +E    +   + S  SS  SL  A           E              + +  + +  
Sbjct: 21  MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFN 80

Query: 566 LQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
                     +      LH       A+  + +     +        +T L     ++
Sbjct: 81  HTNLQIPTEPEPESPIKLHTEAAGSYAI-TEPITRESVNIIDPR-HNRTVLHWIASNS 136

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 543 DLEGCTLLHLAC-DSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK--------AM 593
           + E    LH     S  I   E + +   NI        T LH                 
Sbjct: 91  EPESPIKLHTEAAGSYAI--TEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVH 147

Query: 594 FAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
            AK  +  GAD  A++ +  T L LAV +    
Sbjct: 148 EAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D +G T + LA     I ++  L+Q GA++ A D+   T               +     
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

Query: 603 AD 604
            +
Sbjct: 370 PE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 12/93 (12%)

Query: 543 DLEGCTLLHLACDSA---DIGMLELLLQYGANIN--------ATDSRGLTPLHRCILRGK 591
           D  G T L +   +     +   +LL++ GA ++        +   +G T LH       
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 592 AMFAKLLLT-RGADPRAVNREGKTSLELAVESN 623
               K L+  +G++    + +GKT + LA +  
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 13/97 (13%), Positives = 18/97 (18%), Gaps = 13/97 (13%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
                   L  A     I             N      L P  +    G         T 
Sbjct: 33  SITSSQHSLLEASYDGYIK---------RQRNELQHYSLYPNPQGYGNGNDFLGDFNHTN 83

Query: 602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
              P     E    L      ++A +E +        
Sbjct: 84  LQIPTEPEPESPIKLHTEAAGSYAITEPIT----RES 116

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.2 bits (173), Expect = 8e-14
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
             +G T LHLA       + + L++ GA++   D     PLHR    G     +LL   G
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 603 -ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
            +     +++G T L  A+       +   +L + +G
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHG--DAAVLLVEKYG 198

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.6 bits (169), Expect = 3e-13
 Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSR---GLTPLHRCILRGKAMFAKLLL 599
           D +G   LH +       +   LL    N+N  D     G TP H     G     K L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92

Query: 600 TR--GADPRAVNREGKTSLELAVESN 623
            R    D   +  +G T L LAV   
Sbjct: 93  DRPLKPDLNKITNQGVTCLHLAVGKK 118

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.2 bits (168), Expect = 4e-13
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGAN-INATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D      LH A     + ++ELL   G + +N  D +G TPL   +  G    A LL+ +
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 602 -GADPRAVNREGKTSLELAVESN 623
            GA+   V+ +G  + ++A+   
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNEQ 219

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 4/82 (4%)

Query: 546 GCTLLHLACDSADIG-MLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
               LH AC   +   + ELL    + +   D  G  PLH  +          LL++  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 605 PRA---VNREGKTSLELAVESN 623
                  +  G T   +A    
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVG 83

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 42/149 (28%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
            + G   +   GYL +   + +  WK  +FV+    +LY Y                   
Sbjct: 1   GSSGSSGSTMSGYLYRSKGSKKP-WKHLWFVI-KNKVLYTYAAS---------------- 42

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK- 210
                                 D    A  +  LL  T+ +  D++     F+++     
Sbjct: 43  ---------------------EDVA--ALESQPLLGFTVTLVKDENSESKVFQLLHKGMV 79

Query: 211 NYTLQAESALDQMDWIEKITGVIASLLSS 239
            Y  +A+ A     WI+       S  SS
Sbjct: 80  FYVFKADDAHSTQRWIDAFQEGTVSGPSS 108

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 66.5 bits (162), Expect = 2e-13
 Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 41/144 (28%)

Query: 97  VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELG 156
           V  +++G+L KR   ++  W+ R+F+L + G    Y+++        + L          
Sbjct: 6   VAIVKEGWLHKRGEYIKT-WRPRYFLLKNDGTFIGYKERPQDVDQREAPL---------- 54

Query: 157 SGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP----TKNY 212
                                   +  ++    +            F I           
Sbjct: 55  ------------------------NNFSVAQCQLMKTERPRP--NTFIIRCLQWTTVIER 88

Query: 213 TLQAESALDQMDWIEKITGVIASL 236
           T   E+  ++ +W   I  V   L
Sbjct: 89  TFHVETPEEREEWTTAIQTVADGL 112

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 47/144 (32%)

Query: 100 IRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELG 156
           I+QGYL K+S +      +W++R+ V+ SRG+ YYY  +                     
Sbjct: 4   IKQGYLEKKSKDHSFFGSEWQKRWCVV-SRGLFYYYANE--------------------- 41

Query: 157 SGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV---DADQSDLRFCFRIISP-TKNY 212
                             ++   + T  +   ++++       S    CF + S   + Y
Sbjct: 42  ----------------KSKQ--PKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTY 83

Query: 213 TLQAESALDQMDWIEKITGVIASL 236
              A S  +  DW+++I+ ++  L
Sbjct: 84  EFTATSPAEARDWVDQISFLLKDL 107

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 47/147 (31%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
           I+QG L K+    +  WK R F+L      L+YY                          
Sbjct: 19  IKQGCLLKQGHRRKN-WKVRKFILREDPAYLHYYDPA----------------------- 54

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR-----FCFRIISPTK-NY 212
                           E       ++L    +      S+ R       F II+  + +Y
Sbjct: 55  --------------GAED--PLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHY 98

Query: 213 TLQAESALDQMDWIEKITGVIASLLSS 239
            LQA +  ++ +WI+ I     +  S 
Sbjct: 99  FLQAATPKERTEWIKAIQMASRTGKSG 125

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 46/146 (31%)

Query: 101 RQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGS 157
           ++G L  ++      +  WK  F VL S G+LY Y  +                      
Sbjct: 2   KEGMLHYKAGTSYLGKEHWKTCFVVL-SNGILYQYPDR---------------------- 38

Query: 158 GLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV--DADQSDLRFCFRIISPT-KNYTL 214
                           D       +VN+          A+ +D    F++I        L
Sbjct: 39  ---------------TDVI--PLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLEL 81

Query: 215 QAESALDQMDWIEKITGVIASLLSSQ 240
            AES  +  +W++ +   ++  +  Q
Sbjct: 82  SAESEAEMAEWMQHLCQAVSKGVIPQ 107

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 47/161 (29%)

Query: 91  SAAKGKVQTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLS 147
             A+     I+ GYL KR  +   L  +W++R+  L S+ + YYY               
Sbjct: 9   IPAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCAL-SKTVFYYYGSD------------ 55

Query: 148 SQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDA---DQSDLRFCFR 204
                                     D++   +    +    ++++           CF 
Sbjct: 56  -------------------------KDKQ--QKGEFAIDGYDVRMNNTLRKDGKKDCCFE 88

Query: 205 IISP-TKNYTLQAESALDQMDWIEKITGVIASLLSSQAPER 244
           I +P  + Y   A S  D  +W++++  ++  L S   PE 
Sbjct: 89  ICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGSDVIPED 129

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 17/116 (14%)

Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS--------------RGLTPLHR 585
           T    +G T LH+A +  ++ ++ LL++ GA++ A  +               G  PL  
Sbjct: 95  TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSL 154

Query: 586 CILRGKAMFAKLLLTRG---ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
                +    K LL      AD  A +  G T L   VE      +    ++  + 
Sbjct: 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 23/97 (23%)

Query: 543 DLEGCTLLHLACDSAD---------IGMLELLLQYGANIN-------ATDSRGLTPLHRC 586
           D  G T+LH   + AD           M   +L  GA ++        T+ +GLTPL   
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 587 ILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
              GK      +L R                 A   +
Sbjct: 241 ASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 26/110 (23%), Positives = 35/110 (31%), Gaps = 28/110 (25%)

Query: 542 DDLEGCTLLHLACDSADIGMLE---LLLQYGANINAT-----------DSRGLTPLHRCI 587
           D   G T L  A  +   G  +   LLL      ++              +G T LH  I
Sbjct: 50  DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAI 109

Query: 588 LRGKAMFAKLLLTRGADPRAVNRE--------------GKTSLELAVESN 623
            R       LL+  GAD +A                  G+  L LA  +N
Sbjct: 110 ERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 22/98 (22%)

Query: 548 TLLHLACDSADIGMLELLLQY-------GANINATD-SRGLTPLHRCIL---RGKAMFAK 596
             +  A   ++   LE LL +         +    D   G T L + +L    G+     
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 597 LLLTRGADPRAV-----------NREGKTSLELAVESN 623
           LLL       ++             +G+T+L +A+E  
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 62.4 bits (151), Expect = 7e-12
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 14/138 (10%)

Query: 100 IRQGYLSKR-SSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
             +G+L+     +  G W RR+ VL     + Y+                ++  + +G  
Sbjct: 6   EERGFLTIFEDVSGFGAWHRRWCVLS-GNCISYWTYP-----------DDEKRKNPIGRI 53

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES 218
            L+   S        +   A R+T  L+T   + + D+  L    R         L A++
Sbjct: 54  NLANCTSRQIEPANREFC-ARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADT 112

Query: 219 ALDQMDWIEKITGVIASL 236
             ++  W++K+  V+  +
Sbjct: 113 KEERDLWMQKLNQVLVDI 130

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.8 bits (158), Expect = 9e-12
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 17/111 (15%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDS--------------RGLTPLHRCI 587
               G T LH+A +      +ELL++ GA+++A                  G  PL    
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

Query: 588 LRGKAMFAKLLLTRG---ADPRAVNREGKTSLELAVESNFADSEVLAILSD 635
              +      L   G   AD R  +  G T L   V       E    ++ 
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 21/116 (18%)

Query: 531 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYG---ANINATDSRGLTPLHRCI 587
                 + +      G   L LA  +    ++  L + G   A++   DSRG T LH  +
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 588 LRG----------KAMFAKLLLTRGAD-------PRAVNREGKTSLELAVESNFAD 626
                          M+  LLL + A           +N +G + L +A ++    
Sbjct: 185 AIADNTRENTKFVTKMYD-LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 28/109 (25%)

Query: 546 GCTLLHLACDSADIGMLE---LLLQYG-----------ANINATDSRGLTPLHRCILRGK 591
           G T L  A  +   G  +   +LL              +       RG T LH  I R  
Sbjct: 46  GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 592 AMFAKLLLTRGADPRAVNR--------------EGKTSLELAVESNFAD 626
             + +LL+ +GAD  A  R               G+  L LA  +N   
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 16/78 (20%)

Query: 543 DLEGCTLLHLACDSAD---------IGMLELLLQYGANINAT-------DSRGLTPLHRC 586
           D  G T+LH     AD           M +LLL   A +          ++ GL+PL   
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232

Query: 587 ILRGKAMFAKLLLTRGAD 604
              GK    + ++ R   
Sbjct: 233 AKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 22/98 (22%)

Query: 548 TLLHLACDSADI----GMLELLLQYGANINATDSR----GLTPLHRCIL---RGKAMFAK 596
            +L             G+L  LL +   +   + R    G T L + +L    G+     
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 597 LLLTRGADP-----------RAVNREGKTSLELAVESN 623
           +LL                 R V   G+T+L +A+E  
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR 104

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 19/97 (19%)

Query: 546 GCTLLHLACDSADIGMLELLLQYG---ANINATDSRGLTPLHRCILRGK----------A 592
           G   L LA  +    ++  LL+     A++ ATDS G T LH  ++              
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 593 MF------AKLLLTRGADPRAVNREGKTSLELAVESN 623
           M+         L          N +G T L+LA +  
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.5 bits (152), Expect = 4e-11
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 16/97 (16%)

Query: 540 TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS-------------RGLTPLHRC 586
           T +  +G + LH+A +   +  ++LL++ GA+++                  G  PL   
Sbjct: 84  TDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLA 143

Query: 587 ILRGKAMFAKLLLTRG---ADPRAVNREGKTSLELAV 620
               +      LL      A   A +  G T L   V
Sbjct: 144 ACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 533 AGTSEGQT--------MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLH 584
           A  S G T         D+    + L +      + M   L         ++ +GLTPL 
Sbjct: 167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK 226

Query: 585 RCILRGKAMFAKLLLTRGADPRAVN 609
                GK    + +L R     A +
Sbjct: 227 LAAKEGKIEIFRHILQREFSGAAAH 251

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 20/96 (20%), Positives = 26/96 (27%), Gaps = 14/96 (14%)

Query: 543 DLEGCTLLHLACDSADIGMLE---LLLQYG-----------ANINATDSRGLTPLHRCIL 588
              G T L  A  +   G+      LLQ             A       +G + LH  I 
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99

Query: 589 RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF 624
           +      KLL+  GAD                   F
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF 135

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 18/98 (18%), Positives = 27/98 (27%), Gaps = 22/98 (22%)

Query: 548 TLLHLACDSADIGMLELLLQY--------GANINATDSRGLTPLHRCIL---RGKAMFAK 596
             L           L  LL+Y          +     S G T L + +L    G      
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 597 LLLTRGADP-----------RAVNREGKTSLELAVESN 623
            LL    D                 +G ++L +A+E  
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 49/164 (29%)

Query: 91  SAAKGKVQTIRQGYLSKRSSNLRGD-----WKRRFFVL----DSRGMLYYYRKQCSKSSG 141
           S    K    + G+L K + N         +KRRFF L    D    L +Y+ +      
Sbjct: 10  SLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDE------ 63

Query: 142 SGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRF 201
                                                 + ++ L +    V  ++   RF
Sbjct: 64  --------------------------------KISKEPKGSIFLDSCMGVVQNNKVR-RF 90

Query: 202 CFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSSQAPER 244
            F +      +Y L A+S ++  +WI  +  ++     +   E+
Sbjct: 91  AFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEK 134

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 60.0 bits (145), Expect = 4e-11
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 20/135 (14%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
            R+G+L K    ++  WKRR+F+L     LYY+     K                   G+
Sbjct: 6   DREGWLLKLGGRVKT-WKRRWFILT-DNCLYYFEYTTDKEPR----------------GI 47

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
           +   L +     V D +      +   +   +V            +      Y + A S 
Sbjct: 48  IP--LENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSP 105

Query: 220 LDQMDWIEKITGVIA 234
            ++ +W++ I   I+
Sbjct: 106 EEKEEWMKSIKASIS 120

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 37/144 (25%)

Query: 100 IRQGYLSKRSSNLRG-----DWKRRFFVLDSRGM-LYYYRKQCSKSSGSGSQLSSQRNSS 153
            + G L+       G     +W   + VL   G  L +YR+    +  SG   +      
Sbjct: 13  EKSGLLNMTKIAQGGRKLRKNWGPSWVVL--TGNSLVFYREPPPTAPSSGWGPA------ 64

Query: 154 ELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNY 212
                                  S    +V+L  + +      S  R    I +     +
Sbjct: 65  ----------------------GSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEF 102

Query: 213 TLQAESALDQMDWIEKITGVIASL 236
            LQ++   +   W   +  VI  L
Sbjct: 103 LLQSDHETELRAWHRALRTVIERL 126

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 60.6 bits (146), Expect = 6e-11
 Identities = 24/174 (13%), Positives = 48/174 (27%), Gaps = 45/174 (25%)

Query: 100 IRQGYL---------SKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQR 150
            ++G+L          KR       WK+ + VL     LY Y+ +  +++ S        
Sbjct: 4   AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRG-HSLYLYKDKREQTTPS-------- 54

Query: 151 NSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK 210
                                           +++    I +   ++  +  FR+ +   
Sbjct: 55  ---------------------------EEEQPISVNACLIDISYSETKRKNVFRLTTSDC 87

Query: 211 NYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSS 264
               QAE   D + WI+ I                   S     ++   S +  
Sbjct: 88  ECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDLISRRIKEYNNLMSKAEQ 141

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 58.6 bits (141), Expect = 2e-10
 Identities = 16/141 (11%), Positives = 35/141 (24%), Gaps = 40/141 (28%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
             +G+L  + S  R  ++  +  L     L++Y  +                        
Sbjct: 19  YFEGFLLIKRSGYRE-YEHYWTELRGT-TLFFYTDK------------------------ 52

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
                 S  +    D             + +            F ++ P +   L+ E+ 
Sbjct: 53  -----KSIIYVDKLDIVDL---------TCLTEQNSTEKNCAKFTLVLPKEEVQLKTENT 98

Query: 220 LDQMDWIEKITGVIASLLSSQ 240
               +W   I  V    +   
Sbjct: 99  ESGEEWRGFILTVTELSVPQN 119

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 44/149 (29%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
            + G        YL+   +     WK R+  +     L++Y+ +                
Sbjct: 1   GSSGSSGLETSSYLNVLVN---SQWKSRWCSV-RDNHLHFYQDR---------------- 40

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TK 210
                                 +    A+  ++L+   +  D       + FRI+    +
Sbjct: 41  ----------------------NRSKVAQQPLSLVGCEVVPDPSPDH-LYSFRILHKGEE 77

Query: 211 NYTLQAESALDQMDWIEKITGVIASLLSS 239
              L+A+S+ +   W+  +     S  SS
Sbjct: 78  LAKLEAKSSEEMGHWLGLLLSESGSGPSS 106

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 56.9 bits (137), Expect = 4e-10
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 33/144 (22%)

Query: 97  VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELG 156
              I+ G+L +RS  L+  + + ++VL     L+ ++               +++   + 
Sbjct: 4   FTEIKSGFLERRSKFLKS-YSKGYYVLTP-NFLHEFKTA-----------DRKKDLVPVM 50

Query: 157 SGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFR-----IISPTKN 211
           S  LS           H  K           ST   ++  SD +F        II    N
Sbjct: 51  SLALSE-----CTVTEHSRK----------NSTSSPNSTGSDAKFVLHAKQNGIIRRGHN 95

Query: 212 YTLQAESALDQMDWIEKITGVIAS 235
           +  +A+S    M W + +  + ++
Sbjct: 96  WVFKADSYESMMSWFDNLKILTST 119

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 37/141 (26%)

Query: 99  TIRQGYLSKRSSNLRGD----WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSE 154
           TI +  L KRS   +      +K R FVL    + YY  +   K                
Sbjct: 15  TILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKK---------------- 58

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTL 214
              G +   +S      +                           ++ F+++       +
Sbjct: 59  YRKGFID--VSKIKCVEIVKNDDGVIP---------------CQNKYPFQVVHDANTLYI 101

Query: 215 QAESALDQMDWIEKITGVIAS 235
            A S   +  W++K+   I +
Sbjct: 102 FAPSPQSRDLWVKKLKEEIKN 122

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 53.4 bits (128), Expect = 6e-09
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 42/147 (28%)

Query: 101 RQGYLSKRSSNLRGD-------WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSS 153
            +G L ++              W+  + VL  RG L +Y+   + S+G            
Sbjct: 10  MEGMLCRKQEMEAFGKKAANRSWQNVYCVL-RRGSLGFYKDAKAASAGVPYHGE------ 62

Query: 154 ELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNY 212
                                        V+L  +   V  D    +  F++     K Y
Sbjct: 63  ---------------------------VPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEY 95

Query: 213 TLQAESALDQMDWIEKITGVIASLLSS 239
             QA+   +   W+  +   IAS  SS
Sbjct: 96  LFQAKDEAEMSSWLRVVNAAIASGPSS 122

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 53.9 bits (129), Expect = 7e-09
 Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 44/134 (32%)

Query: 102 QGYLS--KRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           + +L   +        +++ + V      L YY+ Q                        
Sbjct: 12  KDHLRIFRPRKLTLKGYRQHWVVFKE-TTLSYYKSQ------------------------ 46

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN----YTLQ 215
                         +        +NL    +  D + S  +FC +++ P+        L+
Sbjct: 47  -------------DEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLR 93

Query: 216 AESALDQMDWIEKI 229
            +       W+   
Sbjct: 94  CQDEQQYARWMAGC 107

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 40/144 (27%)

Query: 100 IRQGYLS--------KRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
            + G L         KR    +  W   + VL   G+L +++   + ++G   Q S    
Sbjct: 9   DKAGVLHRTKTADKGKRLRK-KH-WSASWTVL-EGGVLTFFKDSKTSAAGGLRQPSKF-- 63

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKV-DADQSDLRFCFRIISPT- 209
                                    S   +TV L  +T+     D+S  +    + S   
Sbjct: 64  -------------------------STPEYTVELRGATLSWAPKDKSSRKNVLELRSRDG 98

Query: 210 KNYTLQAESALDQMDWIEKITGVI 233
             Y +Q +S      W + I   I
Sbjct: 99  SEYLIQHDSEAIISTWHKAIAQGI 122

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 15/146 (10%), Positives = 42/146 (28%), Gaps = 40/146 (27%)

Query: 98  QTIRQGYLSKRSSNLRGD-------WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQR 150
               +GY++++              W + +    +  + +Y  ++  KS+   +      
Sbjct: 7   GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELT------ 60

Query: 151 NSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT- 209
                                          + +L  + I++ +D +  +   R+     
Sbjct: 61  --------------------------FRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANG 94

Query: 210 KNYTLQAESALDQMDWIEKITGVIAS 235
             + LQA    +   W+  +     S
Sbjct: 95  ALFLLQAHDDTEMSQWVTSLKAQSDS 120

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 54.1 bits (129), Expect = 3e-08
 Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 38/205 (18%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
            + GYL K  S       +RFFVL +              +G  ++L    N  +     
Sbjct: 11  RKVGYLRKPKS-----MHKRFFVLRAASE-----------AGGPARLEYYENEKKWRHK- 53

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
                            SA + ++ L +         S  +    + +  +++ + A+S 
Sbjct: 54  ----------------SSAPKRSIPLESCFNINKRADSKNKHLVALYTRDEHFAIAADSE 97

Query: 220 LDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYT 279
            +Q  W + +  +      ++A       + +G+G    +   SS      +  +  +  
Sbjct: 98  AEQDSWYQALLQLH-----NRAKGHHDGAAALGAGGGGGSCSGSSGLGEAGEDLSYGDVP 152

Query: 280 SERNLTSAYHERQSRGSQQQRSCVK 304
                   +          Q   + 
Sbjct: 153 PGPAFKEVWQVILKPKGLGQTKNLI 177

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A Length = 265

 Score = 53.4 bits (127), Expect = 6e-08
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 1   MDAHLRYFKQGYELLHQ-MEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQID 55
           M A + +FK G E L++ +E ++  + T  Q  R   + +   + + +++ +   D
Sbjct: 204 MQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASD 259

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 50.4 bits (120), Expect = 7e-08
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 40/143 (27%)

Query: 101 RQGYLSKRSSNLRGD------WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSE 154
            +G L +++    G       W R + VL    +LYY  K    +               
Sbjct: 3   MEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRK------------ 50

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN--Y 212
                                KS     V+++   +++  D  +    F++ +P K   Y
Sbjct: 51  -------------------HYKSTPGKKVSIVGWMVQL-PDDPEHPDIFQLNNPDKGNVY 90

Query: 213 TLQAESALDQMDWIEKITGVIAS 235
             Q  S    + W + +     S
Sbjct: 91  KFQTGSRFHAILWHKHLDDACKS 113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 71/558 (12%), Positives = 140/558 (25%), Gaps = 161/558 (28%)

Query: 174 DEKSAARHTVNLLTST-----IKVDADQSDLRFCFRII--SPTKNYTLQAESALDQ-MDW 225
           D K       ++L+       I      S     F  +     +      E  L     +
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 226 IEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLT 285
           +        S + ++  +  + T        R  +D+  F              ++ N++
Sbjct: 94  L-------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--------------AKYNVS 132

Query: 286 SAYHERQSRGS-QQQRS-----------CVKSEKPIDVLR---RVC-----------GND 319
                 + R +  + R              K+   +DV       C            N 
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 320 RCAD---------CGAPEPDWASLNLGV----LVCIECSGVHRNLGVHISKVRSL-TLDV 365
              +             +P+W S +       L         R L         L  L  
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL- 251

Query: 366 KVWEPSVI--------TLFQSLGNAFANSVWEELLQSRSAFHVD--LTPP---------- 405
            V               L  +      + +        S  H    LTP           
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 406 SLHKSDKPQLLLMGKPSHSDSI--SVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEG 463
                D P+ +L   P     I  S+++        + +   K      L ++       
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK------LTTIIESSLNV 365

Query: 464 VRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLE--------RSSS 515
           +   + + ++  +  F    +        I ++ L  +++  +    +           S
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH--------IPTILL--SLIWFDVIKSDVMVVVNKLHKYS 415

Query: 516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGML--ELLLQYGANIN 573
            +     + + S             +  +     L L     +   L   ++  Y  NI 
Sbjct: 416 LVEKQPKESTIS-------------IPSI----YLELKVKLENEYALHRSIVDHY--NIP 456

Query: 574 AT-DSRGLTPL------------H-RCILRGK--AMFAKLLLTRGADPRAVNREGKTSLE 617
            T DS  L P             H + I   +   +F  + L    D R +  E K  + 
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL----DFRFL--EQK--IR 508

Query: 618 LAVESNFADSEVLAILSD 635
               +  A   +L  L  
Sbjct: 509 HDSTAWNASGSILNTLQQ 526

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 80/644 (12%), Positives = 184/644 (28%), Gaps = 188/644 (29%)

Query: 10  QGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSP 69
               L   +     +++    +   R NY+   L   ++  +RQ               P
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQ---------------P 105

Query: 70  NGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGML 129
           +      I       +    Q  AK  V   R     K    L      +  ++D  G+ 
Sbjct: 106 SMMTRMYI--EQRDRLYNDNQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLID--GV- 158

Query: 130 YYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTST 189
                   K+  +     S +   ++   +   WL+       +  ++       L    
Sbjct: 159 ----LGSGKTWVALDVCLSYKVQCKMDFKIF--WLNL---KNCNSPETVLEMLQKL---- 205

Query: 190 IKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCL--- 246
                        ++I     N+T +++ + +    I  I   +  LL S+  E CL   
Sbjct: 206 ------------LYQI---DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 247 -------------------PTSPMGSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSA 287
                               T+       R          +DF  AA   + S  + +  
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTT-------RFKQV------TDFLSAATTTHISLDHHSMT 297

Query: 288 YHERQSRGSQQQRSCVKSEKPIDVLRRVCGND--RCADCGA---PEPD----WASLNLGV 338
               + +        +   +P D+ R V   +  R +               W  +N   
Sbjct: 298 LTPDEVKS--LLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 339 L-----VCIEC--SGVHRNL---------GVHISKVRSLTLDVKVWEPSVITLFQSLGNA 382
           L       +       +R +           HI    ++ L + +W   + +    + N 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSL-IWFDVIKSDVMVVVNK 410

Query: 383 FANSVWEELLQSRS--------AFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKF- 433
                   L++ +         + +++L    +   ++  L       H   +   + + 
Sbjct: 411 LHKY---SLVEKQPKESTISIPSIYLELK---VKLENEYAL-------HRSIV---DHYN 454

Query: 434 IHAKYAEKLFVRKPKDNQYLHS-VAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSC 492
           I   +     +    D  Y +S + H + + +   ++  ++R +  F +D   + +++  
Sbjct: 455 IPKTFDSDDLIPPYLDQ-YFYSHIGHHL-KNIEHPERMTLFRMV--F-LDFRFLEQKIRH 509

Query: 493 ISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHL 552
            S+   A   +LN    L+     +  N                  + ++ +        
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-------------RLVNAI-------- 548

Query: 553 ACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK 596
                    L+ L +   N+  +        +  +LR  A+ A+
Sbjct: 549 ---------LDFLPKIEENLICSK-------YTDLLR-IALMAE 575

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 50.7 bits (120), Expect = 5e-07
 Identities = 28/224 (12%), Positives = 56/224 (25%), Gaps = 47/224 (20%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGD-----------WKRRFFVLDSRGMLYYYRKQCSKSS 140
            +K +    + G+L  +                  WK+ +  L     L +Y      S+
Sbjct: 4   GSKEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKG-CTLLFYETYGKNST 62

Query: 141 GSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR 200
                                             + SA R  +    S ++   +     
Sbjct: 63  E---------------------------------QNSAPRCALFAEDSIVQSVPEHPKKE 89

Query: 201 FCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSSQAPER-CLPTSPMGSGHHRS 258
             F + +     Y  QA S  D  +W+  I    ASL + +  +   +      +     
Sbjct: 90  HVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAKKHGKEDTVRLLKSQTRSLLQ 149

Query: 259 ASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSC 302
             D  S      +         +         RQ   + ++   
Sbjct: 150 KIDMDSKMKKMAELQLSVVSDPKNRKAIENQIRQWEQNLEKFHM 193

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 49.9 bits (118), Expect = 8e-07
 Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 51/233 (21%)

Query: 98  QTIRQGYLSKRSSNLRGD-----------WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQL 146
              + G L+ ++  +              WK  +  L     L++Y              
Sbjct: 10  TVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKG-CTLFFYETDGRSGI------ 62

Query: 147 SSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRII 206
                                      D  S  +H V +  S ++   +     F F + 
Sbjct: 63  ---------------------------DHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLS 95

Query: 207 SPT-KNYTLQAESALDQMDWIEKITGVIASLLSSQAPER----CLPTSPMGSGHHRSASD 261
           +     +  Q  S  +  +WI  I    A+ ++    +      L +            D
Sbjct: 96  NSLGDAFLFQTTSQTELENWITAIHSACAAAVARHHHKEDTLRLLKSEIKKLEQKID-MD 154

Query: 262 SSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPIDVLRR 314
               +  +   ++V +   ++ +       +    Q Q    +    +  L+ 
Sbjct: 155 EKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLFRFRCYLASLQG 207

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 23/150 (15%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
            + G    +   +L  R +     W + + VL   G+L  Y+              +Q+N
Sbjct: 1   GSSGSSGIVMADWLKIRGT--LKSWTKLWCVL-KPGVLLIYK--------------TQKN 43

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN 211
              +G+ LL+   +         +        + L  +I              I  P  +
Sbjct: 44  GQWVGTVLLN---ACEIIERPSKKDGFCFKLFHPLEQSIWAVKG-PKGEAVGSITQPLPS 99

Query: 212 --YTLQAESALDQMDWIEKITGVIASLLSS 239
               ++A S  D   W++ +   + S  SS
Sbjct: 100 SYLIIRATSESDGRCWMDALELALKSGPSS 129

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 42/136 (30%)

Query: 102 QGYLSKRSSNLRGD-------WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSE 154
           +G+L+++      +       W   + V++++ M +Y   + + S               
Sbjct: 2   EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYH---------- 51

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYT 213
                                   +   V+L  +  +V  D    +  F++       Y 
Sbjct: 52  ------------------------SEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYL 87

Query: 214 LQAESALDQMDWIEKI 229
            QA+   +   WI+ I
Sbjct: 88  FQAKDDEEMNTWIQAI 103

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score = 47.7 bits (113), Expect = 7e-06
 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 6/134 (4%)

Query: 192 VDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPM 251
                  + +  +I +      L A S  ++ +W   ++  +     +QA      +  +
Sbjct: 295 SRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEI 354

Query: 252 GSGHHRSASDSSSFESSDFDHAAVEEYTSERNLTSAYHERQSRGSQQQRSCVKSEKPI-- 309
                 S  +                   + +LT   H   + G    R+C +++ P+  
Sbjct: 355 RERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKY 414

Query: 310 --DVLRRVCGNDRC 321
             D + +VC  D C
Sbjct: 415 LKDRMAKVC--DGC 426

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 8/67 (11%)

Query: 546 GCTLLHLACDSADIGMLELL--------LQYGANINATDSRGLTPLHRCILRGKAMFAKL 597
           G  +L       D  +L+ +        ++  A            L   +  G      L
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 598 LLTRGAD 604
           LL+  + 
Sbjct: 338 LLSIPSV 344

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 5/79 (6%)

Query: 548 TLLHLACDSADIGMLE---LLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
            +  +A  +     L+   LLL     +    +            G       L      
Sbjct: 94  VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT 153

Query: 605 PRA--VNREGKTSLELAVE 621
                +  E   +  LA E
Sbjct: 154 EIMAMIQAENYHAFRLAAE 172

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 9/79 (11%), Positives = 17/79 (21%), Gaps = 4/79 (5%)

Query: 545 EGCTLLHLACDSADIGMLELLLQYGANINATD--SRGLTPLHRCILRGKAMFAKLLLTRG 602
           E      LA ++  + +L  L +           +            G       L    
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 186

Query: 603 ADPRA--VNREGKTSLELA 619
                  +  E   +   A
Sbjct: 187 PTEATAMIQAENYYAFRWA 205

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 45/132 (34%)

Query: 103 GYLSKRSSNLRGDWKRRFFVL--DSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
           G L    S     W   +  +      +L+                              
Sbjct: 12  GPLRLSES--GETWSEVWAAIPMSDPQVLHLQGGS------------------------- 44

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVD--ADQSDLRFCFRIISPTKNYTLQAES 218
                        D +     T+ L +  + V    ++ D    +++    +++ L A S
Sbjct: 45  ------------QDGR--LPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLSASS 90

Query: 219 ALDQMDWIEKIT 230
           A  Q  W+E ++
Sbjct: 91  AELQQQWLETLS 102

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 31/207 (14%), Positives = 58/207 (28%), Gaps = 32/207 (15%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           +  G L K  SN     +   F+ +    L         +  SGS+      S       
Sbjct: 254 LHSGKLYKTKSNK----ELHGFLFND--FLLLTYMVKQFAVSSGSEKLFSSKS------- 300

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
                        + +    +  + L    +K+  D S     F I    + YTL+ ++ 
Sbjct: 301 -------------NAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNI 347

Query: 220 LDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSASDSSSFESSDFDHAAVEEYT 279
            ++  W++KI          Q  +                +            A   +  
Sbjct: 348 NERTAWVQKIKAASE-----QYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKAC 402

Query: 280 SERNLTSAYHERQSRGSQQQRSCVKSE 306
                ++ Y E  S GSQ   +    +
Sbjct: 403 KPNGKSNPYCEI-SMGSQSYTTRTIQD 428

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Length = 113

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS 238
                 L    +    D   ++  F+++   ++   QAE+A  + +W+E +     +L  
Sbjct: 52  YNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD 111

Query: 239 SQ 240
            +
Sbjct: 112 KR 113

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Length = 240

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYE 39
           ++A L Y +Q  E+L +++  +   ++ A  S  R  Y+
Sbjct: 203 IEAALDYHRQSTEILQELQSKLQMRISAA-SSVPRREYK 240

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Length = 256

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYE 39
           + A L Y KQ  ++L Q+   + + +  A  S+ R  Y+
Sbjct: 219 VQAQLEYHKQAVQILQQVTVRLEERIRQA-SSQPRREYQ 256

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 28/227 (12%), Positives = 63/227 (27%), Gaps = 55/227 (24%)

Query: 8   FKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNG 67
            KQ    L  ++  + ++ + +   R  S       +++M+  +  I + +    N    
Sbjct: 176 LKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDG- 234

Query: 68  SPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRG 127
              G  I                       + I +G L++  +        R   L    
Sbjct: 235 -WEGKDIGQCCN------------------EFIMEGTLTRVGAK-----HERHIFLFDGL 270

Query: 128 MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLT 187
           M+      C  + G      +      L                        +    +  
Sbjct: 271 MIC-----CKSNHGQPRLPGASNAEYRL------------------------KEKFFMRK 301

Query: 188 STIKVDADQSDLRFCFRII-SPTKNYTLQAESALDQMDWIEKITGVI 233
             I    D ++ +  F II     +    A+SA ++ +W+  +  + 
Sbjct: 302 VQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ 348

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 97  VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ 135
           V  +++G+L KR   ++  W+ R+F+L + G    Y+++
Sbjct: 4   VAIVKEGWLHKRGEYIK-TWRPRYFLLKNDGTFIGYKER 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	638
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	100.0
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	100.0
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	100.0
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	100.0
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	100.0
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	100.0
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	100.0
2owa_A	138	Arfgap-like finger domain containing protein; zinc	99.98
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	99.97
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.97
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	99.97
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	99.96
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.94
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.89
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.88
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.88
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.88
2etb_A	256	Transient receptor potential cation channel subfam	99.87
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.87
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.87
2rfa_A	232	Transient receptor potential cation channel subfa	99.87
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.87
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.87
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.87
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.87
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.87
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.86
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.86
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.86
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.85
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.85
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.85
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.85
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.85
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.85
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.85
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.85
2pnn_A	273	Transient receptor potential cation channel subfa	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.84
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.84
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.84
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.84
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.84
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.84
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.84
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.83
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.83
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.83
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.83
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.83
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.83
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.82
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.82
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.82
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.82
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.82
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.82
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.82
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.81
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.81
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.81
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.81
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.81
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.81
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.8
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.8
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.8
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.8
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.8
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.8
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.8
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.8
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.79
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.79
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.79
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.79
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.79
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.79
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.79
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.79
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.79
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.79
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.79
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.78
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.78
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.78
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.78
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.78
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.77
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.77
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.77
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.77
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.77
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.77
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.77
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.76
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.76
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.76
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.76
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.76
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.76
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.76
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.76
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.75
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.75
2rfa_A	232	Transient receptor potential cation channel subfa	99.75
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.75
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.75
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.75
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.75
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.75
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.75
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.74
2etb_A	256	Transient receptor potential cation channel subfam	99.74
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.74
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.74
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.74
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.74
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.74
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.74
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.74
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.74
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.74
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.74
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.74
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.74
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.74
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.73
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.73
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.73
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.72
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.72
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.72
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.71
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.71
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.71
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.71
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.71
2pnn_A	273	Transient receptor potential cation channel subfa	99.71
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.7
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.7
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.7
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.69
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.69
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.69
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.68
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.67
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.66
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.66
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.66
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.65
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.63
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.61
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.61
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.6
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.6
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.59
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.59
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.58
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.56
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.55
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.53
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.52
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.51
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.49
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.46
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.43
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.43
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.38
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.37
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.36
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.33
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.23
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.21
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.21
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	99.09
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.02
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.02
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.96
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	98.88
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	98.83
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.59
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	98.4
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	98.26
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	98.06
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.02
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.01
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	98.0
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	97.95
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.9
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.88
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.84
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	97.76
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	97.7
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	97.69
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	97.64
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	97.6
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	97.45
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	97.41
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	97.38
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	97.27
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	97.24
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.15
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	97.13
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	97.11
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	96.92
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	96.71
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	95.91
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	94.89
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	93.97
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	93.89
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	91.72

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=100.00  E-value=1.5e-55  Score=469.61  Aligned_cols=286  Identities=34%  Similarity=0.506  Sum_probs=221.1

Q ss_pred             ccCCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhch
Q 006616          302 CVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGN  381 (638)
Q Consensus       302 ~~~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN  381 (638)
                      ..+.+++++.|++.|+|+.|||||+++|+|+|+|||||+|++||||||+||+||||||||+||  .|+++++++|+.+||
T Consensus        29 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d--~w~~~~~~~~~~~gn  106 (368)
T 3jue_A           29 PGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCELGN  106 (368)
T ss_dssp             ---CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHHSCH
T ss_pred             hhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecc--cccHHHHHHHHHHcc
Confidence            345788999999999999999999999999999999999999999999999999999999999  799999999999999


Q ss_pred             HHHHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCccccc-----cc
Q 006616          382 AFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLH-----SV  456 (638)
Q Consensus       382 ~~~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~~~~~-----~~  456 (638)
                      ..+|+|||+.+++.                     ...||.++++...|++||++||++++|+.+........     ..
T Consensus       107 ~~~n~~~e~~~~~~---------------------~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~~~~~~~~~~~~~r  165 (368)
T 3jue_A          107 VIINQIYEARVEAM---------------------AVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPR  165 (368)
T ss_dssp             HHHHHHHTTTTTTT---------------------TCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC-------------
T ss_pred             HHHHHHHHhhcccc---------------------cCcCCCCCCCHHHHHHHHHHHHHhhcccccchhhhhccccccCcc
Confidence            99999999999862                     14689999999999999999999999998865322100     00


Q ss_pred             ccceec-ccccccchhhhhhh-cccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccC-Cccccccccc
Q 006616          457 AHQIWE-GVRTNDKKAVYRHI-VNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSD-RSSSGSLNLA  533 (638)
Q Consensus       457 ~~~L~~-Av~~~d~~~v~~lL-l~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~-~~~~~~~lL~  533 (638)
                      .+.... .....+.....+.. .....+++.....                         ..|+.+... +....+..|+
T Consensus       166 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------t~L~~Aa~~~g~~~~v~~LL  220 (368)
T 3jue_A          166 GQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPG-------------------------ALLFRASGHPPSLPTMADAL  220 (368)
T ss_dssp             -------------------------------CCHH-------------------------HHHHHHTSSSCCHHHHHHHH
T ss_pred             cCCCCCCCcccCCCCccccccccccccccccCCCC-------------------------cHHHHHHHccCCHHHHHHHH
Confidence            000000 00000000000000 0111222221111                         122233333 4555666667


Q ss_pred             CCCCCCCcCC--CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCC
Q 006616          534 GTSEGQTMDD--LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE  611 (638)
Q Consensus       534 ~~~~~~~~~d--~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~  611 (638)
                      ..|++++..+  ..|.||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+.+++++||++|++++.+|.+
T Consensus       221 ~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~  300 (368)
T 3jue_A          221 AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE  300 (368)
T ss_dssp             HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCC
Confidence            7777777777  78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616          612 GKTSLELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       612 g~TpL~~A~~~g~~d~eiv~lLle~g  637 (638)
                      |.||||+|+..|+  .+++++|++++
T Consensus       301 G~TpL~~A~~~g~--~~iv~lLl~~~  324 (368)
T 3jue_A          301 GRDPLTIAMETAN--ADIVTLLRLAK  324 (368)
T ss_dssp             SCCHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             CCCHHHHHHHCCC--HHHHHHHHHcC
Confidence            9999999999998  89999998764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=100.00  E-value=1.1e-53  Score=439.50  Aligned_cols=256  Identities=35%  Similarity=0.562  Sum_probs=230.4

Q ss_pred             CchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       305 ~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      .+++++.|++.|||+.|||||+++|+|+|+|||+++|++||||||+||+|||+||||+||  .|+++++.+|..+||..+
T Consensus         4 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d--~~~~~~l~~~~~~GN~~~   81 (278)
T 1dcq_A            4 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VLGTSELLLAKNIGNAGF   81 (278)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCGGGGHHHHHSCHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecC--CCCHHHHHHHHHcCcHHH
Confidence            457889999999999999999999999999999999999999999999999999999999  799999999999999999


Q ss_pred             HHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCcccccccccceeccc
Q 006616          385 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGV  464 (638)
Q Consensus       385 n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av  464 (638)
                      |+|||+.++...                     ..||.+.+++..++.||+.||..+.|..+.....  ......|+.|+
T Consensus        82 n~i~e~~l~~~~---------------------~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~--~~~l~~l~~a~  138 (278)
T 1dcq_A           82 NEIMECCLPSED---------------------PVKPNPGSDMIARKDYITAKYMERRYARKKHADT--AAKLHSLCEAV  138 (278)
T ss_dssp             HHHHTTTCCSSS---------------------CCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSH--HHHHHHHHHHH
T ss_pred             HHHHHhhCChhh---------------------cCCCCCCCCHHHHHHHHHHHHHHhhccccccccc--chhhhhhhhHh
Confidence            999999887621                     3589999999999999999999999998866544  23457899999


Q ss_pred             ccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCC
Q 006616          465 RTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL  544 (638)
Q Consensus       465 ~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~  544 (638)
                      ..+|...+..+| ..|+|++...                                                  .++..|.
T Consensus       139 ~~~d~~~~~~ll-~~g~~~~~~~--------------------------------------------------~l~~~~~  167 (278)
T 1dcq_A          139 KTRDIFGLLQAY-ADGVDLTEKI--------------------------------------------------PLANGHE  167 (278)
T ss_dssp             HTTCHHHHHHHH-HTTCCTTSBC--------------------------------------------------CCSSCSS
T ss_pred             hhcccHHHHHHH-Hhhcchhhhc--------------------------------------------------ccccccc
Confidence            999998876655 7788876431                                                  1223356


Q ss_pred             CCCcHHHHHHHh---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHH
Q 006616          545 EGCTLLHLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE  621 (638)
Q Consensus       545 ~G~TpLh~Aa~~---g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~  621 (638)
                      .|+||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++||++||+++.+|.+|.||||+|+.
T Consensus       168 ~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  247 (278)
T 1dcq_A          168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR  247 (278)
T ss_dssp             TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHH
Confidence            799999999999   89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHhhCCC
Q 006616          622 SNFADSEVLAILSDSHG  638 (638)
Q Consensus       622 ~g~~d~eiv~lLle~ga  638 (638)
                      .|+  .+++++|+++||
T Consensus       248 ~~~--~~~v~~Ll~~ga  262 (278)
T 1dcq_A          248 LKH--EHCEELLTQALS  262 (278)
T ss_dssp             TTC--HHHHHHHHHHHT
T ss_pred             cCC--HHHHHHHHHcCC
Confidence            998  899999999875

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=100.00  E-value=2.2e-53  Score=472.71  Aligned_cols=252  Identities=33%  Similarity=0.539  Sum_probs=227.3

Q ss_pred             CchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       305 ~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      ++.+++.+++.|||..|||||+++|+|+|+|+|||+|++||||||+||+||||||||+||  .|+++++.+|+.+||..+
T Consensus        10 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld--~w~~~~~~l~~~~GN~~a   87 (497)
T 3lvq_E           10 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLALNMGNTSF   87 (497)
T ss_dssp             HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCGGGGTTTTTCCHHHH
T ss_pred             HHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccC--CCCHHHHHHHHHHhhHHH
Confidence            467889999999999999999999999999999999999999999999999999999999  799999999999999999


Q ss_pred             HHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCcccccccccceeccc
Q 006616          385 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGV  464 (638)
Q Consensus       385 n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av  464 (638)
                      |.+||+.++...                     ..+|.+.++...++.||++||+++.|..+.....      +.|+.|+
T Consensus        88 n~i~E~~lp~~~---------------------~~kP~~~s~~~~re~fIraky~~~~f~~~~~~~~------~~L~~A~  140 (497)
T 3lvq_E           88 NEVMEAQLPSHG---------------------GPKPSAESDMGTRRDYIMAKYVEHRFARRCTPEP------QRLWTAI  140 (497)
T ss_dssp             HHHHTTTCCSSS---------------------CSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC-CH------HHHHHHH
T ss_pred             HHHHHhhccccc---------------------CCCCCCcCcHHHHHHHHHHHhhcccccccccccH------HHHHHHH
Confidence            999999998621                     3688889999999999999999999998765443      6799999


Q ss_pred             ccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCC
Q 006616          465 RTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL  544 (638)
Q Consensus       465 ~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~  544 (638)
                      ..|+...|..+| +.|+|+|......                                                  ..|.
T Consensus       141 ~~g~~~~v~~ll-~~g~~~n~~~~~~--------------------------------------------------~~~~  169 (497)
T 3lvq_E          141 CNRDLLSVLEAF-ANGQDFGQPLPGP--------------------------------------------------DAQA  169 (497)
T ss_dssp             HHTCHHHHHHHH-HTTCCSSSCBCCS--------------------------------------------------SSCC
T ss_pred             hccCHHHHHHHH-hhcccccCCCCCc--------------------------------------------------cccc
Confidence            999999887665 8899998653211                                                  1256


Q ss_pred             CCCcHHHHHHH---hCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHH
Q 006616          545 EGCTLLHLACD---SADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE  621 (638)
Q Consensus       545 ~G~TpLh~Aa~---~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~  621 (638)
                      .|.||||+||.   .|+.++|++||++|+++|.+|..|+||||+|+..|+.++|++||++||+++.+|.+|.||||+|+.
T Consensus       170 ~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  249 (497)
T 3lvq_E          170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK  249 (497)
T ss_dssp             SCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            79999999976   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHhhCCC
Q 006616          622 SNFADSEVLAILSDSHG  638 (638)
Q Consensus       622 ~g~~d~eiv~lLle~ga  638 (638)
                      .|+  .+++++|+++||
T Consensus       250 ~~~--~~~~~~Ll~~ga  264 (497)
T 3lvq_E          250 KHH--KECEELLEQAQA  264 (497)
T ss_dssp             TTC--HHHHHHHHHTCC
T ss_pred             cCC--HHHHHHHHHhCC
Confidence            998  899999999986

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.9e-53  Score=437.99  Aligned_cols=252  Identities=33%  Similarity=0.538  Sum_probs=221.5

Q ss_pred             CchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       305 ~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      .+.+++.|++.|+|+.|+|||+++|+|+|+|+|||+|++|||+||+||+|||||||++||  .|+++++.+|..+||..+
T Consensus        29 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD--~w~~~~l~~~~~~GN~~~  106 (301)
T 2b0o_E           29 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLALNMGNTSF  106 (301)
T ss_dssp             HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcC--CCCHHHHHHHHHcCCHHH
Confidence            456788899999999999999999999999999999999999999999999999999999  799999999999999999


Q ss_pred             HHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCCCcccccccccceeccc
Q 006616          385 NSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPKDNQYLHSVAHQIWEGV  464 (638)
Q Consensus       385 n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~~~~~~~~~~~~L~~Av  464 (638)
                      |++||+.++...                     ..||.+.++...|+.||+.||..+.|..+....      .+.|+.|+
T Consensus       107 n~i~E~~l~~~~---------------------~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~~~~~------~~~L~~A~  159 (301)
T 2b0o_E          107 NEVMEAQLPSHG---------------------GPKPSAESDMGTRRDYIMAKYVEHRFARRCTPE------PQRLWTAI  159 (301)
T ss_dssp             HHHHTTTCCSSS---------------------CSCCCTTCCHHHHHHHHHHHHTSCTTSCCCC-C------HHHHHHHH
T ss_pred             HHHHHHhhhhcc---------------------CCCCCCcccHHHHHHHHHHHHHhhhhhcccCch------HHHHhhhh
Confidence            999999987621                     368888889999999999999999998765432      35799999


Q ss_pred             ccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCC
Q 006616          465 RTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL  544 (638)
Q Consensus       465 ~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~  544 (638)
                      ..++...|..+| ..|+|+|......                                                  ..|.
T Consensus       160 ~~g~~~~v~~ll-~~g~d~~~~~~~~--------------------------------------------------~~~~  188 (301)
T 2b0o_E          160 CNRDLLSVLEAF-ANGQDFGQPLPGP--------------------------------------------------DAQA  188 (301)
T ss_dssp             HTTCHHHHHHHH-HTTCCTTSCEECS--------------------------------------------------SSCS
T ss_pred             hccCHHHHHHHH-hcCCcccccCCCc--------------------------------------------------ccCC
Confidence            999999887766 8899987532110                                                  1245


Q ss_pred             CCCcHHHHHHHh---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHH
Q 006616          545 EGCTLLHLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE  621 (638)
Q Consensus       545 ~G~TpLh~Aa~~---g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~  621 (638)
                      .|.||||+|+..   |+.+++++||++|+++|.+|..|+||||+|+..|+.++|++||++|++++.+|..|.|||++|+.
T Consensus       189 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~  268 (301)
T 2b0o_E          189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK  268 (301)
T ss_dssp             CEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            789999999987   88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHhhCCC
Q 006616          622 SNFADSEVLAILSDSHG  638 (638)
Q Consensus       622 ~g~~d~eiv~lLle~ga  638 (638)
                      .|+  .+++++|+++|+
T Consensus       269 ~~~--~~iv~~Ll~~ga  283 (301)
T 2b0o_E          269 KHH--KECEELLEQAQA  283 (301)
T ss_dssp             HTC--HHHHHHHHHHHH
T ss_pred             cCC--HHHHHHHHHhcC
Confidence            988  889999988763

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=281.85  Aligned_cols=119  Identities=39%  Similarity=0.719  Sum_probs=108.2

Q ss_pred             cCCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchH
Q 006616          303 VKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA  382 (638)
Q Consensus       303 ~~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~  382 (638)
                      .+++++++.|++.|+|+.|||||+++|+|+|+|||||||++||||||+||+|||+||||+||  .|++++|++|+.+||.
T Consensus        12 e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld--~w~~~~l~~m~~~GN~   89 (134)
T 2iqj_A           12 DRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQEMGNG   89 (134)
T ss_dssp             -CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeecccc--CCCHHHHHHHHHHchH
Confidence            45678899999999999999999999999999999999999999999999999999999999  7999999999999999


Q ss_pred             HHHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCC
Q 006616          383 FANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK  448 (638)
Q Consensus       383 ~~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~  448 (638)
                      .+|++||+.+|+.                      ..+|.+   .+.+|.||++||++++|+.+..
T Consensus        90 ~an~~~e~~lp~~----------------------~~~P~~---~~~~e~fIr~KY~~k~f~~~~~  130 (134)
T 2iqj_A           90 KANRLYEAYLPET----------------------FRRPQI---DPAVEGFIRDKYEKKKYMDRSL  130 (134)
T ss_dssp             HHHHHHTTTCCSS----------------------CCCCCS---HHHHHHHHHHHHTSCTTCCTTC
T ss_pred             HHHHHHHhcCCcc----------------------CCCCCc---hHHHHHHHHHHHhCCeeeCCcc
Confidence            9999999998762                      346654   3578999999999999998764

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=5.5e-38  Score=282.18  Aligned_cols=117  Identities=41%  Similarity=0.752  Sum_probs=107.1

Q ss_pred             CCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHH
Q 006616          304 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF  383 (638)
Q Consensus       304 ~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~  383 (638)
                      +.+.+++.|++.|+|+.|||||+++|+|+|+|||||||++||||||+||+||||||||+||  .|++++|++|+.+||..
T Consensus        15 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld--~w~~~~l~~m~~~GN~~   92 (141)
T 2crr_A           15 QHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTAEQIQCMQDMGNTK   92 (141)
T ss_dssp             CHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSS--CCCHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCC--CCCHHHHHHHHHHccHH
Confidence            4567889999999999999999999999999999999999999999999999999999999  79999999999999999


Q ss_pred             HHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCC
Q 006616          384 ANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKP  447 (638)
Q Consensus       384 ~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~  447 (638)
                      +|++||+.+|+.                      ..+|.++   ..+|.||++||++++|+.+.
T Consensus        93 an~~~e~~lp~~----------------------~~~P~~~---~~~e~fIr~KY~~k~f~~~~  131 (141)
T 2crr_A           93 ARLLYEANLPEN----------------------FRRPQTD---QAVEFFIRDKYEKKKYYDKN  131 (141)
T ss_dssp             HHHHGGGSCCTT----------------------CCCCCSH---HHHHHHHHHHHTSCTTCCCG
T ss_pred             HHHHHHhcCCcc----------------------cCCCCch---HHHHHHHHHHHhcCcccCCC
Confidence            999999998862                      3466543   56899999999999999764

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=100.00  E-value=9.5e-37  Score=273.80  Aligned_cols=120  Identities=27%  Similarity=0.566  Sum_probs=106.6

Q ss_pred             CCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHH
Q 006616          304 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF  383 (638)
Q Consensus       304 ~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~  383 (638)
                      ++++.++.|++.|||+.|||||+++|+|+|+|||||||++||||||+||+| ||||||+||  .|++++|++|+.+||..
T Consensus        11 ~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld--~w~~~~l~~m~~~GN~~   87 (140)
T 2olm_A           11 KHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMT--TFTQQEIEFLQKHGNEV   87 (140)
T ss_dssp             HHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTC--CCCHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCC--CCCHHHHHHHHHhccHH
Confidence            356788889999999999999999999999999999999999999999997 999999999  79999999999999999


Q ss_pred             HHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCC
Q 006616          384 ANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK  448 (638)
Q Consensus       384 ~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~  448 (638)
                      +|++||+.+++..                     ..+|.+.+. ..++.||++||++++|+.++.
T Consensus        88 an~~~e~~~~~~~---------------------~~~P~~~d~-~~~~~fIr~KYe~k~f~~~~~  130 (140)
T 2olm_A           88 CKQIWLGLFDDRS---------------------SAIPDFRDP-QKVKEFLQEKYEKKRWYVPPE  130 (140)
T ss_dssp             HHHHHTTTCCTTT---------------------SCCCCTTCH-HHHHHHHHHHHTSCTTCCCHH
T ss_pred             HHHHHHhhCCccc---------------------CCCCCCCCH-HHHHHHHHHHHcCCeeeCCcc
Confidence            9999999987621                     245655443 567789999999999997654

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=99.98  E-value=4.7e-33  Score=248.14  Aligned_cols=110  Identities=29%  Similarity=0.532  Sum_probs=95.9

Q ss_pred             chHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHH
Q 006616          306 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN  385 (638)
Q Consensus       306 ~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n  385 (638)
                      +.+++.|++.|+|+.|+|||+++|+|+|+|||||+|++||||||+||+||||||||+||  .|+++++++|+.+||..+|
T Consensus        24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD--~w~~~~l~~m~~~GN~~an  101 (138)
T 2owa_A           24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD--KFTPIQLVRMDIGGNGRAR  101 (138)
T ss_dssp             HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTS--CCCHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcC--cCCHHHHHHHHhhccHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999  7999999999999999999


Q ss_pred             HHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhh
Q 006616          386 SVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLF  443 (638)
Q Consensus       386 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~f  443 (638)
                      ++||+....                         .| ..+..+..+.++..+|.++.-
T Consensus       102 ~~~e~~~~~-------------------------~~-~~~~~~kY~s~~a~~Y~~kL~  133 (138)
T 2owa_A          102 NYFKQVLGV-------------------------NF-SPKTKEYASSICGRQYKQILD  133 (138)
T ss_dssp             HHHHHHTCT-------------------------TC-CGGGCHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHcCC-------------------------CC-CCCHHHHHhhHHHHHHHHHHH
Confidence            999985432                         11 112345678889999988753

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.97  E-value=7e-32  Score=242.99  Aligned_cols=89  Identities=44%  Similarity=0.696  Sum_probs=83.5

Q ss_pred             CchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       305 ~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      .+++++.|++.|+|+.|+|||+++|+|+|+|||||||++||||||+||+||||||||+||. .|++++|+.|+.+||..+
T Consensus        16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~-~W~~~~l~~m~~~GN~~a   94 (149)
T 2crw_A           16 ILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS-NWSWFQLRCMQVGGNASA   94 (149)
T ss_dssp             HHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCC-CCCHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCC-CCCHHHHHHHHHHhhHHH
Confidence            4577888999999999999999999999999999999999999999999999999999994 299999999999999999


Q ss_pred             HHHHHhhhcc
Q 006616          385 NSVWEELLQS  394 (638)
Q Consensus       385 n~i~e~~~~~  394 (638)
                      |++||+....
T Consensus        95 n~~~e~~~~~  104 (149)
T 2crw_A           95 SSFFHQHGCS  104 (149)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHHHhcCCC
Confidence            9999987653

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.97  E-value=1.2e-31  Score=286.04  Aligned_cols=120  Identities=42%  Similarity=0.794  Sum_probs=112.9

Q ss_pred             CCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHH
Q 006616          304 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF  383 (638)
Q Consensus       304 ~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~  383 (638)
                      ++++.+..|.+.|||..|||||+++|+|||+|+|||||++||||||+| +|||+||||+||  .|++++|++|+.+||..
T Consensus        20 ~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld--~w~~~~~~~~~~~gN~~   96 (386)
T 3lju_X           20 ERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AWEEAQVEFMASHGNDA   96 (386)
T ss_dssp             HHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTS--CCCHHHHHHHHHSSHHH
T ss_pred             HHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-Cccceeeeeccc--CCCHHHHHHHHHhcchH
Confidence            467889999999999999999999999999999999999999999999 999999999999  79999999999999999


Q ss_pred             HHHHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccCCC
Q 006616          384 ANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRKPK  448 (638)
Q Consensus       384 ~n~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~~~  448 (638)
                      +|++||+.+|+.                      ..+|.++++...||+||++||++++|+.+..
T Consensus        97 ~~~~~e~~~~~~----------------------~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~  139 (386)
T 3lju_X           97 ARARFESKVPSF----------------------YYRPTPSDCQLLREQWIRAKYERQEFIYPEK  139 (386)
T ss_dssp             HHHHHTTTCCTT----------------------SCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred             HHHHHhccCCcc----------------------CCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence            999999998762                      4689999999999999999999999998764

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=99.97  E-value=1.5e-31  Score=237.87  Aligned_cols=85  Identities=39%  Similarity=0.732  Sum_probs=80.5

Q ss_pred             CchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       305 ~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      ++++++.|++.|+|+.|+|||+++|+|+|+|||||||++||||||+||+||||||||+||  .|++++|+.|+.+||.++
T Consensus        25 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD--~W~~~el~~m~~~GN~~a  102 (147)
T 3dwd_A           25 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNAKF  102 (147)
T ss_dssp             HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC----CCHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCcccccccc--CCCHHHHHHHHHHhhHHH
Confidence            567889999999999999999999999999999999999999999999999999999999  799999999999999999


Q ss_pred             HHHHHhh
Q 006616          385 NSVWEEL  391 (638)
Q Consensus       385 n~i~e~~  391 (638)
                      |++||+.
T Consensus       103 n~~~ea~  109 (147)
T 3dwd_A          103 REFLESQ  109 (147)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHhC
Confidence            9999974

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.9e-30  Score=231.21  Aligned_cols=86  Identities=44%  Similarity=0.774  Sum_probs=81.0

Q ss_pred             CchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       305 ~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      .+.+++.|++.|+|+.|+|||+++|+|+|+|||||||++||||||+||+|||+||||+||. .|+++++++|+.+||.++
T Consensus        24 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~-~W~~~~l~~m~~~GN~~a  102 (144)
T 2p57_A           24 IQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDS-NWNWFQLRCMQVGGNANA  102 (144)
T ss_dssp             HHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCC-CCCHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCC-CCCHHHHHHHHHhCHHHH
Confidence            3467788899999999999999999999999999999999999999999999999999993 399999999999999999


Q ss_pred             HHHHHhh
Q 006616          385 NSVWEEL  391 (638)
Q Consensus       385 n~i~e~~  391 (638)
                      |++||+.
T Consensus       103 n~~~e~~  109 (144)
T 2p57_A          103 TAFFRQH  109 (144)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999975

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=99.96  E-value=3.3e-30  Score=232.34  Aligned_cols=86  Identities=40%  Similarity=0.772  Sum_probs=80.3

Q ss_pred             chHHHHHHcc-cCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHH
Q 006616          306 EKPIDVLRRV-CGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFA  384 (638)
Q Consensus       306 ~~~~~~~~~~-~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~  384 (638)
                      +++++.|++. |+|+.|+|||+++|+|+|+|||||+|++||||||+||+||||||||+||  .|++++|++|+.+||..+
T Consensus         9 ~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD--~Wt~e~l~~m~~~GN~~a   86 (163)
T 3sub_A            9 VEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMD--IFTDEQLKYIDKGGNKKC   86 (163)
T ss_dssp             HHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTC--CCCHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeecccc--CcCHHHHHHHHhhCHHHH
Confidence            4567777765 8999999999999999999999999999999999999999999999999  799999999999999999


Q ss_pred             HHHHHhhhc
Q 006616          385 NSVWEELLQ  393 (638)
Q Consensus       385 n~i~e~~~~  393 (638)
                      |.+||....
T Consensus        87 n~~~e~~g~   95 (163)
T 3sub_A           87 QTYLENYGI   95 (163)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999998554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=5.6e-29  Score=236.00  Aligned_cols=158  Identities=28%  Similarity=0.423  Sum_probs=139.8

Q ss_pred             ccccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616          455 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG  534 (638)
Q Consensus       455 ~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~  534 (638)
                      +++++|+.|++.|+.+.|. +|++.|+|||..+..+                       .++++.+........+..|+.
T Consensus         3 dlg~~L~~Aa~~G~~~~v~-~Ll~~Gadvn~~d~~g-----------------------~t~l~~a~~~~~~~~~~~ll~   58 (169)
T 4gpm_A            3 ELGKRLIEAAENGNKDRVK-DLIENGADVNASDSDG-----------------------RTPLHHAAENGHKEVVKLLIS   58 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHH-HHHHCCCCCCCcCCCC-----------------------CCHHHHHHHcCCHHHHHHHHh
Confidence            4567899999999987765 5568999999988776                       223334444555667777889


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCC
Q 006616          535 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKT  614 (638)
Q Consensus       535 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~T  614 (638)
                      .|++++..|.+|+||||+|+..|+.++|++||++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|.+|.|
T Consensus        59 ~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~T  138 (169)
T 4gpm_A           59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT  138 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          615 SLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       615 pL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||++|+..|+  .+++++|+++||
T Consensus       139 pL~~A~~~g~--~~iv~~Ll~~GA  160 (169)
T 4gpm_A          139 PLDLAREHGN--EEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHHHTTC--HHHHHHHHTC--
T ss_pred             HHHHHHHcCC--HHHHHHHHHCCC
Confidence            9999999998  899999999997

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.94  E-value=2.1e-26  Score=246.92  Aligned_cols=172  Identities=26%  Similarity=0.435  Sum_probs=126.1

Q ss_pred             ChhhhhHHHhHHHHH-hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCcccccc
Q 006616            1 MDAHLRYFKQGYELL-HQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGR   79 (638)
Q Consensus         1 ~~a~~~ff~~G~~l~-~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (638)
                      |+||++|||+||+++ ++++||+++|...++++|+.++++++.+.+.+++++...+.    ...     |..+.      
T Consensus       204 ~~a~~~ff~~g~~~~~~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~~~~----~~~-----~~~~~------  268 (385)
T 2q13_A          204 MQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDP----LYV-----PDPDP------  268 (385)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG----GSS-----SSCCT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----CCC-----CCCcc------
Confidence            579999999999998 59999999999999999999999998888887776542111    110     11100      


Q ss_pred             chhHHHHHHHhhhcCCCcceeEEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccC
Q 006616           80 SSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGS  157 (638)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~  157 (638)
                        +       + .......++|+|||+|+++.  .++.|+||||||+ ++.|+||++...                    
T Consensus       269 --~-------~-~~~~~~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~-~~~L~y~k~~~~--------------------  317 (385)
T 2q13_A          269 --T-------K-FPVNRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQ-GGNLMSQARGDV--------------------  317 (385)
T ss_dssp             --T-------T-SCCCCCCSCCEEEEEEC--------CCEEEEEEEE-TTEEEEECSSCS--------------------
T ss_pred             --c-------c-cccCCCCccEEEEEEEecCCCCCcCCceeEEEEEE-CCEEEEecCCCc--------------------
Confidence              0       0 01112356899999999765  3357999999999 567777776321                    


Q ss_pred             CccccccccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          158 GLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                                          .+.+.|+|..|+|++. ++.+|+|||+|++++  ++|+|||+|++||++||.||+.+|..
T Consensus       318 --------------------~~~~~i~l~~~~v~~~-~~~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~  376 (385)
T 2q13_A          318 --------------------AGGLAMDIDNCSVMAV-DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQ  376 (385)
T ss_dssp             --------------------SCEEEEECTTCEEEEE-CCTTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred             --------------------CCCceEEccceEEEec-cccCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence                                1224588999998864 345889999999999  99999999999999999999999876


Q ss_pred             Hhcc
Q 006616          236 LLSS  239 (638)
Q Consensus       236 ~~~~  239 (638)
                      +...
T Consensus       377 ~~~~  380 (385)
T 2q13_A          377 IYLS  380 (385)
T ss_dssp             CC--
T ss_pred             hccc
Confidence            5443

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=250.50  Aligned_cols=172  Identities=22%  Similarity=0.395  Sum_probs=125.3

Q ss_pred             ChhhhhHHHhHHHHH-hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCCCcccccc
Q 006616            1 MDAHLRYFKQGYELL-HQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGR   79 (638)
Q Consensus         1 ~~a~~~ff~~G~~l~-~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (638)
                      |+||.+|||+|++++ +++++|++.+..++++++..++.+++++...++++.....         ....|..+..     
T Consensus       227 ~~a~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----  292 (407)
T 4h8s_A          227 AHGQINFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQELLSVDE---------SVYTPDSDVA-----  292 (407)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCT---------TTTCTTSCSS-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---------cccCCCCCcc-----
Confidence            589999999999997 6799999999999999999998887766665554331110         0011111100     


Q ss_pred             chhHHHHHHHhhhcCCCcceeEEEEEEeecC--CCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccC
Q 006616           80 SSHKMIEAVMQSAAKGKVQTIRQGYLSKRSS--NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGS  157 (638)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~k~GyL~Kr~~--~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~  157 (638)
                                 ........+.|+|||+||+.  ..+++|+||||||+ ++.|+||+.....+                  
T Consensus       293 -----------~~~~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~-~~~l~y~~~~~~~~------------------  342 (407)
T 4h8s_A          293 -----------APQINRNLIQKAGYLNLRNKTGLVTTTWERLYFFTQ-GGNLMCQPRGAVAG------------------  342 (407)
T ss_dssp             -----------SCCCCCSCSCCEEEEEEEEECSSSCEEEEEEEEEEC-SSCEECCCTTCSSC------------------
T ss_pred             -----------cccccCCcceeeceeeeeccCCCCCCCceEEEEEEE-CCEEEEEeCCCCCC------------------
Confidence                       01122345679999999853  34578999999998 67788876543211                  


Q ss_pred             CccccccccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          158 GLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                                            ...++|..|+|++. ++.+|+|||+|++|+  ++|+|||+|++|+++||.||+++|..
T Consensus       343 ----------------------~~~~~l~~~~v~~~-~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~  399 (407)
T 4h8s_A          343 ----------------------GLIQDLDNCSVMAV-DCEDRRYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQ  399 (407)
T ss_dssp             ----------------------CCCBCSSCCEEEEE-CCTTCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSC
T ss_pred             ----------------------CeEEECCceEEEEC-CCCCCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence                                  12367889999974 456899999999986  68999999999999999999999976


Q ss_pred             Hhcc
Q 006616          236 LLSS  239 (638)
Q Consensus       236 ~~~~  239 (638)
                      +...
T Consensus       400 ~~~~  403 (407)
T 4h8s_A          400 IYLT  403 (407)
T ss_dssp             C---
T ss_pred             hhcc
Confidence            6543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.91  E-value=2.2e-25  Score=233.87  Aligned_cols=87  Identities=38%  Similarity=0.715  Sum_probs=83.2

Q ss_pred             CCchHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHH
Q 006616          304 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAF  383 (638)
Q Consensus       304 ~~~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~  383 (638)
                      .+++.++.|++.|+|+.|||||+++|+|+|+|+|||+|++||||||+||+||||||||+||  .|++++++.|+.+||..
T Consensus        23 ~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~--~~~~~~~~~~~~~gN~~  100 (329)
T 3o47_A           23 RTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNAK  100 (329)
T ss_dssp             CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSC--CCCHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeecccc--CCCHHHHHHHHHhCcHH
Confidence            3567889999999999999999999999999999999999999999999999999999999  79999999999999999


Q ss_pred             HHHHHHhhh
Q 006616          384 ANSVWEELL  392 (638)
Q Consensus       384 ~n~i~e~~~  392 (638)
                      +|++||+..
T Consensus       101 ~n~~~e~~~  109 (329)
T 3o47_A          101 FREFLESQE  109 (329)
T ss_dssp             HHHHHHTCS
T ss_pred             HHHHHHhcC
Confidence            999999754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.90  E-value=4.5e-24  Score=199.17  Aligned_cols=157  Identities=20%  Similarity=0.261  Sum_probs=137.5

Q ss_pred             ccccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616          455 SVAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG  534 (638)
Q Consensus       455 ~~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~  534 (638)
                      +....|+.|+..|+.+.|.. |++.|+++|..+..+                     .+++++  +.. +...++.+|+.
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~-Ll~~~~~~~~~~~~g---------------------~t~L~~--A~~-~~~~~v~~Ll~   58 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTS-LLQNNVNVNAQNGFG---------------------RTALQV--MKL-GNPEIARRLLL   58 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHH-HTTSCCCTTCCCTTS---------------------CCHHHH--CCS-SCHHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHH-HHhCCCCccccCccC---------------------ccHHHH--HHc-CcHHHHHHHHH
Confidence            34567899999998877654 558999999887655                     233333  334 66677888889


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCCccCCCC
Q 006616          535 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD-PRAVNREGK  613 (638)
Q Consensus       535 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad-~~~~d~~g~  613 (638)
                      .|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus        59 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~  138 (162)
T 1ihb_A           59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD  138 (162)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998 599999999


Q ss_pred             CHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          614 TSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       614 TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||||+|+..|+  .+++++|+++||
T Consensus       139 t~l~~A~~~~~--~~~~~~Ll~~GA  161 (162)
T 1ihb_A          139 TACDLARLYGR--NEVVSLMQANGA  161 (162)
T ss_dssp             CHHHHHHHTTC--HHHHHHHHHTC-
T ss_pred             cHHHHHHHcCC--HHHHHHHHHhCC
Confidence            99999999998  899999999997

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.89  E-value=2.4e-23  Score=196.29  Aligned_cols=155  Identities=26%  Similarity=0.344  Sum_probs=136.8

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      ...|+.|+..|+.+.| ++|++.|+|+|..+..+                       .++++.+...+...++.+|+..|
T Consensus        15 ~~~l~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g   70 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEV-RILMANGADVNAEDASG-----------------------WTPLHLAAFNGHLEIVEVLLKNG   70 (169)
T ss_dssp             HHHHHHHHHHTCHHHH-HHHHHTTCCTTCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cchHHHHHHcCCHHHH-HHHHHCCCCCCCCCCCC-----------------------CCHHHHHHHcCCHHHHHHHHHcC
Confidence            3578889999888766 56668999999887665                       22334444455667778888999


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHH
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL  616 (638)
                      ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        71 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  150 (169)
T 2y1l_E           71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF  150 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHhhCC
Q 006616          617 ELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lLle~g  637 (638)
                      ++|+..|+  .+++++|++.|
T Consensus       151 ~~A~~~~~--~~~~~~L~~~G  169 (169)
T 2y1l_E          151 DISIDNGN--EDLAEILQKLN  169 (169)
T ss_dssp             HHHHHTTC--HHHHHHHHTC-
T ss_pred             HHHHHhCC--HHHHHHHHHcC
Confidence            99999998  89999999987

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.89  E-value=2.7e-23  Score=211.85  Aligned_cols=166  Identities=22%  Similarity=0.287  Sum_probs=106.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccch-------hhHHHHHhhhhcccc---CCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISS-------LTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~-------~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..++...++++|+..|+|||..+..+.++.+       ..++++|+..+....   ....+++..+.......
T Consensus        54 t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~  133 (269)
T 4b93_B           54 HPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ  133 (269)
T ss_dssp             ---------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHH
Confidence            45777887777777778888999999998877744333       345555554332211   12233444444555556


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      ++.+|+..|++++..|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+.++|++||++|||++.
T Consensus       134 ~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV  213 (269)
T ss_dssp             HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            67777788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCCCCCHHHHHHHcC
Q 006616          608 VNREGKTSLELAVESN  623 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g  623 (638)
                      +|.+|.||||+|+.++
T Consensus       214 ~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          214 LNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             CCTTSCCSGGGSCTTC
T ss_pred             cCCCCCCHHHHHHhCC
Confidence            8888888888887665

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=1e-22  Score=188.90  Aligned_cols=152  Identities=21%  Similarity=0.296  Sum_probs=134.6

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      +.|+.|+..|+.+.+..+|...+.++|..+..+                     .++++  . ...+...++.+|+..|+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g---------------------~t~L~--~-~~~~~~~~v~~Ll~~g~   59 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFG---------------------KTALQ--V-MMFGSTAIALELLKQGA   59 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTS---------------------CCHHH--H-SCTTCHHHHHHHHHTTC
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCC---------------------CcHHH--H-HHcCCHHHHHHHHHCCC
Confidence            568899999999988877755566998877665                     23333  3 34456667778889999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      +++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.|||+
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHhhC
Q 006616          618 LAVESNFADSEVLAILSDS  636 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle~  636 (638)
                      +|+..|+  .+++++|+++
T Consensus       139 ~A~~~~~--~~~v~~Ll~~  155 (156)
T 1bd8_A          139 LALQRGA--QDLVDILQGH  155 (156)
T ss_dssp             HHHHSCC--HHHHHHHHTT
T ss_pred             HHHHcCc--HHHHHHHHhh
Confidence            9999998  8999999975

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.88  E-value=2.8e-23  Score=194.67  Aligned_cols=156  Identities=28%  Similarity=0.367  Sum_probs=135.8

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      ...|+.|+..++.+.|..+|...+.+++..+..+                       .++++.+...+...++.+|+..|
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g   65 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQ-----------------------STPLHFAAGYNRVSVVEYLLQHG   65 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTC-----------------------CCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCC-----------------------CCHHHHHHHcChHHHHHHHHhcC
Confidence            4678999999999988887766777777666544                       23344445556677788889999


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHH
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL  616 (638)
                      ++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  145 (165)
T 3twr_A           66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL  145 (165)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTG
T ss_pred             CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHhhCCC
Q 006616          617 ELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++|+. ++  .+|+++|+++||
T Consensus       146 ~~a~~-~~--~~i~~~L~~~gA  164 (165)
T 3twr_A          146 DLVKD-GD--TDIQDLLRGDAA  164 (165)
T ss_dssp             GGSCT-TC--HHHHHHHHTC--
T ss_pred             HhHhc-CC--hHHHHHHhhccc
Confidence            99876 66  799999999986

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.88  E-value=6.8e-23  Score=193.44  Aligned_cols=154  Identities=22%  Similarity=0.200  Sum_probs=135.3

Q ss_pred             cceecccccccchhhhhhhcccccC-ccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVD-VNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaD-vN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      ..|+.|+..|+.+.|..+| ..|.+ +|..+..+                       .++++.+...+...++.+|+..|
T Consensus         4 ~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g   59 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHL-RKGDNLVNKPDERG-----------------------FTPLIWASAFGEIETVRFLLEWG   59 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHH-TTCSGGGGCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hhHHHHHHcCCHHHHHHHH-HcCcccccCCCCCC-----------------------CCHHHHHHHcCCHHHHHHHHHcC
Confidence            3588999999998887776 45554 77776555                       23344444556667788888999


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHH
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL  616 (638)
                      ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  139 (172)
T 3v30_A           60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM  139 (172)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHhhCC
Q 006616          617 ELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lLle~g  637 (638)
                      |+|+..|+  .+++++|+++|
T Consensus       140 ~~A~~~~~--~~~~~~L~~~~  158 (172)
T 3v30_A          140 DLAVALGY--RKVQQVIENHI  158 (172)
T ss_dssp             HHHHHHTC--HHHHHHHHHHH
T ss_pred             HHHHHhCc--HHHHHHHHHHH
Confidence            99999998  89999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.88  E-value=7.8e-23  Score=192.06  Aligned_cols=154  Identities=20%  Similarity=0.239  Sum_probs=135.9

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..|+.+.|. .|++.|+++|..+..+                       .++++.+...+...++.+|+..|+
T Consensus         5 t~L~~A~~~g~~~~v~-~ll~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g~   60 (167)
T 3v31_A            5 LSVHQLAAQGEMLYLA-TRIEQENVINHTDEEG-----------------------FTPLMWAAAHGQIAVVEFLLQNGA   60 (167)
T ss_dssp             CCHHHHHHTTCHHHHH-HHHHHSSCTTCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             chHHHHHHCCCHHHHH-HHHHcCCCcCCCCCCC-----------------------CCHHHHHHHCCCHHHHHHHHHcCC
Confidence            4688899999887665 4558899999887766                       223344444556677788888999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      +++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||+
T Consensus        61 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  140 (167)
T 3v31_A           61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD  140 (167)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHhhCC
Q 006616          618 LAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle~g  637 (638)
                      +|+..|+  .+++++|++++
T Consensus       141 ~A~~~~~--~~~~~~L~~~~  158 (167)
T 3v31_A          141 LAVALGY--RSVQQVIESHL  158 (167)
T ss_dssp             HHHHHTC--HHHHHHHHHHH
T ss_pred             HHHHcCc--HHHHHHHHHHH
Confidence            9999998  89999999864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.88  E-value=3.7e-23  Score=196.85  Aligned_cols=157  Identities=24%  Similarity=0.206  Sum_probs=140.1

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      ...|+.|+..|+...|..+|...+.++|..+..+                       .++++.+...+...++.+|+..|
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g   62 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHG-----------------------FSPLHWACREGRSAVVEMLIMRG   62 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCC-----------------------CCHHHHHHHcCcHHHHHHHHHcC
Confidence            4678999999999988887766688999887665                       23344444555667788888999


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHH
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL  616 (638)
                      ++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        63 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  142 (179)
T 3f6q_A           63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV  142 (179)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGG
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHhhCCC
Q 006616          617 ELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++|+..++  .+++++|+++|+
T Consensus       143 ~~A~~~~~--~~~~~~L~~~g~  162 (179)
T 3f6q_A          143 DKAKAPLR--ELLRERAEKMGQ  162 (179)
T ss_dssp             GGSCHHHH--HHHHHHHHHTTC
T ss_pred             HHHHHHHH--HHHHHHHHHhhc
Confidence            99999987  899999999986

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.87  E-value=3.5e-23  Score=208.42  Aligned_cols=179  Identities=19%  Similarity=0.127  Sum_probs=142.4

Q ss_pred             cceecccccccchhh---hhhhcccccCccc----cccchhcc----------chhhHHHHHhhhhcccc----------
Q 006616          458 HQIWEGVRTNDKKAV---YRHIVNFEVDVNA----VYEQVSCI----------SSLTLAKAMLLNEQTSL----------  510 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v---~~lLl~~gaDvN~----~~~~~~~~----------~~~~l~~~ll~~~~~~~----------  510 (638)
                      ..|+.|+..|+.+.|   +++|+..|+|+|.    .+..+..+          .+..+++.|+..+....          
T Consensus         4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   83 (256)
T 2etb_A            4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC   83 (256)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence            356777777777643   4455567888876    55555222          33444555554432211          


Q ss_pred             ----CCCcccccccccCCcccccccccCCCCCCCcCCCC-------------CCcHHHHHHHhCCHHHHHHHHH---cCC
Q 006616          511 ----ERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLE-------------GCTLLHLACDSADIGMLELLLQ---YGA  570 (638)
Q Consensus       511 ----~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~-------------G~TpLh~Aa~~g~~~~v~~Ll~---~ga  570 (638)
                          ....++|+.+...+...++.+|+..|++++..|..             |.||||+|+..|+.+++++|++   +|+
T Consensus        84 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga  163 (256)
T 2etb_A           84 TDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA  163 (256)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence                12344555556666777888899999999999886             9999999999999999999999   999


Q ss_pred             CCcccCCCCCcHHHHHHH--hCCHH-------HHHHHHhCCCCC-------CCccCCCCCHHHHHHHcCCCcHHHHHHHh
Q 006616          571 NINATDSRGLTPLHRCIL--RGKAM-------FAKLLLTRGADP-------RAVNREGKTSLELAVESNFADSEVLAILS  634 (638)
Q Consensus       571 dvn~~d~~G~TpLh~A~~--~g~~~-------~v~lLl~~gad~-------~~~d~~g~TpL~~A~~~g~~d~eiv~lLl  634 (638)
                      ++|.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+|+..|+  .+++++|+
T Consensus       164 ~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--~~~v~~Ll  241 (256)
T 2etb_A          164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK--IEIFRHIL  241 (256)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC--HHHHHHHH
T ss_pred             CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC--HHHHHHHH
Confidence            999999999999999999  78888       999999999999       9999999999999999998  89999999


Q ss_pred             hCCC
Q 006616          635 DSHG  638 (638)
Q Consensus       635 e~ga  638 (638)
                      ++|+
T Consensus       242 ~~g~  245 (256)
T 2etb_A          242 QREF  245 (256)
T ss_dssp             HHHH
T ss_pred             hCCC
Confidence            9863

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.87  E-value=1.4e-22  Score=187.59  Aligned_cols=150  Identities=21%  Similarity=0.250  Sum_probs=129.9

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      .+.|+.|+..|+.+.|. +|++.|++++. +..+                       .++++.+...+....+.+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~-~Ll~~g~~~~~-~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g   57 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVR-ILMANGAPFTT-DWLG-----------------------TSPLHLAAQYGHFSTTEVLLRAG   57 (153)
T ss_dssp             HHHHHHHHHHTCHHHHH-HHHHHTCCCCC-CTTC-----------------------CCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             cHHHHHHHHcCCHHHHH-HHHHcCCCCCc-CCCC-----------------------CCHHHHHHHcCCHHHHHHHHHcC
Confidence            45788999999887665 55588998863 3322                       23334444445566778888999


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHH
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL  616 (638)
                      ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        58 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  137 (153)
T 1awc_B           58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF  137 (153)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHH
Q 006616          617 ELAVESNFADSEVLAIL  633 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lL  633 (638)
                      ++|+..|+  .+++++|
T Consensus       138 ~~A~~~~~--~~i~~~L  152 (153)
T 1awc_B          138 DISIDNGN--EDLAEIL  152 (153)
T ss_dssp             HHHHHTTC--HHHHHHH
T ss_pred             HHHHHcCC--HHHHHHh
Confidence            99999998  8999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.87  E-value=1.1e-22  Score=195.74  Aligned_cols=154  Identities=22%  Similarity=0.166  Sum_probs=135.8

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..++.+.| ++|++.|+|+|..+..+                       .++++.+...+...++.+|+..|+
T Consensus        37 t~L~~A~~~g~~~~v-~~Ll~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll~~g~   92 (192)
T 2rfm_A           37 TPLMVACMLGMENAI-DKLVENFDKLEDKDIEG-----------------------STALIWAVKNNRLGIAEKLLSKGS   92 (192)
T ss_dssp             CHHHHHHHHTCGGGH-HHHHHHHCCTTCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHH-HHHHHhccccccccccC-----------------------ccHHHHHHHcCCHHHHHHHHHCCC
Confidence            568888888877655 56668899999877655                       233444445556677788888999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      +++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||+
T Consensus        93 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  172 (192)
T 2rfm_A           93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA  172 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHhhCC
Q 006616          618 LAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle~g  637 (638)
                      +|+..|+  .+++++|+++|
T Consensus       173 ~A~~~~~--~~~v~~Ll~~~  190 (192)
T 2rfm_A          173 SARIFGR--QEVIKIFTEVR  190 (192)
T ss_dssp             HHHHTTC--HHHHHHHHHHH
T ss_pred             HHHHhCc--HHHHHHHHhcc
Confidence            9999998  89999999865

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.87  E-value=1.9e-22  Score=199.73  Aligned_cols=179  Identities=21%  Similarity=0.181  Sum_probs=147.3

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhccc--------cCCCccccccccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTS--------LERSSSSLTGNSS  522 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~--------~~~~~~~l~~~~~  522 (638)
                      ..|+.|+..|+.+.|..+|...|+|+|..+..+..+       .+..+++.|+..+...        .....++++.+..
T Consensus         5 t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~   84 (232)
T 2rfa_A            5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI   84 (232)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHH
Confidence            468889988888877666644599999988776443       3346666666554332        0123445555556


Q ss_pred             CCcccccccccCCCCCCCcCCC-------------CCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHh
Q 006616          523 DRSSSGSLNLAGTSEGQTMDDL-------------EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILR  589 (638)
Q Consensus       523 ~~~~~~~~lL~~~~~~~~~~d~-------------~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~  589 (638)
                      .+...++.+|+..|++++..+.             .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~  164 (232)
T 2rfa_A           85 NQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ  164 (232)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTC
T ss_pred             cCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            6677788889999999998865             799999999999999999999999999999999999999999999


Q ss_pred             CCHHHH----HHHHhCCCCC------CCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          590 GKAMFA----KLLLTRGADP------RAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       590 g~~~~v----~lLl~~gad~------~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |+.+++    ++|+++|+++      +.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus       165 ~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~--~~~v~~Ll~~g~  221 (232)
T 2rfa_A          165 PNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN--IVMFQHLMQKRK  221 (232)
T ss_dssp             SCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC--HHHHHHHHhcCc
Confidence            999988    9999999998      5899999999999999998  999999999863

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.87  E-value=5.1e-22  Score=191.87  Aligned_cols=177  Identities=20%  Similarity=0.240  Sum_probs=132.2

Q ss_pred             ceecccccccchhhhhhhcccccCccccccchhccc-------hhhHHHHHhhhhcccc---CCCcccccccccCCcccc
Q 006616          459 QIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCIS-------SLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSSG  528 (638)
Q Consensus       459 ~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~-------~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~~  528 (638)
                      .|+.|+..++...|..+|...++++|..+..+..+.       +..+++.|+..+.+..   ....++++.+...+...+
T Consensus         8 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~   87 (201)
T 3hra_A            8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI   87 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            455555555555555555444445555544442222       2234444443222111   111333444444455555


Q ss_pred             ccccc-CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHhCC-----HHHHHHHHhC
Q 006616          529 SLNLA-GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGK-----AMFAKLLLTR  601 (638)
Q Consensus       529 ~~lL~-~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~-----~~~v~lLl~~  601 (638)
                      +.+|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..+.     .+++++|+++
T Consensus        88 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~  167 (201)
T 3hra_A           88 LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN  167 (201)
T ss_dssp             HHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT
T ss_pred             HHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC
Confidence            66666 788899999999999999999999999999999999 9999999999999999999998     9999999999


Q ss_pred             CCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616          602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       602 gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~g  637 (638)
                      |++++.+|..|.||||+|+..|+  .+++++|+++|
T Consensus       168 ga~~~~~~~~g~t~l~~A~~~~~--~~~~~~Ll~~G  201 (201)
T 3hra_A          168 GADQSIKDNSGRTAMDYANQKGY--TEISKILAQYN  201 (201)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTC--HHHHHHHHTCC
T ss_pred             CCCCCccCCCCCCHHHHHHHcCC--HhHHHHHHhcC
Confidence            99999999999999999999998  89999999987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.87  E-value=7e-22  Score=194.17  Aligned_cols=179  Identities=17%  Similarity=0.180  Sum_probs=148.8

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhccc----cCCCcccccccccCCc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTS----LERSSSSLTGNSSDRS  525 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~----~~~~~~~l~~~~~~~~  525 (638)
                      ...|+.|+..++.+. +++|++.|+|+|..+..+..+       .+..+++.++......    .....++++.+...+.
T Consensus        26 ~t~L~~A~~~g~~~~-v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  104 (223)
T 2f8y_A           26 ETALHLAARYSRSDA-AKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV  104 (223)
T ss_dssp             CCHHHHHHHTTCHHH-HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CchHHHHHHcCCHHH-HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCc
Confidence            356888888887664 566668999999988766333       3346666666544311    1122344555555566


Q ss_pred             ccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q 006616          526 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP  605 (638)
Q Consensus       526 ~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~  605 (638)
                      ..++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       105 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  184 (223)
T 2f8y_A          105 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR  184 (223)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            77788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          606 RAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       606 ~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +.+|..|.|||++|+..++  .+++++|+++|+
T Consensus       185 ~~~~~~g~t~l~~A~~~~~--~~i~~~L~~~g~  215 (223)
T 2f8y_A          185 DITDHMDRLPRDIAQERMH--HDIVRLLDEYNL  215 (223)
T ss_dssp             TCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             ccccccCCCHHHHHHHhcc--hHHHHHHHHcCC
Confidence            9999999999999999998  899999999985

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.87  E-value=4.7e-22  Score=188.23  Aligned_cols=118  Identities=31%  Similarity=0.466  Sum_probs=111.5

Q ss_pred             ccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHH
Q 006616          519 GNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL  598 (638)
Q Consensus       519 ~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lL  598 (638)
                      .+...+....+..|+..|+++|..|.+|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.++|++|
T Consensus        10 ~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~L   89 (169)
T 4gpm_A           10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL   89 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHH
Confidence            34455667778888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       599 l~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +++|++++.+|.+|.||||+|+..|+  .++|++|+++||
T Consensus        90 l~~gadvn~~d~~G~TpLh~A~~~g~--~~~v~~Ll~~ga  127 (169)
T 4gpm_A           90 ISKGADVNAKDSDGRTPLHHAAENGH--KEVVKLLISKGA  127 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHCcCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            99999999999999999999999998  899999999986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.87  E-value=1.2e-22  Score=184.54  Aligned_cols=120  Identities=19%  Similarity=0.195  Sum_probs=111.5

Q ss_pred             cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCC-CCcHHHHHHHhCCHHH
Q 006616          516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMF  594 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~-G~TpLh~A~~~g~~~~  594 (638)
                      +++.+...+....+..|+..|++++..|..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+|+..|+.++
T Consensus        15 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~   93 (136)
T 1d9s_A           15 GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDT   93 (136)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            4444555566777888888999999999999999999999 9999999999999999999999 9999999999999999


Q ss_pred             HHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          595 AKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       595 v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +++|+++|++++.+|..|.||||+|+..++  .+++++|+++||
T Consensus        94 v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           94 LVVLHRAGARLDVCDAWGRLPVDLAEEQGH--RDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHTCCCCCCCSSSSSCHHHHHHHHTC--HHHHHHHHHHHC
T ss_pred             HHHHHHcCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            999999999999999999999999999998  899999999986

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.87  E-value=4.9e-22  Score=204.31  Aligned_cols=156  Identities=22%  Similarity=0.237  Sum_probs=128.1

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      ...|+.|+..|+.+.|. +|++.|+|+|..+..+                       .++++.+...+...++.+|+..|
T Consensus        41 ~t~l~~A~~~g~~~~v~-~Ll~~g~~~~~~~~~g-----------------------~t~L~~A~~~g~~~~v~~Ll~~g   96 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVL-RLLERGADINYANVDG-----------------------LTALHQACIDDNVDMVKFLVENG   96 (299)
T ss_dssp             HHHHHHHHHHTCHHHHH-HHHHHCCCTTCBCTTC-----------------------CBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccHHHHHHHcCCHHHHH-HHHHcCCCCcccCCCC-----------------------CCHHHHHHHcCCHHHHHHHHHCC
Confidence            35688888888877665 5558999999887665                       23334444455566777777888


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC---------------------------------------
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS---------------------------------------  577 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~---------------------------------------  577 (638)
                      ++++..|..|.||||+|+..|+.+++++|+++|++++..|.                                       
T Consensus        97 a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  176 (299)
T 1s70_B           97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI  176 (299)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhH
Confidence            88888888888888888888888888888888888776553                                       


Q ss_pred             ---------------------CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          578 ---------------------RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       578 ---------------------~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                                           .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+  .+++++|+++
T Consensus       177 ~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~  254 (299)
T 1s70_B          177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK--EEACRILVEN  254 (299)
T ss_dssp             HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHHT
T ss_pred             HHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCC--HHHHHHHHHc
Confidence                                 47788999999999999999999999999999999999999999998  8999999999


Q ss_pred             CC
Q 006616          637 HG  638 (638)
Q Consensus       637 ga  638 (638)
                      ||
T Consensus       255 ga  256 (299)
T 1s70_B          255 LC  256 (299)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.86  E-value=6.7e-22  Score=201.02  Aligned_cols=178  Identities=20%  Similarity=0.191  Sum_probs=132.6

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccc-------hhhHHHHHhhhhccccC-----------------CC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCIS-------SLTLAKAMLLNEQTSLE-----------------RS  513 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~-------~~~l~~~ll~~~~~~~~-----------------~~  513 (638)
                      ..|+.|+..++.+ ++++|++.|+|+|..+..+..+.       +..+++.|+........                 ..
T Consensus        47 t~L~~A~~~g~~~-~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (282)
T 1oy3_D           47 TALHLAAILGEAS-TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH  125 (282)
T ss_dssp             CHHHHHHHHTCHH-HHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------
T ss_pred             CHHHHHHHcCCHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhc
Confidence            5678888877765 55677799999998887664333       33555555543221100                 00


Q ss_pred             cccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCC-CCcHHHHHHHhCCH
Q 006616          514 SSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKA  592 (638)
Q Consensus       514 ~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~-G~TpLh~A~~~g~~  592 (638)
                      ..................+...+.+++..|..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~  205 (282)
T 1oy3_D          126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA  205 (282)
T ss_dssp             ------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             chhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCH
Confidence            01111112222233344556667789999999999999999999999999999999999999865 99999999999999


Q ss_pred             HHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       593 ~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++|++|+++|++++.+|..|.||||+|+..|+  .+++++|+++||
T Consensus       206 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ga  249 (282)
T 1oy3_D          206 SVLELLLKAGADPTARMYGGRTPLGSALLRPN--PILARLLRAHGA  249 (282)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC--HHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCcccccCCCCHHHHHHHcCC--cHHHHHHHHcCC
Confidence            99999999999999999999999999999998  899999999996

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.86  E-value=1.1e-21  Score=197.48  Aligned_cols=176  Identities=17%  Similarity=0.169  Sum_probs=144.9

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccch-------hhHHHHHhhhhccc----cCCCcccccccccCCcc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISS-------LTLAKAMLLNEQTS----LERSSSSLTGNSSDRSS  526 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~-------~~l~~~ll~~~~~~----~~~~~~~l~~~~~~~~~  526 (638)
                      ..|+.|+..++.+ ++++|++.|+|+|..+..+..+.+       ..+++.|+......    .....++++.+...+..
T Consensus        59 t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  137 (253)
T 1yyh_A           59 TALHLAARYSRSD-AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE  137 (253)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS
T ss_pred             cHHHHHHHcCCHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH
Confidence            5678888887765 456777899999998877644433       35566666543311    11223444444555566


Q ss_pred             cccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          527 SGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      .++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       138 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             SHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            77888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          607 AVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       607 ~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      .+|..|.|||++|+..|+  .+|+++|...
T Consensus       218 ~~d~~g~tpl~~A~~~g~--~~i~~~l~~~  245 (253)
T 1yyh_A          218 ITDHMDRLPRDIAQERMH--HDIVRLLDLE  245 (253)
T ss_dssp             CCCTTCCCHHHHHHHTTC--HHHHHHHHC-
T ss_pred             ccccCCCCHHHHHHHcCC--HHHHHHHHHH
Confidence            999999999999999999  8999999864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.86  E-value=2.1e-22  Score=203.10  Aligned_cols=179  Identities=15%  Similarity=0.110  Sum_probs=143.2

Q ss_pred             cceecccccccchhhhhhh---cccccCccccc----cchhc----------cchhhHHHHHhhhhcccc----------
Q 006616          458 HQIWEGVRTNDKKAVYRHI---VNFEVDVNAVY----EQVSC----------ISSLTLAKAMLLNEQTSL----------  510 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lL---l~~gaDvN~~~----~~~~~----------~~~~~l~~~ll~~~~~~~----------  510 (638)
                      ..|+.|++.|+.+.|..+|   +..|+++|..+    ..+..          ..+..+++.|+..+....          
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   86 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF   86 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence            4678888888887754444   35888888665    22322          244555666665432110          


Q ss_pred             ----CCCcccccccccCCcccccccccCCCCCCCcCC--------------CCCCcHHHHHHHhCCHHHHHHHHH---cC
Q 006616          511 ----ERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDD--------------LEGCTLLHLACDSADIGMLELLLQ---YG  569 (638)
Q Consensus       511 ----~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d--------------~~G~TpLh~Aa~~g~~~~v~~Ll~---~g  569 (638)
                          ....++|+.+...+...++.+|+..|++++..+              ..|.||||+|+..|+.++|++|++   +|
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence                023345555556677778889999999999998              689999999999999999999999   99


Q ss_pred             CCCcccCCCCCcHHHHHHHhCC---------HHHHHHHHhCCCCC-------CCccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616          570 ANINATDSRGLTPLHRCILRGK---------AMFAKLLLTRGADP-------RAVNREGKTSLELAVESNFADSEVLAIL  633 (638)
Q Consensus       570 advn~~d~~G~TpLh~A~~~g~---------~~~v~lLl~~gad~-------~~~d~~g~TpL~~A~~~g~~d~eiv~lL  633 (638)
                      +++|.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+..|+  .++|++|
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--~~~v~~L  244 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK--IGIFQHI  244 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC--HHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC--HHHHHHH
Confidence            9999999999999999999888         79999999999999       6799999999999999998  9999999


Q ss_pred             hhCCC
Q 006616          634 SDSHG  638 (638)
Q Consensus       634 le~ga  638 (638)
                      +++|+
T Consensus       245 l~~g~  249 (260)
T 3jxi_A          245 IRREI  249 (260)
T ss_dssp             HHHHH
T ss_pred             HHhCC
Confidence            99873

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.85  E-value=2.3e-21  Score=174.78  Aligned_cols=116  Identities=26%  Similarity=0.424  Sum_probs=78.2

Q ss_pred             cceeEEEEEEeecCC-CCCCceeeEEEEecCceEEEEecCCCC---CCC-CCCccccccCcCcccCCccccccccccCCC
Q 006616           97 VQTIRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSK---SSG-SGSQLSSQRNSSELGSGLLSRWLSSHYHGG  171 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~-~~~~WkrRwfvL~~~~~l~y~~~~~~~---~~g-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  171 (638)
                      ..++|+|||+|++++ .+++|++|||||+++++||||++..+.   ..+ .+              ++..          
T Consensus         2 ~~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i--------------~l~~----------   57 (128)
T 2rlo_A            2 AIPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEM--------------DLLR----------   57 (128)
T ss_dssp             CCEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEE--------------ESSS----------
T ss_pred             CcceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCee--------------eeee----------
Confidence            357899999999653 678999999999988999999752110   000 00              0000          


Q ss_pred             CCCccccccceeecccceeecC-----CCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          172 VHDEKSAARHTVNLLTSTIKVD-----ADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       172 ~~~~~~~~~~~i~l~~~~v~~~-----~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                        -....+.+.|.|..|++.+.     +...+++|||.|++++ ++|+|+|+|++|+++||+||+.+|..+++
T Consensus        58 --~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l~  128 (128)
T 2rlo_A           58 --TTVKVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQ  128 (128)
T ss_dssp             --CEEECSSCCCCCSSCCCSCCSCCCCSSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred             --eEEecCCCccccccccccccccccccccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHcC
Confidence              00011222244444443311     1111578999999998 99999999999999999999999988764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.85  E-value=9e-22  Score=208.79  Aligned_cols=179  Identities=13%  Similarity=0.055  Sum_probs=146.2

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccch-----hccchhhHHHHHhhhh-------------------------
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-----SCISSLTLAKAMLLNE-------------------------  506 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~-----~~~~~~~l~~~ll~~~-------------------------  506 (638)
                      ...|+.|+..++.+ ++++|++.|++++..++..     ....+..+++.|+...                         
T Consensus        54 ~t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (364)
T 3ljn_A           54 CTALHLACKFGCVD-TAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSH  132 (364)
T ss_dssp             CCHHHHHHHHCCHH-HHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTE
T ss_pred             CcHHHHHHHcCCHH-HHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccc
Confidence            35678888877665 5677779999888754433     2334456666666541                         


Q ss_pred             -ccccCCCcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC-----CcccCCCCC
Q 006616          507 -QTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN-----INATDSRGL  580 (638)
Q Consensus       507 -~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-----vn~~d~~G~  580 (638)
                       .+..+.+++++++........++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++     +|.+|..|+
T Consensus       133 ~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             EEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             cCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence             22223444444443332277788889999999999999999999999999999999999999999     999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          581 TPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       581 TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+  .++|++|+++|+
T Consensus       213 t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~--~~~v~~Ll~~~~  268 (364)
T 3ljn_A          213 SHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM--VLLTKELLQKTD  268 (364)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC--HHHHHHHHHHSC
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh--HHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999998  999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=200.56  Aligned_cols=157  Identities=22%  Similarity=0.260  Sum_probs=134.3

Q ss_pred             cceecccccccchhhhhhhccccc-CccccccchhccchhhHHHHHhhhhccccCCCcccccccc---cCCccccccccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEV-DVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNS---SDRSSSGSLNLA  533 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~ga-DvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~---~~~~~~~~~lL~  533 (638)
                      ..|+.|+..++.+. +++|++.|+ ++|..+..+                     .+++++++..   .......+..|+
T Consensus       113 T~Lh~A~~~g~~~~-v~~Ll~~g~~~~~~~~~~g---------------------~tpL~~a~~~~~~~~~~~~~v~~Ll  170 (276)
T 4hbd_A          113 TALHYSVSHANFPV-VQQLLDSGVCKVDKQNRAG---------------------YSPIMLTALATLKTQDDIETVLQLF  170 (276)
T ss_dssp             CHHHHHHHTTCHHH-HHHHHHTSCCCTTCCCTTS---------------------CCHHHHGGGCCCCSHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCHHH-HHHHHHCCCCcCCCCCCCC---------------------CCHHHHHHHHHhhhhhhHHHHHHHH
Confidence            57888888887764 566678898 999887766                     2333333221   334455667788


Q ss_pred             CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh-CCCCCCCccCCC
Q 006616          534 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT-RGADPRAVNREG  612 (638)
Q Consensus       534 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~-~gad~~~~d~~g  612 (638)
                      ..|++++..|..|+||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus       171 ~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  250 (276)
T 4hbd_A          171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG  250 (276)
T ss_dssp             HHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence            8889999999999999999999999999999999999999999999999999999999999999999 899999999999


Q ss_pred             CCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          613 KTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       613 ~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .||||+|+..|+  .+++++|+++++
T Consensus       251 ~TpL~~A~~~g~--~~iv~~Ll~~~~  274 (276)
T 4hbd_A          251 STALMVALDAGQ--SEIASMLYSRMN  274 (276)
T ss_dssp             CCHHHHHHHHTC--HHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCC--HHHHHHHHhccC
Confidence            999999999998  899999998763

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.85  E-value=3.1e-21  Score=190.59  Aligned_cols=179  Identities=21%  Similarity=0.213  Sum_probs=138.4

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccch-------hhHHHHHhhhhcccc---CCCcccccccccCCcc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISS-------LTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSS  526 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~-------~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~  526 (638)
                      ...|+.|+..++.+ ++++|++.|+++|..+..+..+.+       ..++++|+..+....   ....++++.+...+..
T Consensus        41 ~t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  119 (231)
T 3aji_A           41 RTALHWACSAGHTE-IVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH  119 (231)
T ss_dssp             CCHHHHHHHHTCHH-HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCcHH-HHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            35677888887765 456777899999998877643333       355556655432211   1223445555555666


Q ss_pred             cccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          527 SGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      ..+.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       120 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  199 (231)
T 3aji_A          120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY  199 (231)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Confidence            77778888888998888889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             CccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          607 AVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       607 ~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+|..|.|||++|+..++  .+++++|+++||
T Consensus       200 ~~~~~g~t~l~~A~~~~~--~~i~~lL~~~~a  229 (231)
T 3aji_A          200 IENKEEKTPLQVAKGGLG--LILKRLAEGEEA  229 (231)
T ss_dssp             CCCTTSCCHHHHSCHHHH--HHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhhHH--HHHHHHHccccc
Confidence            999999999999988776  788888888763

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.85  E-value=2.4e-21  Score=194.93  Aligned_cols=179  Identities=23%  Similarity=0.179  Sum_probs=124.2

Q ss_pred             cceecccccc------------cchhhhhhhcccccCcccc-ccchhcc-------chhhHHHHHhhhhcccc---CCCc
Q 006616          458 HQIWEGVRTN------------DKKAVYRHIVNFEVDVNAV-YEQVSCI-------SSLTLAKAMLLNEQTSL---ERSS  514 (638)
Q Consensus       458 ~~L~~Av~~~------------d~~~v~~lLl~~gaDvN~~-~~~~~~~-------~~~~l~~~ll~~~~~~~---~~~~  514 (638)
                      ..|+.|+..|            +...+++.|+..|++++.. +..+..+       .+..+++.|+..+....   ....
T Consensus        12 tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~   91 (253)
T 1yyh_A           12 TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR   91 (253)
T ss_dssp             ----------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            4677777765            2556777888999999764 4555333       34466777766543321   1223


Q ss_pred             ccccccccCCcccccccccCCCC-CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHH
Q 006616          515 SSLTGNSSDRSSSGSLNLAGTSE-GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM  593 (638)
Q Consensus       515 ~~l~~~~~~~~~~~~~lL~~~~~-~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~  593 (638)
                      ++++.+...+...++.+|+..++ +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        92 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~  171 (253)
T 1yyh_A           92 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD  171 (253)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            44454555556667777777776 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          594 FAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       594 ~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++++|+++|++++.+|..|.||||+|+..|+  .+++++|+++||
T Consensus       172 ~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~--~~~v~~Ll~~ga  214 (253)
T 1yyh_A          172 AAVVLLKNGANKDMQNNREETPLFLAAREGS--YETAKVLLDHFA  214 (253)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHCCC--HHHHHHHHHcCC
Confidence            9999999999999999999999999999998  899999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.85  E-value=6.6e-22  Score=196.59  Aligned_cols=155  Identities=22%  Similarity=0.241  Sum_probs=129.2

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..++.+ ++++|++.|+|+|..+..+.                       ++++.+...+...++.+|+..++
T Consensus        47 t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~~~~g~-----------------------t~L~~A~~~~~~~~v~~Ll~~~~  102 (236)
T 1ikn_D           47 TPLHLAVITNQPE-IAEALLGAGCDPELRDFRGN-----------------------TPLHLACEQGCLASVGVLTQSCT  102 (236)
T ss_dssp             CHHHHHHHTTCHH-HHHCCCSCCCCSCCCCTTCC-----------------------CHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             CHHHHHHHcCCHH-HHHHHHHcCCCCCCcCCCCC-----------------------CHHHHHHHcCCHHHHHHHHhccc
Confidence            5677787777654 55677789999998776652                       22233333344455556666665


Q ss_pred             C------CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccC
Q 006616          538 G------QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR  610 (638)
Q Consensus       538 ~------~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~  610 (638)
                      +      ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       103 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  182 (236)
T 1ikn_D          103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY  182 (236)
T ss_dssp             TTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCT
T ss_pred             chhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccC
Confidence            4      567788899999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          611 EGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       611 ~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .|.|||++|+..|+  .+++++|+++||
T Consensus       183 ~g~tpl~~A~~~~~--~~~~~~Ll~~ga  208 (236)
T 1ikn_D          183 QGYSPYQLTWGRPS--TRIQQQLGQLTL  208 (236)
T ss_dssp             TCCCGGGGCTTSSC--HHHHHHHHTTSC
T ss_pred             CCCCHHHHHHccCc--hHHHHHHHHcch
Confidence            99999999999998  899999999986

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.85  E-value=6.7e-21  Score=188.98  Aligned_cols=166  Identities=19%  Similarity=0.208  Sum_probs=85.1

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc----CCCcccccccccCCcc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL----ERSSSSLTGNSSDRSS  526 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~----~~~~~~l~~~~~~~~~  526 (638)
                      ..|+.|+..++.+ ++++|++.|+++|..+..+..+       .+..++++++.......    ....++++.+...+..
T Consensus        46 t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~  124 (237)
T 3b7b_A           46 TPLMEAAENNHLE-AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV  124 (237)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHhCCHH-HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH
Confidence            3455566555543 3345556666666655544222       22233444443321110    1112233333333444


Q ss_pred             cccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          527 SGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      .++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       125 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CccCCCCCHHHHHHHcCC
Q 006616          607 AVNREGKTSLELAVESNF  624 (638)
Q Consensus       607 ~~d~~g~TpL~~A~~~g~  624 (638)
                      .+|..|.||||+|+..++
T Consensus       205 ~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          205 LKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CCCTTSCCHHHHSCTTCH
T ss_pred             ccCCCCCCHHHHHHHHHH
Confidence            555555555555555554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.85  E-value=2.6e-21  Score=197.25  Aligned_cols=176  Identities=21%  Similarity=0.202  Sum_probs=131.8

Q ss_pred             cceecccccccchhhhhhhcccccCc--------cccccchhccchh--------hHHHHHhhhhc-----cccCCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDV--------NAVYEQVSCISSL--------TLAKAMLLNEQ-----TSLERSSSS  516 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDv--------N~~~~~~~~~~~~--------~l~~~ll~~~~-----~~~~~~~~~  516 (638)
                      +.|+.|+..|+.+.| ++|++.|++.        +..+..+..+.+.        .++..++..+.     +..+.|  +
T Consensus        13 ~~L~~A~~~G~~~~v-~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~T--p   89 (269)
T 4b93_B           13 EKLLRAVADGDLEMV-RYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSS--P   89 (269)
T ss_dssp             HHHHHHHHTTCHHHH-HHHHTCC----------------------------------------CCCCTTCCCTTSCC--H
T ss_pred             hHHHHHHHcCCHHHH-HHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCC--H
Confidence            579999999998765 5566878764        3333333221111        12233333221     222333  4


Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      |+.+...+...++.+|+..+++++..+..|.||||+|+..++.+++++|+++|+++|.+|..|+||||+|+..|+.++|+
T Consensus        90 Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~  169 (269)
T 4b93_B           90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVA  169 (269)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHH
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            44455566667788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +||++|++++.+|..|.||||+|+..|+  .++|++|+++||
T Consensus       170 ~Ll~~gadvn~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~Ga  209 (269)
T 4b93_B          170 LLLQHGASINASNNKGNTALHEAVIEKH--VFVVELLLLHGA  209 (269)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHHHCCCCCCccccCCCcHHHHHHHcCC--HHHHHHHHHCCC
Confidence            9999999999999999999999999998  899999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.85  E-value=9.5e-22  Score=200.02  Aligned_cols=123  Identities=27%  Similarity=0.232  Sum_probs=112.1

Q ss_pred             cccccccccCCcccccccccCCCCCCCcCCC--------------CCCcHHHHHHHhCCHHHHHHHHH---cCCCCcccC
Q 006616          514 SSSLTGNSSDRSSSGSLNLAGTSEGQTMDDL--------------EGCTLLHLACDSADIGMLELLLQ---YGANINATD  576 (638)
Q Consensus       514 ~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~--------------~G~TpLh~Aa~~g~~~~v~~Ll~---~gadvn~~d  576 (638)
                      .++|+.+...+...++.+|+..|++++..+.              .|.||||+|+..|+.+++++||+   +|+++|.+|
T Consensus       102 ~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d  181 (273)
T 2pnn_A          102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD  181 (273)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeC
Confidence            4445555566677788889999999999987              79999999999999999999999   999999999


Q ss_pred             CCCCcHHHHHHHhCC---------HHHHHHHHhCCCCCC-------CccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          577 SRGLTPLHRCILRGK---------AMFAKLLLTRGADPR-------AVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       577 ~~G~TpLh~A~~~g~---------~~~v~lLl~~gad~~-------~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ..|+||||+|+..|+         .+++++|+++|++++       .+|..|.||||+|+..|+  .++|++|+++||
T Consensus       182 ~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~--~~iv~~Ll~~ga  257 (273)
T 2pnn_A          182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK--IGVLAYILQREI  257 (273)
T ss_dssp             TTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh--HHHHHHHHHCCC
Confidence            999999999999998         899999999999997       489999999999999998  999999999886

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=4.9e-22  Score=191.13  Aligned_cols=153  Identities=13%  Similarity=0.055  Sum_probs=125.3

Q ss_pred             cceecccccccchhhhhhhcccccCccccc-cchhccchhhHHHHHhhhhccccCCCcccccccccCC--cccccccccC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVY-EQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDR--SSSGSLNLAG  534 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~-~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~--~~~~~~lL~~  534 (638)
                      ..||.|++.|+.+.+..++ ..  ++|..+ ..+                     .+++++++...+.  ...++.+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~-~~--~~~~~~~~~g---------------------~T~Lh~A~~~~~~~~~~~iv~~Ll~   63 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELF-EK--GYEDKESVLK---------------------SNILYDVLRNNNDEARYKISMFLIN   63 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHH-HH--SSSCHHHHHT---------------------TTHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHH-hc--CcccccccCC---------------------CCHHHHHHHcCCcchHHHHHHHHHH
Confidence            5799999999999887666 33  455444 222                     3444444333221  1236778889


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHhCC------HHHHHHHHHcCCCCcccCCCCC-cHHHHHHHhC-----CHHHHHHHHh-C
Q 006616          535 TSEGQTMDDLEGCTLLHLACDSAD------IGMLELLLQYGANINATDSRGL-TPLHRCILRG-----KAMFAKLLLT-R  601 (638)
Q Consensus       535 ~~~~~~~~d~~G~TpLh~Aa~~g~------~~~v~~Ll~~gadvn~~d~~G~-TpLh~A~~~g-----~~~~v~lLl~-~  601 (638)
                      .|+++|..|.+|+||||+|+..|+      .+++++||++|+++|.+|..|+ ||||+|+..+     +.+++++|++ +
T Consensus        64 ~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~  143 (186)
T 3t8k_A           64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS  143 (186)
T ss_dssp             TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST
T ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc
Confidence            999999999999999999999987      6889999999999999999999 9999999844     4579999999 9


Q ss_pred             CCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       602 gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      |++++.+|..|.||||+|+..|+  .++|++|++.
T Consensus       144 gad~~~~d~~G~TpL~~A~~~~~--~~~v~~L~~~  176 (186)
T 3t8k_A          144 GLQLLIKDKWGLTALEFVKRCQK--PIALKMMEDY  176 (186)
T ss_dssp             TCCTTCCCTTSCCHHHHHHTTTC--HHHHHHHHHH
T ss_pred             CCCCcccCCCCCCHHHHHHHcCC--HHHHHHHHHH
Confidence            99999999999999999999998  8999999863

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1e-20  Score=159.84  Aligned_cols=92  Identities=39%  Similarity=0.594  Sum_probs=88.6

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCC
Q 006616          545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF  624 (638)
Q Consensus       545 ~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~  624 (638)
                      +|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcHHHHHHHhhCCC
Q 006616          625 ADSEVLAILSDSHG  638 (638)
Q Consensus       625 ~d~eiv~lLle~ga  638 (638)
                        .+++++|+++||
T Consensus        81 --~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 --LEVVKLLLEAGA   92 (93)
T ss_dssp             --HHHHHHHHHTTC
T ss_pred             --HHHHHHHHHcCC
Confidence              899999999997

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.84  E-value=4.7e-21  Score=173.88  Aligned_cols=120  Identities=28%  Similarity=0.413  Sum_probs=110.7

Q ss_pred             cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHH
Q 006616          516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA  595 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v  595 (638)
                      .++.+...+....+..|+..|++++..|..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++
T Consensus        17 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v   96 (136)
T 2jab_A           17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIA   96 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHH
Confidence            34455555666677788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616          596 KLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~g  637 (638)
                      ++|+++|++++.+|..|.||||+|+..|+  .+++++|++.|
T Consensus        97 ~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~--~~~~~~Ll~~G  136 (136)
T 2jab_A           97 EVLLKHGADVNAQDKFGKTAFDISIGNGN--EDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHC-
T ss_pred             HHHHHcCCCCcCcCCCCCCHHHHHHHCCC--HHHHHHHHHcC
Confidence            99999999999999999999999999998  89999999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.84  E-value=7.6e-22  Score=197.18  Aligned_cols=154  Identities=23%  Similarity=0.265  Sum_probs=109.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..++.+.+ +.|++.|+|+|.. ..+                       .+.++.+...+....+.+|+..|+
T Consensus         7 t~L~~a~~~~~~~~~-~~ll~~g~~~~~~-~~~-----------------------~t~L~~A~~~g~~~~v~~Ll~~g~   61 (239)
T 1ycs_B            7 VSLPPGKRTNLRKTG-SERIAHGMRVKFN-PLP-----------------------LALLLDSSLEGEFDLVQRIIYEVD   61 (239)
T ss_dssp             --------------------------------C-----------------------HHHHHHHHHHTCHHHHHHHTSTTS
T ss_pred             ccCchhhhhhhHHHH-HHHhccCCCcccC-chh-----------------------hHHHHHHHHcCCHHHHHHHHHcCC
Confidence            457778877666655 5666999999853 211                       123344444556667788889999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCC-CHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGK-TSL  616 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~-TpL  616 (638)
                      +++..|..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.++..|. |||
T Consensus        62 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l  141 (239)
T 1ycs_B           62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA  141 (239)
T ss_dssp             SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998887 999


Q ss_pred             HHH--HHcCCCcHHHHHHHhhCCC
Q 006616          617 ELA--VESNFADSEVLAILSDSHG  638 (638)
Q Consensus       617 ~~A--~~~g~~d~eiv~lLle~ga  638 (638)
                      |+|  +..|+  .+++++|+++|+
T Consensus       142 ~~a~~~~~g~--~~~~~~Ll~~~a  163 (239)
T 1ycs_B          142 DKCEEMEEGY--TQCSQFLYGVQE  163 (239)
T ss_dssp             HHCCSSSTTC--CCHHHHHHHHHH
T ss_pred             HHHHHhhhcc--HHHHHHHHHhhh
Confidence            999  67777  679999998763

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.84  E-value=9.4e-21  Score=186.58  Aligned_cols=121  Identities=21%  Similarity=0.207  Sum_probs=102.9

Q ss_pred             cccccccCCcccccccccCCC--CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHH
Q 006616          516 SLTGNSSDRSSSGSLNLAGTS--EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM  593 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~--~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~  593 (638)
                      +++.+...+...++.+|+..|  ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        75 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            334444445566677777777  888888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCC-CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHh-hCCC
Q 006616          594 FAKLLLTRG-ADPRAVNREGKTSLELAVESNFADSEVLAILS-DSHG  638 (638)
Q Consensus       594 ~v~lLl~~g-ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLl-e~ga  638 (638)
                      ++++|+++| ++++.+|..|.||||+|+..|+  .+++++|+ ++|+
T Consensus       155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~--~~~v~~Ll~~~ga  199 (228)
T 2dzn_A          155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGH--GDAAVLLVEKYGA  199 (228)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHCC
T ss_pred             HHHHHHhcCcccccCcCCCCCCHHHHHHHcCC--HHHHHHHHHhcCC
Confidence            999999998 9999999999999999999987  88999998 6664

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.84  E-value=8.3e-21  Score=188.44  Aligned_cols=178  Identities=22%  Similarity=0.186  Sum_probs=126.1

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccc-------hhhHHHHHhhhhc----c---ccCCCcccccccccC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCIS-------SLTLAKAMLLNEQ----T---SLERSSSSLTGNSSD  523 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~-------~~~l~~~ll~~~~----~---~~~~~~~~l~~~~~~  523 (638)
                      ..|+.|+..++.+ ++++|++.|+++|..+..+..+.       +..+++.++....    .   ......++++.+...
T Consensus        48 t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~  126 (241)
T 1k1a_A           48 TPLHLAVITTLPS-VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT  126 (241)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHH-HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc
Confidence            5677788777654 56777799999998877663332       3345555554332    1   011223344444455


Q ss_pred             CcccccccccCCCCCCCcCC-CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q 006616          524 RSSSGSLNLAGTSEGQTMDD-LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG  602 (638)
Q Consensus       524 ~~~~~~~lL~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g  602 (638)
                      +....+.+|+..|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       127 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  206 (241)
T 1k1a_A          127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  206 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            55667777778888888877 67888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          603 ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       603 ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++++.+|..|.|||++|+..|+  .++++.|++.++
T Consensus       207 a~~~~~~~~g~tpl~~A~~~~~--~~i~~~l~~~~a  240 (241)
T 1k1a_A          207 ADSSLKNCHNDTPLMVARSRRV--IDILRGKATRPA  240 (241)
T ss_dssp             CCTTCCCTTSCCTTTTCSSHHH--HHHHTC------
T ss_pred             CCCCCcCCCCCCHHHHHHhcCc--HHHHhhhccCCC
Confidence            8888888888888888888877  778888877654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.84  E-value=1.7e-21  Score=206.74  Aligned_cols=179  Identities=17%  Similarity=0.169  Sum_probs=150.7

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhccccC-CCcccccccccCCcccc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSLE-RSSSSLTGNSSDRSSSG  528 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~~-~~~~~l~~~~~~~~~~~  528 (638)
                      ...|+.|+..|+.+.| ++|++.|+|+|..+..+..+       .+..++++|+..+..... ...++++.+...+...+
T Consensus        21 ~t~L~~Aa~~g~~~~v-~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~   99 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEV-RRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDL   99 (364)
T ss_dssp             HHHHHHHHHHTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHcCCHHHH-HHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHH
Confidence            3578889988887765 55668999999988877443       345677777766543322 34455666666677777


Q ss_pred             cccccCC----CCCCCc-----------------CCCCCCcHHHHHHHhC--CHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 006616          529 SLNLAGT----SEGQTM-----------------DDLEGCTLLHLACDSA--DIGMLELLLQYGANINATDSRGLTPLHR  585 (638)
Q Consensus       529 ~~lL~~~----~~~~~~-----------------~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~gadvn~~d~~G~TpLh~  585 (638)
                      +.+|+..    +++++.                 .|..|.||||+|+..|  +.++|++|+++|++++.+|..|+||||+
T Consensus       100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  179 (364)
T 3ljn_A          100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR  179 (364)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            7788877    777776                 8889999999999999  9999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhCCCC-----CCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          586 CILRGKAMFAKLLLTRGAD-----PRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       586 A~~~g~~~~v~lLl~~gad-----~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |+..|+.++|++|+++|++     ++..|..|.||||+|+..|+  .++|++|+++||
T Consensus       180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~ga  235 (364)
T 3ljn_A          180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW--EDVAMRFVEMGI  235 (364)
T ss_dssp             HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC--HHHHHHHHTTTC
T ss_pred             HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC--HHHHHHHHHcCC
Confidence            9999999999999999999     99999999999999999998  899999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.84  E-value=8.6e-21  Score=188.48  Aligned_cols=155  Identities=23%  Similarity=0.287  Sum_probs=131.8

Q ss_pred             cceecccccccchhhhhhhccccc----CccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCccccccccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEV----DVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLA  533 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~ga----DvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~  533 (638)
                      ..|+.|+..|+...|.. |++.+.    ++|..+..+                       .++|+.+...+...++.+|+
T Consensus        10 t~L~~A~~~g~~~~v~~-Ll~~~~~~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~v~~Ll   65 (236)
T 1ikn_D           10 SFLHLAIIHEEKALTME-VIRQVKGDLAFLNFQNNLQ-----------------------QTPLHLAVITNQPEIAEALL   65 (236)
T ss_dssp             CTTHHHHHTTCSSSSSC-CCC-----CCCCCCCCTTC-----------------------CCHHHHHHHTTCHHHHHCCC
T ss_pred             chhHHHHHcCChhHHHH-HHHHhhccHHHhhccCCCC-----------------------CCHHHHHHHcCCHHHHHHHH
Confidence            56888998888766544 445554    788777655                       23344444556677888899


Q ss_pred             CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC------CcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          534 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN------INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       534 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad------vn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      ..|++++..|..|.||||+|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus        66 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  145 (236)
T 1ikn_D           66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA  145 (236)
T ss_dssp             SCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999986      577888999999999999999999999999999999


Q ss_pred             ccC-CCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNR-EGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~-~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++. .|.||||+|+..|+  .++|++|+++||
T Consensus       146 ~~~~~g~tpL~~A~~~~~--~~~v~~Ll~~ga  175 (236)
T 1ikn_D          146 QEPCNGRTALHLAVDLQN--PDLVSLLLKCGA  175 (236)
T ss_dssp             CCTTTCCCHHHHHHHTTC--HHHHHHHHTTTC
T ss_pred             CCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            998 99999999999998  899999999986

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.84  E-value=2e-21  Score=191.98  Aligned_cols=146  Identities=18%  Similarity=0.178  Sum_probs=82.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccc-------hhhHHHHHhhhhcccc---CCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCIS-------SLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~-------~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..++.+ ++++|++.|+|+|..+..+..+.       +..+++.++..+....   ....++++.+...+...
T Consensus        75 t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  153 (231)
T 3aji_A           75 SPLHIAASAGXDE-IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK  153 (231)
T ss_dssp             CHHHHHHHHTCHH-HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCHHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            3455555555443 44555566666666655442222       2344444443322111   11223333333344455


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD  604 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad  604 (638)
                      ++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus       154 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            55566666666666666667777777766677777777766776666666677777776666666666666666554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.83  E-value=1.2e-20  Score=197.55  Aligned_cols=179  Identities=20%  Similarity=0.185  Sum_probs=145.1

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc---CCCcccccccccCCcc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSS  526 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~  526 (638)
                      ...|+.|+..|+.+ ++++|++.|+|+|..+..+..+       .+..++++|+..+....   ....++++.+...+..
T Consensus        59 ~t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  137 (351)
T 3utm_A           59 STPLHLAAGYNRVR-IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV  137 (351)
T ss_dssp             CCHHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCHH-HHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            35778888877765 5567779999999988776443       34567777776543221   1233455555666677


Q ss_pred             cccccccCCCCCCCcCC------------------------------------------------------CCCCcHHHH
Q 006616          527 SGSLNLAGTSEGQTMDD------------------------------------------------------LEGCTLLHL  552 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d------------------------------------------------------~~G~TpLh~  552 (638)
                      .++.+|+..|++++..+                                                      ..|.||||+
T Consensus       138 ~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~  217 (351)
T 3utm_A          138 EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHC  217 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHH
T ss_pred             HHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHH
Confidence            78888888898887654                                                      456789999


Q ss_pred             HHHh---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHH
Q 006616          553 ACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEV  629 (638)
Q Consensus       553 Aa~~---g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~ei  629 (638)
                      |+..   +..+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+  .++
T Consensus       218 A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~--~~~  295 (351)
T 3utm_A          218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH--LQT  295 (351)
T ss_dssp             HHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC--HHH
T ss_pred             HHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc--HHH
Confidence            9988   55899999999999999999999999999999999999999999999999999999999999999998  899


Q ss_pred             HHHHhhCCC
Q 006616          630 LAILSDSHG  638 (638)
Q Consensus       630 v~lLle~ga  638 (638)
                      |++|+++||
T Consensus       296 v~~Ll~~ga  304 (351)
T 3utm_A          296 CRLLLSYGS  304 (351)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHcCC
Confidence            999999986

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.83  E-value=8.2e-21  Score=202.63  Aligned_cols=179  Identities=15%  Similarity=0.209  Sum_probs=145.2

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccc-------hhhHHHHHhhhh--------ccccCCCcccccccc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCIS-------SLTLAKAMLLNE--------QTSLERSSSSLTGNS  521 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~-------~~~l~~~ll~~~--------~~~~~~~~~~l~~~~  521 (638)
                      ...|+.|+..++.+ ++++|++.|+|+|..+..+....       +..++++|+...        .+..+.+++++++..
T Consensus       167 ~TpL~~A~~~g~~~-iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~  245 (373)
T 2fo1_E          167 NTPLMLAVLARRRR-LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN  245 (373)
T ss_dssp             CCHHHHHHHHTCHH-HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred             CCHHHHHHHcChHH-HHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh
Confidence            35788888877765 56777899999999887764333       345666666543        122334444444433


Q ss_pred             cC-CcccccccccCCCCCCCc--------CCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHhCC
Q 006616          522 SD-RSSSGSLNLAGTSEGQTM--------DDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGK  591 (638)
Q Consensus       522 ~~-~~~~~~~lL~~~~~~~~~--------~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~  591 (638)
                      .+ ....++.+|+..|++++.        .|..|.||||+|+..|+.++|++|+++| +++|.+|..|+||||+|+..|+
T Consensus       246 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~  325 (373)
T 2fo1_E          246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR  325 (373)
T ss_dssp             CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence            22 156677888899999886        6778999999999999999999999886 9999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          592 AMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       592 ~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .++|++|+++|++++.+|..|.|||++|+..|+  .+||++|+++++
T Consensus       326 ~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~--~~iv~~Ll~~~a  370 (373)
T 2fo1_E          326 IEVVMYLIQQGASVEAVDATDHTARQLAQANNH--HNIVDIFDRCRP  370 (373)
T ss_dssp             HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC--HHHHHHHHTTC-
T ss_pred             HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC--HHHHHHHHhcCc
Confidence            999999999999999999999999999999998  999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.83  E-value=1.9e-20  Score=183.83  Aligned_cols=169  Identities=24%  Similarity=0.194  Sum_probs=137.4

Q ss_pred             cchhhhhhhcccccCcccc-ccchhc-------cchhhHHHHHhhhhcccc---CCCcccccccccCCcccccccccCCC
Q 006616          468 DKKAVYRHIVNFEVDVNAV-YEQVSC-------ISSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       468 d~~~v~~lLl~~gaDvN~~-~~~~~~-------~~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      +..++++.|++.|++++.. +..+..       ..+..+++.++..+....   ....++++.+...+...++.+|+..+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4456678888999999875 444422       334566777776543321   12234555555566666777777776


Q ss_pred             C-CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCH
Q 006616          537 E-GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS  615 (638)
Q Consensus       537 ~-~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~Tp  615 (638)
                      + +++..+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  161 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  161 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence            6 899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHhhCCC
Q 006616          616 LELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||+|+..|+  .+++++|+++|+
T Consensus       162 L~~A~~~~~--~~~v~~Ll~~ga  182 (223)
T 2f8y_A          162 LFLAAREGS--YETAKVLLDHFA  182 (223)
T ss_dssp             HHHHHHHTC--HHHHHHHHHTTC
T ss_pred             HHHHHHcCC--HHHHHHHHHcCC
Confidence            999999998  899999999985

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.83  E-value=5.6e-21  Score=200.45  Aligned_cols=153  Identities=20%  Similarity=0.151  Sum_probs=126.6

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCccccccccc--CCcccccccccCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSS--DRSSSGSLNLAGT  535 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~--~~~~~~~~lL~~~  535 (638)
                      ..|+.|+..|+.+.|..||.+.|+|||..+..+...                     ++..+...  .....++.+|+..
T Consensus       170 T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~---------------------l~~~~~~~~~~~~~~i~~lLl~~  228 (337)
T 4g8k_A          170 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA---------------------LIHALLSSDDSDVEAITHLLLDH  228 (337)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCH---------------------HHHHHHHSCTTTHHHHHHHHHHT
T ss_pred             cHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcH---------------------HHHHHHHcCcccHHHHHHHHHHC
Confidence            468889988887765444445799999988766222                     11111111  1223356678899


Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCC
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKT  614 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~T  614 (638)
                      |++++..|..|+||||+|+..|+.+++++|+.. |+++|.+|..|+||||+|+..|+.++|++||++||+++.+     +
T Consensus       229 gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~  303 (337)
T 4g8k_A          229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----D  303 (337)
T ss_dssp             TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----C
T ss_pred             CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----C
Confidence            999999999999999999999999999999985 8999999999999999999999999999999999999764     5


Q ss_pred             HHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          615 SLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       615 pL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |||+|+..|+  .+||++|+++||
T Consensus       304 ~L~~A~~~~~--~~iv~~Ll~~GA  325 (337)
T 4g8k_A          304 LVMTARRNYD--HSLVKVLLSHGA  325 (337)
T ss_dssp             HHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHHHHHHcCC--HHHHHHHHHCcC
Confidence            9999999998  899999999997

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.83  E-value=2.1e-20  Score=189.60  Aligned_cols=178  Identities=20%  Similarity=0.177  Sum_probs=145.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc-------------CCCcccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL-------------ERSSSSL  517 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~-------------~~~~~~l  517 (638)
                      ..|+.|+..++.+ ++++|++.|+++|..+..+..+       .+..++++++..+....             .....++
T Consensus        74 t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L  152 (285)
T 1wdy_A           74 TPFLLAAIAGSVK-LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL  152 (285)
T ss_dssp             CHHHHHHHHTCHH-HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred             CHHHHHHHcCCHH-HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence            5677888777765 5567779999999888766433       33456666665433221             1123444


Q ss_pred             cccccCCcccccccccCC-CCCCCcCCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCH
Q 006616          518 TGNSSDRSSSGSLNLAGT-SEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGANINATDSRGLTPLHRCILRGKA  592 (638)
Q Consensus       518 ~~~~~~~~~~~~~lL~~~-~~~~~~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~  592 (638)
                      +.+...+....+..|+.. |++++..|..|.||||+|+..++    .+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus       153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  232 (285)
T 1wdy_A          153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL  232 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            545455555666666655 99999999999999999999999    9999999999999999999999999999999999


Q ss_pred             HHHHHHHh-CCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          593 MFAKLLLT-RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       593 ~~v~lLl~-~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +++++|++ .|++++.+|..|.||||+|+..|+  .+++++|+++||
T Consensus       233 ~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~--~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKL--KKIAELLCKRGA  277 (285)
T ss_dssp             HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSS
T ss_pred             HHHHHHHhccCCCccccCCCCCcHHHHHHHcCc--HHHHHHHHHcCC
Confidence            99999999 899999999999999999999998  899999999986

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.82  E-value=3.6e-20  Score=162.71  Aligned_cols=96  Identities=19%  Similarity=0.353  Sum_probs=76.0

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEe----cCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYR----KQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~----~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      +.++|||+|+++...|.||||||||.+ ..||||+    ++.+                                     
T Consensus         8 ~~~~G~L~KqG~~~~K~WKrRwFVL~~-~~LyYfk~~~~~~~~-------------------------------------   49 (126)
T 1wi1_A            8 MKHSGYLWAIGKNVWKRWKKRFFVLVQ-VSQYTFAMCSYREKK-------------------------------------   49 (126)
T ss_dssp             EEEEEEEEEECSSSCCSCEEEEEEEEE-EETTEEEEEECCSSS-------------------------------------
T ss_pred             CceeEEEEEeCCCcccccceEEEEEeC-CEEEEEEcccccccC-------------------------------------
Confidence            579999999977667899999999994 5677776    3321                                     


Q ss_pred             ccccccceeecccceeec---CCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKV---DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~---~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                        ..+.+.|.|..++|..   .++...++|+|+|+.++++|+|+|+|++||++||+||..++.
T Consensus        50 --~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~~  110 (126)
T 1wi1_A           50 --AEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             --SCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             --CCCceEEECCCcEEEEecCCcccccCceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHhc
Confidence              1233457788888773   333356889999999999999999999999999999999874

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=191.77  Aligned_cols=176  Identities=18%  Similarity=0.173  Sum_probs=142.8

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc---CCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..|+.+.| ++|++.|+|+|..+..+..+       .+..+++.|+..+....   ....++++.+...+...
T Consensus        61 t~L~~Aa~~g~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~  139 (285)
T 3d9h_A           61 SPMHEAAIHGHQLSL-RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD  139 (285)
T ss_dssp             CHHHHHHHTTCHHHH-HHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHcCCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH
Confidence            568888888887654 56668999999988777443       33466666665432211   12234455555556677


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      ++.+|+..|++++..+ .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus       140 ~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  218 (285)
T 3d9h_A          140 CVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ  218 (285)
T ss_dssp             HHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC
Confidence            7888889999988655 499999999999999999999999999999999999999999999999999999999999995


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                       |..|.||||+|+..|+  .+++++|+++|+
T Consensus       219 -~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga  246 (285)
T 3d9h_A          219 -GKGQDSPLHAVVRTAS--EELACLLMDFGA  246 (285)
T ss_dssp             -CBTTBCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             -CCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence             8899999999999998  899999999886

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.82  E-value=4.1e-20  Score=200.86  Aligned_cols=178  Identities=17%  Similarity=0.244  Sum_probs=138.2

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc---CCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..++.+ ++++|++.|++++..+..+..+       .+..+++.|+..+....   ....++++.+...+...
T Consensus       181 t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  259 (437)
T 1n11_A          181 TPLHVAVHHNNLD-IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE  259 (437)
T ss_dssp             CHHHHHHHTTCHH-HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHH-HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            4677777777654 5567778899888776555332       33456666665432211   12234455555566677


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      ++.+|+..+++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus       260 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~  339 (437)
T 1n11_A          260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA  339 (437)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC
Confidence            77888888999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|..|.||||+|+..|+  .++|++|+++||
T Consensus       340 ~~~~g~t~L~~A~~~g~--~~iv~~Ll~~ga  368 (437)
T 1n11_A          340 KTKLGYSPLHQAAQQGH--TDIVTLLLKNGA  368 (437)
T ss_dssp             CCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHCCh--HHHHHHHHHCcC
Confidence            99999999999999987  889999998875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.82  E-value=9.5e-21  Score=192.46  Aligned_cols=155  Identities=25%  Similarity=0.315  Sum_probs=132.1

Q ss_pred             cceecccccccchhhhhhhcccccC---ccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVD---VNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG  534 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaD---vN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~  534 (638)
                      ..|+.|+..|+... +++|++.|++   +|..+..+                     .+  +|+.+...+...++.+|+.
T Consensus        11 t~L~~A~~~g~~~~-v~~Ll~~g~~~~~~~~~~~~g---------------------~t--~L~~A~~~g~~~~v~~Ll~   66 (282)
T 1oy3_D           11 TALHLAVIHQHEPF-LDFLLGFSAGHEYLDLQNDLG---------------------QT--ALHLAAILGEASTVEKLYA   66 (282)
T ss_dssp             CHHHHHHHTTCHHH-HHHHHHHHTTSGGGGCCCTTS---------------------CC--HHHHHHHHTCHHHHHHHHH
T ss_pred             cHHHHHHHcCCHHH-HHHHHhcCCCcccccccCCCC---------------------CC--HHHHHHHcCCHHHHHHHHH
Confidence            56888888887664 5667788998   56555544                     23  3344444556677888899


Q ss_pred             CCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC-------------------------------------------
Q 006616          535 TSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGAN-------------------------------------------  571 (638)
Q Consensus       535 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-------------------------------------------  571 (638)
                      .|++++..|..|.||||+|+..|+.+++++|+++|++                                           
T Consensus        67 ~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (282)
T 1oy3_D           67 AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED  146 (282)
T ss_dssp             TTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh
Confidence            9999999999999999999999999999999998865                                           


Q ss_pred             ----CcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCC-CCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          572 ----INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE-GKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       572 ----vn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~-g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                          ++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+  .++|++|+++|+
T Consensus       147 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~--~~~v~~Ll~~ga  216 (282)
T 1oy3_D          147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA--ASVLELLLKAGA  216 (282)
T ss_dssp             GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCC--HHHHHHHHHcCC
Confidence                7788999999999999999999999999999999999865 9999999999998  899999999986

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=8.8e-20  Score=160.84  Aligned_cols=102  Identities=27%  Similarity=0.482  Sum_probs=82.8

Q ss_pred             CCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           94 KGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        94 ~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      +....++++|||+|++...++.|+||||||+ ++.|+||++....+                                  
T Consensus         5 ~~~~~~~~~G~L~K~~~~~~k~WkkR~fvL~-~~~L~yyk~~~~~~----------------------------------   49 (114)
T 2da0_A            5 SSGYGSEKKGYLLKKSDGIRKVWQRRKCSVK-NGILTISHATSNRQ----------------------------------   49 (114)
T ss_dssp             CCCCCSCEEEEEEEECSSSCCCEEEEEEEEE-TTEEEECCSSCCSC----------------------------------
T ss_pred             CCCCCccEEEEEEEeCCCCCCCceeEEEEEe-CCEEEEEcCCCCCC----------------------------------
Confidence            3445678999999997655589999999997 77888887754321                                  


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                            ...+.+..|.|++.   .+++|||+|+++.++|+|+|+|++|+++||.+|+.+|..+++.
T Consensus        50 ------~~~i~l~~~~v~~~---~~~~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  106 (114)
T 2da0_A           50 ------PAKLNLLTCQVKPN---AEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTM  106 (114)
T ss_dssp             ------CEEEETTTSEEEEC---SSSSSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ------CCEEEeeeeEEEEC---CCCCCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHh
Confidence                  23366777777743   2468999999999999999999999999999999999998876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.82  E-value=3.6e-21  Score=191.30  Aligned_cols=143  Identities=21%  Similarity=0.251  Sum_probs=116.3

Q ss_pred             hhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHH
Q 006616          474 RHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLA  553 (638)
Q Consensus       474 ~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~A  553 (638)
                      +.|++.|++++..+..+..                    ..+.|+.+...+....+..|+..|++++..|..|+||||+|
T Consensus         2 ~~ll~~~~~~~~~~~~~~~--------------------~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A   61 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLN--------------------PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA   61 (229)
T ss_dssp             --------CCCCCCCTTSC--------------------HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHH
T ss_pred             eehhccCCCCccccccccc--------------------hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            4566889999876654411                    11223444445566677778889999999999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc-CCCCCHHHHH--HHcCCCcHHHH
Q 006616          554 CDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLELA--VESNFADSEVL  630 (638)
Q Consensus       554 a~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d-~~g~TpL~~A--~~~g~~d~eiv  630 (638)
                      |..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|  +..|+  .+++
T Consensus        62 ~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~--~~~v  139 (229)
T 2vge_A           62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY--ADCA  139 (229)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTH--HHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcCh--HHHH
Confidence            99999999999999999999999999999999999999999999999999999997 6999999999  88876  8999


Q ss_pred             HHHhhCCC
Q 006616          631 AILSDSHG  638 (638)
Q Consensus       631 ~lLle~ga  638 (638)
                      ++|+++|+
T Consensus       140 ~~Ll~~ga  147 (229)
T 2vge_A          140 TYLADVEQ  147 (229)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHcCC
Confidence            99998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.81  E-value=4.5e-20  Score=163.71  Aligned_cols=118  Identities=32%  Similarity=0.437  Sum_probs=109.3

Q ss_pred             ccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHH
Q 006616          519 GNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL  598 (638)
Q Consensus       519 ~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lL  598 (638)
                      .+...+....+..|+..+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus         8 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L   87 (126)
T 1n0r_A            8 LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL   87 (126)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHH
Confidence            33344455666777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       599 l~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +++|++++.+|..|.|||++|+..|+  .+++++|+++||
T Consensus        88 l~~g~~~~~~~~~g~t~l~~A~~~~~--~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           88 LEAGADVNAKDKNGRTPLHLAARNGH--LEVVKLLLEAGA  125 (126)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHTC
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCc--HHHHHHHHHcCC
Confidence            99999999999999999999999998  999999999997

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.81  E-value=1.3e-20  Score=175.22  Aligned_cols=120  Identities=22%  Similarity=0.218  Sum_probs=109.8

Q ss_pred             cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCc-HHHHHHHhCCHHH
Q 006616          516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLT-PLHRCILRGKAMF  594 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~T-pLh~A~~~g~~~~  594 (638)
                      .|+.+...+....+..|+..|++++..|..|+||||+|+ .|+.+++++|+++|+++|.+|..|+| |||+|+..|+.++
T Consensus        15 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~   93 (156)
T 1bi7_B           15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDT   93 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHH
Confidence            444455556667778888899999999999999999985 99999999999999999999999999 9999999999999


Q ss_pred             HHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          595 AKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       595 v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +++|+++|++++.+|..|.||||+|+..|+  .+++++|+++||
T Consensus        94 v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--~~~v~~Ll~~ga  135 (156)
T 1bi7_B           94 LVVLHRAGARLDVRDAWGRLPVDLAEELGH--RDVARYLRAAAG  135 (156)
T ss_dssp             HHHHHHHTCCSSCCCTTCCCHHHHHHHHTC--HHHHHHHSSCC-
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHhCH--HHHHHHHHHcCC
Confidence            999999999999999999999999999998  899999999986

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.81  E-value=4.9e-20  Score=189.13  Aligned_cols=174  Identities=20%  Similarity=0.215  Sum_probs=143.4

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccc-------hhhHHHHHhhhhccc--cCCCcccccccccCCccc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCIS-------SLTLAKAMLLNEQTS--LERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~-------~~~l~~~ll~~~~~~--~~~~~~~l~~~~~~~~~~  527 (638)
                      ...|+.|+..++.+ ++++|++.|+|+|..+..+..+.       +..+++.|+..+...  .....++++.+...+...
T Consensus        93 ~t~L~~A~~~g~~~-~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~  171 (285)
T 3d9h_A           93 VSPLHEACLGGHLS-CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE  171 (285)
T ss_dssp             CCHHHHHHHTTCHH-HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHCCcHH-HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            35788888887765 55677799999999887764433       345666666543321  112344555556666777


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      ++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++. |..|+||||+|+..|+.+++++|+++|++++.
T Consensus       172 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~  250 (285)
T 3d9h_A          172 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQA  250 (285)
T ss_dssp             HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            88889999999999999999999999999999999999999999995 88999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      +|.+|.|||++|+..    .+++++|+++
T Consensus       251 ~d~~g~t~l~~A~~~----~~~~~~Ll~~  275 (285)
T 3d9h_A          251 KNAEGKRPVELVPPE----SPLAQLFLER  275 (285)
T ss_dssp             CCTTSCCGGGGSCTT----SHHHHHHHHH
T ss_pred             cCCCCCCHHHHhcCc----cHHHHHHHHh
Confidence            999999999999943    4799999987

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.81  E-value=6.1e-20  Score=192.50  Aligned_cols=120  Identities=25%  Similarity=0.266  Sum_probs=101.5

Q ss_pred             ccccccCCccccccccc-CCCCCCCcCCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC
Q 006616          517 LTGNSSDRSSSGSLNLA-GTSEGQTMDDLEGCTLLHLACDSAD----IGMLELLLQYGANINATDSRGLTPLHRCILRGK  591 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~-~~~~~~~~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~  591 (638)
                      |+.+...+...++.+|+ ..|++++..|..|.|+||+++..+.    ..++++|+++|+++|.+|..|+||||+|+..|+
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence            33344444445555555 5788899888889999988776554    457888999999999999999999999999999


Q ss_pred             HHHHHHHHhC-CCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          592 AMFAKLLLTR-GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       592 ~~~v~lLl~~-gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+++++|+.. |++++.+|.+|.||||+|+..|+  .++|++|+++||
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~--~~iv~~Ll~~GA  297 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL--KKIAELLCKRGA  297 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC--HHHHHHHHTTSC
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence            9999999985 89999999999999999999998  899999999996

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.81  E-value=7.9e-20  Score=171.41  Aligned_cols=123  Identities=24%  Similarity=0.229  Sum_probs=113.4

Q ss_pred             cccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHH
Q 006616          514 SSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM  593 (638)
Q Consensus       514 ~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~  593 (638)
                      .++++.+...+....+..|+..+++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD   83 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            34455555666677777888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          594 FAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       594 ~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++++|+++|++++.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~  126 (167)
T 3v31_A           84 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH--VKCVKMLLESGA  126 (167)
T ss_dssp             HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHHHHHHCCCCCCcCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            9999999999999999999999999999998  899999999885

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.81  E-value=9.2e-20  Score=180.86  Aligned_cols=179  Identities=19%  Similarity=0.242  Sum_probs=147.2

Q ss_pred             cceecccccccchhhhhhhc---ccccCccccccchhcc-------chhhHHHHHhhhhcccc---CCCcccccccccCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIV---NFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDR  524 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl---~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~  524 (638)
                      ..|+.|+..|+.+.|..+|.   ..|+++|..+..+..+       .+..++++|+..+....   ....++++.+...+
T Consensus        11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   90 (241)
T 1k1a_A           11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR   90 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            57888999998876655442   4899999988776443       33466667765443211   12234455555566


Q ss_pred             cccccccccCCCC----CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHhCCHHHHHHHH
Q 006616          525 SSSGSLNLAGTSE----GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKLLL  599 (638)
Q Consensus       525 ~~~~~~lL~~~~~----~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~lLl  599 (638)
                      ....+..|+..++    +++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+
T Consensus        91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  170 (241)
T 1k1a_A           91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL  170 (241)
T ss_dssp             CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Confidence            6667777777776    889999999999999999999999999999999999999 78999999999999999999999


Q ss_pred             hCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          600 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       600 ~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++|++++.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus       171 ~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga  207 (241)
T 1k1a_A          171 QHGANVNAQMYSGSSALHSASGRGL--LPLVRTLVRSGA  207 (241)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHhcCC
Confidence            9999999999999999999999998  899999999986

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.80  E-value=8.8e-20  Score=180.84  Aligned_cols=178  Identities=18%  Similarity=0.220  Sum_probs=149.6

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhccc---cCCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTS---LERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~---~~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..|+.+ ++++|++.|+++|..+..+..+       .+..++++++..+...   .....++++.+...+...
T Consensus        13 t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   91 (237)
T 3b7b_A           13 SPLHAAAEAGHVD-ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE   91 (237)
T ss_dssp             CHHHHHHHHTCHH-HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCcHH-HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            5688898888876 4567779999999987766333       3446677776654321   112344555555666677


Q ss_pred             ccccccCCC-CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          528 GSLNLAGTS-EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       528 ~~~lL~~~~-~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      ++.+|+..+ .+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        92 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  171 (237)
T 3b7b_A           92 VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH  171 (237)
T ss_dssp             HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            777888877 8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          607 AVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       607 ~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+|..|.||||+|+..|+  .+++++|+++|+
T Consensus       172 ~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga  201 (237)
T 3b7b_A          172 AVNIHGDSPLHIAARENR--YDCVVLFLSRDS  201 (237)
T ss_dssp             CCCTTCCCHHHHHHHTTC--HHHHHHHHTTTC
T ss_pred             CcCCCCCCHHHHHHHhCC--HhHHHHHHHcCC
Confidence            999999999999999998  899999999985

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.80  E-value=2.9e-20  Score=190.89  Aligned_cols=177  Identities=14%  Similarity=0.089  Sum_probs=136.5

Q ss_pred             cceecccccccchhhhhhhcccccCccccccch-----hccchhhHHHHHhhhhcccc---CCCcccccccccCCccccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV-----SCISSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSSGS  529 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~-----~~~~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~~~  529 (638)
                      ..|+.|+..|+.+.| ++|++.|+|+|..++..     ....+..++++|+..+....   ....++++.+...+...++
T Consensus        33 t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v  111 (285)
T 3kea_A           33 SASYYAIADNNVRLV-CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTV  111 (285)
T ss_dssp             CHHHHHHHTTCHHHH-HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHcCCHHHH-HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            578888888877654 66678999999886433     22344566777766443211   1223445555556667777


Q ss_pred             ccccCCCCCCCcCCCCC-CcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc
Q 006616          530 LNLAGTSEGQTMDDLEG-CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV  608 (638)
Q Consensus       530 ~lL~~~~~~~~~~d~~G-~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~  608 (638)
                      .+|+..|++++..|..| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+..|+.+++++|+++|++++.+
T Consensus       112 ~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~  190 (285)
T 3kea_A          112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTN  190 (285)
T ss_dssp             HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT
T ss_pred             HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcc
Confidence            78888888888888888 79999999999999999999888877332 27889999999999999999999999999999


Q ss_pred             cCCCCCH-HHHHHHcCCCcHHHHHHHhhCCC
Q 006616          609 NREGKTS-LELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       609 d~~g~Tp-L~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |..|.|| ||+|+..|+  .+++++|+++||
T Consensus       191 ~~~g~t~~L~~A~~~~~--~~~v~~Ll~~ga  219 (285)
T 3kea_A          191 NSLLFIPDIKLAIDNKD--IEMLQALFKYDI  219 (285)
T ss_dssp             CCCBCCTTHHHHHHHTC--HHHHHHHTTSCB
T ss_pred             cCCCCChHHHHHHHcCC--HHHHHHHHHcCC
Confidence            9999997 999999988  889999999885

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.80  E-value=8.7e-20  Score=175.36  Aligned_cols=120  Identities=29%  Similarity=0.329  Sum_probs=110.3

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      ++.+...+....+..|+..+++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        39 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  118 (192)
T 2rfm_A           39 LMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY  118 (192)
T ss_dssp             HHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Confidence            33344445566677788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|+++|++++.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus       119 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga  158 (192)
T 2rfm_A          119 FLLEHGANVNDRNLEGETPLIVASKYGR--SEIVKKLLELGA  158 (192)
T ss_dssp             HHHHTTCCSSCCCTTCCCHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence            9999999999999999999999999998  899999999885

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.80  E-value=1.2e-19  Score=170.99  Aligned_cols=121  Identities=31%  Similarity=0.422  Sum_probs=112.4

Q ss_pred             cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHH
Q 006616          516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA  595 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v  595 (638)
                      .+..+...+....+..|+..|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++
T Consensus        17 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   96 (169)
T 2y1l_E           17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIV   96 (169)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            34455555666777888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          596 KLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++|+++|++++.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus        97 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~  137 (169)
T 2y1l_E           97 EVLLKNGADVNANDMEGHTPLHLAAMFGH--LEIVEVLLKNGA  137 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            99999999999999999999999999998  899999999885

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.80  E-value=8.4e-21  Score=172.25  Aligned_cols=119  Identities=28%  Similarity=0.353  Sum_probs=99.8

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      ++.+...+....+..|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        14 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   93 (137)
T 3c5r_A           14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVK   93 (137)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            33333344556677788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616          597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~g  637 (638)
                      +|+++|++++.+|..|.|||++|+..++  .+++++|.+.+
T Consensus        94 ~Ll~~ga~~~~~~~~g~tpl~~A~~~~~--~~~l~~l~~~~  132 (137)
T 3c5r_A           94 LLLSYGASRNAVNIFGLRPVDYTDDESM--KSLLLLPEKNE  132 (137)
T ss_dssp             HHHHTTCCTTCCCTTSCCGGGGCCCHHH--HHHHSCC----
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHhhccH--HHHHhhccccc
Confidence            9999999999999999999999988776  67777776543

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=153.56  Aligned_cols=92  Identities=25%  Similarity=0.374  Sum_probs=73.5

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      +.|+|||+|++ +..++|+||||||+ ++.|+||..+.+                                     ....
T Consensus         1 V~k~G~L~K~g-~~~k~WkkR~FvL~-~~~L~Yy~~~~~-------------------------------------~~~~   41 (94)
T 2rsg_A            1 VERCGVLSKWT-NYIHGWQDRWVVLK-NNALSYYKSEDE-------------------------------------TEYG   41 (94)
T ss_dssp             CCEEEEEEEES-SSTTCEEEEEEEEE-TTEEEEESSTTG-------------------------------------GGTC
T ss_pred             CCEEEEEEEeC-CCCCCceEEEEEEE-CCEEEEEEeccc-------------------------------------cccc
Confidence            36899999994 56789999999998 677888876532                                     1122


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      +.+.++|..|.+....   ..++||.|.+++++|+|+|+|++|+++||+||+++
T Consensus        42 ~~~~i~l~~~~~~~~~---~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           42 CRGSICLSKAVITPHD---FDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             CSEEEETTTCEEEECS---SCSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred             ceeeEecceeeeecCc---ccceeEEEEeCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            3456778877776532   44799999999999999999999999999999976

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.80  E-value=7.2e-20  Score=195.31  Aligned_cols=180  Identities=17%  Similarity=0.179  Sum_probs=148.1

Q ss_pred             ccceecccccccchhhhhhh-------cccccCccccccchhccch-------hhHHHHHhhhhcccc---CCCcccccc
Q 006616          457 AHQIWEGVRTNDKKAVYRHI-------VNFEVDVNAVYEQVSCISS-------LTLAKAMLLNEQTSL---ERSSSSLTG  519 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lL-------l~~gaDvN~~~~~~~~~~~-------~~l~~~ll~~~~~~~---~~~~~~l~~  519 (638)
                      ...|+.|+..++.+.|..+|       ++.|+|+|..+..+.++.+       ..++++|+..+.+..   ....++++.
T Consensus       126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~  205 (373)
T 2fo1_E          126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ  205 (373)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHH
Confidence            36788899988877665443       4899999999887744433       466777776543321   123345555


Q ss_pred             cccCCcccccccccCCC---CCCCcCCCCCCcHHHHHHHhC---CHHHHHHHHHcCCCCcc--------cCCCCCcHHHH
Q 006616          520 NSSDRSSSGSLNLAGTS---EGQTMDDLEGCTLLHLACDSA---DIGMLELLLQYGANINA--------TDSRGLTPLHR  585 (638)
Q Consensus       520 ~~~~~~~~~~~lL~~~~---~~~~~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~gadvn~--------~d~~G~TpLh~  585 (638)
                      +...+...++.+|+..+   ++++..|..|.||||+|+..+   +.+++++|+++|++++.        .|..|+||||+
T Consensus       206 A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~  285 (373)
T 2fo1_E          206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY  285 (373)
T ss_dssp             HHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHH
T ss_pred             HHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHH
Confidence            66666777788888887   899999999999999999998   89999999999999986        67799999999


Q ss_pred             HHHhCCHHHHHHHHhCC-CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          586 CILRGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       586 A~~~g~~~~v~lLl~~g-ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |+..|+.++|++|+++| ++++.+|..|.||||+|+..|+  .++|++|+++||
T Consensus       286 A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~--~~iv~~Ll~~ga  337 (373)
T 2fo1_E          286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR--IEVVMYLIQQGA  337 (373)
T ss_dssp             HHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            99999999999999875 9999999999999999999998  999999999986

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.80  E-value=4.5e-20  Score=189.42  Aligned_cols=172  Identities=12%  Similarity=0.080  Sum_probs=140.4

Q ss_pred             cccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc-CCCcccccccccCCccccccccc
Q 006616          462 EGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL-ERSSSSLTGNSSDRSSSGSLNLA  533 (638)
Q Consensus       462 ~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~-~~~~~~l~~~~~~~~~~~~~lL~  533 (638)
                      .++...+...|.++|...  ++|..+..+..+       .+..+++.|+..+.... ....++++.+...+...++.+|+
T Consensus         5 s~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll   82 (285)
T 3kea_A            5 SRINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL   82 (285)
T ss_dssp             TTGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            467788899999999765  677777776443       34466677766543321 12345566666667777888899


Q ss_pred             CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCC-CcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCC
Q 006616          534 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRG-LTPLHRCILRGKAMFAKLLLTRGADPRAVNREG  612 (638)
Q Consensus       534 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G-~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g  612 (638)
                      ..|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|+++... ..|
T Consensus        83 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g  161 (285)
T 3kea_A           83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AIL  161 (285)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STH
T ss_pred             HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCC
Confidence            9999999999999999999999999999999999999999999999 79999999999999999999999887332 289


Q ss_pred             CCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          613 KTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       613 ~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .||||+|+..|+  .+++++|+++|+
T Consensus       162 ~t~L~~A~~~g~--~~~v~~Ll~~ga  185 (285)
T 3kea_A          162 LSCIHITIKNGH--VDMMILLLDYMT  185 (285)
T ss_dssp             HHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             ccHHHHHHHcCh--HHHHHHHHHcCC
Confidence            999999999998  899999998764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.79  E-value=2.4e-20  Score=195.46  Aligned_cols=150  Identities=23%  Similarity=0.167  Sum_probs=93.0

Q ss_pred             cccccchhhhhhhcccccCccc-cccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCCCCCcC
Q 006616          464 VRTNDKKAVYRHIVNFEVDVNA-VYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMD  542 (638)
Q Consensus       464 v~~~d~~~v~~lLl~~gaDvN~-~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~  542 (638)
                      +..+....++++|++.|+|||. .+..+                       .++|+.+...+...++.+|+..|++++..
T Consensus       104 a~~~~~~~~~~~l~~~g~dvn~~~d~~g-----------------------~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~  160 (327)
T 1sw6_A          104 SFDSLLQEVNDAFPNTQLNLNIPVDEHG-----------------------NTPLHWLTSIANLELVKHLVKHGSNRLYG  160 (327)
T ss_dssp             CHHHHHHHHHHHCTTSCCCSCSCCSTTC-----------------------CCHHHHHHHTTCHHHHHHHHHTTCCTTBC
T ss_pred             HHHhhHHHHHHHHHhcCCCcccccCCCC-----------------------CcHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            3344455666666677777776 45444                       22233333334455556666666666666


Q ss_pred             CCCCCcHHHHHHHhCC---HHHHHHHHHcC-CCCcccCCCCCcHHHHHHH----hCCHHHHHHHHhCCC-----------
Q 006616          543 DLEGCTLLHLACDSAD---IGMLELLLQYG-ANINATDSRGLTPLHRCIL----RGKAMFAKLLLTRGA-----------  603 (638)
Q Consensus       543 d~~G~TpLh~Aa~~g~---~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~----~g~~~~v~lLl~~ga-----------  603 (638)
                      |..|+||||+|+..|+   .++++.|++++ ++++.+|..|+||||+|+.    .|+.+++++|++.++           
T Consensus       161 d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i  240 (327)
T 1sw6_A          161 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI  240 (327)
T ss_dssp             CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCE
T ss_pred             CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHH
Confidence            6666666666666666   45556666654 5566666666666666666    666666666665532           


Q ss_pred             ----------------------------------CCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          604 ----------------------------------DPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       604 ----------------------------------d~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                                                        +++.+|..|.||||+|+..|+  .++|++|+++||
T Consensus       241 ~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~--~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN--ISIVDALLDYGA  307 (327)
T ss_dssp             EEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCC--HHHHHHHHHTTC
T ss_pred             HhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence                                              466667777777777777776  677777777765

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.79  E-value=1.9e-19  Score=177.93  Aligned_cols=178  Identities=19%  Similarity=0.201  Sum_probs=139.9

Q ss_pred             cceecccccccchhhhhhhcccccCccccccc-h-------hccchhhHHHHHhhhhcccc---CCCcccccccccCCcc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQ-V-------SCISSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSS  526 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~-~-------~~~~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~  526 (638)
                      ..|+.|+..++.+ ++++|++.|++++..... +       ....+..+++.++..+....   .....+++.+...+..
T Consensus        44 t~L~~A~~~~~~~-~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  122 (240)
T 3eu9_A           44 TLLHWAAINNRID-LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT  122 (240)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHhCCHH-HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHH
Confidence            4677777777665 556777889988865543 2       22233466666665432211   1233455555566667


Q ss_pred             cccccccCCCCCCCcCCCCCCcHHHHHHHhCC-HHHHHHHHHcCCCCcccCC-CCCcHHHHHHHhCCHHHHHHHHhCCCC
Q 006616          527 SGSLNLAGTSEGQTMDDLEGCTLLHLACDSAD-IGMLELLLQYGANINATDS-RGLTPLHRCILRGKAMFAKLLLTRGAD  604 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~-~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~lLl~~gad  604 (638)
                      .++..|+..|++++..|..|.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++
T Consensus       123 ~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  202 (240)
T 3eu9_A          123 SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN  202 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            78888888999999999999999999997766 7899999999999999887 899999999999999999999999999


Q ss_pred             CCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          605 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       605 ~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++.+|..|.|||++|+..|+  .+++++|+++++
T Consensus       203 ~~~~~~~g~t~l~~A~~~~~--~~~v~~L~~~~~  234 (240)
T 3eu9_A          203 VDAQNIKGESALDLAKQRKN--VWMINHLQEARQ  234 (240)
T ss_dssp             TTCBCTTSCBHHHHHHHTTC--HHHHHHHHHHC-
T ss_pred             CCCcCCCCCCHHHHHHHcCc--HHHHHHHHHhhh
Confidence            99999999999999999998  899999999874

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.79  E-value=2.7e-19  Score=181.41  Aligned_cols=154  Identities=26%  Similarity=0.306  Sum_probs=133.6

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..|+.+.| +.|++.|+++|......                      ..++++.+...+...++.+|+..|+
T Consensus         7 ~~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~~----------------------g~t~L~~A~~~g~~~~v~~Ll~~g~   63 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLV-QQLLEGGANVNFQEEEG----------------------GWTPLHNAVQMSREDIVELLLRHGA   63 (285)
T ss_dssp             HHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTT----------------------CCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hHHHHHHHcCCHHHH-HHHHHcCCCcccccCCC----------------------CCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            467889999988765 55668999998773222                      1234445555566778888899999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc---------
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV---------  608 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~---------  608 (638)
                      +++..|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..         
T Consensus        64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  143 (285)
T 1wdy_A           64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER  143 (285)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988         


Q ss_pred             -cCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          609 -NREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       609 -d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                       +..|.||||+|+..|+  .+++++|++.
T Consensus       144 ~~~~g~t~L~~A~~~~~--~~~v~~Ll~~  170 (285)
T 1wdy_A          144 LRKGGATALMDAAEKGH--VEVLKILLDE  170 (285)
T ss_dssp             TTCCCCCHHHHHHHHTC--HHHHHHHHHT
T ss_pred             hccCCCcHHHHHHHcCC--HHHHHHHHHh
Confidence             7889999999999998  8999999986

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.79  E-value=2.8e-19  Score=168.52  Aligned_cols=119  Identities=20%  Similarity=0.191  Sum_probs=106.5

Q ss_pred             cccccCCcccccccccCCCCC-CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          518 TGNSSDRSSSGSLNLAGTSEG-QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       518 ~~~~~~~~~~~~~lL~~~~~~-~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      +.+...+....+..|+..+.+ ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   86 (172)
T 3v30_A            7 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG   86 (172)
T ss_dssp             HHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHH
Confidence            333344455555556666655 8889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|+++|++++.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus        87 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga  126 (172)
T 3v30_A           87 LLLERDVDINIYDWNGGTPLLYAVRGNH--VKCVEALLARGA  126 (172)
T ss_dssp             HHHTTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            9999999999999999999999999998  999999999885

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.79  E-value=2.8e-19  Score=187.20  Aligned_cols=108  Identities=31%  Similarity=0.409  Sum_probs=100.2

Q ss_pred             CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCC
Q 006616          524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA  603 (638)
Q Consensus       524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~ga  603 (638)
                      ....++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       225 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  304 (351)
T 3utm_A          225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS  304 (351)
T ss_dssp             THHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            34567778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCC
Q 006616          604 DPRAVNREGKTSLELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       604 d~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~g  637 (638)
                      +++.+|..|.||+++|    +  .+++++|.+.+
T Consensus       305 d~~~~~~~g~tal~~a----~--~~~~~~l~~~~  332 (351)
T 3utm_A          305 DPSIISLQGFTAAQMG----N--EAVQQILSEST  332 (351)
T ss_dssp             CTTCCCTTSCCHHHHS----C--HHHHHHHHHC-
T ss_pred             CCCCcCCCCCChhhhh----h--HHHHHHHHhcc
Confidence            9999999999999998    2  67888888764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.79  E-value=1.3e-19  Score=168.75  Aligned_cols=119  Identities=21%  Similarity=0.193  Sum_probs=109.9

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      +..+...+....+..|+..|++++..|..|.||||+|+. |+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         9 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   87 (162)
T 1ihb_A            9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQ   87 (162)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            344445556667777888999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|+++|++++.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus        88 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~  127 (162)
T 1ihb_A           88 TLLEFQADVNIEDNEGNLPLHLAAKEGH--LRVVEFLVKHTA  127 (162)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSC
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHHccC
Confidence            9999999999999999999999999998  899999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.79  E-value=5e-19  Score=160.46  Aligned_cols=100  Identities=28%  Similarity=0.378  Sum_probs=94.0

Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCH
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS  615 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~Tp  615 (638)
                      |+|+ ..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4566 678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHhhCCC
Q 006616          616 LELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||+|+..|+  .+++++|+++|+
T Consensus        80 L~~A~~~~~--~~~v~~Ll~~ga  100 (137)
T 3c5r_A           80 LHDAAKNGH--VDIVKLLLSYGA  100 (137)
T ss_dssp             HHHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHHHHHcCC--HHHHHHHHHcCC
Confidence            999999998  899999999885

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.79  E-value=3.7e-19  Score=169.06  Aligned_cols=109  Identities=29%  Similarity=0.330  Sum_probs=102.1

Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      +..+|...+.+++..|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  100 (179)
T 3f6q_A           21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA  100 (179)
T ss_dssp             HHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            33344455788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|..|.||||+|+..|+  .+++++|+++|+
T Consensus       101 ~d~~g~t~L~~A~~~~~--~~~v~~Ll~~ga  129 (179)
T 3f6q_A          101 VNEHGNVPLHYACFWGQ--DQVAEDLVANGA  129 (179)
T ss_dssp             CCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence            99999999999999998  899999999986

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.79  E-value=2.1e-19  Score=166.18  Aligned_cols=114  Identities=29%  Similarity=0.324  Sum_probs=104.2

Q ss_pred             cCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 006616          522 SDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR  601 (638)
Q Consensus       522 ~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~  601 (638)
                      ..+....+..|+..|++++ .|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        11 ~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   89 (153)
T 1awc_B           11 RAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH   89 (153)
T ss_dssp             HHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHc
Confidence            3344556666777777776 578899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          602 GADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       602 gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |++++.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus        90 g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga  124 (153)
T 1awc_B           90 GADVNAKDMLKMTALHWATEHNH--QEVVELLIKYGA  124 (153)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            99999999999999999999998  899999999885

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.79  E-value=3.7e-19  Score=193.24  Aligned_cols=178  Identities=21%  Similarity=0.245  Sum_probs=150.5

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc---CCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..++.+ ++++|++.|+++|..+..+..+       .+..++++|+..+....   ....++++.+...+...
T Consensus       148 t~L~~A~~~g~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  226 (437)
T 1n11_A          148 TPLHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE  226 (437)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHH-HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            5678888877765 5577779999999987766333       34466777765543321   12344566666677778


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      ++..|+..|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus       227 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  306 (437)
T 1n11_A          227 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA  306 (437)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|..|.||||+|+..|+  .++|++|+++|+
T Consensus       307 ~~~~g~t~L~~A~~~g~--~~~v~~Ll~~ga  335 (437)
T 1n11_A          307 TTRMGYTPLHVASHYGN--IKLVKFLLQHQA  335 (437)
T ss_dssp             CCSSCCCHHHHHHHSSC--SHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHcCc--HHHHHHHHhcCC
Confidence            99999999999999998  789999999885

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.79  E-value=1.4e-19  Score=168.15  Aligned_cols=138  Identities=18%  Similarity=0.115  Sum_probs=106.1

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      ...|+.|+..++.+.| ++|++.|+|+|..+..+                     .++++++  . .+...++.+|+..|
T Consensus        13 ~t~L~~A~~~g~~~~v-~~Ll~~g~~~~~~~~~g---------------------~t~L~~A--~-~~~~~~v~~Ll~~g   67 (156)
T 1bi7_B           13 ADWLATAAARGRVEEV-RALLEAGANPNAPNSYG---------------------RRPIQVM--M-MGSARVAELLLLHG   67 (156)
T ss_dssp             TTHHHHHHHHTCHHHH-HHHHTTTCCTTCCCSSS---------------------CCTTTSS--C-TTCHHHHHHHHTTT
T ss_pred             hHHHHHHHHcCCHHHH-HHHHHcCCCCCCCCCCC---------------------CCHHHHH--H-cCCHHHHHHHHHcC
Confidence            4678899999887765 55568899999887655                     3444443  3 56677888899999


Q ss_pred             CCCCcCCCCCCc-HHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCH
Q 006616          537 EGQTMDDLEGCT-LLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS  615 (638)
Q Consensus       537 ~~~~~~d~~G~T-pLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~Tp  615 (638)
                      ++++..|..|.| |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        68 ~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             CCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            999999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 006616          616 LELA  619 (638)
Q Consensus       616 L~~A  619 (638)
                      .+-+
T Consensus       148 ~~~~  151 (156)
T 1bi7_B          148 AEGP  151 (156)
T ss_dssp             ----
T ss_pred             cccC
Confidence            8744

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.78  E-value=4.4e-19  Score=175.29  Aligned_cols=178  Identities=20%  Similarity=0.265  Sum_probs=148.7

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhcc-------chhhHHHHHhhhhcccc----CCCcccccccccCCcc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCI-------SSLTLAKAMLLNEQTSL----ERSSSSLTGNSSDRSS  526 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~-------~~~~l~~~ll~~~~~~~----~~~~~~l~~~~~~~~~  526 (638)
                      ..|+.|+..|+.+.+ +.|++.|+|+|..+..+...       .+..+++.++.......    ....++++.+...+..
T Consensus        11 ~~l~~A~~~g~~~~~-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~   89 (240)
T 3eu9_A           11 WDIVKATQYGIYERC-RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL   89 (240)
T ss_dssp             CCHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH
T ss_pred             hHHHHHHHcCChHHH-HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH
Confidence            568889999887766 55668999999987766333       34567777776543322    1133455555556667


Q ss_pred             cccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC-HHHHHHHHhCCCCC
Q 006616          527 SGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK-AMFAKLLLTRGADP  605 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~-~~~v~lLl~~gad~  605 (638)
                      .++.+|+..|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++ .+++++|++.|+++
T Consensus        90 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~  169 (240)
T 3eu9_A           90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV  169 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc
Confidence            77888899999999999999999999999999999999999999999999999999999997776 89999999999999


Q ss_pred             CCccC-CCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          606 RAVNR-EGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       606 ~~~d~-~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +..+. .|.||||+|+..|+  .+++++|+++|+
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~  201 (240)
T 3eu9_A          170 NLGDKYHKNTALHWAVLAGN--TTVISLLLEAGA  201 (240)
T ss_dssp             TCCCTTTCCCHHHHHHHHTC--HHHHHHHHHHTC
T ss_pred             chhhccCCCcHHHHHHHcCC--HHHHHHHHHcCC
Confidence            99997 99999999999998  899999999875

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.78  E-value=1e-18  Score=157.38  Aligned_cols=95  Identities=22%  Similarity=0.381  Sum_probs=74.4

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++|+|||+|++  ..++|+||||||+ ++.|+||+++.+                                       
T Consensus         6 ~~v~k~GwL~K~g--~~k~WkrRWfVLk-~~~L~yyk~~~~---------------------------------------   43 (130)
T 1v88_A            6 SGIVMADWLKIRG--TLKSWTKLWCVLK-PGVLLIYKTQKN---------------------------------------   43 (130)
T ss_dssp             SSCCEEEEEEECC--SSSSCEEEEEEEE-TTEEEEESCSSS---------------------------------------
T ss_pred             CceEEEeEEEEeC--CCCCceEEEEEEE-CCEEEEECCCCC---------------------------------------
Confidence            4568999999985  5679999999998 678888877532                                       


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCC------------------------eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT------------------------KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~------------------------rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      ..+.+.|.|..|+|...+ +..++|||+|.+|.                        ++|+|+|+|++|+++||.||+.+
T Consensus        44 ~~p~G~I~L~~~~v~~~~-~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a  122 (130)
T 1v88_A           44 GQWVGTVLLNACEIIERP-SKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELA  122 (130)
T ss_dssp             CCCCEEEECSSCEECCCC-TTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCEEEECC-CCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHH
Confidence            223456888888876432 33456999999864                        34899999999999999999998


Q ss_pred             HH
Q 006616          233 IA  234 (638)
Q Consensus       233 i~  234 (638)
                      |.
T Consensus       123 ~~  124 (130)
T 1v88_A          123 LK  124 (130)
T ss_dssp             HT
T ss_pred             Hh
Confidence            74

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=6.3e-19  Score=156.82  Aligned_cols=103  Identities=24%  Similarity=0.462  Sum_probs=82.0

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEec-CceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~-~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      ...++++|||+|+++ ..+.|+||||||+. ++.|+||+.+...                                    
T Consensus         5 ~~~~~~~G~L~K~~~-~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~------------------------------------   47 (120)
T 2d9x_A            5 SSGENVYGYLMKYTN-LVTGWQYRFFVLNNEAGLLEYFVNEQSR------------------------------------   47 (120)
T ss_dssp             CSCCCCEEEEEEEEE-TTTEEEEEEEEECTTTCEEEEESSGGGS------------------------------------
T ss_pred             CCCCcEEEEEEecCC-CCCCceEEEEEEECCCCEEEEEecCccc------------------------------------
Confidence            345679999999964 56789999999986 6899999875331                                    


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                       ...+.+.|+|..+.|.+..   ++++||+|++++ ++|+|+|+|++|+++||.+|+.+|......
T Consensus        48 -~~~~~g~I~L~~~~v~~~~---~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  109 (120)
T 2d9x_A           48 -NQKPRGTLQLAGAVISPSD---EDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEA  109 (120)
T ss_dssp             -SSCCSEEEECTTCCEECCS---SSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCccceEEcceEEEEecC---CCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHhhhh
Confidence             1124456888888877532   457999999997 999999999999999999999999766544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.78  E-value=8.1e-19  Score=164.12  Aligned_cols=111  Identities=27%  Similarity=0.268  Sum_probs=102.0

Q ss_pred             ccccccc-cCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q 006616          526 SSGSLNL-AGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD  604 (638)
Q Consensus       526 ~~~~~lL-~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad  604 (638)
                      ...+..| ...+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        21 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  100 (165)
T 3twr_A           21 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV  100 (165)
T ss_dssp             HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Confidence            3334334 446778888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          605 PRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       605 ~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ++.+|..|.||||+|+..|+  .+++++|+++|+
T Consensus       101 ~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga  132 (165)
T 3twr_A          101 VNVADLWKFTPLHEAAAKGK--YEICKLLLQHGA  132 (165)
T ss_dssp             TTCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             CCCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            99999999999999999998  899999999885

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.78  E-value=1.6e-19  Score=177.63  Aligned_cols=150  Identities=21%  Similarity=0.261  Sum_probs=121.1

Q ss_pred             cceecccccccchhhhhhhcccc--cCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFE--VDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT  535 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~g--aDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~  535 (638)
                      ..|+.|+..++.+ ++++|++.|  +++|..+..+                       .++++.+...+...++.+|+..
T Consensus        74 t~L~~A~~~~~~~-~~~~Ll~~g~~~~~~~~~~~g-----------------------~t~L~~A~~~~~~~~~~~Ll~~  129 (228)
T 2dzn_A           74 TPFHIACSVGNLE-VVKSLYDRPLKPDLNKITNQG-----------------------VTCLHLAVGKKWFEVSQFLIEN  129 (228)
T ss_dssp             CHHHHHHHHCCHH-HHHHHHSSSSCCCTTCCCTTC-----------------------CCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHcCCHH-HHHHHHhCCCCcccccCCcCC-----------------------CCHHHHHHHcCCHhHHHHHHHc
Confidence            3455555555443 334455655  5555554433                       2334444455666778888899


Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHH-hCCCCCCCccCCCC
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLL-TRGADPRAVNREGK  613 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~lLl-~~gad~~~~d~~g~  613 (638)
                      |++++..|..|.||||+|+..|+.+++++|+++| +++|.+|..|+||||+|+..|+.+++++|+ ++|++++.+|..|.
T Consensus       130 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~  209 (228)
T 2dzn_A          130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA  209 (228)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            9999999999999999999999999999999999 999999999999999999999999999999 88999999999999


Q ss_pred             CHHHHHHHcCCCcHHHHHHHhhC
Q 006616          614 TSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       614 TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      |||++|+..     +++++|+++
T Consensus       210 t~l~~A~~~-----~~~~~l~~~  227 (228)
T 2dzn_A          210 KAEDVALNE-----QVKKFFLNN  227 (228)
T ss_dssp             BGGGGCSST-----THHHHHHTT
T ss_pred             cHHHHHHHH-----HHHHHHHhc
Confidence            999999654     478888764

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=2.5e-18  Score=152.76  Aligned_cols=102  Identities=24%  Similarity=0.379  Sum_probs=81.1

Q ss_pred             cceeEEEEEEeecC-CCCCCceeeEEEEecCc-eEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           97 VQTIRQGYLSKRSS-NLRGDWKRRFFVLDSRG-MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~-~~~~~WkrRwfvL~~~~-~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      ..++++|||+|+++ ...+.|+||||||.+++ .|+||++..+                                     
T Consensus         6 ~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~-------------------------------------   48 (119)
T 2dhk_A            6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQD-------------------------------------   48 (119)
T ss_dssp             SCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTC-------------------------------------
T ss_pred             CCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCC-------------------------------------
Confidence            45678999999975 25789999999999654 8888877543                                     


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                        ..+.+.|+|..+++...  ...+++||.|.++.|+|+|+|+|++|+++||.+|+.++....+.
T Consensus        49 --~~~~g~I~L~~~~~~~~--~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  109 (119)
T 2dhk_A           49 --ANPLDSIDLSSAVFDCK--ADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS  109 (119)
T ss_dssp             --CSCSEEEEGGGCEEEEC--TTGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             --cccccEEECCCCEEEec--CCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence              12345578877776543  22457999999999999999999999999999999999877655

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.77  E-value=1.8e-18  Score=159.09  Aligned_cols=96  Identities=16%  Similarity=0.244  Sum_probs=71.9

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++|+|||+|+++ ..++|+||||||++ ..||||+++.+.                                       
T Consensus        17 pv~keG~L~Kkg~-~~k~WkrRWFvLk~-~~L~Yyk~~~d~---------------------------------------   55 (149)
T 1x1f_A           17 PLYFEGFLLIKRS-GYREYEHYWTELRG-TTLFFYTDKKSI---------------------------------------   55 (149)
T ss_dssp             CEEEEEEEEEECT-TCCSCEEEEEEEET-TEEEEESCSSCS---------------------------------------
T ss_pred             CccEEEEEEEeCC-CCCCceeEEEEEcC-CEEEEEeCCCcc---------------------------------------
Confidence            3789999999965 46899999999985 567777665331                                       


Q ss_pred             cccceeecccceeecC-CCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVD-ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~-~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      .+.+.|+|..+++... .....+++||.|++++++|+|+|+|++|+++||.+|+.++.
T Consensus        56 ~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~  113 (149)
T 1x1f_A           56 IYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTE  113 (149)
T ss_dssp             SCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccCcEEECCCceEEeeccCCCCcCcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            1223466665554421 11123579999999999999999999999999999998765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.77  E-value=1.6e-19  Score=184.48  Aligned_cols=154  Identities=18%  Similarity=0.160  Sum_probs=129.8

Q ss_pred             ceecccccccchhhhhhhcccccC--ccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          459 QIWEGVRTNDKKAVYRHIVNFEVD--VNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       459 ~L~~Av~~~d~~~v~~lLl~~gaD--vN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      .++.|+..++...+..++ ..+++  +|..+..+                       .++++.+...+...++.+|+..|
T Consensus        79 ~l~~a~~~~~~~~~~~l~-~~~~~~~~n~~d~~g-----------------------~T~Lh~A~~~g~~~~v~~Ll~~g  134 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMS-ARLLDYVVNIADSNG-----------------------NTALHYSVSHANFPVVQQLLDSG  134 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHC-HHHHHHHHTCCCTTS-----------------------CCHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHHHH-HHHHhhcCcCCCCCC-----------------------CCHHHHHHHCCCHHHHHHHHHCC
Confidence            356677777776665444 55555  77776655                       23344444556667788888888


Q ss_pred             C-CCCcCCCCCCcHHHHHH-----HhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccC
Q 006616          537 E-GQTMDDLEGCTLLHLAC-----DSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR  610 (638)
Q Consensus       537 ~-~~~~~d~~G~TpLh~Aa-----~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~  610 (638)
                      + +++..|..|.||||+|+     ..++.+++++|++.|++++..|..|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus       135 ~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~  214 (276)
T 4hbd_A          135 VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD  214 (276)
T ss_dssp             CCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Confidence            7 99999999999999999     66889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCCcHHHHHHHhh-CCC
Q 006616          611 EGKTSLELAVESNFADSEVLAILSD-SHG  638 (638)
Q Consensus       611 ~g~TpL~~A~~~g~~d~eiv~lLle-~ga  638 (638)
                      +|.||||+|+..|+  .++|++|++ .|+
T Consensus       215 ~G~TpLh~A~~~g~--~~iv~~Ll~~~ga  241 (276)
T 4hbd_A          215 DGSTALMCACEHGH--KEIAGLLLAVPSC  241 (276)
T ss_dssp             TSCCHHHHHHHHTC--HHHHHHHHTSTTC
T ss_pred             CCCCHHHHHHHCCC--HHHHHHHHhcCCC
Confidence            99999999999998  899999999 664

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.77  E-value=1.7e-19  Score=188.88  Aligned_cols=162  Identities=13%  Similarity=0.013  Sum_probs=127.2

Q ss_pred             hhhhhcccccCccccccch--hccchhhHHHHHhhhhccccCCCcccc---------------------cccccCCcccc
Q 006616          472 VYRHIVNFEVDVNAVYEQV--SCISSLTLAKAMLLNEQTSLERSSSSL---------------------TGNSSDRSSSG  528 (638)
Q Consensus       472 v~~lLl~~gaDvN~~~~~~--~~~~~~~l~~~ll~~~~~~~~~~~~~l---------------------~~~~~~~~~~~  528 (638)
                      ++++|++.|+|+|..+..+  ...++..+++.|+..+..... ....+                     +.+.......+
T Consensus        34 lv~~ll~~ga~i~~~~~~g~~~~~g~~~~v~~Ll~~g~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  112 (327)
T 1sw6_A           34 LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEI-QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV  112 (327)
T ss_dssp             CCCSTTTSSCCCEECBCCCCCCCHHHHHHHHHHHHHHHC--------------------------------CHHHHHHHH
T ss_pred             hHHHHhhCCcccccCCCCCCcccCchhHHHHHHHHhccCCcc-ccchHhhhcccccccccccCCccchhHHHHHhhHHHH
Confidence            4677788899988876655  333556777777655433221 11111                     12222233356


Q ss_pred             cccccCCCCCCCc-CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC---HHHHHHHHhCC-C
Q 006616          529 SLNLAGTSEGQTM-DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGK---AMFAKLLLTRG-A  603 (638)
Q Consensus       529 ~~lL~~~~~~~~~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~---~~~v~lLl~~g-a  603 (638)
                      ..+|+..|+++|. .|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+   .++++.|++++ +
T Consensus       113 ~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~  192 (327)
T 1sw6_A          113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP  192 (327)
T ss_dssp             HHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred             HHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc
Confidence            6778899999999 89999999999999999999999999999999999999999999999998   78888888886 8


Q ss_pred             CCCCccCCCCCHHHHHHH----cCCCcHHHHHHHhhC
Q 006616          604 DPRAVNREGKTSLELAVE----SNFADSEVLAILSDS  636 (638)
Q Consensus       604 d~~~~d~~g~TpL~~A~~----~g~~d~eiv~lLle~  636 (638)
                      +++.+|..|.||||+|+.    .|+  .+++++|++.
T Consensus       193 ~~~~~d~~g~tpLh~A~~~~~~~g~--~~~v~~Ll~~  227 (327)
T 1sw6_A          193 CLILEDSMNRTILHHIIITSGMTGC--SAAAKYYLDI  227 (327)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTC--HHHHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHcccccc--HHHHHHHHHH
Confidence            899999999999999999    777  8999999876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.77  E-value=2.1e-19  Score=159.87  Aligned_cols=113  Identities=28%  Similarity=0.390  Sum_probs=100.2

Q ss_pred             cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHH
Q 006616          516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFA  595 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v  595 (638)
                      .++.+...+....+..|+..+++++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++
T Consensus        10 ~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v   89 (123)
T 3aaa_C           10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV   89 (123)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHH
Confidence            34445555666677778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616          596 KLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAIL  633 (638)
Q Consensus       596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lL  633 (638)
                      ++|+++|++++.+|.+|.||||+|..     .++.++|
T Consensus        90 ~~Ll~~ga~~~~~~~~g~t~l~~A~~-----~~~~~ll  122 (123)
T 3aaa_C           90 KLLLSKGADKTVKGPDGLTAFEATDN-----QAIKALL  122 (123)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHCCC-----HHHHHHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHhCC-----HHHHHHh
Confidence            99999999999999999999999932     4455554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.77  E-value=6.1e-19  Score=159.86  Aligned_cols=100  Identities=26%  Similarity=0.343  Sum_probs=96.6

Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCC-CCC
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNRE-GKT  614 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~-g~T  614 (638)
                      +++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            56889999999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          615 SLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       615 pL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |||+|+..|+  .+++++|+++|+
T Consensus        81 ~L~~A~~~~~--~~~v~~Ll~~ga  102 (136)
T 1d9s_A           81 PVHDAAREGF--LDTLVVLHRAGA  102 (136)
T ss_dssp             HHHHHHHHTC--HHHHHHHHHTCC
T ss_pred             HHHHHHHcCC--HHHHHHHHHcCC
Confidence            9999999998  899999999885

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.77  E-value=5.5e-18  Score=148.85  Aligned_cols=99  Identities=25%  Similarity=0.447  Sum_probs=77.1

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++++|||+|+++ ..+.|+||||||. ++.|+||++...                                       .
T Consensus         4 ~~~~~G~L~K~g~-~~~~Wk~R~fvL~-~~~L~yy~~~~~---------------------------------------~   42 (113)
T 1pls_A            4 KRIREGYLVKKGS-VFNTWKPMWVVLL-EDGIEFYKKKSD---------------------------------------N   42 (113)
T ss_dssp             CCSEEEEEEEESS-SSSCCEEEEEEEE-TTEEEEESSTTC---------------------------------------S
T ss_pred             CCcEEEEEEEeCC-CCCCceEEEEEEE-CCEEEEEeCCCC---------------------------------------C
Confidence            4679999999954 5678999999999 567788876532                                       1


Q ss_pred             cccceeecccceeec-CCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          178 AARHTVNLLTSTIKV-DADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~-~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      .+.+.|+|..+++.. ..+...++|||+|++++ ++|+|+|+|++|+++||.+|+.+|....
T Consensus        43 ~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~  104 (113)
T 1pls_A           43 SPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIE  104 (113)
T ss_dssp             SCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhccc
Confidence            233457777766643 23445678999999987 8999999999999999999999997644

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.76  E-value=1.7e-18  Score=155.11  Aligned_cols=99  Identities=26%  Similarity=0.518  Sum_probs=72.0

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEec--CceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDS--RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~--~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++|||.|+++...+.|+||||||+.  +.+||||+++.+.+.+                                   .
T Consensus        16 ~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~-----------------------------------~   60 (126)
T 1v5p_A           16 RICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVG-----------------------------------A   60 (126)
T ss_dssp             CEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTT-----------------------------------C
T ss_pred             ceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCC-----------------------------------c
Confidence            47999999975567899999999984  5578887764221111                                   1


Q ss_pred             cccceeeccc-ceeecCC--CCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLT-STIKVDA--DQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       178 ~~~~~i~l~~-~~v~~~~--~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      .+.+.|.|.. +.|....  ...+++|||.|.++.|+|+|+|+|++|+++||++|+.++
T Consensus        61 ~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~  119 (126)
T 1v5p_A           61 GAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS  119 (126)
T ss_dssp             CCSEEEETTTCCEEEECCTTTSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             eeeEEEECCCccEEecCCcccCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence            2334455554 3444321  233568999999999999999999999999999999775

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.76  E-value=8.7e-19  Score=174.90  Aligned_cols=119  Identities=17%  Similarity=0.204  Sum_probs=89.3

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      ++.+........+..|+..|++++.. ..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++++
T Consensus         9 L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~   87 (239)
T 1ycs_B            9 LPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVK   87 (239)
T ss_dssp             -----------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            34444455566777888999999875 67999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|+++|++++.+|..|.||||+|+..|+  .++|++|+++|+
T Consensus        88 ~Ll~~ga~~~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ga  127 (239)
T 1ycs_B           88 FLVQFGVNVNAADSDGWTPLHCAASCNN--VQVCKFLVESGA  127 (239)
T ss_dssp             HHHHHTCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHHHcCCCCCccCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            9999999999999999999999999998  899999999986

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.76  E-value=4.6e-18  Score=148.41  Aligned_cols=95  Identities=23%  Similarity=0.411  Sum_probs=75.2

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++++|||+|++ ...+.|+||||||+ ++.|+||+.+..                                       .
T Consensus         7 ~~~~~G~L~K~~-~~~~~Wk~RwfvL~-~~~L~yyk~~~~---------------------------------------~   45 (109)
T 1wgq_A            7 GSTMSGYLYRSK-GSKKPWKHLWFVIK-NKVLYTYAASED---------------------------------------V   45 (109)
T ss_dssp             SCSCEEEEEEES-STTSCCEEEEEEEE-TTEEEEESCTTC---------------------------------------S
T ss_pred             CCeEEEEEEeCC-CCCCCceeEEEEEe-CCEEEEECCCCc---------------------------------------C
Confidence            456899999995 44679999999998 688888876532                                       1


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      .+.+.|+|..+++....+...++|||+|++++ ++|+|+|+|++|+++||.+|+.++
T Consensus        46 ~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~  102 (109)
T 1wgq_A           46 AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT  102 (109)
T ss_dssp             SCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccCceEECCCCEEEECCCCCCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence            23345778777776544444567999999886 689999999999999999999886

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=5e-18  Score=153.26  Aligned_cols=107  Identities=18%  Similarity=0.291  Sum_probs=72.1

Q ss_pred             CCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCC-CCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~-~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      +...++|+|||+|++ +..+.|+||||||..++.|+||+++... +.|.+.+                            
T Consensus         4 ~~~~v~~~G~L~K~g-~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l----------------------------   54 (130)
T 2d9v_A            4 GSSGLVRGGWLWRQS-SILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVI----------------------------   54 (130)
T ss_dssp             SCCCEEEEEEEEEEC-SSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEEC----------------------------
T ss_pred             CCCceeEEEEEEeec-CccCCceeeEEEEccCCEEEEEeCCCCCCcCceEec----------------------------
Confidence            345678999999995 4578999999999558899999876431 1111000                            


Q ss_pred             Cccccccceeecc-cc-eeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLL-TS-TIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       174 ~~~~~~~~~i~l~-~~-~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                         ......+.+. .| .+.. ++...++|||+|++++ |+|+|+|+|++|+++||+||+.++.
T Consensus        55 ---~~~~~~i~~~~~~~~v~~-~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           55 ---HFNVRDIKVGQECQDVQP-PEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             ---TTTEEEEEEGGGCSSCCC-CSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ---ccceeEEeccccccccCC-CCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence               0000001110 11 1221 2344678999999965 9999999999999999999998874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=1.1e-18  Score=153.25  Aligned_cols=96  Identities=33%  Similarity=0.473  Sum_probs=92.7

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHH
Q 006616          541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV  620 (638)
Q Consensus       541 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~  620 (638)
                      .+|.+|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCcHHHHHHHhhCCC
Q 006616          621 ESNFADSEVLAILSDSHG  638 (638)
Q Consensus       621 ~~g~~d~eiv~lLle~ga  638 (638)
                      ..++  .+++++|+++||
T Consensus        84 ~~~~--~~~~~~Ll~~ga   99 (115)
T 2l6b_A           84 KNGH--HEIVKLLDAKGA   99 (115)
T ss_dssp             TTTC--HHHHHHHHTTSS
T ss_pred             HCCC--HHHHHHHHHcCC
Confidence            9998  899999999986

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=6.3e-18  Score=148.81  Aligned_cols=102  Identities=22%  Similarity=0.428  Sum_probs=78.3

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++++|||+|+++ ..+.|++|||||. ++.|+||+.+..                                       
T Consensus         6 ~~~~~~G~L~K~~~-~~~~Wk~R~fvL~-~~~L~yy~~~~~---------------------------------------   44 (115)
T 2dn6_A            6 SGVLKQGYMMKKGH-RRKNWTERWFVLK-PNIISYYVSEDL---------------------------------------   44 (115)
T ss_dssp             CSCSEEEEEEEECT-TSSCEEEEEEEEC-SSCEEEESSTTC---------------------------------------
T ss_pred             CCceEEEEEEecCC-CCCCcEEeEEEEE-CCEEEEeCCCCC---------------------------------------
Confidence            45679999999954 5778999999998 567777776432                                       


Q ss_pred             ccccceeeccc-ceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          177 SAARHTVNLLT-STIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       177 ~~~~~~i~l~~-~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      ..+.+.|.|.. +.|...++...+++||.|.+++++|+|+|+|++|+++||.+|+.+|...-..
T Consensus        45 ~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~~  108 (115)
T 2dn6_A           45 KDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLG  108 (115)
T ss_dssp             SSEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccCcEEEecCcEEEEECCCCCCCeeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhcC
Confidence            12334566654 3455434444678999999999999999999999999999999999865544

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.76  E-value=5.3e-18  Score=152.76  Aligned_cols=111  Identities=22%  Similarity=0.361  Sum_probs=79.4

Q ss_pred             cceeEEEEEEee----cC-CCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616           97 VQTIRQGYLSKR----SS-NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG  171 (638)
Q Consensus        97 ~~~~k~GyL~Kr----~~-~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  171 (638)
                      ..++|+|||.|+    ++ ..+++|++|||||. ++.|+||+.+.....+..                            
T Consensus        10 ~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~-~~~L~yykd~~~~~~~~~----------------------------   60 (129)
T 2p0d_A           10 HEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLT-GNSLVFYREPPPTAPSSG----------------------------   60 (129)
T ss_dssp             CSEEEEEEEEEEEEEETTEECCCCCEEEEEEEE-SSEEEEESCC------------------------------------
T ss_pred             cceeEEEEEEEeeeccCCCcCCCCceEEEEEEe-CCEEEEEcCccccccccc----------------------------
Confidence            457899999985    23 24589999999999 566777776532111100                            


Q ss_pred             CCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       172 ~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                      ..+....+.+.|+|..|++....+...++|||+|.+++ ++|+|||+|++||++||.+|+.+|...
T Consensus        61 ~~~~~~~p~g~I~L~~~~v~~~~~~~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~  126 (129)
T 2p0d_A           61 WGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERL  126 (129)
T ss_dssp             ------CCSEEEECTTCEEEECTTSCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCccEEEeCCcEEEECCCCCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            00012345567899999887655556778999999986 689999999999999999999999764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.76  E-value=2.5e-19  Score=176.38  Aligned_cols=125  Identities=22%  Similarity=0.249  Sum_probs=106.4

Q ss_pred             cCCCcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHH
Q 006616          510 LERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCIL  588 (638)
Q Consensus       510 ~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~  588 (638)
                      .+.++++++  ...+....+..|+..|++++..|..|+||||+||..|+.++|++|+++ |+++|.+|..|+||||+|+.
T Consensus        72 ~g~t~L~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEA--AKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHH--HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccc--cccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            334444444  444556677788889999999999999999999999999999999999 99999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          589 RGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       589 ~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .|+.+++++|+++|++++.+|..|.|||++|+..++  .++++.|++.|+
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~--~~~l~~l~~~~~  197 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC--ASLLKKKQGTDA  197 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHH--HHHHC-------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhH--HHHHHHHhccch
Confidence            999999999999999999999999999999999987  899999998774

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.76  E-value=2.6e-18  Score=153.45  Aligned_cols=105  Identities=23%  Similarity=0.394  Sum_probs=78.3

Q ss_pred             cceeEEEEEEeecCC-------CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccC
Q 006616           97 VQTIRQGYLSKRSSN-------LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH  169 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~-------~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~  169 (638)
                      ..++|+|||+|+...       ..+.|++|||||+ ++.|+||+.+.....+.                           
T Consensus         6 ~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~-~~~L~yyk~~~~~~~~~---------------------------   57 (123)
T 1wjm_A            6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLR-RGSLGFYKDAKAASAGV---------------------------   57 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEE-TTEEEEESSHHHHTTTC---------------------------
T ss_pred             CCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEE-CCEEEEEEcccccccCc---------------------------
Confidence            446799999998532       2679999999998 56778887653311110                           


Q ss_pred             CCCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          170 GGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       170 ~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                            .......|+|..|.+.+..+...++|||+|++++ ++|+|||+|++||++||.+|+.+|..
T Consensus        58 ------~~~~~~~i~l~~~~~~~~~~~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~  118 (123)
T 1wjm_A           58 ------PYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             ------BSSSCCCEECTTCEEEECTTCSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ------ccCCCceEEccCcEEeecccccCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                  0112234777777777655556789999999887 89999999999999999999999874

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.76  E-value=1.4e-18  Score=165.92  Aligned_cols=119  Identities=24%  Similarity=0.229  Sum_probs=103.1

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHhCCHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFA  595 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v  595 (638)
                      ++.+...+....+..|+. +++++..|..|+||||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..|+.+++
T Consensus        48 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v  126 (183)
T 3deo_A           48 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV  126 (183)
T ss_dssp             HHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHH
Confidence            344444555566666777 99999999999999999999999999999999999999998 8899999999999999999


Q ss_pred             HHHHhCCCCCCCccCCCCCHHHHHHHcCCC--------------cHHHHHHHhhC
Q 006616          596 KLLLTRGADPRAVNREGKTSLELAVESNFA--------------DSEVLAILSDS  636 (638)
Q Consensus       596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~~--------------d~eiv~lLle~  636 (638)
                      ++|+++|++++.+|.+|.||||+|+..++.              ..+++++|.++
T Consensus       127 ~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          127 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999999999999999876321              15788887765

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.75  E-value=5.1e-18  Score=152.14  Aligned_cols=98  Identities=23%  Similarity=0.519  Sum_probs=78.2

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++++|||+|++ +..+.|++|||||. ++.|+||+++..                                      
T Consensus        15 ~~~~~~~G~L~K~g-~~~~~Wk~R~fvL~-~~~L~yy~~~~~--------------------------------------   54 (126)
T 1fao_A           15 PSLGTKEGYLTKQG-GLVKTWKTRWFTLH-RNELKYFKDQMS--------------------------------------   54 (126)
T ss_dssp             CCTTCEEEEEEEEC-SSSCCEEEEEEEEE-TTEEEEESSTTC--------------------------------------
T ss_pred             CCCccEEEEEEEcC-CCCCCcccEEEEEE-CCEEEEeCCCCC--------------------------------------
Confidence            34567999999995 45778999999998 567888876532                                      


Q ss_pred             cccccceeecccce-eecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTST-IKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       176 ~~~~~~~i~l~~~~-v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                       ..+.+.|+|..|. +.+ .+..+++|||.|++++++|+|+|+|++|+++||.+|+.+|..
T Consensus        55 -~~~~g~i~L~~~~~v~~-~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  113 (126)
T 1fao_A           55 -PEPIRILDLTECSAVQF-DYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ  113 (126)
T ss_dssp             -SSCSEEEEGGGCCEEEE-ECSSSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             -CCceeEEEccceEEEEe-cccCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence             1234457787777 443 334567899999999999999999999999999999999976

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.75  E-value=4.5e-18  Score=148.61  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=74.8

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecC--ceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSR--GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~--~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ++.|||+|+. + .+.|+||||||.++  ..||||+.+.+                                       .
T Consensus         9 ~~~G~L~k~~-~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d---------------------------------------~   47 (112)
T 2coc_A            9 LLCGPLRLSE-S-GETWSEVWAAIPMSDPQVLHLQGGSQD---------------------------------------G   47 (112)
T ss_dssp             SSEEEEEEES-S-SSCEEEEEEECCTTCTTCEEEECCTTC---------------------------------------S
T ss_pred             eEEEEEEecC-C-CCCceEEEEEEECCCccEEEEECCCCc---------------------------------------c
Confidence            4679999974 3 67899999999865  48998877543                                       1


Q ss_pred             cccceeecccceeec--CCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKV--DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~--~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      .+.+.|.|..|+|..  ..+..+++|||+|+.+.++|+|+|+|++++++||++|+.|+
T Consensus        48 ~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~~~y~f~A~s~e~~~~Wl~al~~A~  105 (112)
T 2coc_A           48 RLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAA  105 (112)
T ss_dssp             SSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CcceEEEcCCCEEEecCcccccCCCCEEEEecCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            233568888898884  23445678999999999999999999999999999999875

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.75  E-value=3e-18  Score=169.29  Aligned_cols=142  Identities=23%  Similarity=0.269  Sum_probs=116.7

Q ss_pred             hhhHHHHHhhhhccc----cCCCcccccccccCCcccccccccCCCCCC-----CcCCCCCCcHHHHHHHhCCHHHHHHH
Q 006616          495 SLTLAKAMLLNEQTS----LERSSSSLTGNSSDRSSSGSLNLAGTSEGQ-----TMDDLEGCTLLHLACDSADIGMLELL  565 (638)
Q Consensus       495 ~~~l~~~ll~~~~~~----~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~-----~~~d~~G~TpLh~Aa~~g~~~~v~~L  565 (638)
                      +..+++.++......    .....++++.+...+...++.+|+..++++     +..|..|.||||+|+..|+.+++++|
T Consensus        15 ~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   94 (232)
T 2rfa_A           15 DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL   94 (232)
T ss_dssp             CHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHH
Confidence            445666666541111    112234455555566777788888888876     67788999999999999999999999


Q ss_pred             HHcCCCCcccCC-------------CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHH--
Q 006616          566 LQYGANINATDS-------------RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVL--  630 (638)
Q Consensus       566 l~~gadvn~~d~-------------~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv--  630 (638)
                      +++|++++..+.             .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+  .+++  
T Consensus        95 l~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~--~~~~~~  172 (232)
T 2rfa_A           95 LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN--KTFACQ  172 (232)
T ss_dssp             HHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSC--HHHHHH
T ss_pred             HhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC--hHHHHH
Confidence            999999998865             79999999999999999999999999999999999999999999998  6666  


Q ss_pred             --HHHhhCCC
Q 006616          631 --AILSDSHG  638 (638)
Q Consensus       631 --~lLle~ga  638 (638)
                        ++|+++|+
T Consensus       173 i~~~Ll~~g~  182 (232)
T 2rfa_A          173 MYNLLLSYDG  182 (232)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHhcCC
Confidence              99999875

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.75  E-value=9.9e-18  Score=149.45  Aligned_cols=98  Identities=28%  Similarity=0.481  Sum_probs=78.0

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++++|||+|+++...+.|++|||||. ++.|+||+....                                       
T Consensus         9 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~-~~~L~yy~~~~~---------------------------------------   48 (123)
T 1upq_A            9 LPVHIRGWLHKQDSSGLRLWKRRWFVLS-GHCLFYYKDSRE---------------------------------------   48 (123)
T ss_dssp             SCEEEEEEEEEECSSSSCCEEEEEEEEE-TTEEEEESSTTC---------------------------------------
T ss_pred             CCceEEEEEEeeCCCCCCCceeEEEEEe-CCEEEEECCCCC---------------------------------------
Confidence            3468999999997556789999999998 778888876532                                       


Q ss_pred             ccccceeecccceeecCCC--CCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDAD--QSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~--~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ..+.+.|.|..+.|.....  ..+++|||.|.+++ ++|+|+|+|++|+++||.+|+.++.
T Consensus        49 ~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  109 (123)
T 1upq_A           49 ESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR  109 (123)
T ss_dssp             CSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence            1233457777777765432  23578999999987 9999999999999999999999885

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.75  E-value=9.8e-18  Score=146.05  Aligned_cols=97  Identities=27%  Similarity=0.422  Sum_probs=74.2

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecC-ceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~-~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ..++++|||+|+++ ..+.|++|||||.++ +.|+||++...                                      
T Consensus         5 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yyk~~~~--------------------------------------   45 (109)
T 2i5f_A            5 GVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYDPAGA--------------------------------------   45 (109)
T ss_dssp             CCEEEEEEEEEECT-TTCCEEEEEEEEETTTTEEEEECTTSC--------------------------------------
T ss_pred             CceeEEEEEEEcCC-CCCCceEEEEEEeCCCcEEEEECCCCC--------------------------------------
Confidence            46789999999954 567899999999975 48888876522                                      


Q ss_pred             cccccceeecccceeecCCCC-----CCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVDADQ-----SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~~~~-----~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                       ..+.+.|+|..|+|....+.     .+++|||.|.+++ ++|+|+|+|++|+++||.+|+.+|
T Consensus        46 -~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           46 -EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             -SSCSEEEECTTCEEEEECC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             -CCccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence             12344577777766532221     1368999999997 679999999999999999999886

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.75  E-value=6.1e-19  Score=181.12  Aligned_cols=172  Identities=20%  Similarity=0.227  Sum_probs=126.4

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccch-------hhHHHHHhhhhcc-----ccCCCcccccccccCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISS-------LTLAKAMLLNEQT-----SLERSSSSLTGNSSDR  524 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~-------~~l~~~ll~~~~~-----~~~~~~~~l~~~~~~~  524 (638)
                      ...|+.|+..|+.+ ++++|++.|+|+|..+..+.++.+       ..++++|+..+..     ..+.+++++++.  ..
T Consensus        74 ~t~L~~A~~~g~~~-~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~--~~  150 (299)
T 1s70_B           74 LTALHQACIDDNVD-MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE--EA  150 (299)
T ss_dssp             CBHHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCS--HH
T ss_pred             CCHHHHHHHcCCHH-HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHh--cc
Confidence            35678888887765 567777999999998877744433       4666666654322     223344443332  22


Q ss_pred             ccccc-ccccCC--------------------------CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC
Q 006616          525 SSSGS-LNLAGT--------------------------SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS  577 (638)
Q Consensus       525 ~~~~~-~lL~~~--------------------------~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~  577 (638)
                      ....+ .++...                          .......+..|.||||+|+..|+.+++++|+++|+++|.+|.
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~  230 (299)
T 1s70_B          151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (299)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence            22111 112222                          223334567899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHh
Q 006616          578 RGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILS  634 (638)
Q Consensus       578 ~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLl  634 (638)
                      .|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+...   .++++.|+
T Consensus       231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~---~~~l~~l~  284 (299)
T 1s70_B          231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI---LGYLEELQ  284 (299)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG---GHHHHHHH
T ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH---HHHHHHHH
Confidence            9999999999999999999999999999999999999999997654   34454444

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.75  E-value=6.3e-18  Score=146.78  Aligned_cols=99  Identities=28%  Similarity=0.664  Sum_probs=77.5

Q ss_pred             ceeEEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           98 QTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      .++++|||+|+++.   ..+.|++|||||. ++.|+||+++..                                     
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~-------------------------------------   43 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVS-RGLFYYYANEKS-------------------------------------   43 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEE-TTEEEEESSTTC-------------------------------------
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEe-CCEEEEecCCCC-------------------------------------
Confidence            36899999999753   2378999999998 677888876532                                     


Q ss_pred             ccccccceeecccceeecCC---CCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDA---DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~---~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                        ..+.+.|+|..+++...+   .+..++|||.|++++ ++|+|+|+|++|+++||.+|+.+|..+
T Consensus        44 --~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~l  107 (108)
T 1u5d_A           44 --KQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL  107 (108)
T ss_dssp             --SSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCEEEEecceEEEeCCccccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence              123445777777766532   334567999999998 999999999999999999999999753

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.75  E-value=8.3e-18  Score=147.63  Aligned_cols=95  Identities=23%  Similarity=0.449  Sum_probs=70.8

Q ss_pred             EEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616          101 RQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus       101 k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      |+|||.||.++   ..+.|++|||||. ++.||||+...+.                                       
T Consensus         2 keG~L~kK~g~~~~~~k~Wk~rwfvL~-~~~L~~yk~~~~~---------------------------------------   41 (112)
T 3cxb_B            2 KEGMLHYKAGTSYLGKEHWKTCFVVLS-NGILYQYPDRTDV---------------------------------------   41 (112)
T ss_dssp             EEEEEEECCSCCCSSCCCCEEEEEEEE-TTEEEEESSSSCC---------------------------------------
T ss_pred             ceEEEEEeCCCCCCCCCCceEEEEEEE-CCEEEEECCCCCC---------------------------------------
Confidence            79999987543   5679999999998 6788888765321                                       


Q ss_pred             cccceeecccceee--cCCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIK--VDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       178 ~~~~~i~l~~~~v~--~~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      .+...|+|..+.+.  ...+...|+|||+|+++ .++|+|||+|++||++||.+|+.+|..
T Consensus        42 ~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~  102 (112)
T 3cxb_B           42 IPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSK  102 (112)
T ss_dssp             SCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence            12234666543322  22345578899999965 579999999999999999999988753

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.75  E-value=3e-18  Score=171.77  Aligned_cols=117  Identities=23%  Similarity=0.258  Sum_probs=104.4

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHhCCHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFA  595 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v  595 (638)
                      |+.+...+....+..|+. +++++..|..|+||||+||..|+.++|++|+++|+++|.+| ..|+||||+|+..|+.+++
T Consensus        49 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v  127 (244)
T 3ui2_A           49 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV  127 (244)
T ss_dssp             HHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence            444455556666777777 99999999999999999999999999999999999999998 7899999999999999999


Q ss_pred             HHHHhCCCCCCCccCCCCCHHHHHH----------------HcCCCcHHHHHHHhhC
Q 006616          596 KLLLTRGADPRAVNREGKTSLELAV----------------ESNFADSEVLAILSDS  636 (638)
Q Consensus       596 ~lLl~~gad~~~~d~~g~TpL~~A~----------------~~g~~d~eiv~lLle~  636 (638)
                      ++|+++|++++.+|..|.||||+|+                ..|+  .+++++|+++
T Consensus       128 ~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~--~~iv~~L~~~  182 (244)
T 3ui2_A          128 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL--EKVINVLEGQ  182 (244)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcCh--HHHHHHHHHh
Confidence            9999999999999999999999998                4565  7899999874

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.74  E-value=2e-18  Score=150.22  Aligned_cols=94  Identities=19%  Similarity=0.374  Sum_probs=73.8

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++++|||+|+   ..+.|+||||||+ ++.|+||+.+...                                      
T Consensus         6 ~~~~~~G~L~K~---~~k~Wk~RwfvL~-~~~L~yyk~~~~~--------------------------------------   43 (107)
T 2cof_A            6 SGLETSSYLNVL---VNSQWKSRWCSVR-DNHLHFYQDRNRS--------------------------------------   43 (107)
T ss_dssp             CCCTTCCEEEEE---ETTEEEEEEEEEC-SSCEEEECSSTTC--------------------------------------
T ss_pred             CCCcEeEEEEEe---cCCCcceEEEEEE-CCEEEEEeCCccc--------------------------------------
Confidence            345689999999   4678999999998 5577888765321                                      


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ..+...|.+..|.|.+.. +..++|||+|+++ .++|+|+|+|++|+++||.+|+.++
T Consensus        44 ~~~~~~i~l~~~~v~~~~-~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~  100 (107)
T 2cof_A           44 KVAQQPLSLVGCEVVPDP-SPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES  100 (107)
T ss_dssp             SEEEEEECTTTCEEECCC-BTTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             CCCeeEEeccceEEEECC-CCCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence            122345677788777643 3467899999999 7899999999999999999999775

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.74  E-value=2.3e-18  Score=173.01  Aligned_cols=129  Identities=18%  Similarity=0.171  Sum_probs=107.5

Q ss_pred             cCCCcccccccc-cCCcccccccccCCCCCCCc-----------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC
Q 006616          510 LERSSSSLTGNS-SDRSSSGSLNLAGTSEGQTM-----------DDLEGCTLLHLACDSADIGMLELLLQYGANINATDS  577 (638)
Q Consensus       510 ~~~~~~~l~~~~-~~~~~~~~~lL~~~~~~~~~-----------~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~  577 (638)
                      .+.+++++++.. ..+...++.+|+..|++++.           .|..|.||||+|+..|+.+++++|+++|+++|.+|.
T Consensus        42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  121 (256)
T 2etb_A           42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC  121 (256)
T ss_dssp             TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccc
Confidence            334444444433 12666777788888777663           346799999999999999999999999999999988


Q ss_pred             C-------------CCcHHHHHHHhCCHHHHHHHHh---CCCCCCCccCCCCCHHHHHHHcCCCcHH-------HHHHHh
Q 006616          578 R-------------GLTPLHRCILRGKAMFAKLLLT---RGADPRAVNREGKTSLELAVESNFADSE-------VLAILS  634 (638)
Q Consensus       578 ~-------------G~TpLh~A~~~g~~~~v~lLl~---~gad~~~~d~~g~TpL~~A~~~g~~d~e-------iv~lLl  634 (638)
                      .             |+||||+|+..|+.+++++|++   +|++++.+|..|.||||+|+..++...+       ++++|+
T Consensus       122 ~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll  201 (256)
T 2etb_A          122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL  201 (256)
T ss_dssp             SGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHH
Confidence            6             9999999999999999999999   9999999999999999999994433377       999999


Q ss_pred             hCCC
Q 006616          635 DSHG  638 (638)
Q Consensus       635 e~ga  638 (638)
                      ++||
T Consensus       202 ~~ga  205 (256)
T 2etb_A          202 QMGA  205 (256)
T ss_dssp             HHHH
T ss_pred             HcCC
Confidence            8764

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.74  E-value=4.2e-18  Score=146.98  Aligned_cols=93  Identities=27%  Similarity=0.496  Sum_probs=74.0

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      ++|||+|++ +..+.|++|||||. ++.|+||++..+.                                     ...+.
T Consensus         1 ~eG~L~K~g-~~~k~Wk~R~fvL~-~~~L~Yy~~~~~~-------------------------------------~~~~~   41 (103)
T 3rcp_A            1 MEGVLYKWT-NYLTGWQPRWFVLD-NGILSYYDSQDDV-------------------------------------CKGSK   41 (103)
T ss_dssp             CEEEEEEEC-CTTTCEEEEEEEEE-TTEEEEESSCC----------------------------------------CCCS
T ss_pred             CceEEEEcc-CCCCCeeceEEEEE-CCEEEEEecCCcc-------------------------------------cCCcc
Confidence            489999995 45779999999998 7889999876431                                     11234


Q ss_pred             ceeecccceeecCCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      +.|+|..|.|.+.++   ..++|.|+++ .++|+|+|+|++|+++||.+|+.++..
T Consensus        42 g~i~L~~~~v~~~~~---~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~   94 (103)
T 3rcp_A           42 GSIKMAVCEIKVHSA---DNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKAS   94 (103)
T ss_dssp             CEEEGGGCEEECCTT---CSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred             cEEEeeeeEEEEcCC---CCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            568888888876432   4789999998 699999999999999999999988754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.74  E-value=6.7e-18  Score=150.05  Aligned_cols=94  Identities=22%  Similarity=0.226  Sum_probs=89.0

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHc
Q 006616          543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES  622 (638)
Q Consensus       543 d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~  622 (638)
                      +..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhhCCC
Q 006616          623 NFADSEVLAILSDSHG  638 (638)
Q Consensus       623 g~~d~eiv~lLle~ga  638 (638)
                      |+  .+++++|+++|+
T Consensus        84 ~~--~~~v~~Ll~~ga   97 (123)
T 3aaa_C           84 GH--VSCVKLLLSKGA   97 (123)
T ss_dssp             TC--HHHHHHHHHTTC
T ss_pred             CC--HHHHHHHHHcCC
Confidence            98  899999999885

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.74  E-value=5.3e-18  Score=151.81  Aligned_cols=102  Identities=20%  Similarity=0.373  Sum_probs=73.5

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++++|||+|+++ ..+.|+||||||.+++.|+||+.....                                      
T Consensus         6 ~~~~~~G~L~K~g~-~~k~WkkRwfvL~~~~~L~yy~~~~~~--------------------------------------   46 (125)
T 1unq_A            6 VAIVKEGWLHKRGE-YIKTWRPRYFLLKNDGTFIGYKERPQD--------------------------------------   46 (125)
T ss_dssp             GCEEEEEEEEEECS-SSCCEEEEEEEEETTSEEEEESSCCCS--------------------------------------
T ss_pred             CCeeEEeeEEeccC-CccCccCcEEEEecCCEEEEEeCCCCC--------------------------------------
Confidence            45789999999954 578999999999977888888765331                                      


Q ss_pred             ccccceeecccceeec---CCCCCCCcceEEEec----CCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          177 SAARHTVNLLTSTIKV---DADQSDLRFCFRIIS----PTKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~---~~~~~~rr~cF~I~t----~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                       .+.+.|.|..+++..   ...+..++|||+|.+    +.++|+|+|+|++|+++||.+|+.+|.....
T Consensus        47 -~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  114 (125)
T 1unq_A           47 -VDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK  114 (125)
T ss_dssp             -HHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCceeEccceeEEeeeecccccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhccc
Confidence             111223333222210   011235689999995    4689999999999999999999999976543

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=2.1e-17  Score=147.11  Aligned_cols=98  Identities=23%  Similarity=0.466  Sum_probs=75.7

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++++|||+|+++...+.|+||||||. ++.|+||+....                                      
T Consensus        19 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~--------------------------------------   59 (122)
T 2yry_A           19 NAPVTKAGWLFKQASSGVKQWNKRWFVLV-DRCLFYYKDEKE--------------------------------------   59 (122)
T ss_dssp             TCCEEEEEEEEEECCSSSCCEEEEEEEEE-TTEEEEESSTTC--------------------------------------
T ss_pred             CCCccEEEEEEEECCCCCCCcEEEEEEEe-CCEEEEECCCCC--------------------------------------
Confidence            34578999999997556789999999998 678888876532                                      


Q ss_pred             cccccceeecccceeecC--CCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVD--ADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~--~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                       ..+.+.|+|..++|...  .+...++|||.|+++ .++|+|+|+|++|+++||.+|+.++
T Consensus        60 -~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  119 (122)
T 2yry_A           60 -ESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  119 (122)
T ss_dssp             -CSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             -CCcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence             12334567766665432  233467899999865 5999999999999999999999886

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.74  E-value=9.6e-18  Score=147.05  Aligned_cols=103  Identities=23%  Similarity=0.373  Sum_probs=71.1

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ..++++|||+|+++ ..+.|+||||||+.++.|+||+++.. .+.|.+                                
T Consensus         3 ~~~~~~G~L~K~g~-~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g~i--------------------------------   49 (112)
T 3aj4_A            3 MAFVKSGWLLRQST-ILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKV--------------------------------   49 (112)
T ss_dssp             CSCSEEEEEEEECS-SSCCEEEEEEEECTTSEEEEESSTTCCSEEEEE--------------------------------
T ss_pred             cceeEEEEEEeeCC-CCCCeeceEEEEeeCCEEEEEcCCCCCCCCccc--------------------------------
Confidence            45689999999954 57899999999955888999887643 111100                                


Q ss_pred             cccccceeecccc-eeec--CCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTS-TIKV--DADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       176 ~~~~~~~i~l~~~-~v~~--~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                       ......|+|... .+..  .++...++|||.|+++ .++|+|+|+|++|+++||.+|+.++
T Consensus        50 -~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           50 -HMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             -EHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             -cccccceeecccccccccCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence             111122333322 1221  1223344799999976 7999999999999999999999875

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.74  E-value=1.7e-17  Score=146.55  Aligned_cols=98  Identities=30%  Similarity=0.552  Sum_probs=75.8

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++++|||+|+++ ..+.|++|||||. ++.|+||+....                                      
T Consensus         5 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~-~~~L~yy~~~~~--------------------------------------   44 (118)
T 1v89_A            5 SSGPIKMGWLKKQRS-IVKNWQQRYFVLR-AQQLYYYKDEED--------------------------------------   44 (118)
T ss_dssp             SSCEEEEEEEEEECS-SSSCEEEEEEEEE-TTEEEEESSSSC--------------------------------------
T ss_pred             CCCCcEEEEEEecCC-CCCCccEEEEEEE-CCEEEEEeCCCC--------------------------------------
Confidence            346789999999954 5678999999999 567888876532                                      


Q ss_pred             cccccceeecccceeecCC--CCCCCcceEEEec--------CCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVDA--DQSDLRFCFRIIS--------PTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~~--~~~~rr~cF~I~t--------~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                       ..+.+.|+|..|++....  ....++|||+|++        +.++|+|+|+|++|+++||.+|+.+|.
T Consensus        45 -~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           45 -TKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             -CSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             -CCceEEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence             123345777777665322  2335689999998        679999999999999999999999986

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.74  E-value=1.3e-17  Score=149.77  Aligned_cols=99  Identities=22%  Similarity=0.470  Sum_probs=77.6

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++++|||+|+++...+.|+||||||. ++.|+||+.+..                                      
T Consensus        18 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~--------------------------------------   58 (128)
T 2dkp_A           18 NAPVVRRGWLYKQDSTGMKLWKKRWFVLS-DLCLFYYRDEKE--------------------------------------   58 (128)
T ss_dssp             TSCCCEEEEEEEECCSSSCCEEEEEEEEE-TTEEEEESSTTC--------------------------------------
T ss_pred             CCCcEEEEEEEEeCCCCCCCceeEEEEEe-CCEEEEECCCCC--------------------------------------
Confidence            34568999999997646789999999998 678888876532                                      


Q ss_pred             cccccceeecccceeecCC--CCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVDA--DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~~--~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                       ..+.+.|+|..+.|....  +...++|||+|++++ ++|+|+|+|++|+++||.+|+.++.
T Consensus        59 -~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           59 -EGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             -CSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             -cccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence             123455777777766532  223678999999986 9999999999999999999998863

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.74  E-value=3.5e-18  Score=158.12  Aligned_cols=107  Identities=23%  Similarity=0.261  Sum_probs=98.3

Q ss_pred             ccccccc-CCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q 006616          527 SGSLNLA-GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP  605 (638)
Q Consensus       527 ~~~~lL~-~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~  605 (638)
                      ..+..|+ ..+.+++..|..|.||||+ |..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus        16 ~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   94 (156)
T 1bd8_A           16 QEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV   94 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            3333344 3456899999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          606 RAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       606 ~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      +.+|..|.||||+|+..|+  .+++++|+++
T Consensus        95 ~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~  123 (156)
T 1bd8_A           95 NVPDGTGALPIHLAVQEGH--TAVVSFLAAE  123 (156)
T ss_dssp             CCCCTTSCCHHHHHHHHTC--HHHHHHHHTT
T ss_pred             CCcCCCCCcHHHHHHHhCh--HHHHHHHHhc
Confidence            9999999999999999998  8999999975

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.74  E-value=1.4e-17  Score=149.15  Aligned_cols=96  Identities=26%  Similarity=0.518  Sum_probs=76.3

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++|+|||+|+++ ..+.|+||||||. ++.|+||+++..                                       .
T Consensus         4 ~~~~~G~L~K~g~-~~~~Wk~R~fvL~-~~~L~yy~~~~~---------------------------------------~   42 (127)
T 1fgy_A            4 NPDREGWLLKLGG-RVKTWKRRWFILT-DNCLYYFEYTTD---------------------------------------K   42 (127)
T ss_dssp             SCSEEEEEEEECS-SSCCEEEEEEEEE-TTEEEEESSTTC---------------------------------------S
T ss_pred             CCceEeEEEEECC-CCCCeEEEEEEEE-CCEEEEeCCCCC---------------------------------------C
Confidence            4679999999954 4678999999998 677888876532                                       1


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecCC----------------------eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT----------------------KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~----------------------rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      .+.+.|+|..+++... .+..+++||+|.+++                      ++|+|+|+|++|+++||.+|+.+|..
T Consensus        43 ~~~g~i~L~~~~v~~~-~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  121 (127)
T 1fgy_A           43 EPRGIIPLENLSIREV-LDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             SCSEEEECTTCEEEEE-CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEECCceEEEEc-cCCCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence            2344577877777653 334778999999874                      78999999999999999999999864

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.74  E-value=1.3e-17  Score=150.02  Aligned_cols=100  Identities=26%  Similarity=0.422  Sum_probs=77.4

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecC-ceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~-~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      ...++++|||+|+++ ..+.|++|||||.++ +.|+||++...                                     
T Consensus        15 ~~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yy~~~~~-------------------------------------   56 (129)
T 1x05_A           15 RGVIIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYDPAGA-------------------------------------   56 (129)
T ss_dssp             CSEEEEEEEEEECCS-SCCCCEEEEEEEEETTTEEEEECSSCC-------------------------------------
T ss_pred             cCCceEEEEEEecCC-CCCCCeeEEEEEeCCCCEEEEECCCCC-------------------------------------
Confidence            456789999999954 577899999999975 48899876522                                     


Q ss_pred             ccccccceeecccceeecCCCC-----CCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDADQ-----SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~-----~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                        ..+.+.|+|..|++....+.     .+++|||+|++++ ++|+|+|+|++|+++||.+|+.+|..
T Consensus        57 --~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~  121 (129)
T 1x05_A           57 --EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRT  121 (129)
T ss_dssp             --SSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             --CcceeEEEccCCEEEEccCCccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence              12345577877776542222     1368999999986 67999999999999999999998853

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.74  E-value=1.6e-17  Score=156.08  Aligned_cols=100  Identities=22%  Similarity=0.379  Sum_probs=71.5

Q ss_pred             cceeEEEEEEeecCCC----CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616           97 VQTIRQGYLSKRSSNL----RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV  172 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~----~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  172 (638)
                      ..+++||||+||+.+.    .++||||||||+ ++.|+||+++...                                  
T Consensus        13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~-~~~L~Yyk~~~~~----------------------------------   57 (164)
T 2lul_A           13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLT-KSMLTYYEGRAEK----------------------------------   57 (164)
T ss_dssp             SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEE-SSEEEEECCCSSS----------------------------------
T ss_pred             CCeeEEEEEEEecCCCCCCCCCCceeEEEEEE-CCEEEEEeccCcc----------------------------------
Confidence            4678999999997542    357999999998 5677788764321                                  


Q ss_pred             CCccccccceeecccce-eecC-----CCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          173 HDEKSAARHTVNLLTST-IKVD-----ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       173 ~~~~~~~~~~i~l~~~~-v~~~-----~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                          ..+.+.|+|..+. |...     .....+.+||+|++++|+|+|+|+|++|+++||++|+.+|..
T Consensus        58 ----~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~~  122 (164)
T 2lul_A           58 ----KYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKN  122 (164)
T ss_dssp             ----CCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             ----cccccEEEEeeeEEEEeccccccCcccccceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                1112234443322 1111     112346799999999999999999999999999999999863

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.74  E-value=1.1e-17  Score=147.64  Aligned_cols=97  Identities=21%  Similarity=0.455  Sum_probs=72.8

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEec-CceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~-~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ..++++|||+|+++ ..+.|+||||||.. ++.|+||++...                                      
T Consensus         6 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~~~~~L~yy~~~~~--------------------------------------   46 (117)
T 1v5u_A            6 SGRSYEGILYKKGA-FMKPWKARWFVLDKTKHQLRYYDHRMD--------------------------------------   46 (117)
T ss_dssp             CSSSEEEEEEECCC-SSSCCEEEEEEEETTTTEEEEESSSSC--------------------------------------
T ss_pred             CCccEEEEEEecCC-CCCCceeeEEEEECCCCEEEEeecCCC--------------------------------------
Confidence            45679999999955 47799999999985 578888876532                                      


Q ss_pred             cccccceeecccceeecC-------CCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVD-------ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~-------~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                       ..+.+.|+|..+.+...       ++...++|||+|.++.++|+|+|+|++|+++||.+|+.+|
T Consensus        47 -~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i  110 (117)
T 1v5u_A           47 -TECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL  110 (117)
T ss_dssp             -SSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             -CccceEEEccCcEEEeecCccccccccCCCCeEEEEECCCceEEEECCCHHHHHHHHHHHHHHh
Confidence             11233455555443211       1224567999999999999999999999999999998765

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.74  E-value=2.8e-17  Score=144.86  Aligned_cols=95  Identities=17%  Similarity=0.399  Sum_probs=73.6

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++++|||+|+++...+.|+||||||. ++.|+||+.+..                                      
T Consensus         5 ~~~~~~~G~L~K~~~~~~~~WkkR~fvL~-~~~L~yy~~~~~--------------------------------------   45 (115)
T 2cod_A            5 SSGKVKSGWLDKLSPQGKRMFQKRWVKFD-GLSISYYNNEKE--------------------------------------   45 (115)
T ss_dssp             CSCCCEEEEEEECCSSSSSCCEEEEEEEC-SSEEEEEESSCC--------------------------------------
T ss_pred             CCCccEEEEEEEcCCCCCCCCceEEEEEE-CCEEEEEcCCCC--------------------------------------
Confidence            34567999999996646789999999998 667888877543                                      


Q ss_pred             cccccceeecccce-eecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTST-IKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       176 ~~~~~~~i~l~~~~-v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                       ..+.+.|+|..++ |...    + ++||.|++++++|+|+|+|++|+++||.+|+.++..
T Consensus        46 -~~~~g~i~l~~~~~v~~~----~-~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~~~  100 (115)
T 2cod_A           46 -MYSKGIIPLSAISTVRVQ----G-DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS  100 (115)
T ss_dssp             -SSCCCEEETTTEEEEEEE----T-TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             -cccCCEEECCcceEEEeC----C-CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence             1123346665543 3321    1 699999999999999999999999999999999854

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.73  E-value=1.4e-17  Score=147.40  Aligned_cols=97  Identities=18%  Similarity=0.376  Sum_probs=74.9

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      ++++|||+||+. ..++|++|||||..+ .|+||+.....                                    ....
T Consensus         6 ~~k~G~L~Kk~~-~~k~W~~rwfVL~~~-~L~yyK~~~~~------------------------------------~d~~   47 (120)
T 4a6h_A            6 EIKSGFLERRSK-FLKSYSKGYYVLTPN-FLHEFKTADRK------------------------------------KDLV   47 (120)
T ss_dssp             CSEEEEEEEEET-TTTEEEEEEEEECSS-EEEEESSCCTT------------------------------------TCCS
T ss_pred             ccEEEEEEEcCC-CCCCCccEEEEEeCC-EEEEEcCCCcC------------------------------------cCCC
Confidence            789999999965 578999999999966 78888765321                                    0123


Q ss_pred             ccceeecccceeecCCCCCC--------CcceEEEecCC-------eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQSD--------LRFCFRIISPT-------KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~--------rr~cF~I~t~~-------rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +.+.|.|..|+|....++..        +.++|.|..++       ++|+|+|+|.+||++||++|+.++
T Consensus        48 P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           48 PVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             CSEEEEGGGEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCEEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            45678899999986433322        67889998765       599999999999999999999874

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.6e-17  Score=145.31  Aligned_cols=97  Identities=24%  Similarity=0.468  Sum_probs=75.2

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++++|||+|+++...+.|+||||||. ++.|+||++...                                       
T Consensus         9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~-~~~L~yy~~~~~---------------------------------------   48 (117)
T 2d9y_A            9 APVTKAGWLFKQASSGVKQWNKRWFVLV-DRCLFYYKDEKE---------------------------------------   48 (117)
T ss_dssp             CCCCEEEEEEEECTTSSSCEEEEEEEEE-TTEEEEESSTTC---------------------------------------
T ss_pred             CCeeEEEEEEEeCCCCCCCceEEEEEEC-CCEEEEECCCCC---------------------------------------
Confidence            4567999999997556789999999998 678888876532                                       


Q ss_pred             ccccceeecccceeecC--CCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVD--ADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~--~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ..+.+.|+|..++|...  .+...++|||.|+++ .++|+|+|+|++|+++||.+|+.++
T Consensus        49 ~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~  108 (117)
T 2d9y_A           49 ESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  108 (117)
T ss_dssp             CSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             CCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            12344577777766432  233467899999765 5999999999999999999999876

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.73  E-value=1.1e-17  Score=149.54  Aligned_cols=102  Identities=17%  Similarity=0.290  Sum_probs=75.4

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCC-----CCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC-----SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG  171 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~-----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  171 (638)
                      ..++|+|||+|+++ ..+.|++|||||.+ ..||||+...     ..|.|                              
T Consensus        10 ~~~~k~G~L~K~g~-~~k~Wk~RwfVL~~-~~L~yyk~~~~~~~e~~plg------------------------------   57 (124)
T 2w2x_D           10 DEHKQQGELYMWDS-IDQKWTRHFCAIAD-AKLSFSDDIEQTMEEDNPLG------------------------------   57 (124)
T ss_dssp             ---CCEEEEEEEET-TTTEEEEEEEEEET-TEEEEEEEHHHHHHCSSCCC------------------------------
T ss_pred             hhcceeEEEEEECC-CCCCceEeEEEEEC-CEEEEEcccccccccccccC------------------------------
Confidence            45679999999954 56789999999994 5577776531     11111                              


Q ss_pred             CCCccccccceeecccceeecCCCC-CCCcceEEEecCC---eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          172 VHDEKSAARHTVNLLTSTIKVDADQ-SDLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       172 ~~~~~~~~~~~i~l~~~~v~~~~~~-~~rr~cF~I~t~~---rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                           ..+.+.|+|..|+|....++ ..++|||+|.+++   ++|+|+|+|++|+++||.||+.++..
T Consensus        58 -----~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~  120 (124)
T 2w2x_D           58 -----SLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWK  120 (124)
T ss_dssp             -----CSCSEEEEGGGEEEEECTTCBTTBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred             -----CccccEEECCCCEEEEccCCcCCCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence                 23456789999988764432 4578999999874   68999999999999999999998743

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.73  E-value=4.1e-18  Score=171.49  Aligned_cols=128  Identities=20%  Similarity=0.164  Sum_probs=107.6

Q ss_pred             CCCcccccccc-cCCcccccccccCCCC-----------CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC--
Q 006616          511 ERSSSSLTGNS-SDRSSSGSLNLAGTSE-----------GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD--  576 (638)
Q Consensus       511 ~~~~~~l~~~~-~~~~~~~~~lL~~~~~-----------~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d--  576 (638)
                      +.+++++++.. ..+...++.+|+..|+           +++..|..|+||||+||..|+.++|++|+++|+++|..+  
T Consensus        46 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  125 (260)
T 3jxi_A           46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG  125 (260)
T ss_dssp             CCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEE
T ss_pred             CCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccc
Confidence            45555555432 5566677777777663           344556689999999999999999999999999999998  


Q ss_pred             ------------CCCCcHHHHHHHhCCHHHHHHHHh---CCCCCCCccCCCCCHHHHHHHcCCCc-------HHHHHHHh
Q 006616          577 ------------SRGLTPLHRCILRGKAMFAKLLLT---RGADPRAVNREGKTSLELAVESNFAD-------SEVLAILS  634 (638)
Q Consensus       577 ------------~~G~TpLh~A~~~g~~~~v~lLl~---~gad~~~~d~~g~TpL~~A~~~g~~d-------~eiv~lLl  634 (638)
                                  ..|+||||+|+..|+.++|++|++   +|++++.+|..|.||||+|+..++..       .+++++|+
T Consensus       126 ~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll  205 (260)
T 3jxi_A          126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL  205 (260)
T ss_dssp             CCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred             cccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence                        689999999999999999999999   99999999999999999999887532       48999999


Q ss_pred             hCCC
Q 006616          635 DSHG  638 (638)
Q Consensus       635 e~ga  638 (638)
                      ++||
T Consensus       206 ~~ga  209 (260)
T 3jxi_A          206 IKCA  209 (260)
T ss_dssp             HHHH
T ss_pred             HhCc
Confidence            8764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=1.5e-17  Score=145.10  Aligned_cols=93  Identities=28%  Similarity=0.392  Sum_probs=86.0

Q ss_pred             CCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHH
Q 006616          539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLEL  618 (638)
Q Consensus       539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~  618 (638)
                      +...|.+|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34457789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCcHHHHHHH
Q 006616          619 AVESNFADSEVLAIL  633 (638)
Q Consensus       619 A~~~g~~d~eiv~lL  633 (638)
                      |+..|+  .+++++|
T Consensus        97 A~~~~~--~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGN--EDLAEIL  109 (110)
T ss_dssp             HHHHTC--HHHHHHH
T ss_pred             HHHcCC--HHHHHHh
Confidence            999998  8899987

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.72  E-value=1.9e-17  Score=153.12  Aligned_cols=104  Identities=23%  Similarity=0.385  Sum_probs=80.0

Q ss_pred             CcceeEEEEEEeecC-----CCCCCceeeEEEEecC--c--eEEEEecCCCCCCCCCCccccccCcCcccCCcccccccc
Q 006616           96 KVQTIRQGYLSKRSS-----NLRGDWKRRFFVLDSR--G--MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSS  166 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~-----~~~~~WkrRwfvL~~~--~--~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~  166 (638)
                      ...++++|||+|++.     ...+.|+||||||.++  |  .|+||+....                             
T Consensus        15 ~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~-----------------------------   65 (150)
T 1wg7_A           15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI-----------------------------   65 (150)
T ss_dssp             SCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC-----------------------------
T ss_pred             CCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCC-----------------------------
Confidence            355789999999964     2457899999999864  2  7888876531                             


Q ss_pred             ccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          167 HYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                               ...+.+.|+|..|.+... ....++|||+|++++ ++|+|+|+|++|+++||.+|+.+|.....
T Consensus        66 ---------~~~~~g~I~L~~~~~~~~-~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~~~  128 (150)
T 1wg7_A           66 ---------SKEPKGSIFLDSCMGVVQ-NNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFE  128 (150)
T ss_dssp             ---------SSCCSEEECTTTCCEECC-CCSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCcCcEEecccCEEEec-CCCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhhhH
Confidence                     122345577877777753 334678999999996 89999999999999999999999975543

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.72  E-value=2.8e-17  Score=151.70  Aligned_cols=101  Identities=23%  Similarity=0.544  Sum_probs=77.1

Q ss_pred             cceeEEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           97 VQTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ..++|+|||+|+++.   ..+.|+||||||+ ++.|+||+....                                    
T Consensus        15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~-~~~L~yyk~~~~------------------------------------   57 (148)
T 1u5f_A           15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALS-KTVFYYYGSDKD------------------------------------   57 (148)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEE-TTEEEEESSTTC------------------------------------
T ss_pred             CCccEEEEEEEeCCCCCCcCCCceeEEEEEE-CCEEEEEcCCCC------------------------------------
Confidence            457899999999753   3479999999998 678888876532                                    


Q ss_pred             CccccccceeecccceeecCCC---CCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          174 DEKSAARHTVNLLTSTIKVDAD---QSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~---~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                         ..+.+.|.|..+++...++   +..++|||.|++++ ++|+|+|+|++|+++||.+|+.+|....
T Consensus        58 ---~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~  122 (148)
T 1u5f_A           58 ---KQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLG  122 (148)
T ss_dssp             ---SSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC---
T ss_pred             ---cccceEEEcCCcEEEECCCcccCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence               1234457777777764332   33557999999997 9999999999999999999999986543

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.72  E-value=2.5e-17  Score=148.17  Aligned_cols=99  Identities=28%  Similarity=0.480  Sum_probs=74.2

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecC-ceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSR-GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~-~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ..++++|||+|++. ..+.|+||||||..+ +.|+||+.+..                                      
T Consensus        16 ~~~~~~G~L~K~g~-~~~~Wk~R~fvL~~d~~~L~yy~~~~~--------------------------------------   56 (129)
T 1x1g_A           16 GTVVKQGYLAKQGH-KRKNWKVRRFVLRKDPAFLHYYDPSKE--------------------------------------   56 (129)
T ss_dssp             SEEEEEEEEEEECS-SSSSEEEEEEEEEESSCEEEEECSSSC--------------------------------------
T ss_pred             CCEEEEEEEEEECC-CCCCeeeEEEEEeCCCCeEEEeCCCCc--------------------------------------
Confidence            46789999999954 478999999999964 78999987411                                      


Q ss_pred             cccccceeecccceeecCCCC--------CCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVDADQ--------SDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~~~~--------~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ...+.+.|+|..|.|....+.        ..++|||.|++++ ++|+|+|+|++|+++||.+|+.+|.
T Consensus        57 ~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  124 (129)
T 1x1g_A           57 ENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS  124 (129)
T ss_dssp             CSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred             CCccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            012233466666655432211        1167999999997 6899999999999999999998874

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.71  E-value=2.3e-17  Score=142.96  Aligned_cols=98  Identities=19%  Similarity=0.407  Sum_probs=72.4

Q ss_pred             EEEEEEeecC-------CCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616          101 RQGYLSKRSS-------NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus       101 k~GyL~Kr~~-------~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ++|||+|++.       ...+.|++|||||+ ++.|+||+.......+                                
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~-~~~L~yyk~~~~~~~~--------------------------------   47 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVIN-NQEMGFYKDAKSAASG--------------------------------   47 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEE-TTEEEEESSHHHHHHT--------------------------------
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEE-CCEEEEEeCCcccccC--------------------------------
Confidence            4899999961       35679999999998 6788888765320000                                


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                       ....+...|+|..+.+.+..+...++|||+|++++ ++|+|+|+|++|+.+||.+|+.|
T Consensus        48 -~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           48 -IPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             -CCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             -CCCCCcceEECCCCEEEEcccccCCccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence             00112334777777766555556788999999876 99999999999999999999864

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.71  E-value=2.3e-17  Score=147.50  Aligned_cols=100  Identities=23%  Similarity=0.484  Sum_probs=74.4

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++++|||+|++ ...+.|+||||||. ++.|+||+....                                      
T Consensus        11 ~~~~~~~G~L~K~g-~~~~~Wk~R~fvL~-~~~L~yy~~~~~--------------------------------------   50 (125)
T 1eaz_A           11 DSAVIKAGYCVKQG-AVMKNWKRRYFQLD-ENTIGYFKSELE--------------------------------------   50 (125)
T ss_dssp             -CCCSEEEEEEEEC-TTTCCEEEEEEEEC-SSEEEEESSTTC--------------------------------------
T ss_pred             CCCccEEEEEEEeC-CCCCCcceEEEEEe-CCEEEEEcCCCC--------------------------------------
Confidence            34568999999994 45778999999998 567888876532                                      


Q ss_pred             cccccceeecccce-eecCC--CCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTST-IKVDA--DQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       176 ~~~~~~~i~l~~~~-v~~~~--~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                       ..+.+.|+|..+. |....  +...++|||+|++++++|+|+|+|++|+++||.+|+.+|...
T Consensus        51 -~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i~~~  113 (125)
T 1eaz_A           51 -KEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ  113 (125)
T ss_dssp             -SSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             -CcceeEEEcccceEEeeccccccCCcCCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence             1123346665543 22111  123568999999999999999999999999999999999753

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.71  E-value=2.3e-17  Score=149.42  Aligned_cols=94  Identities=30%  Similarity=0.347  Sum_probs=90.0

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHc
Q 006616          543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVES  622 (638)
Q Consensus       543 d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~  622 (638)
                      ...|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhhCCC
Q 006616          623 NFADSEVLAILSDSHG  638 (638)
Q Consensus       623 g~~d~eiv~lLle~ga  638 (638)
                      |+  .+++++|+++|+
T Consensus        91 ~~--~~~v~~Ll~~g~  104 (136)
T 2jab_A           91 GH--LEIAEVLLKHGA  104 (136)
T ss_dssp             TC--HHHHHHHHHTTC
T ss_pred             CC--HHHHHHHHHcCC
Confidence            98  899999999885

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.71  E-value=2.3e-17  Score=155.48  Aligned_cols=101  Identities=16%  Similarity=0.315  Sum_probs=68.7

Q ss_pred             ceeEEEEEEeecCC----CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           98 QTIRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~----~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      .++|+|||+||+.+    .+++||||||||+ +..|+||++..+..                                  
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~-~~~L~Yyk~~~~~~----------------------------------   46 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLT-VHKLSYYEYDFERG----------------------------------   46 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEEC-SSEEEEEEEETTTT----------------------------------
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEc-CCEEEEEecCCccC----------------------------------
Confidence            35799999999643    2478999999998 56777777521100                                  


Q ss_pred             Cccccccceeecccce-eecC---CC-CCCC---------------------cceEEEecCCeeEEEEeCCHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTST-IKVD---AD-QSDL---------------------RFCFRIISPTKNYTLQAESALDQMDWIE  227 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~-v~~~---~~-~~~r---------------------r~cF~I~t~~rt~~lqA~se~e~~~Wi~  227 (638)
                       ....+.+.|.|..+. |...   .+ ..++                     +|||+|++++++|+|+|+|++|+++||+
T Consensus        47 -~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~  125 (169)
T 1btk_A           47 -RRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIH  125 (169)
T ss_dssp             -EEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHH
T ss_pred             -CCCceeeEEECcceEEEEeccCCCCcchhcccccccCcccccccccccccccccEEEEeCCceEEEEcCCHHHHHHHHH
Confidence             011223345554332 1111   00 1111                     2999999999999999999999999999


Q ss_pred             HHHHHHH
Q 006616          228 KITGVIA  234 (638)
Q Consensus       228 ai~~~i~  234 (638)
                      +|+.+|.
T Consensus       126 aI~~~i~  132 (169)
T 1btk_A          126 QLKNVIR  132 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999885

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.71  E-value=3.4e-17  Score=157.86  Aligned_cols=145  Identities=17%  Similarity=0.147  Sum_probs=119.3

Q ss_pred             chhhHHHHHhhhhccc----cCCCcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHH-Hc
Q 006616          494 SSLTLAKAMLLNEQTS----LERSSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLL-QY  568 (638)
Q Consensus       494 ~~~~l~~~ll~~~~~~----~~~~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~  568 (638)
                      .....++.++......    .....++++.+...+...++.+|+..|++++..|..|.||||+|+..|+.+++++|+ ..
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~   95 (201)
T 3hra_A           16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA   95 (201)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            3445566665543311    112234455555566677888899999999999999999999999999999999999 56


Q ss_pred             CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCCccCCCCCHHHHHHHcCCCc---HHHHHHHhhCCC
Q 006616          569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFAD---SEVLAILSDSHG  638 (638)
Q Consensus       569 gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g-ad~~~~d~~g~TpL~~A~~~g~~d---~eiv~lLle~ga  638 (638)
                      +++++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..+...   .+++++|+++|+
T Consensus        96 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga  169 (201)
T 3hra_A           96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA  169 (201)
T ss_dssp             CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTC
T ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCC
Confidence            7899999999999999999999999999999998 999999999999999999987421   799999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.71  E-value=6.8e-18  Score=171.41  Aligned_cols=165  Identities=17%  Similarity=0.174  Sum_probs=125.9

Q ss_pred             ccceecccccccchhhhhhhc---ccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccc-cCCcccccccc
Q 006616          457 AHQIWEGVRTNDKKAVYRHIV---NFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNS-SDRSSSGSLNL  532 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl---~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~-~~~~~~~~~lL  532 (638)
                      ...|+.|+..|+.+.|..+|.   ..+++++.....                 .+..+.+++++++.. ..+...++.+|
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-----------------~~~~g~tpL~~A~~~~~~g~~~~v~~L   76 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK-----------------DPETGKTCLLKAMLNLHNGQNDTIALL   76 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGS-----------------CTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccc-----------------cCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence            367899999999887765553   356666532100                 011123444444432 23555566666


Q ss_pred             cCCCCCC-----------CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCC--------------CCCcHHHHHH
Q 006616          533 AGTSEGQ-----------TMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDS--------------RGLTPLHRCI  587 (638)
Q Consensus       533 ~~~~~~~-----------~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~--------------~G~TpLh~A~  587 (638)
                      +..|+++           ...|..|.||||+|+..|+.++|++||++|++++.++.              .|+||||+|+
T Consensus        77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  156 (273)
T 2pnn_A           77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA  156 (273)
T ss_dssp             HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred             HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH
Confidence            6665432           22567899999999999999999999999999999997              7999999999


Q ss_pred             HhCCHHHHHHHHh---CCCCCCCccCCCCCHHHHHHHcCCCc-------HHHHHHHhhCCC
Q 006616          588 LRGKAMFAKLLLT---RGADPRAVNREGKTSLELAVESNFAD-------SEVLAILSDSHG  638 (638)
Q Consensus       588 ~~g~~~~v~lLl~---~gad~~~~d~~g~TpL~~A~~~g~~d-------~eiv~lLle~ga  638 (638)
                      ..|+.+++++|++   +|++++.+|.+|.||||+|+..|+..       .+++++|+++|+
T Consensus       157 ~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga  217 (273)
T 2pnn_A          157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA  217 (273)
T ss_dssp             HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence            9999999999999   99999999999999999999988622       579999998763

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.70  E-value=5.9e-17  Score=158.30  Aligned_cols=99  Identities=22%  Similarity=0.558  Sum_probs=77.5

Q ss_pred             cceeEEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           97 VQTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ..++|+|||+|+++.   ..+.|+||||||+ ++.|+||+....                                    
T Consensus       104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~-~~~L~Yyk~~~~------------------------------------  146 (211)
T 1u5e_A          104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALS-KTVFYYYGSDKD------------------------------------  146 (211)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEE-TTEEEEESSTTC------------------------------------
T ss_pred             CCccEEEEEEEECCCCCcCCCCcEeEEEEEE-CCEEEEEcCCCC------------------------------------
Confidence            458999999999653   4679999999998 678888876533                                    


Q ss_pred             CccccccceeecccceeecCC---CCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDA---DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~---~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                         ..+.+.|.|..+++...+   .+..++|||.|++++ |+|+|+|+|++|+++||.+|+.+|..
T Consensus       147 ---~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~  209 (211)
T 1u5e_A          147 ---KQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD  209 (211)
T ss_dssp             ---SSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ---ccceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence               123345777776665432   233557999999996 99999999999999999999999864

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.70  E-value=6.9e-17  Score=140.00  Aligned_cols=93  Identities=15%  Similarity=0.279  Sum_probs=68.7

Q ss_pred             eeEEEEEEeecCCCCC-CceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           99 TIRQGYLSKRSSNLRG-DWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~-~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ++|+|||+|+.++..+ +||+|||||. +..||||+...+                                       .
T Consensus        12 VirkGWL~k~~~g~~k~~wk~rWFVLt-~~~L~yyKd~~e---------------------------------------k   51 (125)
T 1dyn_A           12 VIRKGWLTINNIGIMKGGSKEYWFVLT-AENLSWYKDDEE---------------------------------------K   51 (125)
T ss_dssp             EEEEEEEEESCCCGGGTSSEEEEEEEE-SSEEEEESSTTC---------------------------------------S
T ss_pred             eEEEEEEEEecCccccCCceeeEEEEe-ccceeeecCCcc---------------------------------------c
Confidence            7999999997566565 5999999999 556666665433                                       1


Q ss_pred             cccceeecccceeecCCC-CCCCcceEEEecCC--------eeEEEEeCCHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDAD-QSDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~-~~~rr~cF~I~t~~--------rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      -+.+.|.|....|+...+ ...++|||+|.+++        ++|.|.|+|.+|+++||++|..
T Consensus        52 e~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~r  114 (125)
T 1dyn_A           52 EKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR  114 (125)
T ss_dssp             CEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHH
T ss_pred             ccceEEECCCceEeccCCCCCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHh
Confidence            233446666666664222 12678999999875        4899999999999999999944

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.70  E-value=2.9e-17  Score=148.81  Aligned_cols=101  Identities=23%  Similarity=0.424  Sum_probs=74.8

Q ss_pred             ceeEEEEEEee--cCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           98 QTIRQGYLSKR--SSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        98 ~~~k~GyL~Kr--~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      .++++|||+|+  ++ ..+.|+||||||. ++.|+||+.+.+                                    +.
T Consensus         4 ~v~~~G~L~K~~~~~-~~~~WkrRwfvL~-~~~L~yyk~~~d------------------------------------~~   45 (134)
T 2y7b_A            4 SVEERGFLTIFEDVS-GFGAWHRRWCVLS-GNCISYWTYPDD------------------------------------EK   45 (134)
T ss_dssp             CCCEEEEEEEEEEET-TEEEEEEEEEEEE-TTEEEEESSHHH------------------------------------HT
T ss_pred             CceEEeeEEEEcCCC-CCCCcEEEEEEEE-CCEEEEECCCCc------------------------------------cc
Confidence            46799999998  43 4578999999998 568888875421                                    01


Q ss_pred             cccccceeecccce---eecCCCC-CCCcceEEEec--CC------------------eeEEEEeCCHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTST---IKVDADQ-SDLRFCFRIIS--PT------------------KNYTLQAESALDQMDWIEKITG  231 (638)
Q Consensus       176 ~~~~~~~i~l~~~~---v~~~~~~-~~rr~cF~I~t--~~------------------rt~~lqA~se~e~~~Wi~ai~~  231 (638)
                      ...+.+.|+|..|+   |...+.+ ..++|||+|.+  |.                  ++|+|+|+|++|+++||.+|+.
T Consensus        46 ~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~  125 (134)
T 2y7b_A           46 RKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQ  125 (134)
T ss_dssp             TSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccCceEEEEhhhCccccccccchhhccCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHH
Confidence            12344568887776   4432221 35789999997  43                  4799999999999999999999


Q ss_pred             HHHHH
Q 006616          232 VIASL  236 (638)
Q Consensus       232 ~i~~~  236 (638)
                      +|..+
T Consensus       126 ~i~~~  130 (134)
T 2y7b_A          126 VLVDI  130 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99754

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.69  E-value=1.3e-16  Score=141.24  Aligned_cols=92  Identities=39%  Similarity=0.594  Sum_probs=89.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCC
Q 006616          545 EGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNF  624 (638)
Q Consensus       545 ~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~  624 (638)
                      +|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcHHHHHHHhhCCC
Q 006616          625 ADSEVLAILSDSHG  638 (638)
Q Consensus       625 ~d~eiv~lLle~ga  638 (638)
                        .+++++|+++|+
T Consensus        81 --~~~~~~Ll~~g~   92 (126)
T 1n0r_A           81 --LEVVKLLLEAGA   92 (126)
T ss_dssp             --HHHHHHHHHTTC
T ss_pred             --HHHHHHHHHcCC
Confidence              899999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=158.76  Aligned_cols=106  Identities=18%  Similarity=0.222  Sum_probs=92.7

Q ss_pred             cccCCCCCCCcC---CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          531 NLAGTSEGQTMD---DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       531 lL~~~~~~~~~~---d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      .|+..+++++..   +..|.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus         3 ~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~   82 (229)
T 2vge_A            3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS   82 (229)
T ss_dssp             -------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            355566666544   44577889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|..|.||||+|+..|+  .+++++|+++|+
T Consensus        83 ~d~~g~tpLh~A~~~g~--~~~v~~Ll~~ga  111 (229)
T 2vge_A           83 PDSHGWTPLHCAASCND--TVICMALVQHGA  111 (229)
T ss_dssp             CCTTCCCHHHHHHHTTC--HHHHHHHHTTTC
T ss_pred             CCCCCCCHHHHHHHcCC--HHHHHHHHHcCC
Confidence            99999999999999998  999999999885

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.69  E-value=2e-17  Score=157.83  Aligned_cols=93  Identities=29%  Similarity=0.247  Sum_probs=89.2

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc-CCCCCHHHHHHH
Q 006616          543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLELAVE  621 (638)
Q Consensus       543 d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d-~~g~TpL~~A~~  621 (638)
                      +..|.||||+|+..|+.+++++|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578999999999999999999999 99999999999999999999999999999999999999998 899999999999


Q ss_pred             cCCCcHHHHHHHhhCCC
Q 006616          622 SNFADSEVLAILSDSHG  638 (638)
Q Consensus       622 ~g~~d~eiv~lLle~ga  638 (638)
                      .|+  .+++++|+++|+
T Consensus       120 ~~~--~~~v~~Ll~~ga  134 (183)
T 3deo_A          120 YVR--PEVVEALVELGA  134 (183)
T ss_dssp             TTC--HHHHHHHHHHTC
T ss_pred             cCc--HHHHHHHHHcCC
Confidence            998  899999999875

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.68  E-value=8.6e-17  Score=151.75  Aligned_cols=98  Identities=20%  Similarity=0.418  Sum_probs=68.1

Q ss_pred             eeEEEEEEee---------cCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccC
Q 006616           99 TIRQGYLSKR---------SSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH  169 (638)
Q Consensus        99 ~~k~GyL~Kr---------~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~  169 (638)
                      ++|+|||+|+         .+...+.|++|||||+ ++.|+||+......                              
T Consensus         3 v~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~-~~~L~yyk~~~~~~------------------------------   51 (168)
T 2j59_M            3 AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLR-GHSLYLYKDKREQT------------------------------   51 (168)
T ss_dssp             CCEEEEEEEEECC------------CCEEEEEEEE-TTEEEEESCTTCC-------------------------------
T ss_pred             CcEEEEEeeeeecccCCcccCCCCCCceEEEEEEe-CCEEEEEECCcccc------------------------------
Confidence            5699999943         2345678999999998 67788887653210                              


Q ss_pred             CCCCCccccccce--eecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          170 GGVHDEKSAARHT--VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       170 ~~~~~~~~~~~~~--i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                             ..+.+.  |++..|.+.+..++..++|||+|++++++|+|+|+|++|+++||.+|+.++.
T Consensus        52 -------~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           52 -------TPSEEEQPISVNACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             --------------CEECSSCEEEECSSSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             -------cccCCceEecccceEEEeccccCCCCCEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence                   001112  3344465554445557889999999999999999999999999999998863

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.67  E-value=9e-17  Score=157.99  Aligned_cols=95  Identities=20%  Similarity=0.255  Sum_probs=91.4

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCCccCCCCCHHHHHH
Q 006616          542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAVNREGKTSLELAV  620 (638)
Q Consensus       542 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~-gad~~~~d~~g~TpL~~A~  620 (638)
                      .+..|.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++ |++++.+|..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            356799999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HcCCCcHHHHHHHhhCCC
Q 006616          621 ESNFADSEVLAILSDSHG  638 (638)
Q Consensus       621 ~~g~~d~eiv~lLle~ga  638 (638)
                      ..|+  .++|++|+++||
T Consensus       149 ~~~~--~~~v~~Ll~~ga  164 (222)
T 3ehr_A          149 WKGY--ADIVQLLLAKGA  164 (222)
T ss_dssp             HHTC--HHHHHHHHHHTC
T ss_pred             HcCC--HHHHHHHHHcCC
Confidence            9998  899999999885

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.66  E-value=2.3e-17  Score=158.36  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=88.4

Q ss_pred             CCcCC-CCCCcHHHHHHHhCCH----HHHHHHHHcCCCCcccCCCCCcHHHHHHHhCC------HHHHHHHHhCCCCCCC
Q 006616          539 QTMDD-LEGCTLLHLACDSADI----GMLELLLQYGANINATDSRGLTPLHRCILRGK------AMFAKLLLTRGADPRA  607 (638)
Q Consensus       539 ~~~~d-~~G~TpLh~Aa~~g~~----~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~------~~~v~lLl~~gad~~~  607 (638)
                      ++..+ ..|+||||+|+..|+.    +++++||++|+++|.+|..|+||||+|+..++      .+++++||++||+++.
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~  109 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA  109 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence            34444 6799999999999975    59999999999999999999999999999987      6889999999999999


Q ss_pred             ccCCCC-CHHHHHHHcCCCc---HHHHHHHhh-CCC
Q 006616          608 VNREGK-TSLELAVESNFAD---SEVLAILSD-SHG  638 (638)
Q Consensus       608 ~d~~g~-TpL~~A~~~g~~d---~eiv~lLle-~ga  638 (638)
                      +|..|. ||||+|+..+..+   .+++++|++ +||
T Consensus       110 ~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga  145 (186)
T 3t8k_A          110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL  145 (186)
T ss_dssp             CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred             cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence            999999 9999999966422   469999999 775

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.66  E-value=1.5e-16  Score=141.85  Aligned_cols=104  Identities=14%  Similarity=0.344  Sum_probs=75.1

Q ss_pred             ceeEEEEEEeecC----C---CCCCceeeEEEEecCceEEEEecCCCC-CCCCCCccccccCcCcccCCccccccccccC
Q 006616           98 QTIRQGYLSKRSS----N---LRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYH  169 (638)
Q Consensus        98 ~~~k~GyL~Kr~~----~---~~~~WkrRwfvL~~~~~l~y~~~~~~~-~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~  169 (638)
                      .+.|+|||.|+..    +   .++.|++|||||+ ++.|+||+.+... +.+.                           
T Consensus         7 ~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~-~~~L~~yk~~~~~~~~~~---------------------------   58 (122)
T 1dro_A            7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAK-AGRISFYKDQKGYKSNPE---------------------------   58 (122)
T ss_dssp             SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEES-SSCCBEESSSSHHHHCTT---------------------------
T ss_pred             ceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEE-CCEEEEEeCCcccccCCC---------------------------
Confidence            3569999998742    1   3578999999998 4566667665321 1000                           


Q ss_pred             CCCCCccccccceeecccceeecCCCCCCCcceEEEec-CCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          170 GGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       170 ~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t-~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                           ....+...|+|..|.+.+..+...|+|||+|++ +.++|+|||+|++||++||.+|+.+|.
T Consensus        59 -----~~~~~~~~i~L~~~~v~~~~d~~kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~  119 (122)
T 1dro_A           59 -----LTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             -----CCSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             -----cccCCCceEECCCCEEEeCCCCCCCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence                 000112457788887776555557899999997 458999999999999999999999885

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.66  E-value=6.7e-17  Score=161.86  Aligned_cols=92  Identities=29%  Similarity=0.260  Sum_probs=88.7

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc-CCCCCHHHHHHHc
Q 006616          544 LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLELAVES  622 (638)
Q Consensus       544 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d-~~g~TpL~~A~~~  622 (638)
                      ..|.||||+||..|+.+++++|++ |+++|.+|..|+||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            468999999999999999999999 99999999999999999999999999999999999999998 8899999999999


Q ss_pred             CCCcHHHHHHHhhCCC
Q 006616          623 NFADSEVLAILSDSHG  638 (638)
Q Consensus       623 g~~d~eiv~lLle~ga  638 (638)
                      |+  .++|++|+++|+
T Consensus       122 g~--~~~v~~Ll~~ga  135 (244)
T 3ui2_A          122 VR--PEVVEALVELGA  135 (244)
T ss_dssp             TC--HHHHHHHHHTTC
T ss_pred             CC--HHHHHHHHHCCC
Confidence            98  899999999986

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.65  E-value=6.9e-16  Score=155.63  Aligned_cols=108  Identities=23%  Similarity=0.390  Sum_probs=79.6

Q ss_pred             cceeEEEEEE-------eecCCC----CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccc
Q 006616           97 VQTIRQGYLS-------KRSSNL----RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLS  165 (638)
Q Consensus        97 ~~~~k~GyL~-------Kr~~~~----~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~  165 (638)
                      ..++|+|||+       ++.+..    ++.|++|||||++ +.|+||+.+.....                         
T Consensus         9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~-~~L~yyK~~~~~~~-------------------------   62 (263)
T 3a8p_A            9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKG-CTLLFYETYGKNST-------------------------   62 (263)
T ss_dssp             -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEET-TEEEEESSCCC----------------------------
T ss_pred             CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcC-CEEEEEecCccccc-------------------------
Confidence            4578999999       233444    7899999999984 57777776421000                         


Q ss_pred             cccCCCCCCccccccceeecccceeecCCCCCCCcceEEEec-CCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          166 SHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIIS-PTKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t-~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                              +....+.+.|+|..|.+....+...++|||+|++ +.++|+|||+|++|+++||.+|+.++.....
T Consensus        63 --------~~~~~p~g~I~L~~~~v~~~~~~~kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~~  128 (263)
T 3a8p_A           63 --------EQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFA  128 (263)
T ss_dssp             -----------CCCSEEEECTTCEEEECTTCSSCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------ccccCccceEEcCCcEEEECCcCCCCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhccc
Confidence                    0112345568888888875455556899999999 4689999999999999999999999987653

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=135.62  Aligned_cols=110  Identities=20%  Similarity=0.318  Sum_probs=76.0

Q ss_pred             cceeEEEEEEeec-----CC-CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCC
Q 006616           97 VQTIRQGYLSKRS-----SN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG  170 (638)
Q Consensus        97 ~~~~k~GyL~Kr~-----~~-~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  170 (638)
                      ..+.|+|||+++.     .. ..+.|++|||||+ ++.|+||+.......+..                   +     . 
T Consensus         6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~-~~~L~~yKd~~~~~~~~~-------------------~-----~-   59 (124)
T 3pp2_A            6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLE-GGVLTFFKDSKTSAAGGL-------------------R-----Q-   59 (124)
T ss_dssp             ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEE-TTEEEEESCSBCC---CB-------------------C-----C-
T ss_pred             CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEE-CCEEEEEecCccccccCc-------------------c-----C-
Confidence            3467999999762     12 2358999999998 567777765433111100                   0     0 


Q ss_pred             CCCCccccccceeecccceeecCC-CCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          171 GVHDEKSAARHTVNLLTSTIKVDA-DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       171 ~~~~~~~~~~~~i~l~~~~v~~~~-~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      .  .....+...|+|..|.+...+ +...|+|+|+|.+++ ++|.|||+|++||.+||.+|+.+|.
T Consensus        60 ~--~~~~~~~~~i~L~~a~v~~~~~d~~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           60 P--SKFSTPEYTVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             G--GGGCSEEEEEECTTCEEEECCGGGCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             c--ccccCCcceEEcCCCEEEecccccCCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            0  000124456889888888754 556789999999876 7999999999999999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.61  E-value=5.8e-16  Score=130.41  Aligned_cols=87  Identities=32%  Similarity=0.395  Sum_probs=79.2

Q ss_pred             cccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHH
Q 006616          518 TGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKL  597 (638)
Q Consensus       518 ~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~l  597 (638)
                      +.+...+....+.+|+..|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus         7 ~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~   86 (93)
T 1n0q_A            7 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL   86 (93)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            33344455667778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCC
Q 006616          598 LLTRGAD  604 (638)
Q Consensus       598 Ll~~gad  604 (638)
                      |+++||+
T Consensus        87 Ll~~ga~   93 (93)
T 1n0q_A           87 LLEAGAY   93 (93)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999985

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.61  E-value=1.4e-15  Score=150.56  Aligned_cols=97  Identities=26%  Similarity=0.520  Sum_probs=77.4

Q ss_pred             CcceeEEEEEEeecCCC----CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCC
Q 006616           96 KVQTIRQGYLSKRSSNL----RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGG  171 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~----~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  171 (638)
                      ...++++|||+|+++..    ++.|+||||||. ++.|+||++...                                  
T Consensus        55 ~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~-~~~L~Yyk~~~~----------------------------------   99 (228)
T 3tfm_A           55 KQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLR-QSKLMYFENDSE----------------------------------   99 (228)
T ss_dssp             CCCSSEEEEEEECGGGCSSSCGGGCEEEEEEEC-SSEEEEESSTTC----------------------------------
T ss_pred             CCCcceEEEEEEECCCcCCcccCCceEEEEEEe-CCEEEEEeCCCC----------------------------------
Confidence            34578999999996542    378999999998 678888877532                                  


Q ss_pred             CCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          172 VHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       172 ~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                           ..+.+.|+|..|++..+  ..+++|||+|++++++|+|+|+|++|+++||.+|+.+|.
T Consensus       100 -----~~~~g~I~L~~~~~v~~--~~~k~~~F~I~t~~r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A          100 -----EKLKGTVEVRSAKEIID--NTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             -----CSEEEEEEGGGCSEEEE--ETTTTSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             -----cceeEEEEcCCCEEecc--CCCCCcEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence                 23445677877765432  225789999999999999999999999999999999986

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.60  E-value=1.4e-15  Score=153.24  Aligned_cols=101  Identities=22%  Similarity=0.370  Sum_probs=73.6

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCc------eEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccC
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRG------MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYH  169 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~------~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~  169 (638)
                      ...++|+|||+|+     +.||||||||++++      .|+||+++.+...                             
T Consensus         7 ~~~v~k~G~L~K~-----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~-----------------------------   52 (264)
T 1qqg_A            7 FSDVRKVGYLRKP-----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRH-----------------------------   52 (264)
T ss_dssp             --CEEEEEEEECT-----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHT-----------------------------
T ss_pred             CCCccEEEEEEEC-----CCCEeEEEEEECCCCCCCCCEEEEECCCccccc-----------------------------
Confidence            4567899999998     68999999999762      8999876532000                             


Q ss_pred             CCCCCccccccceeecccce-eecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          170 GGVHDEKSAARHTVNLLTST-IKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       170 ~~~~~~~~~~~~~i~l~~~~-v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                           ....+.+.|+|..|. |.... +..++|||.|++++|+|+|+|+|++|+++||.+|+.++...
T Consensus        53 -----~~~~p~g~I~L~~~~~V~~~~-~~~~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           53 -----KSSAPKRSIPLESCFNINKRA-DSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             -----TCSCCSEEEEGGGEEEEEEEC-CSSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred             -----cccCcceEEEeeceEEEEecc-CCCCCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence                 001234557777665 43322 34678999999999999999999999999999999988653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.60  E-value=3.3e-16  Score=137.20  Aligned_cols=100  Identities=27%  Similarity=0.341  Sum_probs=89.1

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      ++.+...+....+..|+..|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        13 L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~   92 (115)
T 2l6b_A           13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK   92 (115)
T ss_dssp             HHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHH
Confidence            33344445566777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHH
Q 006616          597 LLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL  616 (638)
                      +|+++|++++.++..|.||-
T Consensus        93 ~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           93 LLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTSSSHHHHSCCCC---
T ss_pred             HHHHcCCCCCcCCccccccc
Confidence            99999999999999999884

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.59  E-value=3.8e-15  Score=156.64  Aligned_cols=95  Identities=26%  Similarity=0.542  Sum_probs=76.6

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++++|||+|+++ ..+.|+||||||. ++.|+||+.+.+                                       .
T Consensus       212 ~~~k~G~L~K~g~-~~k~WkkRwFVL~-~~~L~Yyk~~~~---------------------------------------~  250 (347)
T 2r09_A          212 NPDREGWLLKLGG-RVKTWKRRWFILT-DNCLYYFEYTTD---------------------------------------K  250 (347)
T ss_dssp             CCCEEEEEEEECS-SSCCEEEEEEEEE-TTEEEEESSTTC---------------------------------------S
T ss_pred             ccccCCeeEecCC-CcccceeEEEEEc-CCEEEEEcCCCc---------------------------------------c
Confidence            3689999999955 4679999999998 678888876532                                       1


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecC----------------------CeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISP----------------------TKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~----------------------~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      .+.+.|.|..|+|... ++..++|||+|.++                      .++|+|+|+|++|+++||.+|+.+|.
T Consensus       251 ~p~G~I~L~~~~v~~~-~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~  328 (347)
T 2r09_A          251 EPRGIIPLENLSIREV-EDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  328 (347)
T ss_dssp             SCSEEEECTTCEEEEE-CCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEcCCeEEEEc-cCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence            2345578888877753 34478999999987                      37999999999999999999999885

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.59  E-value=5e-15  Score=157.67  Aligned_cols=98  Identities=16%  Similarity=0.410  Sum_probs=71.8

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ..++|+|||.|+++...+.||||||||+ ++.|+||+++.+ .+.|                                  
T Consensus       267 ~~~~k~G~L~K~g~~~~k~WKkRwFVL~-~~~L~YYk~~~d~~~~G----------------------------------  311 (386)
T 3lju_X          267 RNYLKEGYMEKTGPKQTEGFRKRWFTMD-DRRLMYFKDPLDAFARG----------------------------------  311 (386)
T ss_dssp             CCCSEEEEEEECCTTSCSCCEEEEEEEE-TTEEEEESSTTCSBCSE----------------------------------
T ss_pred             cccceeeeEEEECCCCCCCCcccEEEEE-CCEEEEEecCCCcccce----------------------------------
Confidence            4568999999996665589999999999 778888877543 2222                                  


Q ss_pred             cccccceeeccccee----ec-CCCCC-C--CcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTI----KV-DADQS-D--LRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v----~~-~~~~~-~--rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                            .|.|..+..    .. .+... +  ++|||+|++++|+|+|+|+|++|+++||.||+.+|..
T Consensus       312 ------~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~t~~rty~l~A~s~~e~~~Wi~aL~~~i~~  373 (386)
T 3lju_X          312 ------EVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDR  373 (386)
T ss_dssp             ------EEECCCGGGTCEEEESCCTTCCSCCSCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred             ------EEEeecceeeeeecccCCccccccCCCcEEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence                  333322211    11 11111 1  2699999999999999999999999999999999863

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.58  E-value=1.8e-14  Score=127.37  Aligned_cols=103  Identities=19%  Similarity=0.386  Sum_probs=76.2

Q ss_pred             eEEEEEEee-----cCC-CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616          100 IRQGYLSKR-----SSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus       100 ~k~GyL~Kr-----~~~-~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      .++|||.++     ++. .+++|+||||+|. +..||||..+.-.  +.                            .-.
T Consensus         2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~-g~~L~yf~~~~~~--~~----------------------------~~~   50 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLS-GATLLYYGAKSLR--GT----------------------------DRK   50 (126)
T ss_dssp             CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEE-TTEEEEEEBSSSC--CS----------------------------SGG
T ss_pred             ceeeeeeeeehhhcCCcccccCcccEEEEEe-CCEEEEEcccccc--cc----------------------------ccc
Confidence            368888853     443 3689999999999 5567777754211  00                            000


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEecC--CeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP--TKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~--~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      +.+..+...|.|..+.|. ..++..+++||+|.++  +.+|.|||+|++++.+||++|..+|.
T Consensus        51 ~~~~~P~~~i~L~g~~V~-~~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~  112 (126)
T 2dtc_A           51 HYKSTPGKKVSIVGWMVQ-LPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK  112 (126)
T ss_dssp             GBCSSCSEEEECTTCEEE-CCCCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCceEEeCCCEEE-ecCCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            222345667899999998 4677778999999987  47899999999999999999999875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.56  E-value=8.1e-17  Score=171.59  Aligned_cols=115  Identities=13%  Similarity=0.107  Sum_probs=77.0

Q ss_pred             cccCCcccccccccCCCCCC---CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCC---cccCCCCCcHHHHHHHhCCHH
Q 006616          520 NSSDRSSSGSLNLAGTSEGQ---TMDDLEGCTLLHLACDSADIGMLELLLQYGANI---NATDSRGLTPLHRCILRGKAM  593 (638)
Q Consensus       520 ~~~~~~~~~~~lL~~~~~~~---~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadv---n~~d~~G~TpLh~A~~~g~~~  593 (638)
                      +...+...++..|+..|+..   +..+..|.||||+||..|+.++|++|+++|+++   +..+.. +||||+|+..|+.+
T Consensus        99 Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~e  177 (376)
T 2aja_A           99 AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLH  177 (376)
T ss_dssp             HHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHH
Confidence            33344444555555555521   223345677888888888888888888888652   222222 78888888888888


Q ss_pred             HHHHHHhCCCCCCC--ccCCCCCHHHHHH-HcCCCcHHHHHHHhhCC
Q 006616          594 FAKLLLTRGADPRA--VNREGKTSLELAV-ESNFADSEVLAILSDSH  637 (638)
Q Consensus       594 ~v~lLl~~gad~~~--~d~~g~TpL~~A~-~~g~~d~eiv~lLle~g  637 (638)
                      +|++|+++|++++.  .|..|.||||+|+ ..|+  .++|++|+++|
T Consensus       178 iv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~--~eiv~~Ll~~g  222 (376)
T 2aja_A          178 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH--HNVINFLLDCP  222 (376)
T ss_dssp             HHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC--HHHHHHHTTSH
T ss_pred             HHHHHHHcCCccchhccCCCCCCHHHHHHHHCCC--HHHHHHHHhCC
Confidence            88888888888776  7777888888888 8877  77888887754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.55  E-value=1e-15  Score=158.38  Aligned_cols=95  Identities=19%  Similarity=0.070  Sum_probs=82.9

Q ss_pred             CcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCC
Q 006616          524 RSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA  603 (638)
Q Consensus       524 ~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~ga  603 (638)
                      +...++.+|+..|++++..|..|+||||+|+..|+.+++++||++|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       204 ~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga  283 (301)
T 2b0o_E          204 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA  283 (301)
T ss_dssp             TTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            45567778888999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCccCCCCCHHHHHHHcCC
Q 006616          604 DPRAVNREGKTSLELAVESNF  624 (638)
Q Consensus       604 d~~~~d~~g~TpL~~A~~~g~  624 (638)
                      +      .|.||||+|+..|+
T Consensus       284 ~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          284 G------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             H------TTSSCCC-------
T ss_pred             C------CCCChhHHHHhcCC
Confidence            6      58899999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.53  E-value=3.6e-17  Score=174.28  Aligned_cols=147  Identities=9%  Similarity=0.015  Sum_probs=114.1

Q ss_pred             cceecccccccchhhhhhhcccccCcc---ccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVN---AVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAG  534 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN---~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~  534 (638)
                      ..|+.|+..|+.+.| ++|++.|+...   ..+..+                       ..+++.+...+...++.+|+.
T Consensus        94 T~Lh~Aa~~G~~e~v-~~Ll~~ga~~~~~~~~~~~~-----------------------~tpL~~Aa~~G~~eiv~~Ll~  149 (376)
T 2aja_A           94 VICFVAAITGCSSAL-DTLCLLLTSDEIVKVIQAEN-----------------------YQAFRLAAENGHLHVLNRLCE  149 (376)
T ss_dssp             HHHHHHHHHCCHHHH-HHHTTC--CCSSCC--CHHH-----------------------HHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHH-HHHHHcCCcHHHHHHhccCC-----------------------CCHHHHHHHcCCHHHHHHHHh
Confidence            678899998887766 45558887221   111111                       114555566677778888888


Q ss_pred             CCCCC---CcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcc--cCCCCCcHHHHHH-HhCCHHHHHHHHhCCCCCCCc
Q 006616          535 TSEGQ---TMDDLEGCTLLHLACDSADIGMLELLLQYGANINA--TDSRGLTPLHRCI-LRGKAMFAKLLLTRGADPRAV  608 (638)
Q Consensus       535 ~~~~~---~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~--~d~~G~TpLh~A~-~~g~~~~v~lLl~~gad~~~~  608 (638)
                      .|+++   +..+.+ .||||+||..|+.++|++|+++|++++.  .|..|+||||+|+ ..|+.++|++|+++|++    
T Consensus       150 ~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~----  224 (376)
T 2aja_A          150 LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM----  224 (376)
T ss_dssp             SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----
T ss_pred             CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----
Confidence            88752   333333 9999999999999999999999999987  8889999999999 99999999999998753    


Q ss_pred             cCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          609 NREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       609 d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                         |.|||++|+..|+  .+++++|+++|+
T Consensus       225 ---~~taL~~Aa~~g~--~evv~lL~~~ga  249 (376)
T 2aja_A          225 ---LAYAEIHEFEYGE--KYVNPFIARHVN  249 (376)
T ss_dssp             ---HHHHHHCTTTTTT--TTHHHHHHHHHH
T ss_pred             ---cchHHHHHHHCCC--HHHHHHHHhcCc
Confidence               8899999999998  679999998763

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.52  E-value=2.2e-14  Score=152.22  Aligned_cols=96  Identities=19%  Similarity=0.269  Sum_probs=89.4

Q ss_pred             cCCCCCCcHHHHHHHh-CCHHHHHHHHHcCCCCcccC--CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          541 MDDLEGCTLLHLACDS-ADIGMLELLLQYGANINATD--SRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       541 ~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadvn~~d--~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      ..+..+.|+||+|+.. |+++++++||++|+++|..+  ..|+||||+|+..|+.++|++||++|++++.+|..|.||||
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            3445678999999999 99999999999999999998  88999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHhhCCC
Q 006616          618 LAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|+..|+  .++|++|+++||
T Consensus       274 ~A~~~g~--~~~v~~LL~~Ga  292 (368)
T 3jue_A          274 HATILGH--TGLACLFLKRGA  292 (368)
T ss_dssp             HHHHHTC--HHHHHHHHHTTC
T ss_pred             HHHHcCc--HHHHHHHHHCcC
Confidence            9999998  899999999986

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.51  E-value=2.8e-14  Score=146.64  Aligned_cols=101  Identities=20%  Similarity=0.314  Sum_probs=68.9

Q ss_pred             CCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616           94 KGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV  172 (638)
Q Consensus        94 ~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  172 (638)
                      .....|.++|||+|++++ .++|+||||||+ ++.||||++... .+.|.+.                            
T Consensus       163 ~~~~~p~~~G~L~k~~~~-~k~WkkR~fvL~-~~~L~yyk~~~~~~~~~~i~----------------------------  212 (291)
T 3tca_A          163 TSIIVPELEGALYLKEDG-KKSWKRRYFLLR-ASGIYYVPKGKTKTSRDLAC----------------------------  212 (291)
T ss_dssp             SSCCCCCCEEEEEEECTT-SSCEEEEEEEEC-SSEEEECCTTCCSSTTTCEE----------------------------
T ss_pred             cCCCCCceEEEEEEeCCC-CCCceEEEEEEe-CCEEEEEecCccccccCcee----------------------------
Confidence            344567899999999654 678999999998 456677765433 2222110                            


Q ss_pred             CCccccccceeecccceeecCC-----CCCCCcceEEEecCC------eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          173 HDEKSAARHTVNLLTSTIKVDA-----DQSDLRFCFRIISPT------KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       173 ~~~~~~~~~~i~l~~~~v~~~~-----~~~~rr~cF~I~t~~------rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                               -+++..+.|....     ...+++|||.|++++      ++|+|+|+|++|+..||.||+.|.
T Consensus       213 ---------l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          213 ---------FIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             ---------EEEGGGCEEEEECSHHHHHCCSSSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ---------eccceeEEEEecCccccccCCCCCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence                     1222223222111     123568999999875      469999999999999999999775

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.49  E-value=3.5e-13  Score=121.27  Aligned_cols=127  Identities=22%  Similarity=0.406  Sum_probs=78.7

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccc--cccCCCCC----
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLS--SHYHGGVH----  173 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~----  173 (638)
                      +|+|||+|+. ...+.|++|||||. +..|||+...... .+...-.     ....+..-...++.  --+|+...    
T Consensus         2 ~k~G~L~~~~-~~~~~w~~~~fvL~-~~~L~y~~e~s~~-~~~~~~e-----~~~~~~~~~~~~~~~n~~fh~~~~~~~e   73 (150)
T 2fjl_A            2 IKNGILYLED-PVNHEWYPHYFVLT-SSKIYYSEETSSD-QGNEDEE-----EPKEASGSTELHSSLEVLFQGPNPAILE   73 (150)
T ss_dssp             CEEEEEEEEE-TTTTEEEEEEEEEE-TTEEEECCCCSCS-SCCSCCC-----CSCCCCCSCCCCCCSSSGGGSSCSTTSC
T ss_pred             CcceEEEeec-CCCCCceEeEEEEE-CCEEEEEeecccc-ccccCcc-----cccccCCchhhcccchhccccCCccccc
Confidence            5899999995 56789999999999 6778877532210 0000000     00000000000000  00011100    


Q ss_pred             -------C---ccccccceeecccceeecCCC-CCCCcceEEEecCC---eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          174 -------D---EKSAARHTVNLLTSTIKVDAD-QSDLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       174 -------~---~~~~~~~~i~l~~~~v~~~~~-~~~rr~cF~I~t~~---rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                             +   -.....+.|+|..|+|...++ ..+++|+|+|.+++   ++|.|.|+|.+||.+||++|+.++.
T Consensus        74 ~~~~~l~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~  148 (150)
T 2fjl_A           74 PEREHLDENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ  148 (150)
T ss_dssp             TTCSSSCTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             hhHhcccccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence                   0   012235779999999986443 34688999999985   5999999999999999999999875

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=3.8e-13  Score=118.68  Aligned_cols=98  Identities=15%  Similarity=0.289  Sum_probs=75.5

Q ss_pred             cceeEEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           97 VQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      ..|..++||.++...  ..++||||||+|. +..|+||+++.+..                                   
T Consensus         7 ~~pel~~~l~~~~pkk~tlK~~KrrWFvlk-~~~L~YyK~kee~~-----------------------------------   50 (137)
T 2ys3_A            7 GIPELKDHLRIFRPRKLTLKGYRQHWVVFK-ETTLSYYKSQDEAP-----------------------------------   50 (137)
T ss_dssp             SCCCEECCCEECCTTSCCSSSSCCCEEEEC-SSCEEEESSTTTTT-----------------------------------
T ss_pred             CCcchhHHHHhhCccccccccceeEEEEEe-CCEEEEECCchhcc-----------------------------------
Confidence            346789999988654  4568999999998 66888887765410                                   


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecCC----eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT----KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~----rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                        ..+.+.|+|..|.|.++......+|+|.+..|.    ++|.|.|+|++++.+||.|++-+
T Consensus        51 --~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlA  110 (137)
T 2ys3_A           51 --GDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLA  110 (137)
T ss_dssp             --SCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             --CCCceEEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHh
Confidence              123345889999988764334668999888774    89999999999999999999854

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.43  E-value=4.3e-13  Score=136.94  Aligned_cols=91  Identities=18%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCc------ccCCCCCcHHHHHHHh---CCHHHHHHHHhCCCCCCCccCCCCCHH
Q 006616          546 GCTLLHLACDSADIGMLELLLQYGANIN------ATDSRGLTPLHRCILR---GKAMFAKLLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn------~~d~~G~TpLh~A~~~---g~~~~v~lLl~~gad~~~~d~~g~TpL  616 (638)
                      ..++|+.|+..|+.+.+..|+..|++++      ..|..|+||||+|+..   |+.+++++|+++|++++.+|..|.|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            4579999999999999999999999954      4588999999999999   899999999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHhhCCC
Q 006616          617 ELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |+|+..|+  .++|++|+++||
T Consensus       210 h~A~~~g~--~~~v~~Ll~~ga  229 (278)
T 1dcq_A          210 HYCCLTDN--AECLKLLLRGKA  229 (278)
T ss_dssp             HHHHHTTC--HHHHHHHHHTTC
T ss_pred             HHHHHcCC--HHHHHHHHHcCC
Confidence            99999998  899999999986

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.38  E-value=9.7e-13  Score=115.71  Aligned_cols=97  Identities=21%  Similarity=0.431  Sum_probs=63.4

Q ss_pred             EEEEEEe-ecCCCCC-CceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616          101 RQGYLSK-RSSNLRG-DWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus       101 k~GyL~K-r~~~~~~-~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .+|||.+ +.++.++ +|+||||||. ++.|+||+.+..+.                                    ...
T Consensus         3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~-~~kL~~y~~~~~~~------------------------------------~~~   45 (117)
T 2rov_A            3 LEGWLSLPVRNNTKKFGWVKKYVIVS-SKKILFYDSEQDKE------------------------------------QSN   45 (117)
T ss_dssp             SEEEEECCCCSSSSCCCCCEEEEEEE-TTEEEEESCHHHHH------------------------------------TTC
T ss_pred             eEEEEEeecCCCccCCCcEEEEEEEE-CCEEEEEECCCCcc------------------------------------cCC
Confidence            4899996 2245677 8999999998 56677776542100                                    001


Q ss_pred             ccceeecccce----ee----cCCCCCCCcceEEEecC------CeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTST----IK----VDADQSDLRFCFRIISP------TKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       179 ~~~~i~l~~~~----v~----~~~~~~~rr~cF~I~t~------~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      +...|+|..+.    |.    +.....+.++.|+|+.+      .++++|.|+|++|+++||.+|+.+|.
T Consensus        46 p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           46 PYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             CSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             ceEEEECcccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            11223332111    11    11223345789999863      58999999999999999999998764

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=4.8e-12  Score=109.32  Aligned_cols=101  Identities=19%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             cceeEEEEEEeecC-CCCCCceeeEEEEecCc-----eEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCC
Q 006616           97 VQTIRQGYLSKRSS-NLRGDWKRRFFVLDSRG-----MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG  170 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~-~~~~~WkrRwfvL~~~~-----~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  170 (638)
                      ..++|+||||++.. ...+.|+||||||..+.     .|-||..+++...|                             
T Consensus        10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~-----------------------------   60 (127)
T 2d9w_A           10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRC-----------------------------   60 (127)
T ss_dssp             CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSC-----------------------------
T ss_pred             CccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccC-----------------------------
Confidence            45679999999975 44556999999997632     57777766442111                             


Q ss_pred             CCCCccccccceeecccce-eecCCCC---CCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          171 GVHDEKSAARHTVNLLTST-IKVDADQ---SDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       171 ~~~~~~~~~~~~i~l~~~~-v~~~~~~---~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                            ..++..|.|..|. |.+...+   +...++|.|.|++|+|+|.|+++ |+.+||.+|....
T Consensus        61 ------~~~rrVIrLsdCisV~~~~~e~~~pk~~~aF~l~T~er~~~laAe~~-E~~~Wi~~ic~~a  120 (127)
T 2d9w_A           61 ------EAARKVIRLSDCLRVAEAGGEASSPRDTSAFFLETKERLYLLAAPAA-ERGDWVQAICLLA  120 (127)
T ss_dssp             ------SCCEEEECGGGEEEEEECCSCSSSCSSCEEEEEEESSCEEEEEECHH-HHHHHHHHHHHHH
T ss_pred             ------CCCceEEEhhhCCeEecccCccCCCCcceEEEEEeCCcEEEEEeCcH-HHHHHHHHHHHHh
Confidence                  1233457777664 3322222   13358999999999999999975 8999999998653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.36  E-value=5.5e-13  Score=115.90  Aligned_cols=81  Identities=26%  Similarity=0.350  Sum_probs=72.8

Q ss_pred             cccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHH
Q 006616          518 TGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKL  597 (638)
Q Consensus       518 ~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~l  597 (638)
                      +.+...+....+..|+..|++++..|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus        29 ~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~  108 (110)
T 2zgd_A           29 LEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI  108 (110)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHH
Confidence            33444455566777888899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             H
Q 006616          598 L  598 (638)
Q Consensus       598 L  598 (638)
                      |
T Consensus       109 L  109 (110)
T 2zgd_A          109 L  109 (110)
T ss_dssp             H
T ss_pred             h
Confidence            7

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.33  E-value=1.8e-12  Score=130.24  Aligned_cols=107  Identities=20%  Similarity=0.381  Sum_probs=76.5

Q ss_pred             cceeEEEEEEee-----cC------CCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccc
Q 006616           97 VQTIRQGYLSKR-----SS------NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLS  165 (638)
Q Consensus        97 ~~~~k~GyL~Kr-----~~------~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~  165 (638)
                      ..+.|+|||.++     .+      ...+.|++|||||. ++.||||+.......                         
T Consensus         9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLk-g~~L~fYKde~~~~~-------------------------   62 (279)
T 3a8n_A            9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLK-GCTLFFYETDGRSGI-------------------------   62 (279)
T ss_dssp             -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEE-TTEECCBCCC------------------------------
T ss_pred             CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEe-CCEEEEEeccccccc-------------------------
Confidence            345699999753     11      13568999999998 677777776532110                         


Q ss_pred             cccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          166 SHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                              +....+...|.|..|++...++...++|+|.|.+++ ++|.|||+|++||++||.+|+.++....
T Consensus        63 --------~~~~~p~~~I~L~ga~v~~a~d~~kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~~~  127 (279)
T 3a8n_A           63 --------DHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAV  127 (279)
T ss_dssp             -----------CCCSSCCBCCSCEECCCTTSSSSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------ccccCCCceEeccCcEEEeccccCCCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhhhc
Confidence                    111223445788888888656666789999999765 7899999999999999999999987543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.23  E-value=1e-11  Score=135.31  Aligned_cols=101  Identities=18%  Similarity=0.365  Sum_probs=68.9

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      .++|+|||.|++ ...++||||||+|++++.|+||+.+.. .+.|.+                                 
T Consensus         5 ~v~keG~L~K~g-~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i---------------------------------   50 (446)
T 4ejn_A            5 AIVKEGWLHKRG-EYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREA---------------------------------   50 (446)
T ss_dssp             CEEEEEEEEEEE-TTTTEEEEEEEEEETTSBEEEESSCC-------C---------------------------------
T ss_pred             eEEEEeeEEeec-cccccccceEEEEeeCCEEEEEecCCCCCccCcc---------------------------------
Confidence            478999999994 456799999999987777777776543 222221                                 


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCCe-eE---EEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK-NY---TLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~r-t~---~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                        +...+.+..|.+...  +..+++||.|.+++. ++   .|++++++++++|+.||+.+|..+
T Consensus        51 --~l~~~~~~~~~~~~~--~~~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~~  110 (446)
T 4ejn_A           51 --PLNNFSVAQCQLMKT--ERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL  110 (446)
T ss_dssp             --CCGGGBCTTCEEEEE--CSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCCC-
T ss_pred             --cccCccccceeecCC--CCCCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhhhh
Confidence              111223334454322  235679999998763 33   799999999999999999987543

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.21  E-value=3.5e-11  Score=120.94  Aligned_cols=99  Identities=16%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..|.++|||+++..+ .+.|+||||+|+.+|++||.+.....+.+.                 .                
T Consensus       156 ~~pe~~G~L~~k~~~-~k~WkkRyfvLr~sgLyy~~K~~sk~~r~l-----------------~----------------  201 (281)
T 4gmv_A          156 TVPEIEGVLWLKDDG-KKSWKKRYFLLRASGIYYVPKGKAKVSRDL-----------------V----------------  201 (281)
T ss_dssp             CCCCCEEEEEEECTT-SSCEEEEEEEECSSCEEEC---------CC-----------------E----------------
T ss_pred             CCCccEEEEEEECCC-CCCCeEEEEEEeCCEEEEEeCCCCCccccc-----------------e----------------
Confidence            456789999999553 578999999999777654433322111110                 0                


Q ss_pred             ccccceeecccceeecCC-----CCCCCcceEEEecCC------eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDA-----DQSDLRFCFRIISPT------KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~-----~~~~rr~cF~I~t~~------rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                          .-+.|..+.|-...     -....+|||.|.++.      ..++|+|++++++..||.||+-+.
T Consensus       202 ----~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak  265 (281)
T 4gmv_A          202 ----CFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAK  265 (281)
T ss_dssp             ----EEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ----EEEEcCCcEEEEecccccccCCCCCcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence                00123232222110     123458999999764      469999999999999999999876

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.21  E-value=3.3e-11  Score=119.76  Aligned_cols=101  Identities=19%  Similarity=0.232  Sum_probs=66.2

Q ss_pred             CCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      ....|.++|||+++..+ .+.|+||||+|+.+|+ ||+++...+..+                ++               
T Consensus       128 ~s~~P~~~G~L~~ke~~-~K~WkkRyfvLr~sgL-y~~~k~~sk~~r----------------~l---------------  174 (256)
T 3hk0_A          128 SSSSPEIQGFLHVKELG-KKSWKKLYVCLRRSGL-YCSTKGTSAAPR----------------HL---------------  174 (256)
T ss_dssp             TTSCEEEEEEEEEECTT-SSCEEEEEEEEETTEE-EEESSTTCCCGG----------------GE---------------
T ss_pred             CCCCCcceeEEEEecCC-CCcceEEEEEEeCCEE-EEEecCCCCccc----------------cc---------------
Confidence            34567899999999554 6789999999997765 555554321110                00               


Q ss_pred             ccccccceeecccceeecCC-----CCCCCcceEEEecCCe------eEEEEeCCHHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDA-----DQSDLRFCFRIISPTK------NYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~-----~~~~rr~cF~I~t~~r------t~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                           ..-++|....|-...     -....+|||.|..+..      .++|+|++++++..||.||+.+.
T Consensus       175 -----~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak  239 (256)
T 3hk0_A          175 -----QLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLK  239 (256)
T ss_dssp             -----EEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             -----eEEEEcCCCEEEEecccccccCCCCCCEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHH
Confidence                 000122222222111     0123479999997643      59999999999999999999887

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=99.09  E-value=3.4e-10  Score=101.72  Aligned_cols=94  Identities=20%  Similarity=0.251  Sum_probs=70.0

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++|+|||.||.+ .  .|++|||+|.+...|||.......                                      
T Consensus        50 e~Ilk~G~v~KrkG-l--~~kkR~liLT~~PrL~Yvdp~~~~--------------------------------------   88 (151)
T 1w1g_A           50 NLILKMGPVDKRKG-L--FARRRQLLLTEGPHLYYVDPVNKV--------------------------------------   88 (151)
T ss_dssp             CCEEEEEEEEEEET-T--EEEEEEEEEETTTEEEEEETTTTE--------------------------------------
T ss_pred             CcEEEEEEEEeccc-C--cceeEEEEEcCCceEEEEcCcccc--------------------------------------
Confidence            46799999999855 2  499999999977777776654332                                      


Q ss_pred             ccccceeeccc-ceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          177 SAARHTVNLLT-STIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       177 ~~~~~~i~l~~-~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                        ..+.|.+.. +.|.+..     ..+|.|.+|+|+|+|.+. ..++++|++||+.++...+..
T Consensus        89 --~KGeIpls~~l~ve~k~-----~~~F~I~Tp~RtY~~~d~-~~~AqeWv~aI~~~~~~~~~~  144 (151)
T 1w1g_A           89 --LKGEIPWSQELRPEAKN-----FKTFFVHTPNRTYYLMDP-SGNAHKWCRKIQEVWRQRYQS  144 (151)
T ss_dssp             --EEEEECCCTTCEEEESS-----SSEEEEEETTEEEEEECT-TSCHHHHHHHHHHHHHHHHCC
T ss_pred             --ccceEecCCCeeEEEcC-----CCEEEEECCCceEEEEcC-ccCHHHHHHHHHHHHHHHhcc
Confidence              223344433 3344322     238999999999999997 889999999999999776654

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.02  E-value=1e-09  Score=97.90  Aligned_cols=99  Identities=15%  Similarity=0.251  Sum_probs=72.0

Q ss_pred             CcceeEEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           96 KVQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ...|...+||......  ..|.||+||||++ ++.|+||+++++.                                   
T Consensus        23 t~iPeL~dyLk~~~pkrltLKgfKryWfv~k-Dt~LsyYKSkEe~-----------------------------------   66 (165)
T 4bbk_A           23 TDIPKLADYLKLFRPKKLMLKACKQYWFVFK-DTSIAYFKNKELE-----------------------------------   66 (165)
T ss_dssp             ---CCEEEEEEEEC-------CCEEEEEEEE-TTEEEEESSGGGT-----------------------------------
T ss_pred             ccChhhHhHHHhhcccccccccceeEEEEEe-CCEEEEEcCHHHh-----------------------------------
Confidence            3456678999764332  4579999999998 7889999987542                                   


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEecC---C-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP---T-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~---~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                        ...+.+.|+|..|.|.++..-...+|+|+|..|   . ..+.|.|++|.++.+||.|.+-+
T Consensus        67 --~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLA  127 (165)
T 4bbk_A           67 --QGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILA  127 (165)
T ss_dssp             --TSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             --cCCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeecCCHHHHHHHHHHhhhc
Confidence              123456799999999975444456899998766   2 47899999999999999998754

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.02  E-value=1.2e-09  Score=98.69  Aligned_cols=98  Identities=12%  Similarity=0.242  Sum_probs=74.8

Q ss_pred             cceeEEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           97 VQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      ..|...+||......  ..|.||+||||++ ++.|+||+++++.                                    
T Consensus        45 ~iPeL~dyLk~~~pk~~tLKgyKryWFv~k-d~~LsyYKskEe~------------------------------------   87 (173)
T 4f7h_A           45 SIPELADYIKVFKPKKLTLKGYKQYWCTFK-DTSISCYKSKEES------------------------------------   87 (173)
T ss_dssp             GTTCEEEEEEEECCBTTBCCCCEEEEEEEE-TTEEEEESCGGGC------------------------------------
T ss_pred             cChhhHhHHHhhcchhcccccceeEEEEEe-CCEEEEEcCHhHh------------------------------------
Confidence            345678999754332  4589999999998 7889999887541                                    


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecC---C-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP---T-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~---~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                       ...+.+.|+|..|.|.++......+|+|.+..|   + ..+.|.|+++.++.+||.|.+-+
T Consensus        88 -~geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLA  148 (173)
T 4f7h_A           88 -SGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLA  148 (173)
T ss_dssp             -SSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             -cCCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHHHHHHHHhhhh
Confidence             123456799999999976444456788888765   2 57999999999999999998754

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.96  E-value=5.3e-09  Score=113.45  Aligned_cols=99  Identities=15%  Similarity=0.290  Sum_probs=65.4

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ..+++|.|.+.++   +.++.|||+|-++-+++...+...                                      ..
T Consensus       243 ~li~~g~l~~~~~---~~~~~r~~fLF~d~Ll~~k~~~~~--------------------------------------~y  281 (434)
T 3mpx_A          243 EFLKEGTLMKVTG---KNRRPRHLFLMNDVLLYTYPQKDG--------------------------------------KY  281 (434)
T ss_dssp             CEEECCEEEEEET---TEEEEEEEEEESSEEEEEEECTTS--------------------------------------CE
T ss_pred             ceEecceEEEEeC---CCceEEEEEEECCEEEEEEecCCC--------------------------------------eE
Confidence            4579999998754   358899999997766665433211                                      12


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                      .....|.|....|.. .++.+.+|+|.|.++.++|+|+|.|++|++.||++|+.+|.....
T Consensus       282 ~~k~~i~L~~l~v~~-~~~~~~~~~f~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~e~~~  341 (434)
T 3mpx_A          282 RLKNTLAVANMKVSR-PVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYK  341 (434)
T ss_dssp             EEEEEEEC-----CC-CCCTTSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHC------
T ss_pred             EEEEEEEcCCcEEEe-cCCCCCCeeEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHHHh
Confidence            223446666555543 233356899999999999999999999999999999999976543

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.88  E-value=5.3e-09  Score=90.28  Aligned_cols=101  Identities=16%  Similarity=0.267  Sum_probs=62.9

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCC-CCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      ...++|+||+.+. .+..+.|||||++|+. .-+.||++.. .++-.                                 
T Consensus         5 ~s~vlkeGW~VH~-t~~d~~rKRHYWrLD~-K~Itlf~~e~~~~~yk---------------------------------   49 (125)
T 2coa_A            5 SSGTLREGWVVHY-SNKDTLRKRHYWRLDC-KCITLFQNNTTNRYYK---------------------------------   49 (125)
T ss_dssp             CCSCSEEEEEEEC-CSSSCCCEEEEEEECS-SEEEEESSSSCSSCSE---------------------------------
T ss_pred             CCceeecceEEEE-ccCCccccceeeEecC-CeEEEEecCCCCceee---------------------------------
Confidence            4567899999999 4457789999999985 4555555432 21110                                 


Q ss_pred             cccccc-ceeecccceeecCCCCCCCcceEEEecCCeeEEEEeC---C--------HHHHHHHHHHHHHHH
Q 006616          175 EKSAAR-HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAE---S--------ALDQMDWIEKITGVI  233 (638)
Q Consensus       175 ~~~~~~-~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~---s--------e~e~~~Wi~ai~~~i  233 (638)
                        .++. +-+.+..|..........+.+||+|+|.+.+|+.+++   .        .+.++.|..||++|+
T Consensus        50 --eIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL  118 (125)
T 2coa_A           50 --EIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  118 (125)
T ss_dssp             --EEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             --eeehhHeecccccccccccCCCCCCceEEEEeCCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence              1111 1122222221110012235699999999999999974   1        256999999999875

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=2.6e-08  Score=86.21  Aligned_cols=103  Identities=17%  Similarity=0.272  Sum_probs=64.2

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...++|+||+.+.+. ..+.|||+|++|+...+.+|......+.-.                                  
T Consensus         5 ~s~vlkeGWmVH~t~-~d~~rKRHYWrLD~K~Itlf~~e~~~k~yk----------------------------------   49 (129)
T 2d9z_A            5 SSGMVKEGWMVHYTS-RDNLRKRHYWRLDSKCLTLFQNESGSKYYK----------------------------------   49 (129)
T ss_dssp             CTTSEEEEEEEEEES-SCCCCEEEEEEEESSCEEEESCSSCCSCCC----------------------------------
T ss_pred             CCceeecceEEEEcc-CCccccceeeEecCCeEEEEecCCCCceec----------------------------------
Confidence            346789999999854 456899999999965554443332222111                                  


Q ss_pred             ccccc-ceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCC---------------HHHHHHHHHHHHHHHH
Q 006616          176 KSAAR-HTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES---------------ALDQMDWIEKITGVIA  234 (638)
Q Consensus       176 ~~~~~-~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~s---------------e~e~~~Wi~ai~~~i~  234 (638)
                       .++. +-+.+..+...........++||+|+|.+.+|+.+++.               .+.++.|..||++|+.
T Consensus        50 -eIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm  123 (129)
T 2d9z_A           50 -EIPLSEILRISSPRDFTNISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM  123 (129)
T ss_dssp             -EECTTTCCEECCTTCCCCSSSCSCCCSEEEECSSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred             -eeeHHHhcccccccCccccCCCCCCceEEEEECCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence             1111 11122221111000112346999999999999998853               6899999999999874

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.59  E-value=6.2e-07  Score=77.88  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .+++|.|.+-.....+.=+++||+|-++.++|-..+....                   |                 +..
T Consensus         8 lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~-------------------~-----------------~~~   51 (113)
T 1zc3_B            8 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRR-------------------G-----------------MYR   51 (113)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTT-------------------S-----------------CEE
T ss_pred             EEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCc-------------------c-----------------cEE
Confidence            5789999987443222224579999988888766543210                   0                 001


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                      ....+.|....|.-.++....+++|.|.++.+++.|+|+|++|..+||.+|+.+|..++.
T Consensus        52 ~~~~~~L~~~~v~d~~d~~~~~n~f~i~~~~~s~~~~aes~~eK~~Wl~~~~~a~~~~~~  111 (113)
T 1zc3_B           52 YNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD  111 (113)
T ss_dssp             EEEEEETTTCEEEEECCBTTBSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEcccCEEEECCCCcccceEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHHhh
Confidence            111234433333322333456899999999999999999999999999999999977653

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=98.40  E-value=1.4e-05  Score=85.58  Aligned_cols=99  Identities=19%  Similarity=0.285  Sum_probs=66.7

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .+++|.|.+.... .+.++.||++|-++-+++...+ ..                                      ...
T Consensus       234 li~~G~l~~~~~~-~~~~~~~~~fLF~d~Ll~~k~k-~~--------------------------------------~y~  273 (406)
T 2vrw_B          234 PKIDGELKITSVE-RRSKTDRYAFLLDKALLICKRR-GD--------------------------------------SYD  273 (406)
T ss_dssp             EEEEEEEEEECSS-CCSCEEEEEEEESSEEEEEEEE-TT--------------------------------------EEE
T ss_pred             ccccccEEEEecC-CCccceEEEEecCCEEEEEEec-CC--------------------------------------ceE
Confidence            6799999887432 3468999999997766665433 11                                      111


Q ss_pred             ccceeecccceeecCCCCC----CCcceEEEec--CCeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          179 ARHTVNLLTSTIKVDADQS----DLRFCFRIIS--PTKNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~----~rr~cF~I~t--~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      ....|.|....|...++..    .-.+.|.|++  +.+.|+|+|.|+++++.||++|+.+|..+.
T Consensus       274 ~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~  338 (406)
T 2vrw_B          274 LKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIY  338 (406)
T ss_dssp             EEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEecccceeeeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence            2234555555554322211    2258999987  457899999999999999999999998654

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=98.26  E-value=3.5e-05  Score=86.50  Aligned_cols=99  Identities=19%  Similarity=0.260  Sum_probs=68.1

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .+++|.|.+... ..+.++.|||+|-++-+++..++ ..                                      ...
T Consensus       406 ll~~G~l~~~~~-~~~~~~~r~~fLF~d~Ll~~k~~-~~--------------------------------------~y~  445 (587)
T 3ky9_A          406 PKIDGELKITSV-ERRSKMDRYAFLLDKALLICKRR-GD--------------------------------------SYD  445 (587)
T ss_dssp             EEEEEEEEEECS-SCCSCEEEEEEEETTEEEEEEEE-TT--------------------------------------EEE
T ss_pred             eEEEeeEEEEec-cCCCcceEEEEEECCEEEEEEec-CC--------------------------------------EEE
Confidence            689999998743 34578999999997777665443 11                                      112


Q ss_pred             ccceeecccceeecCCCC----CCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          179 ARHTVNLLTSTIKVDADQ----SDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~----~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      ....|.|....|....+.    ..-+++|.|++..  ++|+|+|.|++|++.||++|+.+|....
T Consensus       446 ~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~  510 (587)
T 3ky9_A          446 LKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIY  510 (587)
T ss_dssp             EEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred             eeeeechhhceeeecCCCCcccccccceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence            234466666665532211    1235889999876  7999999999999999999999997654

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.06  E-value=1.4e-05  Score=70.91  Aligned_cols=56  Identities=11%  Similarity=0.245  Sum_probs=44.7

Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ..+.+.|....|....+..+.++||+|..+. +++.+.|.|.+|+++||.+|+.+|.
T Consensus        70 ~kgklPL~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~  126 (132)
T 1v61_A           70 YQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             EEEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred             EEEEEecceeEEEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            3455667666666433334678999999987 8999999999999999999999885

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.02  E-value=5.9e-05  Score=65.39  Aligned_cols=104  Identities=15%  Similarity=0.248  Sum_probs=67.6

Q ss_pred             CCcceeEEEEEEeecC-C------CCCCceeeEEEEecC-----ceEEEEecCCC-CCCCCCCccccccCcCcccCCccc
Q 006616           95 GKVQTIRQGYLSKRSS-N------LRGDWKRRFFVLDSR-----GMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLS  161 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~-~------~~~~WkrRwfvL~~~-----~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~  161 (638)
                      ..+..+|||.|.-..+ .      ....|.|+|++|...     .+|-||..+.. +|+.                +|+ 
T Consensus        14 ~~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~----------------~i~-   76 (136)
T 1v5m_A           14 ELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKV----------------SIP-   76 (136)
T ss_dssp             CSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSS----------------CEE-
T ss_pred             ccceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCcc----------------ccc-
Confidence            3456789998843322 1      235799999999874     45777765432 2221                111 


Q ss_pred             cccccccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCCe-eEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          162 RWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                         +              ..-..+..++..-   =+|+.+.|.|.+.++ .|+|+|.++.++.+|+..|+..+..
T Consensus        77 ---c--------------s~I~EVR~tt~LE---mPD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~~  131 (136)
T 1v5m_A           77 ---L--------------SAIIEVRTTMPLE---MPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDS  131 (136)
T ss_dssp             ---T--------------TTCCBCCCCCCSS---SCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ---h--------------hhhhhhhhccccc---cCCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence               0              0002233333321   235679999999886 8999999999999999999988754

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.01  E-value=4.9e-05  Score=67.54  Aligned_cols=58  Identities=14%  Similarity=0.186  Sum_probs=44.7

Q ss_pred             cceeecccceeecCCCCCCCcceEEEecCC------eeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          180 RHTVNLLTSTIKVDADQSDLRFCFRIISPT------KNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~------rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                      +..+.|....|... +...-+|+|.|.++.      ++++|+|.|+.||..||++|+.+|+....
T Consensus        63 r~~~~L~gm~V~~~-e~e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~e  126 (140)
T 3qwm_A           63 RQSFSLYGMQVLLF-ENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQE  126 (140)
T ss_dssp             EEEECCTTEEEEEE-CCSSCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeecceEEEcc-cCCCCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666543 333568999999863      67999999999999999999999987543

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=98.00  E-value=4.9e-06  Score=83.76  Aligned_cols=54  Identities=22%  Similarity=0.432  Sum_probs=49.1

Q ss_pred             ChhhhhHHHhHHHHHh-hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006616            1 MDAHLRYFKQGYELLH-QMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQI   54 (638)
Q Consensus         1 ~~a~~~ff~~G~~l~~-~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   54 (638)
                      |+||++|||+||+++. +|+||+++|..+++++|..++.+++.+.+++.+++...
T Consensus       204 ~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~~  258 (265)
T 2q12_A          204 MQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVAS  258 (265)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6899999999999985 99999999999999999999999999888888877543

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=97.95  E-value=0.00022  Score=76.09  Aligned_cols=106  Identities=11%  Similarity=0.144  Sum_probs=71.0

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+++|.|.+.+.. .+.++.|||+|-++-+++...+...   +                                 ..
T Consensus       255 r~Li~~G~l~~~~~~-~~k~~~r~~fLF~d~Ll~~k~~~~~---~---------------------------------~~  297 (402)
T 2dfk_A          255 SELIYTGEMAWIYQP-YGRNQQRVFFLFDHQMVLCKKDLIR---R---------------------------------DI  297 (402)
T ss_dssp             CCEEEEEEEEEESST-TCCCEEEEEEEETTEEEEEEECSSC---T---------------------------------TC
T ss_pred             cceEEeceEEEEecc-CCceEEEEEEeeCCEEEEEEecccc---C---------------------------------Cc
Confidence            346899999987542 3458899999997776665443211   0                                 01


Q ss_pred             ccccceeecccceeecCCCCCC------CcceEEEecC--CeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          177 SAARHTVNLLTSTIKVDADQSD------LRFCFRIISP--TKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~------rr~cF~I~t~--~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      ......|.|..+.|....+..+      -+++|.|..+  ..+|+|+|.|++++..||++|+.++..+...
T Consensus       298 ~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~~  368 (402)
T 2dfk_A          298 LYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQED  368 (402)
T ss_dssp             EEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeeeeeccceEEEecCCCCccccccccceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence            1223345565555543222111      2478999986  4689999999999999999999999876654

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.90  E-value=0.00028  Score=76.89  Aligned_cols=105  Identities=11%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ..+++|.|.+.+.. .+.++.|||+|-++-+++...+...   +                                 ...
T Consensus       333 ~li~~G~l~~~~~~-~~~~~~r~~fLF~d~Ll~~k~~~~~---~---------------------------------~~~  375 (466)
T 2pz1_A          333 ELIYSGELTRVTQP-QAKSQQRMFFLFDHQLIYCKKDLLR---R---------------------------------DVL  375 (466)
T ss_dssp             CEEEEEEEEEECTT-TCCEEEEEEEEETTEEEEEEECSSC---T---------------------------------TCE
T ss_pred             eeEEeeeEEEEecC-CCCeeEEEEEEECCEEEEEEecccc---C---------------------------------Cce
Confidence            46899999987542 3458899999997766665443211   0                                 011


Q ss_pred             cccceeecccceeecCCCCC------CCcceEEEecC--CeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          178 AARHTVNLLTSTIKVDADQS------DLRFCFRIISP--TKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~------~rr~cF~I~t~--~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      .....|.|..+.|....+..      .-+++|.|..+  .++|+|+|.|++|+..||++|+.++..+...
T Consensus       376 ~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~~  445 (466)
T 2pz1_A          376 YYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLD  445 (466)
T ss_dssp             EEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEeeeeeccceEEEeCCCCcccccccccceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence            22334555555554322211      22589999986  4689999999999999999999999876544

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=97.88  E-value=0.00041  Score=73.05  Aligned_cols=112  Identities=19%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+++|.|.++.+  .+.++.|||+|-++-+++..++........     ..       .+..         |+ .+..
T Consensus       251 R~li~~G~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~-----~~-------~~~~---------~~-~~~~  306 (368)
T 1xcg_A          251 RKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLLKC-----HS-------KTAV---------GS-SDSK  306 (368)
T ss_dssp             SCEEEEEEEEECCS--SSCCCEEEEEEESSEEEEEEECSSCEECCC----------------------------------
T ss_pred             ceEEeecceEeeec--CCCeeEEEEEcccccHHHhhcccccceeee-----cc-------cccc---------CC-CCcc
Confidence            35689999986632  346899999999776666544321100000     00       0000         00 0111


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecC-----CeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-----TKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-----~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      ......|.|..+.|+..+.   .+.+|.|++.     .++|+|+|.|+++++.||++|+.+|..
T Consensus       307 ~~~~~~i~l~~~~v~~~~~---~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~  367 (368)
T 1xcg_A          307 QTFSPVLKLNAVLIRSVAT---DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  367 (368)
T ss_dssp             -CCCSEEEGGGEEEEECSS---CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCcCCceEccceeeecccC---CCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            2223456666666653222   2567888764     478999999999999999999999865

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=97.84  E-value=0.00048  Score=73.86  Aligned_cols=112  Identities=20%  Similarity=0.196  Sum_probs=67.8

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+++|.|.++.+  .+.|+.|||+|-++-+++..++.....-....    .                 .. .+..+.+
T Consensus       293 r~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~----~-----------------~~-~~~~~~~  348 (418)
T 3t06_A          293 RKMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHS----K-----------------TA-VGSSDSK  348 (418)
T ss_dssp             SCEEEEEEEEECCB--TTBCCEEEEEEESSEEEEEEECSSCEECCC----------------------------------
T ss_pred             ceeEEeceEEEEeC--CCCeEEEEEEecCCEEEEEEEcCCceEEeecc----c-----------------cc-ccCCCcc
Confidence            45689999997743  24589999999977777665443210000000    0                 00 0000122


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecC-----CeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP-----TKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-----~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      ......|.|....|+..+.   -...|.|++.     .++|+|+|.|.+|++.||++|+.+|..
T Consensus       349 ~~~k~~i~l~~~~v~~~~~---~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~  409 (418)
T 3t06_A          349 QTFSPVLKLNAVLIRSVAT---DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  409 (418)
T ss_dssp             -CCCSEEEGGGEEEEECSS---CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             cccCCceechhceeccccc---cCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            2223456666666663222   2456777763     379999999999999999999999864

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=97.76  E-value=0.0002  Score=67.77  Aligned_cols=103  Identities=20%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+++|-|..+.+.  +.|+.||++|-++-+++..++ +.+                        +... .    .+.+
T Consensus        69 R~Ll~eG~L~~k~~~--~~~~d~~~fLf~D~Ll~~~~~-~~k------------------------y~~~-~----~~~~  116 (185)
T 2lg1_A           69 KKLVRDGSVFLKNAA--GRLKEVQAVLLTDILVFLQEK-DQK------------------------YIFA-S----LDQK  116 (185)
T ss_dssp             SCEEEEEEEEEECTT--CCEEEEEEEEESSEEECCEEE-TTE------------------------EECC-C----CSSS
T ss_pred             CceeeeceEEEeccC--CCeeeEEEEeecCEEEEEEec-CCE------------------------EEEE-c----ccCC
Confidence            467899999866433  369999999997766655433 211                        0000 0    0111


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecC----CeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP----TKNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~----~rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                         ...|.|....|+..+.  +.+ .|-+++.    .+.|.|.|.|.+|++.||++|+.+|...-
T Consensus       117 ---~pvi~L~~~~vre~a~--d~~-~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~  175 (185)
T 2lg1_A          117 ---STVISLKKLIVREVAH--EEK-GLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLN  175 (185)
T ss_dssp             ---CSEEESSSCEEECCSS--CSS-EEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCeEeecceEEeccCC--CCC-eEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhCC
Confidence               1235666677774333  333 3444442    37899999999999999999999998754

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=97.70  E-value=0.0013  Score=72.83  Aligned_cols=114  Identities=21%  Similarity=0.224  Sum_probs=65.6

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+++|.|.++...  +.|+.|||+|-++-+|+..++.....-..            .+     ..+     ....+.+
T Consensus       410 R~LI~eG~l~~~~~~--~k~~~r~~fLF~D~LL~~k~k~~ky~~k~------------~~-----~~~-----~~~~d~k  465 (536)
T 3odw_A          410 KKLVHEGPLTWRVTK--DKAVEVHVLLLDDLLLLLQRQDERLLLKS------------HS-----RTL-----TPTPDGK  465 (536)
T ss_dssp             SCEEEEEEEEEESCC-----CEEEEEEESSEEEEEEEETTEEECCC------------C---------------------
T ss_pred             ceeeeecceEEEecC--CCeeEEEEEEcCCEEEEEEEcCCeEEEee------------cc-----ccc-----ccccccc
Confidence            457899999887542  46899999999777777655432100000            00     000     0001122


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEec----CCeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIIS----PTKNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t----~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      ......|.|....|+-...  + ..+|.|++    +..+|.|+|.|.+|++.||+.|+.+|..+.
T Consensus       466 ~~~~~~i~L~~l~v~e~~~--d-~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~  527 (536)
T 3odw_A          466 TMLRPVLRLTSAMTREVAT--D-HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLK  527 (536)
T ss_dssp             -CCCSEEEGGGEEEEECTT--C-TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSC
T ss_pred             cccCceeecccceeecccc--c-CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCC
Confidence            2223346676666664322  3 33455544    347899999999999999999999997543

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=97.69  E-value=0.001  Score=70.14  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=65.8

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCC----CCC
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG----GVH  173 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~  173 (638)
                      ..+++|.|.++...  +.|+.|||+|-++-+++..++....                         .. ..|+    ...
T Consensus       258 ~li~eG~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~k~~k~-------------------------~~-k~~~~~~~~~~  309 (377)
T 3p6a_A          258 KLVHEGPLTWRVTK--DKAVEVHVLLLDDLLLLLQRQDERL-------------------------LL-KSHSRTLTPTP  309 (377)
T ss_dssp             CEEEEEEEEEESSS--SCEEEEEEEEESSEEEEEEEETTEE-------------------------EC-CCCCCC-----
T ss_pred             eEEEECCcEEEecC--CCeEEEEEEeeCCEEEEEEEcCcee-------------------------EE-eecccccccCc
Confidence            46899999776442  3689999999977777665442110                         00 0000    000


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEec---CCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIIS---PTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t---~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      +.+......|.|....++...  .+.+..|.|..   +...|.|+|.|.+|++.||+.|+.+|+.
T Consensus       310 ~~k~~~~~~i~l~~~~v~e~~--~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~  372 (377)
T 3p6a_A          310 DGKTMLRPVLRLTSAMTREVA--TDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGS  372 (377)
T ss_dssp             ----CSCSEEEGGGEEEEECT--TCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCeEechhhhccccc--cccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence            112112223566666666422  23345565554   3468999999999999999999999875

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=97.64  E-value=3.2e-05  Score=75.96  Aligned_cols=39  Identities=26%  Similarity=0.565  Sum_probs=27.5

Q ss_pred             CCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecC
Q 006616           95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQ  135 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~  135 (638)
                      +...|-++|||+|+ ++..++|+||||||+++ .+.||+..
T Consensus        17 ~~~~~~~~g~l~~~-~~~~~~w~~rw~vl~~~-~~~~~~~~   55 (228)
T 3tfm_A           17 GPGSPYFHSFLYMN-GGLMNSWKRRWCVLKDE-TFLWFRSK   55 (228)
T ss_dssp             ----CCEEEEEEEC-CTTTCCCEEEEEEEETT-EEEEESSC
T ss_pred             CCCCCceEEEEeec-CcccccceEEEEEEeCC-EEEEeccC
Confidence            34456789999999 55678999999999955 55555543

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=97.60  E-value=0.00036  Score=73.04  Aligned_cols=104  Identities=15%  Similarity=0.231  Sum_probs=69.6

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+++|.|.+. +    .++.|||+|-++-+++...+... +.    +.                       |. ....
T Consensus       245 r~li~eG~l~~~-g----~~~~~~~fLF~d~Ll~~k~~~~~-~~----~~-----------------------~~-~~~~  290 (354)
T 1dbh_A          245 NEFIMEGTLTRV-G----AKHERHIFLFDGLMICCKSNHGQ-PR----LP-----------------------GA-SNAE  290 (354)
T ss_dssp             CCEEEEEEEEET-T----CSSCEEEEEESSEEEEEEECTTC-CC----CT-----------------------TS-CCCS
T ss_pred             ceEEEEeeEEEE-e----cCceEEEEEeCCEEEEEecCCCC-CC----CC-----------------------CC-CCcc
Confidence            356899999887 2    57899999997766655443211 00    00                       00 0111


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ......|.|..+.|....+...-+++|.|.+++ .+|+|+|.|+++++.|+++|+.+..
T Consensus       291 y~~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~  349 (354)
T 1dbh_A          291 YRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY  349 (354)
T ss_dssp             EEEEEEEESCSCEEEECCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             eeEEEEEeccceEEEeCCcccccCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            223455777766666433333457999999986 8999999999999999999998764

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=97.45  E-value=0.0012  Score=68.98  Aligned_cols=109  Identities=18%  Similarity=0.268  Sum_probs=68.2

Q ss_pred             ceeEEEEEEeecCCC----------CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccc
Q 006616           98 QTIRQGYLSKRSSNL----------RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSH  167 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~----------~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~  167 (638)
                      ..+++|.|.+..+..          +..++.|||+|-++-+++...+.... .|..                        
T Consensus       209 ~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~-~~~~------------------------  263 (353)
T 1kz7_A          209 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENG-EGYE------------------------  263 (353)
T ss_dssp             CEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCC-SSCC------------------------
T ss_pred             hhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccc-cCCC------------------------
Confidence            478999998643211          22478999999977777655443110 0000                        


Q ss_pred             cCCCCCCccccccceeecccceeecCCCCCCCcceEEEecC--CeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          168 YHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP--TKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       168 ~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~--~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                           ..........|.+....|.-..+  +.+++|.|...  ..+|+|+|.|+++++.|+++|+.+|.....
T Consensus       264 -----~~~~y~~k~~i~l~~~~v~e~~~--~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~  329 (353)
T 1kz7_A          264 -----KAPSYSYKQSLNMTAVGITENVK--GDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ  329 (353)
T ss_dssp             -----CSCEEEEEEEEEGGGEEEECCBT--TBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCeEEEEEEeEcccceeeEcCC--CCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence                 00111222345555555442211  23688999864  578999999999999999999999976554

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=97.41  E-value=0.0044  Score=65.52  Aligned_cols=117  Identities=18%  Similarity=0.180  Sum_probs=69.6

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+++|.|.++..  ++.++.|||+|-++-+++..++........     ..   .    .     +     .+..+..
T Consensus       255 R~li~eG~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~-----~~---~----~-----~-----~~~~~~~  310 (385)
T 1txd_A          255 RKMIHEGPLVWKVN--RDKTIDLYTLLLEDILVLLQKQDDRLVLRC-----HS---K----I-----L-----ASTADSK  310 (385)
T ss_dssp             SCEEEEEEEEEESS--SSCBCCEEEEEESSEEEEEEEETTEEECCC----------------------------------
T ss_pred             ceEEEECcEEEEcC--CCCeEEEEEEecCCeeEEEEecCCeeEEee-----cc---c----c-----c-----cccCCCC
Confidence            35689999987643  246899999999777666554321100000     00   0    0     0     0000112


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecC---CeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISP---TKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~---~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      ......|.|..+.|+....  +.+.+|.|...   .++|+|+|.|+++++.||++|+.+|..+...
T Consensus       311 ~~~~~~i~l~~~~v~~~~~--d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~~  374 (385)
T 1txd_A          311 HTFSPVIKLSTVLVRQVAT--DNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQ  374 (385)
T ss_dssp             -CCCSEEEGGGEEEEECCC---CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceeccccccccccc--CCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhccCC
Confidence            2233456666666653222  33566776642   4789999999999999999999999887655

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=97.38  E-value=0.00034  Score=66.55  Aligned_cols=96  Identities=21%  Similarity=0.390  Sum_probs=59.9

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEec-----Cc-eEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDS-----RG-MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV  172 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~-----~~-~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  172 (638)
                      .+.||+...|.   .|.||+||+||+.     +. .|..|++..++.+|.                              
T Consensus         9 ~v~eg~vk~r~---~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~------------------------------   55 (224)
T 3ml4_A            9 ALVEGQVKLRD---GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGL------------------------------   55 (224)
T ss_dssp             CSEEEEEEEC------CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCC------------------------------
T ss_pred             eeEEEeeeeec---CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCC------------------------------
Confidence            46799999884   3579999999986     22 466665543322221                              


Q ss_pred             CCccccccceeeccc-ceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          173 HDEKSAARHTVNLLT-STIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       173 ~~~~~~~~~~i~l~~-~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                           ..+..+.|.. +.+.....-...++.+.|+..+.+++|.++|++.+.+|-..|+..
T Consensus        56 -----~~KaslsL~~~~GlE~g~~ldk~s~TlAIIc~d~~~vLAFds~e~l~~W~~~l~~s  111 (224)
T 3ml4_A           56 -----RERSSLTLEDICGLEPALPYEGLAHTLAIICLSQAVMLGFDSHEAMCAWDTRIRYA  111 (224)
T ss_dssp             -----CCSEEEEECCEEEEEEEEEETTEEEEEEEEESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             -----cccceeehHHhcCccccccccCcccEEEEEecCcEEEEEeCCHHHHHHHHHHHhhc
Confidence                 1111223311 111111111134799999999999999999999999999887653

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=97.27  E-value=0.0018  Score=57.52  Aligned_cols=38  Identities=24%  Similarity=0.436  Sum_probs=32.4

Q ss_pred             CcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          199 LRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       199 rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                      ...||.|+..+  ++..|.|+|++|++.|+.+|+..+...
T Consensus        84 ~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~  123 (131)
T 1mai_A           84 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHS  123 (131)
T ss_dssp             GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred             ccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            46899999887  699999999999999999999887543

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=97.24  E-value=0.0024  Score=65.45  Aligned_cols=103  Identities=18%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             ceeEEEEEEeecCC-CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           98 QTIRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~-~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..+.+|-+....+. ..+..+.|||+|-++-+++...+...  .+                                ...
T Consensus       202 ~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~--~~--------------------------------~~~  247 (311)
T 1nty_A          202 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDS--SG--------------------------------RSK  247 (311)
T ss_dssp             CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECT--TC--------------------------------CEE
T ss_pred             CceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccC--CC--------------------------------Cce
Confidence            35678877765432 23467899999997776665443211  00                                011


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEec-----CCeeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIIS-----PTKNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t-----~~rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                      ......|.+..+.|.-..+  +.+++|.|..     +..+|+|+|.|+++++.|+++|+.+|...
T Consensus       248 y~~k~~i~l~~~~v~e~~~--~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~  310 (311)
T 1nty_A          248 YLYKSKLFTSELGVTEHVE--GDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER  310 (311)
T ss_dssp             EEEEEEEEGGGEEEECCCT--TCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             eEEeeeeeccceeeEEccC--CCCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence            1223345565555542222  2367899986     34689999999999999999999999753

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.15  E-value=6.3e-05  Score=82.88  Aligned_cols=115  Identities=23%  Similarity=0.254  Sum_probs=0.0

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..+++|.|.|.     +.++.|||+|-++-+++....+.. ...|..              .+|.    ...+    ..-
T Consensus       252 ~li~eG~l~~~-----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~--------------~~f~----~~~~----~~~  304 (510)
T 3jzy_A          252 KLLHSGKLYKT-----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSE--------------KLFS----SKSN----AQF  304 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEeceEEEc-----CCCcEEEEEcccceeEEeeecccccccCCcc--------------cccC----cccc----cce
Confidence            45788888765     347899999997777665433221 000100              0000    0000    000


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      .+-+..|.|....|....+..+.++||+|.++.++|+|+|.|++|+..||++|+.+|......
T Consensus       305 ~v~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~  367 (510)
T 3jzy_A          305 KMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDT  367 (510)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             eEEcCceehhheEEeccCCCCccccceeeeccceeEEeccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            011233555555555332333567999999999999999999999999999999999876544

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=97.13  E-value=0.0027  Score=66.34  Aligned_cols=106  Identities=13%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             ceeEEEEEEeecCC----CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           98 QTIRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~----~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ..+++|-++.+.+.    ..+.++.|||+|-++-+++...+.... .|.                             . 
T Consensus       206 ~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~-~~~-----------------------------~-  254 (354)
T 2rgn_B          206 KLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGV-RGG-----------------------------T-  254 (354)
T ss_dssp             CEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------------------------------------
T ss_pred             cccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCC-CCC-----------------------------C-
Confidence            46788887765332    234688999999977666654432210 000                             0 


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEecC-----CeeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP-----TKNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-----~rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                      .........|.|....|.-..+  +.+++|.|...     ..+|+|+|.|+++++.||++|+.+|...
T Consensus       255 ~~~y~~k~~i~l~~~~v~~~~~--~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~  320 (354)
T 2rgn_B          255 QPGYVYKNSIKVSCLGLEGNLQ--GDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQ  320 (354)
T ss_dssp             -CCEEEEEEEEGGGEEEEESGG--GCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEcceeeccceeeeeccC--CCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            0111223345565555542211  23578999862     3689999999999999999999999653

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=97.11  E-value=0.0015  Score=68.13  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=30.5

Q ss_pred             cceEEEec----CCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          200 RFCFRIIS----PTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       200 r~cF~I~t----~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +++|.|..    +..+|+|+|.|+++++.||++|+.+|
T Consensus       308 ~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          308 KNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             SSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence            68999985    35799999999999999999999987

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=96.92  E-value=0.06  Score=56.48  Aligned_cols=60  Identities=12%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             cceeecccceeecCCCC-CCCcceEEEe--------cCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          180 RHTVNLLTSTIKVDADQ-SDLRFCFRII--------SPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~-~~rr~cF~I~--------t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      ...|.|....|...++. .+....|+|.        .|.++|+|+|.|++++..||++|+.+|....+.
T Consensus       303 k~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~~~  371 (377)
T 1foe_A          303 RHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKHRR  371 (377)
T ss_dssp             EEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccccceEEEecCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHhhh
Confidence            45577776666643322 2223458886        356899999999999999999999999776554

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=96.71  E-value=0.0073  Score=72.07  Aligned_cols=103  Identities=16%  Similarity=0.255  Sum_probs=67.6

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCC-CCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~-~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ...+++|.|.+.+++     +.|||+|-++-+++...+.... ..|.                             . ..
T Consensus       442 r~Li~eG~l~~~~~k-----~~r~~FLF~D~Ll~~K~~~~~~~~~g~-----------------------------~-~~  486 (1049)
T 3ksy_A          442 NEFIMEGTLTRVGAK-----HERHIFLFDGLMICCKSNHGQPRLPGA-----------------------------S-NA  486 (1049)
T ss_dssp             SCCCCEEEEEETTCS-----SCEEEEEETTEEEEEECCTTCCCCTTS-----------------------------C-CC
T ss_pred             ceEEEeceEEEEccC-----ceEEEEeeCCeEEEEEecCccCCCCCC-----------------------------C-CC
Confidence            346799999887532     7899999977666654432211 0010                             0 01


Q ss_pred             cccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      .......|.+....|....+....+++|.|...+ .+|+|+|.|++|++.||++|+.+..
T Consensus       487 ~y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~  546 (1049)
T 3ksy_A          487 EYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY  546 (1049)
T ss_dssp             SCCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEcCceEEEECCCCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            1223344566555555333333457999999876 4999999999999999999987764

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=95.91  E-value=0.033  Score=62.81  Aligned_cols=97  Identities=19%  Similarity=0.386  Sum_probs=57.0

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..+++.||+.|+++-....|+||+|.|..+++-.+ ... ..+                                   ..
T Consensus       557 ~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r~e~~-~e~-~~~-----------------------------------~~  599 (689)
T 3v5w_A          557 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWR-GEG-EAP-----------------------------------QS  599 (689)
T ss_dssp             SCCCEEEEEEEC-------CEEEEEEEETTEEEEE-CTT-SCC-----------------------------------CE
T ss_pred             CcceeecccccCCCcccchhhhhccccCCCccccc-ccC-CCC-----------------------------------cc
Confidence            34679999999966555689999999986554332 111 000                                   00


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                      ......+.    .|.  ........||.+...+ ++|.+++.|+.++.+|+..|+.+-...
T Consensus       600 l~~~~~v~----~v~--k~~i~~~~~l~~~~k~~k~f~~~t~~~~~~~~W~~~i~~~~~~~  654 (689)
T 3v5w_A          600 LLTMEEIQ----SVE--ETQIKERKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAYREA  654 (689)
T ss_dssp             EEEGGGEE----EEE--EEESSSCEEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecccc----ccc--cCcCCCCcceeeeecCCcEEEEECCChHHHHHHHHHHHHHHHHH
Confidence            00001111    111  1122345788888765 889999999999999999999887443

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=94.89  E-value=0.076  Score=45.93  Aligned_cols=100  Identities=12%  Similarity=0.155  Sum_probs=63.2

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ..+++|.+....+.  +.=+.||++|-...+|+.... ..  .+                                ....
T Consensus         9 ~Ll~q~~f~V~~~~--~k~~eR~vFLFe~~ilf~K~~-~~--~~--------------------------------~~~Y   51 (119)
T 1fho_A            9 RIIRHDAFQVWEGD--EPPKLRYVFLFRNKIMFTEQD-AS--TS--------------------------------PPSY   51 (119)
T ss_dssp             CSSEEEEEEECSTT--CSCEEEEEEEETTEEEEEEEC-CS--SS--------------------------------SCCC
T ss_pred             CccccCceEEEeCC--CCcceEEEEEecCcEEEEEEe-cC--CC--------------------------------CCcE
Confidence            45789999988653  234679999986666665433 11  00                                0112


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecCC--eeEEE--EeCCHH-HHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT--KNYTL--QAESAL-DQMDWIEKITGVIAS  235 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~--rt~~l--qA~se~-e~~~Wi~ai~~~i~~  235 (638)
                      .-...|.+....+....++ +.+..|+|..+.  ..|.+  ||.|.+ ..+.||+.|+..++.
T Consensus        52 ~~K~~ikl~~~~lte~~~~-~d~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~~  113 (119)
T 1fho_A           52 THYSSIRLDKYNIRQHTTD-EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEK  113 (119)
T ss_dssp             SSCCEEESSSCEEEEECTT-CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHH
T ss_pred             EEeeEEeeceeEEEecCCC-CCCcEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHHH
Confidence            2233455555555533331 235669998876  46888  999999 999999999885544

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=93.97  E-value=0.083  Score=52.39  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=32.8

Q ss_pred             CcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          199 LRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       199 rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ++|+|+|.+++  .++.|+|++.+++.+|+.+|+.+|.
T Consensus       225 ~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          225 EPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             SSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            68999999997  5789999999999999999998873

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=93.89  E-value=0.11  Score=47.84  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=40.1

Q ss_pred             eeecccceeec--CCCCCCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          182 TVNLLTSTIKV--DADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       182 ~i~l~~~~v~~--~~~~~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      .|.|..|-|..  ...+. ++.+|||.+++  .+.+|+|.+..+..+|+++|+..|.
T Consensus       122 ~IPLkMayvtR~~~~tD~-e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~  177 (178)
T 2adz_A          122 HVSLKMAYVSRRCTPTDP-EPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  177 (178)
T ss_dssp             EEETTTCEEEEECCSSCC-SSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             eecHHHHHHHHhccCCCC-CccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence            46666665432  23343 57899999998  4889999999999999999998773

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=91.72  E-value=4.1  Score=46.40  Aligned_cols=91  Identities=16%  Similarity=0.362  Sum_probs=54.2

Q ss_pred             eeEEEEEEeecCCC-CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           99 TIRQGYLSKRSSNL-RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~-~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ++..|||.....+. +++=|..||||..+.+.+| +...++.                                      
T Consensus       540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------------------------  580 (772)
T 3zvr_A          540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWY-KDDEEKE--------------------------------------  580 (772)
T ss_dssp             EEEEEEEEESSSCCC---CCEEEEEEESSEEEEE-SSTTCCC--------------------------------------
T ss_pred             ceeeeeeeecccccccCCCccceeeccccccccc-cchhhhc--------------------------------------
Confidence            88999999876554 4578899999997766665 4322211                                      


Q ss_pred             cccceeecccceeecC-CCCCCCcceEEEecCC--------eeEEEEeCCHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVD-ADQSDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKI  229 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~-~~~~~rr~cF~I~t~~--------rt~~lqA~se~e~~~Wi~ai  229 (638)
                       ....+.|....++-. ..-..+++.|.|..+.        +...|.|++.++.+.|...+
T Consensus       581 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  640 (772)
T 3zvr_A          581 -KKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASF  640 (772)
T ss_dssp             -EEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHH
T ss_pred             -ccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhh
Confidence             011122222222210 0011356888888764        46789999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	638
d1dcqa2	122	g.45.1.1 (A:247-368) Pyk2-associated protein beta	1e-39
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	9e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-04
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	2e-16
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	1e-15
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	2e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-06
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	1e-11
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	2e-11
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	6e-11
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	7e-11
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	8e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	9e-11
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	2e-10
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	6e-10
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	6e-10
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	9e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-05
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	2e-09
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	4e-09
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	6e-09
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	9e-09
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	2e-08
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	4e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-04
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	6e-07
d2elba1	268	a.238.1.1 (A:6-273) DCC-interacting protein 13-alp	1e-06
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	2e-06
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	2e-06
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	9e-06
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	1e-05
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	3e-05
d1y2oa1	248	a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain	4e-05
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	6e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1ki1b2	142	b.55.1.1 (B:1439-1580) GEF of intersectin {Human (	3e-04
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	3e-04
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	4e-04
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	4e-04
d1urua_	217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	5e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  138 bits (350), Expect = 1e-39
 Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 23/142 (16%)

Query: 305 SEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLD 364
           +++ I  ++R+ GND C DCGAP+P W S NLG+L CIECSG+HR LGVH S+++SLTLD
Sbjct: 2   TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD 61

Query: 365 VKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHS 424
             V   S + L +++GNA  N + E  L S                         KP+  
Sbjct: 62  --VLGTSELLLAKNIGNAGFNEIMECCLPSEDPV---------------------KPNPG 98

Query: 425 DSISVKEKFIHAKYAEKLFVRK 446
             +  ++ +I AKY E+ + RK
Sbjct: 99  SDMIARKDYITAKYMERRYARK 120

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.6 bits (234), Expect = 9e-23
 Identities = 39/240 (16%), Positives = 74/240 (30%), Gaps = 53/240 (22%)

Query: 13  ELLHQMEPYINQVL------TYAQQSRER-SNYEQAALNERMQEYKRQIDRESRWASNGS 65
            LL  +E ++   L        A++ RE      +   +  +QE++ + D E     +  
Sbjct: 6   NLLADVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQDKGDAEDGDEYDDP 65

Query: 66  NGSPNGDGIQAIGRSS-----HKMIEAVMQSAAKGKVQTIRQGYLSKRSSN---LRGDWK 117
              P      A  R                 AA+     I+ GYL KR  +   L  +W+
Sbjct: 66  FAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQ 125

Query: 118 RRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS 177
           +R+  L      YY   +  +  G                      +  +     +  + 
Sbjct: 126 KRWCALSKTVFYYYGSDKDKQQKG-------------------EFAIDGYDVRMNNTLRK 166

Query: 178 AARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIASL 236
             +                     CF I +P  + Y   A S  D  +W++++  ++  L
Sbjct: 167 DGKK------------------DCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDL 208

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 5e-17
 Identities = 25/85 (29%), Positives = 39/85 (45%)

Query: 548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA 607
           T LH+A     + +++ LLQ GA+ N ++ +  TPLH     G    AK LL   A   A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 608 VNREGKTSLELAVESNFADSEVLAI 632
             ++ +T L  A      +   L +
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLL 86

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 3e-12
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 34/128 (26%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANI------------------------------ 572
           +  G T LHL      + + ++L+++G  +                              
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320

Query: 573 ---NATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD-SE 628
              NA    G +PLH+   +G      LLL  GA P  V+ +G T L +A    +   ++
Sbjct: 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 380

Query: 629 VLAILSDS 636
           VL +++D 
Sbjct: 381 VLKVVTDE 388

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           +++  T LH+A  +    + + LLQ  A +NA      TPLH     G     KLLL   
Sbjct: 30  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 89

Query: 603 ADP 605
           A+P
Sbjct: 90  ANP 92

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 9e-11
 Identities = 30/86 (34%), Positives = 41/86 (47%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
               +G T LH+A     + + ELLL+  A+ NA    GLTPLH  +        KLLL 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 601 RGADPRAVNREGKTSLELAVESNFAD 626
           RG  P +    G T L +A + N  +
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVE 212

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 2e-10
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL---L 599
              G + LH A       ++ LLL+ GA+ N   S G TPL      G      +L    
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 386

Query: 600 TRGADPRAVNREGKTSLELAVE 621
              +     ++   +  E   E
Sbjct: 387 DETSFVLVSDKHRMSFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 4e-09
 Identities = 25/84 (29%), Positives = 41/84 (48%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A    ++ +++LLL  G + ++    G TPLH    + +   A+ LL  G
Sbjct: 162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 221

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
               A + +G T L LA +   A+
Sbjct: 222 GSANAESVQGVTPLHLAAQEGHAE 245

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 37/86 (43%)

Query: 531 NLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 590
           +L         + ++G T LHLA       M+ LLL   AN N  +  GLTPLH     G
Sbjct: 216 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG 275

Query: 591 KAMFAKLLLTRGADPRAVNREGKTSL 616
               A +L+  G    A  R G T L
Sbjct: 276 HVPVADVLIKHGVMVDATTRMGYTPL 301

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 31/117 (26%), Positives = 40/117 (34%), Gaps = 33/117 (28%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQY---------------------------------G 569
             +  T LH A       M++LLL+                                   
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 570 ANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
           A+      +G TPLH     GK   A+LLL R A P A  + G T L +AV  N  D
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 580 LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
           LTPLH     G     K LL RGA P   N + +T L +A  +   +
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 47

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 28/84 (33%), Positives = 39/84 (46%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A     + +   LLQYG + NA   +G+TPLH     G A    LLL++ 
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 254

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A+    N+ G T L L  +     
Sbjct: 255 ANGNLGNKSGLTPLHLVAQEGHVP 278

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 2e-16
 Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 16/141 (11%)

Query: 100 IRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSEL 155
           I +    KRS         ++K+  F+L    + YY                  R  S+ 
Sbjct: 4   ILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYE-----------YDFERGRRGSKK 52

Query: 156 GSGLLSRWLS-SHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTL 214
           GS  + +           +             +S ++  +      + F+++       +
Sbjct: 53  GSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYV 112

Query: 215 QAESALDQMDWIEKITGVIAS 235
            + +   +  WI ++  VI  
Sbjct: 113 FSPTEELRKRWIHQLKNVIRY 133

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.8 bits (175), Expect = 1e-15
 Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 20/134 (14%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
           R+G+L K    ++  WKRR+F+L    + Y+      +  G                   
Sbjct: 7   REGWLLKLGGRVKT-WKRRWFILTDNCLYYFEYTTDKEPRGI------------------ 47

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAL 220
              L +     V D +      +   +   +V            +      Y + A S  
Sbjct: 48  -IPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPE 106

Query: 221 DQMDWIEKITGVIA 234
           ++ +W++ I   I+
Sbjct: 107 EKEEWMKSIKASIS 120

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 44/139 (31%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           I+ GY  K+ + ++  WKRR+F LD   + Y+  +   +                     
Sbjct: 4   IKAGYCVKQGAVMKN-WKRRYFQLDENTIGYFKSELEKEPLR------------------ 44

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR---FCFRIISPTKNYTLQA 216
                                  + L       +  QSD+      F I++ ++ + +QA
Sbjct: 45  ----------------------VIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQA 82

Query: 217 ESALDQMDWIEKITGVIAS 235
           +S  +   WI+ ++G I +
Sbjct: 83  DSPEEMHSWIKAVSGAIVA 101

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 2e-12
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR 601
              G T L LA +   +G+++ LL Q    IN TDS G T L   +       A+LL  R
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

Query: 602 GADPRAVN 609
           GA     +
Sbjct: 276 GASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 6e-11
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 561 MLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAVNREGKTSLELA 619
           +  LLL +GA++N    RG TPL   + +      + LL +   +    + +GKT+L LA
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 620 VESNFAD 626
           VE     
Sbjct: 261 VELKLKK 267

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 1e-09
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 537 EGQTMDDLEGCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMFA 595
           E Q      G T L  A +   + +L++LL + GA++NA D+ G   L   +L       
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

Query: 596 ----KLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG 638
                LLL  GAD       GKT L LAVE       ++  L +   
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKK--HLGLVQRLLEQEH 243

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 3e-08
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 544 LEGCTLLHLACDSADIGMLELLLQYGANINATDSR-GLTPLHRCILRGKAMFAKLLL 599
           +E   LL  A  + D+ +++ LL+ GAN+N  +   G TPLH  +   +    +LLL
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 3e-12
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 36/126 (28%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMF-------- 594
           +  GCT LH A       +  +LL+ GAN +A D    T +HR   +G            
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 159

Query: 595 -------------------------AKLLLTRGADPRAVNREGKTSLELAVESNFADSEV 629
                                    AKLL+++GA     N+E KT L++A         +
Sbjct: 160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGL---GLI 216

Query: 630 LAILSD 635
           L  + +
Sbjct: 217 LKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 7e-09
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           LH+A  +    +++ LL  GA +NA +  G TPLH    + +   A +LL  GA+P A +
Sbjct: 74  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 133

Query: 610 REGKTSL 616
               T++
Sbjct: 134 HYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 23/113 (20%), Positives = 31/113 (27%), Gaps = 34/113 (30%)

Query: 548 TLLHLACDSADIGML-ELLLQYGANINATDSRGLTPLHRCILRGKAMF------------ 594
            ++     S  +  L E +L   +    TD    T LH     G                
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 595 ---------------------AKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
                                 K LL +GA   AVN+ G T L  A   N  +
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE 117

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.1 bits (157), Expect = 4e-12
 Identities = 27/79 (34%), Positives = 41/79 (51%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
              G T LH+A       +L+LL+Q   ++N  D  G TPLH     GK    ++L+   
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 603 ADPRAVNREGKTSLELAVE 621
            D  AVN+ G+T+ ++A E
Sbjct: 256 CDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 18/68 (26%), Positives = 27/68 (39%)

Query: 526 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHR 585
           S   L        +T    +   +   AC S D   +  LL+ GA+IN  +  GLT LH+
Sbjct: 20  SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQ 79

Query: 586 CILRGKAM 593
             +     
Sbjct: 80  ACIDDNVD 87

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 15/80 (18%), Positives = 21/80 (26%)

Query: 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR 606
                           + L     N       G T LH    +G     KLL+    D  
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226

Query: 607 AVNREGKTSLELAVESNFAD 626
             + +G T L  A      +
Sbjct: 227 IKDYDGWTPLHAAAHWGKEE 246

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (155), Expect = 8e-12
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQ---YGANINATDSRGLTPLHRCILRGKAMFAKLL 598
              E  +  +         +LE L         +NA DS G T L+     G       L
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 599 LTRGADPRAVNREGKTSLELAV 620
           L  GADP   N+ G   ++   
Sbjct: 279 LDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 521 SSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINA-TDSRG 579
              +    SLN   ++              H++ DS    + +       N+N   D  G
Sbjct: 49  PEIQEMPTSLNNDSSNRNSEGGS-SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG 107

Query: 580 LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELA 619
            TPLH           K L+  G++    +  G++ L  A
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM----FAKLL 598
           D  G T LH     A++ +++ L+++G+N    D+ G + L + +          F  LL
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 599 LTRGADPRAVNREGKTSLELAVESN 623
                     +   +T L   + ++
Sbjct: 164 DYLYPCLILEDSMNRTILHHIIITS 188

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 18/137 (13%), Positives = 47/137 (34%), Gaps = 41/137 (29%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
            ++GYL+K+   ++  WK R+F L    + Y+  +   +                     
Sbjct: 5   TKEGYLTKQGGLVKT-WKTRWFTLHRNELKYFKDQMSPEPIR------------------ 45

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
                                  ++L   +        +   CF ++ P + + L A++ 
Sbjct: 46  ----------------------ILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKTG 83

Query: 220 LDQMDWIEKITGVIASL 236
           ++  +WI+ +   ++ +
Sbjct: 84  VEADEWIKILRWKLSQI 100

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 39/143 (27%)

Query: 98  QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGS 157
           + IR+GYL K+ S     WK  + VL   G+ +Y +K  +   G                
Sbjct: 4   KRIREGYLVKKGSVFNT-WKPMWVVLLEDGIEFYKKKSDNSPKG---------------- 46

Query: 158 GLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAE 217
                 L          +                               +  +++  QA 
Sbjct: 47  ---MIPLKGSTLTSPCQDFGKRMF-------------------VFKITTTKQQDHFFQAA 84

Query: 218 SALDQMDWIEKITGVIASLLSSQ 240
              ++  W+  I   I  +   +
Sbjct: 85  FLEERDAWVRDINKAIKCIEGLE 107

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 6e-11
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 41/141 (29%)

Query: 100 IRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELG 156
           I+QGYL K+S +      +W++R+ V+  RG+ YYY  + SK                 G
Sbjct: 2   IKQGYLEKKSKDHSFFGSEWQKRWCVVS-RGLFYYYANEKSK--------------QPKG 46

Query: 157 SGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQ 215
           + L+  +          D K                         CF + S   + Y   
Sbjct: 47  TFLIKGYSVRMAPHLRRDSKK----------------------ESCFELTSQDRRTYEFT 84

Query: 216 AESALDQMDWIEKITGVIASL 236
           A S  +  DW+++I+ ++  L
Sbjct: 85  ATSPAEARDWVDQISFLLKDL 105

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 7e-11
 Identities = 20/155 (12%), Positives = 35/155 (22%), Gaps = 33/155 (21%)

Query: 95  GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSE 154
           G       GYL     N+   WK+RFFVL       +                       
Sbjct: 4   GSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMC-------------------- 43

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTL 214
                 S          +           +               R  F  +        
Sbjct: 44  ------SYREKKAEPQELLQLDGYTVDYTD-------PQPGLEGGRAFFNAVKEGDTVIF 90

Query: 215 QAESALDQMDWIEKITGVIASLLSSQAPERCLPTS 249
            ++   D++ W++ +            P +  P+S
Sbjct: 91  ASDDEQDRILWVQAMYRATGQSHKPVPPTQSGPSS 125

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 8e-11
 Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 35/135 (25%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           I+QG L K+    +  WK R F+L       +Y          G+        + + S  
Sbjct: 3   IKQGCLLKQGHRRKN-WKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVES-- 59

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAES 218
                                            +  +S+    F II+    +Y LQA +
Sbjct: 60  -------------------------------NSNGRKSEEENLFEIITADEVHYFLQAAT 88

Query: 219 ALDQMDWIEKITGVI 233
             ++ +WI+ I    
Sbjct: 89  PKERTEWIKAIQMAS 103

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.9 bits (146), Expect = 8e-11
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
             D +G T + LA     I ++  L+Q GA++ A D+   T               +  
Sbjct: 216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELL-LQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
            +  +G T LH A   +++ +++ L  + G+N +  D  G TP+      G+      L+
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 241

Query: 600 TRGADPRAVNREGKTSLELAVESNFAD 626
            +GA   AV+    T+ +LA  +N  +
Sbjct: 242 QQGASVEAVDATDHTARQLAQANNHHN 268

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 8e-06
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 548 TLLHLACDSAD-IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT------ 600
           + + L  ++A    + E + +   NI        T LH       A  ++ L+       
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 601 --RGADPRAVNREGKTSL 616
              GAD  A++ +  T L
Sbjct: 61  IAAGADVNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQY--------GANINATDSRGLTPLHRC 586
           D     T+LH    ++     E L+ +        GA++NA D    TPL   
Sbjct: 29  DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 81

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 9e-11
 Identities = 25/131 (19%), Positives = 37/131 (28%), Gaps = 39/131 (29%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
             +G+L K+ S+    WKRR+FVL    + YY   +     GS    S            
Sbjct: 10  HIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPS------------ 57

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP-TKNYTLQAES 218
                                                   RF F    P  + Y L A++
Sbjct: 58  --------------------------YNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADT 91

Query: 219 ALDQMDWIEKI 229
             D   W+  +
Sbjct: 92  LEDLRGWLRAL 102

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 16/144 (11%), Positives = 43/144 (29%), Gaps = 44/144 (30%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           ++ G+L K S   +  +++R+   D   + YY  ++   S                    
Sbjct: 2   VKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYS-------------------- 41

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
                               +  + L   +      +      F +++  + +  + E  
Sbjct: 42  --------------------KGIIPLSAIST----VRVQGDNKFEVVTTQRTFVFRVEKE 77

Query: 220 LDQMDWIEKITGVIASLLSSQAPE 243
            ++ DWI  +   + S   +   +
Sbjct: 78  EERNDWISILLNALKSQSLTSQSQ 101

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 6e-10
 Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 43/150 (28%)

Query: 96  KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRG-MLYYYRKQCSKSSGSGSQLSSQRNSSE 154
            V  +++G+L KR   ++  W+ R+F+L + G  + Y  +                    
Sbjct: 4   DVAIVKEGWLHKRGEYIKT-WRPRYFLLKNDGTFIGYKERPQDVDQREAPL--------- 53

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP----TK 210
                     S      +  E+                          F I         
Sbjct: 54  -------NNFSVAQCQLMKTER---------------------PRPNTFIIRCLQWTTVI 85

Query: 211 NYTLQAESALDQMDWIEKITGVIASLLSSQ 240
             T   E+  ++ +W   I  V   L   +
Sbjct: 86  ERTFHVETPEEREEWTTAIQTVADGLKKQE 115

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 6e-10
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 31/147 (21%)

Query: 93  AKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNS 152
           + G    I+ G+L K+ S ++  W++R+FVL ++ + YY  ++ +K  G           
Sbjct: 2   SSGSSGPIKMGWLKKQRSIVKN-WQQRYFVLRAQQLYYYKDEEDTKPQGCMY-------- 52

Query: 153 SELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNY 212
                                + + A +    ++ ++              +      +Y
Sbjct: 53  ----------LPGCTIKEIATNPEEAGKFVFEIIPAS------------WDQNRMGQDSY 90

Query: 213 TLQAESALDQMDWIEKITGVIASLLSS 239
            L A S  +  +W++ +  V  S  SS
Sbjct: 91  VLMASSQAEMEEWVKFLRRVAGSGPSS 117

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 9e-10
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 34/153 (22%)

Query: 91  SAAKGKVQTIRQ----GYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQL 146
           S + G     RQ    G+L    +   G + RR+F+LD++     +     ++   G   
Sbjct: 3   SGSSGMPYVDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVG--- 59

Query: 147 SSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRII 206
                         +  + S     +     A                 +    FCF I 
Sbjct: 60  --------------AGAVGSLQLTYISKVSIATPK-------------QKPKTPFCFVIN 92

Query: 207 SPTKNYTLQAESALDQMDWIEKITGVIASLLSS 239
           + ++ Y LQA    D  DW+E +     S  SS
Sbjct: 93  ALSQRYFLQANDQKDLKDWVEALNQASKSGPSS 125

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 11/95 (11%), Positives = 22/95 (23%), Gaps = 5/95 (5%)

Query: 543 DLEGCTLLHLAC---DSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
            ++   +  +A     S+ +  L LLL     +    +            G       L 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 600 TRGADPRAVNRE--GKTSLELAVESNFADSEVLAI 632
                      +     +  LA E+          
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.3 bits (119), Expect = 3e-07
 Identities = 7/65 (10%), Positives = 13/65 (20%), Gaps = 2/65 (3%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATD--SRGLTPLHRCILRGKAMFAKLLLT 600
             E      LA ++  + +L  L +           +            G       L  
Sbjct: 123 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

Query: 601 RGADP 605
                
Sbjct: 183 LAPTE 187

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 14/94 (14%)

Query: 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAM------------- 593
              + L        + +LL  Y A+ N    +  +  H+  ++ + +             
Sbjct: 47  AIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSAL 106

Query: 594 -FAKLLLTRGADPRAVNREGKTSLELAVESNFAD 626
               LLLT     + +  E   +  LA E+    
Sbjct: 107 DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 140

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 9/59 (15%), Positives = 12/59 (20%), Gaps = 5/59 (8%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGA-----NINATDSRGLTPLHRCILRGKAMFAKLLL 599
               L    D   +  +  LL                     L   +  G      LLL
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 0.003
 Identities = 13/91 (14%), Positives = 20/91 (21%), Gaps = 3/91 (3%)

Query: 533 AGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANIN---ATDSRGLTPLHRCILR 589
              +E   M   E      LA ++  + +L  L +                      + R
Sbjct: 148 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 207

Query: 590 GKAMFAKLLLTRGADPRAVNREGKTSLELAV 620
           G       LL                 E  V
Sbjct: 208 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 238

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD 604
            T LHLA ++    +LELLL+ GA+  A    G TPL   +LR   + A+LL   GA 
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 1e-08
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGAN---INATDSRGLTPLHRCILRGKAMF 594
             +G T LHLA        L+ LL + A    ++  +  G T LH   + G+A  
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 8e-06
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 572 INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN---REGKTSLELAVESN 623
                  G T LH  ++     F   LL   A    ++     G+T+L LA    
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 37/131 (28%)

Query: 542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRG---------------------- 579
            D         +  + +         +   + A +  G                      
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 580 ------------LTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS 627
                        TPLH  +    A   +LLL  GADP A    G+T L  A+     + 
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP--NP 238

Query: 628 EVLAILSDSHG 638
            +  +L  +HG
Sbjct: 239 ILARLLR-AHG 248

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 33/133 (24%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
            + GYL K  S       +RFFVL +              +G  ++L    N  +     
Sbjct: 3   RKVGYLRKPKS-----MHKRFFVLRAASE-----------AGGPARLEYYENEKK----- 41

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
             R  SS               ++ L +         S  +    + +  +++ + A+S 
Sbjct: 42  -WRHKSSAPKR-----------SIPLESCFNINKRADSKNKHLVALYTRDEHFAIAADSE 89

Query: 220 LDQMDWIEKITGV 232
            +Q  W + +  +
Sbjct: 90  AEQDSWYQALLQL 102

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 32/140 (22%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
             +G L K+ + ++  WK R+FVLD       Y      +   G    ++  +   G+  
Sbjct: 9   SYEGILYKKGAFMKP-WKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPT 67

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
           +    +                                     F + +  + Y   A+  
Sbjct: 68  IGAPKTVDEK-------------------------------AFFDVKTTRRVYNFCAQDV 96

Query: 220 LDQMDWIEKITGVIASLLSS 239
                W+++I   ++S  SS
Sbjct: 97  PSAQQWVDRIQSCLSSGPSS 116

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 6e-09
 Identities = 24/130 (18%), Positives = 38/130 (29%), Gaps = 29/130 (22%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
           ++QGYL+K+    +  WK R FVL       +Y     + +      S            
Sbjct: 12  VKQGYLAKQGHKRKN-WKVRRFVLRKDPAFLHYYDPSKEENRPVGGFS------------ 58

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
               L       + D                              I     +Y +QA S 
Sbjct: 59  ----LRGSLVSALEDNGV------------PTGVKGNVQGNLFKVITKDDTHYYIQASSK 102

Query: 220 LDQMDWIEKI 229
            ++ +WIE I
Sbjct: 103 AERAEWIEAI 112

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (122), Expect = 9e-09
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 41/146 (28%)

Query: 92  AAKGKVQTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSS 148
            A+     I+ GYL KR  +   L  +W++R+  L      YY   +  +  G  +    
Sbjct: 2   PAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFA---- 57

Query: 149 QRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISP 208
                      +  +     +    D K                         CF I +P
Sbjct: 58  -----------IDGYDVRMNNTLRKDGKK----------------------DCCFEICAP 84

Query: 209 -TKNYTLQAESALDQMDWIEKITGVI 233
             + Y   A S  D  +W++++  ++
Sbjct: 85  DKRIYQFTAASPKDAEEWVQQLKFIL 110

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 20/147 (13%), Positives = 43/147 (29%), Gaps = 19/147 (12%)

Query: 93  AKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNS 152
           + G    +   +L  R +     W + + VL    +L Y  ++  +  G+          
Sbjct: 2   SSGSSGIVMADWLKIRGT--LKSWTKLWCVLKPGVLLIYKTQKNGQWVGT---------- 49

Query: 153 SELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNY 212
                  +              +    +    L  S   V   + +         P+   
Sbjct: 50  -------VLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYL 102

Query: 213 TLQAESALDQMDWIEKITGVIASLLSS 239
            ++A S  D   W++ +   + S  SS
Sbjct: 103 IIRATSESDGRCWMDALELALKSGPSS 129

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 40/142 (28%)

Query: 102 QGYLSKRSSNLRGD-------WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSE 154
           +GY++++              W + +    +  + +Y  ++  KS+   +          
Sbjct: 11  EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELT---------- 60

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN-YT 213
                                      + +L  + I++ +D +  +   R+       + 
Sbjct: 61  ----------------------FRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFL 98

Query: 214 LQAESALDQMDWIEKITGVIAS 235
           LQA    +   W+  +     S
Sbjct: 99  LQAHDDTEMSQWVTSLKAQSDS 120

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 6e-08
 Identities = 26/80 (32%), Positives = 38/80 (47%)

Query: 547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR 606
            + L  A ++  + M++LLLQ+GAN+NA    G + LH    RG     + L+  GAD  
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 607 AVNREGKTSLELAVESNFAD 626
             N    T L +A      D
Sbjct: 205 LKNCHNDTPLMVARSRRVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 539 QTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRG 590
                  G + LH A     + ++  L++ GA+ +  +    TPL     R 
Sbjct: 170 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 5e-07
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 545 EGCTLLHLACDSADIGMLELLLQY----GANINATDSRGLTPLHRCILRGKAMF 594
           +G T LH+A    ++  +  L+      G  ++  ++   TPLH  ++      
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 55

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 579 GLTPLHRCILRGKAMFAKLLLT----RGADPRAVNREGKTSLELAVESNF 624
           G TPLH  +++G       L+      G +    N   +T L LAV +  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 37/127 (29%)

Query: 103 GYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSR 162
           G L    S     W   +  +        +                              
Sbjct: 5   GPLRLSESG--ETWSEVWAAIPMSDPQVLH------------------------------ 32

Query: 163 WLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQ 222
                  GG  D +      +     ++    ++ D    +++    +++ L A SA  Q
Sbjct: 33  -----LQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQ 87

Query: 223 MDWIEKI 229
             W+E +
Sbjct: 88  QQWLETL 94

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 23/84 (27%), Positives = 35/84 (41%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           D  G T LH A    +   + +LL + AN +A D +  TPL      G    +K LL   
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 603 ADPRAVNREGKTSLELAVESNFAD 626
           A+    +   +   ++A E    D
Sbjct: 180 ANREITDHMDRLPRDVASERLHHD 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 15/58 (25%), Positives = 18/58 (31%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
             D +  T L LA         + LL   AN   TD     P      R      +LL
Sbjct: 151 AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 561 MLELLLQYGANINAT-DSRGLTPLHRCILRGKAMFAKLL 598
           ++  LL  GA +NAT D  G T LH      +A  AK L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 32/131 (24%)

Query: 100 IRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
           IR+G+L+  +   ++G  K  +FVL +  + +Y   +  +                    
Sbjct: 4   IRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYM---------------- 47

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES 218
                + +     V     +++H   L                   +    +   L  E+
Sbjct: 48  ---LSVDNLKLRDVEKGFMSSKHIFALFN------------TEQRNVYKDYRQLELACET 92

Query: 219 ALDQMDWIEKI 229
             +   W    
Sbjct: 93  QEEVDSWKASF 103

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGAN-INATDSRGLTPLHRCILRGKAMFAKLLLTR 601
           D      LH A     + ++ELL   G + +N  D +G TPL   +  G    A LL+ +
Sbjct: 135 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 194

Query: 602 -GADPRAVNREGKTSLELAVESNFAD 626
            GA+   V+ +G  + ++A+      
Sbjct: 195 YGAEYDLVDNKGAKAEDVALNEQVKK 220

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
             D +G T L  A          LL+ +YGA  +  D++G       +        K  L
Sbjct: 167 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFL 223

Query: 600 TRGAD 604
               D
Sbjct: 224 NNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 550 LHLACDSADIGMLELLL-QYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG 602
           LH AC   +   ++ LL    + +   D  G  PLH  +          LL++ 
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 581 TPLHRCILRGK-AMFAKLLLTRGADPRAVNREGKTSLELAVESN 623
            PLH+  +  +     +LL ++ +     +++G+  L  +V   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ 45

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 24/131 (18%)

Query: 99  TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
           T+R+G++   S+      KR ++ LD + +  +     ++                    
Sbjct: 1   TLREGWVVHYSNKDTL-RKRHYWRLDCKCITLFQNNTTNRYYKEIP-------------- 45

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES 218
                LS           S      N     I      ++  +    +          + 
Sbjct: 46  -----LSEILTVESAQNFSLVPPGTNPHCFEIVT----ANATYFVGEMPGGTPGGPSGQG 96

Query: 219 ALDQMDWIEKI 229
           A     W   I
Sbjct: 97  AEAARGWETAI 107

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 20/82 (24%), Positives = 33/82 (40%)

Query: 541 MDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT 600
            +   G T LHLA D  +  ++ LLL+ GA++N    +G +P      R      + L  
Sbjct: 140 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

Query: 601 RGADPRAVNREGKTSLELAVES 622
              +   +  E +       ES
Sbjct: 200 LTLENLQMLPESEDEESYDTES 221

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 545 EGCTLLHLACDSADIG----MLELLLQYGANINATDSRGLTPLHRC 586
           +G + LHLA    +      ++  +    A +N  ++   TPLH  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 551 HLACDSADIGMLELLLQYGANI-NATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN 609
           HLA     +G++ELL+  GA++       G T LH  +         LLL  GAD   V 
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 175

Query: 610 REGKTSLELAVESNFADSEVLAIL 633
            +G +  +L        + +   L
Sbjct: 176 YQGYSPYQLTWGRP--STRIQQQL 197

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 37/137 (27%)

Query: 99  TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSG 158
           +I+ G L          W   +FVL S  + Y          G                 
Sbjct: 1   SIKNGILYLEDPVNHE-WYPHYFVLTSSKIYYSEETSSDLLRG----------------- 42

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES 218
                + +                        +   ++  +           +  + A+S
Sbjct: 43  --VLDVPACQI-----------------AIRPEGKNNRLFVFSISMPSVAQWSLDVAADS 83

Query: 219 ALDQMDWIEKITGVIAS 235
             +  DW++KI  V  +
Sbjct: 84  QEELQDWVKKIREVAQT 100

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 268

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 1   MDAHLRYFKQGYELL-HQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDR 56
           M A + +FK G E L  Q+E ++  + T  Q  R   + +   + + +++ +   D 
Sbjct: 199 MQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDP 255

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 22/144 (15%), Positives = 40/144 (27%), Gaps = 45/144 (31%)

Query: 101 RQGYLS---------KRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
           ++G+L          KR       WK+ + VL     LY Y+ +                
Sbjct: 3   KEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLR-GHSLYLYKDKR--------------- 46

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN 211
                                    S     +++    I +   ++  +  FR+ +    
Sbjct: 47  --------------------EQTTPSEEEQPISVNACLIDISYSETKRKNVFRLTTSDCE 86

Query: 212 YTLQAESALDQMDWIEKITGVIAS 235
              QAE   D + WI+ I      
Sbjct: 87  CLFQAEDRDDMLAWIKTIQESSNL 110

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC 136
           I  GY+SK  +     W+RR+F L    + +    + 
Sbjct: 11  IMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEA 47

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (101), Expect = 9e-06
 Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 5/135 (3%)

Query: 109 SSNLRGDWKRRFFVLDSR--GMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSS 166
           SS   G+   +  ++D +  G L +       +SG G     Q+    L   +       
Sbjct: 2   SSGSSGNLAAKVELVDIQREGALRF-MVADDAASGPGGTAQWQKCRLLLRRAVAGERFRL 60

Query: 167 HYHGGVHDEKSAARHTVNLLTSTIKVDADQS-DLRFCFRIISPTKN-YTLQAESALDQMD 224
            +       +      ++ +         +  +    F +       Y L+   +L +  
Sbjct: 61  EFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHS 120

Query: 225 WIEKITGVIASLLSS 239
           W+  I G + S  SS
Sbjct: 121 WVADIQGCVDSGPSS 135

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 15/135 (11%), Positives = 33/135 (24%), Gaps = 40/135 (29%)

Query: 100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGL 159
             +G+L  + S  R  ++  +  L    + +Y  K+                        
Sbjct: 12  YFEGFLLIKRSGYRE-YEHYWTELRGTTLFFYTDKKSII--------------------- 49

Query: 160 LSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESA 219
              ++       +           N                  F ++ P +   L+ E+ 
Sbjct: 50  ---YVDKLDIVDLTCLTEQNSTEKN---------------CAKFTLVLPKEEVQLKTENT 91

Query: 220 LDQMDWIEKITGVIA 234
               +W   I  V  
Sbjct: 92  ESGEEWRGFILTVTE 106

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 16/135 (11%), Positives = 38/135 (28%), Gaps = 42/135 (31%)

Query: 101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLL 160
              YL+   ++    WK R+  +    + +Y  +  SK +                    
Sbjct: 3   TSSYLNVLVNS---QWKSRWCSVRDNHLHFYQDRNRSKVA-------------------- 39

Query: 161 SRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAL 220
                              +  ++L+   +  D     L     +    +   L+A+S+ 
Sbjct: 40  -------------------QQPLSLVGCEVVPDPSPDHLYSFRILHKGEELAKLEAKSSE 80

Query: 221 DQMDWIEKITGVIAS 235
           +   W+  +     S
Sbjct: 81  EMGHWLGLLLSESGS 95

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 10/36 (27%), Positives = 13/36 (36%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERS 36
                 Y  +G ELL Q  P   Q      +  ER+
Sbjct: 205 AKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERA 240

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 6e-05
 Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 40/148 (27%)

Query: 92  AAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRN 151
            + G   +   GYL +   + +  WK  +FV+    +LY Y                   
Sbjct: 1   GSSGSSGSTMSGYLYRSKGSKKP-WKHLWFVIK-NKVLYTYAASE--------------- 43

Query: 152 SSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKN 211
                                  + +A      L  +   V  + S+ +    +      
Sbjct: 44  -----------------------DVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVF 80

Query: 212 YTLQAESALDQMDWIEKITGVIASLLSS 239
           Y  +A+ A     WI+       S  SS
Sbjct: 81  YVFKADDAHSTQRWIDAFQEGTVSGPSS 108

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 550 LHLACDSADIGMLELLLQYGANINATDSRGLTPLHRC 586
           L  A    D+  L  LLQ   N+NA +  G T L   
Sbjct: 5   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM 41

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 543 DLEGCTLLHLACDSADIG---MLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
                T LHLA  S D     +++ L+Q   N++    +G T LH C L   A   KLLL
Sbjct: 42  HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 101

Query: 600 TRGADPRAVNREGKTSLELAVESNFAD 626
              A     N  G+T L++A       
Sbjct: 102 RGKASIEIANESGETPLDIAKRLKHEH 128

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 12/73 (16%)

Query: 545 EGCTLLHLACDSA---DIGMLELLLQYGANINAT------DSRGLTPLHRCIL---RGKA 592
           +    LH  C++    DI  L      G ++              T LH  +    R   
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 593 MFAKLLLTRGADP 605
                L+    + 
Sbjct: 62  HIVDFLVQNSGNL 74

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 46/138 (33%)

Query: 99  TIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELG 156
           T + GYL+ R+    +   W R+F+     G L    +       +              
Sbjct: 5   TRKAGYLNARNKTGLVSSTWDRQFYFTQ-GGNLMSQARGDVAGGLAMD------------ 51

Query: 157 SGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYT--L 214
                                        + +   +  D  D R+CF+I S     +  L
Sbjct: 52  -----------------------------IDNCSVMAVDCEDRRYCFQITSFDGKKSSIL 82

Query: 215 QAESALDQMDWIEKITGV 232
           QAES  D  +WI  I  +
Sbjct: 83  QAESKKDHEEWICTINNI 100

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 546 GCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL 598
             T LH A +     ++ELL++YGA+++       T     I  G    A++L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS 239
           +  + L    +K+  D S     F I    + YTL+AES  ++  W++KI       + +
Sbjct: 78  KTPIFLNEVLVKLPTDPSGDEPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIET 137

Query: 240 QAPER 244
           +  +R
Sbjct: 138 EKKKR 142

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 36/185 (19%), Positives = 55/185 (29%), Gaps = 54/185 (29%)

Query: 90  QSAAKGKVQTIRQGYLSKRSSNLRGD-----WKRRFFVL----DSRGMLYYYRKQCSKSS 140
            S    K    + G+L K + N         +KRRFF L    D    L +Y+ +     
Sbjct: 9   ASLGSQKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE 68

Query: 141 GSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLR 200
             GS                         G V + K                       R
Sbjct: 69  PKGS------------------IFLDSCMGVVQNNK---------------------VRR 89

Query: 201 FCFRIISPTKN-YTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMGSGHHRSA 259
           F F +    K+ Y L A+S ++  +WI  +  ++     +   E+    S     H    
Sbjct: 90  FAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDS-----HEDDE 144

Query: 260 SDSSS 264
           S  SS
Sbjct: 145 SGPSS 149

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 12/82 (14%), Positives = 29/82 (35%)

Query: 159 LLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAES 218
           L++  L                    L    +    D   ++  F+++   ++   QAE+
Sbjct: 28  LMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQAEN 87

Query: 219 ALDQMDWIEKITGVIASLLSSQ 240
           A  + +W+E +     +L   +
Sbjct: 88  AKIKREWLEVLEETKRALSDKR 109

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 42/136 (30%)

Query: 102 QGYLSKRSSNLRGD-------WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSE 154
           +G+L+++      +       W   + V++    + +Y+   S +SG             
Sbjct: 2   EGFLNRKHEWEAHNKKASSRSWHNVYCVIN-NQEMGFYKDAKSAASGIPYHS-------- 52

Query: 155 LGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFC-FRIISPTKNYT 213
                                       V+L  +  +V  D    +      +S    Y 
Sbjct: 53  -------------------------EVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYL 87

Query: 214 LQAESALDQMDWIEKI 229
            QA+   +   WI+ I
Sbjct: 88  FQAKDDEEMNTWIQAI 103

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 3/31 (9%), Positives = 15/31 (48%)

Query: 1   MDAHLRYFKQGYELLHQMEPYINQVLTYAQQ 31
                 +  +  ++  ++E  ++++ T +Q+
Sbjct: 187 FATEQVFHNETAKIYSELEAIVDKLATESQR 217

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 34/120 (28%)

Query: 548 TLLHLACDSADIGMLELLLQYGANINATDS------------------------------ 577
            LL  +    +  +++ ++    + +  +                               
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 578 ---RGLTPLHRCILRGKAMFAKLLLTRGADPRAVN-REGKTSLELAVESNFADSEVLAIL 633
               G TPLH           K L+  GA   A+   + +T+ +   E     ++    L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 21/148 (14%), Positives = 39/148 (26%), Gaps = 42/148 (28%)

Query: 100 IRQGYLSKRSSNLRGD-------WKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNS 152
             +G L ++              W+  + VL    + +Y   + +               
Sbjct: 9   QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAAS-------------- 54

Query: 153 SELGSGLLSRWLSSHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KN 211
                                         V+L  +   V  D    +  F++     K 
Sbjct: 55  --------------------AGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKE 94

Query: 212 YTLQAESALDQMDWIEKITGVIASLLSS 239
           Y  QA+   +   W+  +   IAS  SS
Sbjct: 95  YLFQAKDEAEMSSWLRVVNAAIASGPSS 122

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 543 DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL 599
           D  G   +HLA       ++  L    ++++  D+RGLTPL   + RG      +L 
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	638
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	100.0
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.85
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.84
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.83
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.82
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.81
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.79
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.79
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.78
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.78
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.77
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.77
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.76
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.76
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.75
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.75
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.74
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.73
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.73
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.73
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.72
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.72
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.71
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.71
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.71
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.71
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.71
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.71
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.7
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.7
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.7
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.69
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.69
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.69
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.68
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.67
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.67
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.67
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.65
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.65
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.64
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.64
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.63
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.62
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.62
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.62
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.61
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.6
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.6
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.59
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.59
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.58
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.58
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.54
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.53
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.5
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.15
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	99.03
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	98.84
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	98.62
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	98.6
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.51
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	98.41
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	98.38
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	98.07
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.94
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	97.69
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	97.64
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	96.51
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	94.69
d1u5ka2	157	Recombinational repair protein RecO, C-terminal do	80.42

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-39  Score=282.75  Aligned_cols=118  Identities=47%  Similarity=0.825  Sum_probs=110.8

Q ss_pred             chHHHHHHcccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHH
Q 006616          306 EKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFAN  385 (638)
Q Consensus       306 ~~~~~~~~~~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n  385 (638)
                      +++++.|++.|||+.|||||+++|+|+|+|||||||++|||+||+||+|||+|||++||  .|+++++++|+.+||..+|
T Consensus         3 ~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld--~w~~~~i~~~~~~GN~~~n   80 (122)
T d1dcqa2           3 KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VLGTSELLLAKNIGNAGFN   80 (122)
T ss_dssp             HHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS--CCCGGGGHHHHHSCHHHHH
T ss_pred             HHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccC--CCCHHHHHHHHHHhHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999  7999999999999999999


Q ss_pred             HHHHhhhccccccccCCCCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhhhccC
Q 006616          386 SVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKYAEKLFVRK  446 (638)
Q Consensus       386 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~re~fI~~KY~~k~fv~~  446 (638)
                      ++||+.+++..                     ..||.++++...|++||++||++++|+.+
T Consensus        81 ~~~ea~~~~~~---------------------~~kp~~~~~~~~r~~fI~~KY~~k~f~~k  120 (122)
T d1dcqa2          81 EIMECCLPSED---------------------PVKPNPGSDMIARKDYITAKYMERRYARK  120 (122)
T ss_dssp             HHHTTTCCSSS---------------------CCSCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred             HHHHhhCCccc---------------------CcCCCCCccHHHHHHHHHHHHHhCccccc
Confidence            99999987621                     35899999999999999999999999865

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-22  Score=184.53  Aligned_cols=153  Identities=21%  Similarity=0.292  Sum_probs=135.4

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      +.+|+.|+..|+.+.|..+|...++|+|..+..+                     .++++  .+.. +....+..|+..+
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g---------------------~t~L~--~A~~-~~~~~v~~Ll~~~   58 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFG---------------------KTALQ--VMMF-GSTAIALELLKQG   58 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTS---------------------CCHHH--HSCT-TCHHHHHHHHHTT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCC---------------------Ccccc--cccc-ccccccccccccc
Confidence            3578999999999999988877899999988766                     23333  3333 3345667778889


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHH
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL  616 (638)
                      ++++..+..|.+||++|+..++.+++++++++|+++|.+|..|+||||+|+..|+.+++++|+ .|++++.+|.+|.|||
T Consensus        59 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL  137 (156)
T d1bd8a_          59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPL  137 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999887 7899999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHhhC
Q 006616          617 ELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lLle~  636 (638)
                      |+|+..|+  .+|+++|++|
T Consensus       138 ~~A~~~g~--~~iv~~Ll~h  155 (156)
T d1bd8a_         138 ELALQRGA--QDLVDILQGH  155 (156)
T ss_dssp             HHHHHSCC--HHHHHHHHTT
T ss_pred             HHHHHcCC--HHHHHHHHhh
Confidence            99999998  8999999987

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=8.6e-22  Score=181.11  Aligned_cols=128  Identities=27%  Similarity=0.363  Sum_probs=112.0

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|++|++.+|...+.+++ ..|+|++.....                                                
T Consensus         8 ~~L~~Av~~~dl~~l~~~~-~~g~d~~~~~~~------------------------------------------------   38 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAY-ADGVDLTEKIPL------------------------------------------------   38 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-HTTCCTTSBCCC------------------------------------------------
T ss_pred             HHHHHHHHhCCHHHHHHHH-HcCCCcCCCCCc------------------------------------------------
Confidence            5688999999999988766 668887643211                                                


Q ss_pred             CCCcCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCC
Q 006616          538 GQTMDDLEGCTLLHLACDS---ADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKT  614 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~T  614 (638)
                        ...+..|+||||+|+..   ++.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|.|
T Consensus        39 --~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  116 (154)
T d1dcqa1          39 --ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET  116 (154)
T ss_dssp             --SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             --ccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCC
Confidence              12245699999999975   6789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          615 SLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       615 pL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |||+|+..|+  .+++++|+++++
T Consensus       117 pL~~A~~~~~--~~i~~~L~~~~~  138 (154)
T d1dcqa1         117 PLDIAKRLKH--EHCEELLTQALS  138 (154)
T ss_dssp             HHHHHHHTTC--HHHHHHHHHHHT
T ss_pred             HHHHHHHcCC--HHHHHHHHHhCC
Confidence            9999999998  899999998653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-21  Score=190.49  Aligned_cols=107  Identities=28%  Similarity=0.359  Sum_probs=54.3

Q ss_pred             ccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Q 006616          526 SSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADP  605 (638)
Q Consensus       526 ~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~  605 (638)
                      ...+.+|+..|++++..|..|.||||+|+..++.+++++|+..|+++|.+|..|+||||+|+..|+.++|++||++|||+
T Consensus       116 ~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~  195 (223)
T d1uoha_         116 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI  195 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCC
Confidence            33444444445555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCccCCCCCHHHHHHHcCCCcHHHHHHHhh
Q 006616          606 RAVNREGKTSLELAVESNFADSEVLAILSD  635 (638)
Q Consensus       606 ~~~d~~g~TpL~~A~~~g~~d~eiv~lLle  635 (638)
                      +.+|.+|+||||+|. .|+  .+|+++|++
T Consensus       196 ~~~d~~g~tpl~~A~-~~~--~~i~~~Ll~  222 (223)
T d1uoha_         196 YIENKEEKTPLQVAK-GGL--GLILKRMVE  222 (223)
T ss_dssp             CCCCTTSCCHHHHCC-TTH--HHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHH-CCC--HHHHhcccC
Confidence            555555555555542 333  445555543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.9e-21  Score=189.71  Aligned_cols=178  Identities=20%  Similarity=0.184  Sum_probs=131.2

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccch-------hhHHHHHhhhhccccCCC-cc--------------
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISS-------LTLAKAMLLNEQTSLERS-SS--------------  515 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~-------~~l~~~ll~~~~~~~~~~-~~--------------  515 (638)
                      ..|+.|+..++.+ ++++|++.|+|+|..+..+..+.+       ..+++.++.......... ..              
T Consensus        47 TpL~~A~~~g~~~-iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (255)
T d1oy3d_          47 TALHLAAILGEAS-TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH  125 (255)
T ss_dssp             CHHHHHHHHTCHH-HHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------
T ss_pred             CccchHHhhcccc-cccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchH
Confidence            4688888887655 667788999999998877744333       244444433211100000 00              


Q ss_pred             --cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHhCCH
Q 006616          516 --SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINAT-DSRGLTPLHRCILRGKA  592 (638)
Q Consensus       516 --~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~  592 (638)
                        ................+...+.+++.+|.+|.||||+||..++.+++++|++++++.+.. +..|.||||+|+..|+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~  205 (255)
T d1oy3d_         126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA  205 (255)
T ss_dssp             ------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHH
Confidence              000001111222334455667788899999999999999999999999999999998864 56899999999999999


Q ss_pred             HHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          593 MFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       593 ~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +++++|+++|++++.+|.+|.||||+|+..++  .+++++|+++||
T Consensus       206 ~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~--~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         206 SVLELLLKAGADPTARMYGGRTPLGSALLRPN--PILARLLRAHGA  249 (255)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC--HHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC--HHHHHHHHHcCC
Confidence            99999999999999999999999999999998  899999999997

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.1e-21  Score=174.73  Aligned_cols=154  Identities=20%  Similarity=0.262  Sum_probs=135.9

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      +..|+.|+..|+.+.|. .|+++|+|||..+..+                     .++++  .+.. +...++.+|+..+
T Consensus         2 ~~~Lh~Aa~~g~~~~v~-~Ll~~g~d~n~~d~~g---------------------~TpL~--~A~~-~~~ei~~~Ll~~~   56 (156)
T d1ihba_           2 GNELASAAARGDLEQLT-SLLQNNVNVNAQNGFG---------------------RTALQ--VMKL-GNPEIARRLLLRG   56 (156)
T ss_dssp             HHHHHHHHHHTCHHHHH-HHTTSCCCTTCCCTTS---------------------CCHHH--HCCS-SCHHHHHHHHHTT
T ss_pred             hHHHHHHHHcCCHHHHH-HHHHCCCCcCccCCcc---------------------ccccc--cccc-ccccccccccccc
Confidence            45788999999987665 5668999999988766                     34443  3333 3456778888999


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCC-CCCCccCCCCCH
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGA-DPRAVNREGKTS  615 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~ga-d~~~~d~~g~Tp  615 (638)
                      ++++..+..|.++|+.++..+...+++.|+..+.+++..|..|.+|||+|+..++.+++++|+++|+ +++.+|.+|.||
T Consensus        57 a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~Tp  136 (156)
T d1ihba_          57 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA  136 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             cccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999876 899999999999


Q ss_pred             HHHHHHcCCCcHHHHHHHhhCC
Q 006616          616 LELAVESNFADSEVLAILSDSH  637 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lLle~g  637 (638)
                      ||+|+..++  .++|++|+++|
T Consensus       137 L~~A~~~~~--~~iv~~Ll~~G  156 (156)
T d1ihba_         137 CDLARLYGR--NEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTC--HHHHHHHHHTC
T ss_pred             HHHHHHcCC--HHHHHHHHhcC
Confidence            999999998  89999999987

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.6e-21  Score=185.49  Aligned_cols=155  Identities=23%  Similarity=0.273  Sum_probs=130.9

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..|+.+ ++++|+..+.++.......                       ...+..+.......++.+|+..++
T Consensus        39 TpLh~Aa~~g~~e-~~~~l~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~i~~~Ll~~~~   94 (223)
T d1uoha_          39 TALHWACSAGHTE-IVEFLLQLGVPVNDKDDAG-----------------------WSPLHIAASAGRDEIVKALLGKGA   94 (223)
T ss_dssp             CHHHHHHHHTCHH-HHHHHHHHTCCSCCCCTTC-----------------------CCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHhhhhc-ccccccccccccccccccc-----------------------cccccccccccccchhHHHhccCc
Confidence            4688888887765 5567778888776654433                       111122222334456677888899


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      +++..|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+..|++++.+|.+|.||||
T Consensus        95 d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~  174 (223)
T d1uoha_          95 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH  174 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHhhCCC
Q 006616          618 LAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|+..|+  .++|++|+++||
T Consensus       175 ~Aa~~g~--~~~v~~LL~~Ga  193 (223)
T d1uoha_         175 LACDEER--VEEAKLLVSQGA  193 (223)
T ss_dssp             HHHHTTC--HHHHHHHHHTTC
T ss_pred             cccccCc--HHHHHHHHHCCC
Confidence            9999998  899999999986

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4e-20  Score=157.01  Aligned_cols=96  Identities=24%  Similarity=0.495  Sum_probs=75.9

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      +.|+|||+|+++ ..++|++|||||. ++.|+||+....                                       ..
T Consensus         4 ~~KeG~L~K~~~-~~k~Wk~R~fvL~-~~~L~yy~~~~~---------------------------------------~~   42 (100)
T d1faoa_           4 GTKEGYLTKQGG-LVKTWKTRWFTLH-RNELKYFKDQMS---------------------------------------PE   42 (100)
T ss_dssp             TCEEEEEEEECS-SSCCEEEEEEEEE-TTEEEEESSTTC---------------------------------------SS
T ss_pred             ccEEEEEEEeCC-CCCCceEEEEEEE-CCEEEEEeccCC---------------------------------------cc
Confidence            469999999954 5778999999998 567788876432                                       12


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      +.+.|+|..|.+.......+++|||+|++++++|+|+|+|++|+++||++|+.+|..
T Consensus        43 ~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~r~~~l~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          43 PIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             CSEEEEGGGCCEEEEECSSSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CceEEechheEEEEeccccccccccccccCCeEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            335578877664433344567899999999999999999999999999999999853

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.6e-21  Score=168.37  Aligned_cols=118  Identities=20%  Similarity=0.198  Sum_probs=107.0

Q ss_pred             cccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCC-cHHHHHHHhCCHHH
Q 006616          516 SLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGL-TPLHRCILRGKAMF  594 (638)
Q Consensus       516 ~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~-TpLh~A~~~g~~~~  594 (638)
                      .|+.+...+...++..|+..|++++..|.+|.||||+|+ .|+.+++++|+++|+++|.+|..|. ||||+|+..|+.++
T Consensus         6 ~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~   84 (125)
T d1bi7b_           6 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDT   84 (125)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            345555566677888888999999999999999999775 7999999999999999999998876 69999999999999


Q ss_pred             HHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          595 AKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       595 v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      +++|+++|++++.+|..|.||||+|+..|+  .+++++|+.+
T Consensus        85 v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~--~~~v~~Llsa  124 (125)
T d1bi7b_          85 LVVLHRAGARLDVRDAWGRLPVDLAEELGH--RDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHTCCSSCCCTTCCCHHHHHHHHTC--HHHHHHHSSC
T ss_pred             cccccccccccccccCCCCCHHHHHHHcCC--HHHHHHHHhc
Confidence            999999999999999999999999999998  8999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=6.7e-20  Score=167.06  Aligned_cols=151  Identities=21%  Similarity=0.248  Sum_probs=124.7

Q ss_pred             cccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCC
Q 006616          456 VAHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGT  535 (638)
Q Consensus       456 ~~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~  535 (638)
                      +++.|+.|++.|+.+.| ++|++.|+++| .+..+                     .++++  .+........+..+...
T Consensus         2 ~~t~L~~Aa~~g~~~~v-~~LL~~ga~~~-~~~~g---------------------~t~L~--~a~~~~~~~~~~~~~~~   56 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEV-RILMANGAPFT-TDWLG---------------------TSPLH--LAAQYGHFSTTEVLLRA   56 (153)
T ss_dssp             HHHHHHHHHHHTCHHHH-HHHHHHTCCCC-CCTTC---------------------CCHHH--HHHHHTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHCCCHHHH-HHHHHcCCCcc-cccCC---------------------Ccccc--ccccccccccccccccc
Confidence            34679999999998766 55568999987 34444                     22222  22233334444556666


Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCH
Q 006616          536 SEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTS  615 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~Tp  615 (638)
                      .......+..+.++++.++...+.+++++|+.+|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|.||
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tp  136 (153)
T d1awcb_          57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCH
Confidence            66667777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCcHHHHHHH
Q 006616          616 LELAVESNFADSEVLAIL  633 (638)
Q Consensus       616 L~~A~~~g~~d~eiv~lL  633 (638)
                      ||+|+.+|+  .||+++|
T Consensus       137 l~~A~~~g~--~eiv~lL  152 (153)
T d1awcb_         137 FDISIDNGN--EDLAEIL  152 (153)
T ss_dssp             HHHHHHTTC--HHHHHHH
T ss_pred             HHHHHHcCC--HHHHHhC
Confidence            999999998  8999987

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=1.1e-19  Score=174.32  Aligned_cols=173  Identities=19%  Similarity=0.190  Sum_probs=133.6

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHH-------HHHhhhhcc----ccCCCcccccccccCCcc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLA-------KAMLLNEQT----SLERSSSSLTGNSSDRSS  526 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~-------~~ll~~~~~----~~~~~~~~l~~~~~~~~~  526 (638)
                      ..|+.|+..|+.+. +++|+..|+++|..+..+.........       .........    ...........+......
T Consensus        25 t~L~~A~~~g~~e~-v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
T d1ot8a_          25 TSLHLAARFARADA-AKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE  103 (209)
T ss_dssp             CHHHHHHHTTCHHH-HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCT
T ss_pred             CHHHHHHHcCCHHH-HHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            56888998887664 567779999999887666333222111       011110000    001111222233334444


Q ss_pred             cccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC
Q 006616          527 SGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPR  606 (638)
Q Consensus       527 ~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~  606 (638)
                      .....|...+++++..+..|.||||+|+..+...+++.|+..++++|..|..|.||||+|+..|+.++|++||++|||++
T Consensus       104 ~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         104 GMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE  183 (209)
T ss_dssp             THHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCC
Confidence            55566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCHHHHHHHcCCCcHHHHHHH
Q 006616          607 AVNREGKTSLELAVESNFADSEVLAIL  633 (638)
Q Consensus       607 ~~d~~g~TpL~~A~~~g~~d~eiv~lL  633 (638)
                      .+|..|.||||+|+..|+  .+||++|
T Consensus       184 ~~d~~g~Tpl~~A~~~~~--~~iv~lL  208 (209)
T d1ot8a_         184 ITDHMDRLPRDVASERLH--HDIVRLL  208 (209)
T ss_dssp             CCCTTSCCHHHHHHHTTC--HHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCC--HHHHhhc
Confidence            999999999999999998  8999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.4e-20  Score=164.60  Aligned_cols=115  Identities=24%  Similarity=0.337  Sum_probs=102.7

Q ss_pred             cccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHH
Q 006616          520 NSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL  599 (638)
Q Consensus       520 ~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl  599 (638)
                      +...+...++..|+..|+++|.+|.+|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+
T Consensus         8 A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll   87 (130)
T d1ycsb1           8 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV   87 (130)
T ss_dssp             HHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHH
Confidence            34444556777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCccC-CCCCHHHHH--HHcCCCcHHHHHHHhhC
Q 006616          600 TRGADPRAVNR-EGKTSLELA--VESNFADSEVLAILSDS  636 (638)
Q Consensus       600 ~~gad~~~~d~-~g~TpL~~A--~~~g~~d~eiv~lLle~  636 (638)
                      ++|++++..+. +|.||++++  +..|+  .+++++|++.
T Consensus        88 ~~ga~v~~~~~~~~~~~~~~~~a~~~g~--~eiv~~L~~~  125 (130)
T d1ycsb1          88 ESGAAVFAMTYSDMQTAADKCEEMEEGY--TQCSQFLYGV  125 (130)
T ss_dssp             HTTCCTTCCCSSSCCCHHHHCCSSSTTC--CCHHHHHHHH
T ss_pred             HcCCCcccccCCCCCCHHHHHHHHHcCh--HHHHHHHHhH
Confidence            99999998875 588998876  45576  6799999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=4.6e-21  Score=168.03  Aligned_cols=111  Identities=29%  Similarity=0.386  Sum_probs=99.5

Q ss_pred             ccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHH
Q 006616          519 GNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLL  598 (638)
Q Consensus       519 ~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lL  598 (638)
                      .+...+....+..|+..|++++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|
T Consensus         8 ~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~L   87 (118)
T d1myoa_           8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL   87 (118)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhh
Confidence            34556666778888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhh
Q 006616          599 LTRGADPRAVNREGKTSLELAVESNFADSEVLAILSD  635 (638)
Q Consensus       599 l~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle  635 (638)
                      +++|+|++.+|.+|.||||+|..      +.++.||+
T Consensus        88 l~~Gad~~~~d~~G~t~l~~a~~------~~i~~LL~  118 (118)
T d1myoa_          88 LSKGADKTVKGPDGLTALEATDN------QAIKALLQ  118 (118)
T ss_dssp             HTTCCCSSSSSSSTCCCCCTCSS------TTTGGGGC
T ss_pred             hcccccceeeCCCCCCHHHHHhH------HHHHHhcC
Confidence            99999999999999999998832      34555553

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.78  E-value=2.3e-19  Score=179.25  Aligned_cols=66  Identities=26%  Similarity=0.416  Sum_probs=58.5

Q ss_pred             CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          569 GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       569 gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      +.+++.+|..|+||||+|+..|+.++|++|+++|+|++.+|.+|.||||+|+..|+  .+||++|++.
T Consensus       211 ~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~--~~iv~lL~~c  276 (277)
T d2fo1e1         211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH--HNIVDIFDRC  276 (277)
T ss_dssp             CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC--HHHHHHHHTT
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHHh
Confidence            44444455778899999999999999999999999999999999999999999998  8999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.1e-19  Score=176.77  Aligned_cols=175  Identities=18%  Similarity=0.174  Sum_probs=135.2

Q ss_pred             cceecccccccchhhhhhhcccccCccccccch---hccch-------hhHHHHHhhhhcc-----ccCCCccccccccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQV---SCISS-------LTLAKAMLLNEQT-----SLERSSSSLTGNSS  522 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~---~~~~~-------~~l~~~ll~~~~~-----~~~~~~~~l~~~~~  522 (638)
                      ..|+.|+..|+.+ ++++|++.|+|+|..+...   ....+       ..+++.+......     ........+.....
T Consensus        36 TpL~~A~~~g~~~-iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  114 (229)
T d1ixva_          36 IPLHWSVSFQAHE-ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG  114 (229)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHcCCcc-ccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4688888887765 6678889999998755433   11111       2233332222111     11122333444455


Q ss_pred             CCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHhCCHHHHHHHHh-
Q 006616          523 DRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYG-ANINATDSRGLTPLHRCILRGKAMFAKLLLT-  600 (638)
Q Consensus       523 ~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~lLl~-  600 (638)
                      .....+...|+..+.+.+..|..|+||||+|+..|+.+++++|++.| .++|.+|..|+||||+|+..|+.++|++||+ 
T Consensus       115 ~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  194 (229)
T d1ixva_         115 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK  194 (229)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHh
Confidence            55666777888999999999999999999999999999999999987 6899999999999999999999999999997 


Q ss_pred             CCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          601 RGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       601 ~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .|++++.+|.+|.||||+|+.     .+++++|+++|+
T Consensus       195 ~gad~~~~d~~g~t~l~~A~~-----~~~~~~Ll~~g~  227 (229)
T d1ixva_         195 YGAEYDLVDNKGAKAEDVALN-----EQVKKFFLNNVV  227 (229)
T ss_dssp             HCCCSCCCCTTSCCTGGGCSC-----HHHHHHHHHHCC
T ss_pred             cCCCCCCcCCCCCCHHHHHhh-----HHHHHHHHHcCC
Confidence            599999999999999999862     579999999986

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=153.59  Aligned_cols=94  Identities=29%  Similarity=0.501  Sum_probs=70.9

Q ss_pred             cceeEEEEEEeecCC--CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           97 VQTIRQGYLSKRSSN--LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~--~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      +.+.|+|||+||++.  ..+.|+||||||+ ++.|+||+.....                                    
T Consensus         3 ~~~~k~G~L~k~~~~g~~~k~W~kRwfvL~-~~~L~y~~~~~~~------------------------------------   45 (101)
T d2elba2           3 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQ-GGNLMSQARGDVA------------------------------------   45 (101)
T ss_dssp             CCSCCEEEEEECSCCC----CCCEEEEEEE-TTEEEEECTTCCC------------------------------------
T ss_pred             CCccEeEEEEEeccCCCCccccEEEEEEEe-CCEEEEEccCCcc------------------------------------
Confidence            446799999999643  4678999999998 6788888664332                                    


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                          +...|+|..|+|+.. ++.+++|||+|++++  ++|+|+|+|++|+++||.||+++
T Consensus        46 ----~~~~i~l~~~~v~~~-~~~~~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          46 ----GGLAMDIDNCSVMAV-DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             ----E----EEEECCCCCC-CCCCSSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             ----cceEEEecccccccc-cccCCcceEEEEeecccceEEEECCCHHHHHHHHHHHHhc
Confidence                223467778888864 455789999999865  79999999999999999999864

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.3e-19  Score=155.45  Aligned_cols=102  Identities=18%  Similarity=0.300  Sum_probs=74.1

Q ss_pred             CcceeEEEEEEeecCCCCCCceeeEEEEecCceE-EEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           96 KVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGML-YYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l-~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      ...+.|+|||+|++++.++.|+||||||.+++++ ||+.....                                     
T Consensus         5 ~~~~~~~G~L~K~g~~~~k~WkkRwfvL~~~~~~~yy~~~~~~-------------------------------------   47 (126)
T d1wi1a_           5 SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYRE-------------------------------------   47 (126)
T ss_dssp             CCCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCS-------------------------------------
T ss_pred             CCCCcEEEEEEEECCCCCCCceEEEEEEeCCceEEEEEccccc-------------------------------------
Confidence            4456899999999777778999999999876654 44444322                                     


Q ss_pred             ccccccceeecccceeecC---CCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVD---ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~---~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ....+.+.|.+..+.+...   .....++++|.|.++.++|+|+|+|++|+++||++|+.++.
T Consensus        48 ~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~~~r~~~f~A~s~~e~~~Wv~al~~a~~  110 (126)
T d1wi1a_          48 KKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             SSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ccccceeeeeeceeeeeeccccccccccceeEEeccCCeEEEEEECCHHHHHHHHHHHHHHHH
Confidence            1122334455655544321   22334568899999999999999999999999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=8e-19  Score=177.06  Aligned_cols=163  Identities=22%  Similarity=0.236  Sum_probs=115.9

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccc-------hhhHHHHHhhhhcccc---CCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCIS-------SLTLAKAMLLNEQTSL---ERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~-------~~~l~~~ll~~~~~~~---~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..|+.+.|. +|+++|+|||..+..+.++.       +..++++|+..+....   .....++..+.......
T Consensus        42 t~l~~A~~~G~~~~v~-~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~  120 (291)
T d1s70b_          42 AVFLAACSSGDTEEVL-RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD  120 (291)
T ss_dssp             HHHHHHHHHTCHHHHH-HHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHcCCHHHHH-HHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccc
Confidence            5689999999988775 55589999999988774443       3466666665443211   12233344444445555


Q ss_pred             ccccccCCCCCCCcCC------------------------------------------------------------CCCC
Q 006616          528 GSLNLAGTSEGQTMDD------------------------------------------------------------LEGC  547 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d------------------------------------------------------------~~G~  547 (638)
                      ....|+..++..+..|                                                            ..|.
T Consensus       121 ~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  200 (291)
T d1s70b_         121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG  200 (291)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred             hhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCC
Confidence            6666777776554433                                                            4566


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHH
Q 006616          548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVE  621 (638)
Q Consensus       548 TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~  621 (638)
                      ||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++||++|||++.+|..|.||||+|++
T Consensus       201 t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             ChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            77788888888888888888888888888888888888888888888888888888888888888888888753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=4.5e-19  Score=155.12  Aligned_cols=90  Identities=23%  Similarity=0.258  Sum_probs=87.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCc
Q 006616          547 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFAD  626 (638)
Q Consensus       547 ~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d  626 (638)
                      .|||++|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+  
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~--   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH--   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC--
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCc--
Confidence            489999999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             HHHHHHHhhCCC
Q 006616          627 SEVLAILSDSHG  638 (638)
Q Consensus       627 ~eiv~lLle~ga  638 (638)
                      .++|++|+++||
T Consensus        81 ~~~v~~Ll~~Ga   92 (118)
T d1myoa_          81 VSCVKLLLSKGA   92 (118)
T ss_dssp             CHHHHHHHTTCC
T ss_pred             hhhhhhhhcccc
Confidence            789999999986

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.4e-18  Score=145.34  Aligned_cols=92  Identities=16%  Similarity=0.343  Sum_probs=73.6

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      ||+|||+|+++...+.|+||||+|+ ++.|+||+++..                                       ..+
T Consensus         2 ik~G~L~K~~~~~~~~W~kr~fvL~-~~~L~~~~~~~~---------------------------------------~~~   41 (102)
T d2coda1           2 VKSGWLDKLSPQGKRMFQKRWVKFD-GLSISYYNNEKE---------------------------------------MYS   41 (102)
T ss_dssp             CEEEEEEECCSSSSSCCEEEEEEEC-SSEEEEEESSCC---------------------------------------SSC
T ss_pred             cEEEEEEEECCCCCCCceEEEEEEE-CCEEEEEeccCc---------------------------------------cee
Confidence            6999999997666778999999998 677788776532                                       122


Q ss_pred             cceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      .+.|+|..+.+...    +++|||.|.+++++|+|+|+|++|+++||.+|+.+|..
T Consensus        42 ~~~i~L~~~~~~~~----~~~~~f~i~~~~~~~~l~a~s~~e~~~Wi~ai~~~i~~   93 (102)
T d2coda1          42 KGIIPLSAISTVRV----QGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS   93 (102)
T ss_dssp             CCEEETTTEEEEEE----ETTTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEchhceeecc----ccceeEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            34566766554432    45799999999999999999999999999999999865

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-18  Score=154.98  Aligned_cols=89  Identities=21%  Similarity=0.318  Sum_probs=86.7

Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcH
Q 006616          548 TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADS  627 (638)
Q Consensus       548 TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~  627 (638)
                      ++||.||..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+  .
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~--~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN--V   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC--H
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhH--H
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999998  9


Q ss_pred             HHHHHHhhCCC
Q 006616          628 EVLAILSDSHG  638 (638)
Q Consensus       628 eiv~lLle~ga  638 (638)
                      ++|++|+++||
T Consensus        81 ~~v~~Ll~~ga   91 (130)
T d1ycsb1          81 QVCKFLVESGA   91 (130)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            99999999986

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-18  Score=153.67  Aligned_cols=98  Identities=21%  Similarity=0.421  Sum_probs=71.8

Q ss_pred             eEEEEEEe---------ecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCC
Q 006616          100 IRQGYLSK---------RSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG  170 (638)
Q Consensus       100 ~k~GyL~K---------r~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  170 (638)
                      .|+|||++         +.+..++.|++|||||+ ++.|+||+.......                              
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~-~~~L~~y~~~~~~~~------------------------------   50 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLR-GHSLYLYKDKREQTT------------------------------   50 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEE-TTEEEEESCTTCC--------------------------------
T ss_pred             CceEEEEeeccccccccccCCCCCCceEEEEEEe-CCEEEEEeccccccc------------------------------
Confidence            38999984         44445678999999998 688888876543211                              


Q ss_pred             CCCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          171 GVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       171 ~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                           ...+...|+|..|.+....+...++|||.|++++++|+|+|+|++|+++||.+|+.++
T Consensus        51 -----~~~~~~~i~L~~~~v~~~~~~~~r~~~F~i~~~~~~~~f~A~s~~e~~~Wi~ai~~a~  108 (133)
T d2j59m1          51 -----PSEEEQPISVNACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESS  108 (133)
T ss_dssp             -----------CEECSSCEEEECSSSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             -----cccccccceecceEEEEcccccccCceeEEecCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence                 1123445888889888766667789999999999999999999999999999998875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-18  Score=167.88  Aligned_cols=94  Identities=30%  Similarity=0.416  Sum_probs=83.7

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHH
Q 006616          542 DDLEGCTLLHLACDSADIGMLELLLQYGANINATD-SRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV  620 (638)
Q Consensus       542 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~  620 (638)
                      ....|.||||.|+..++.+++++|+..|+.++..+ ..|+||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~  186 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW  186 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT
T ss_pred             cccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHH
Confidence            44557888888888888888899999999888766 46999999999999999999999999999999999999999999


Q ss_pred             HcCCCcHHHHHHHhhCC
Q 006616          621 ESNFADSEVLAILSDSH  637 (638)
Q Consensus       621 ~~g~~d~eiv~lLle~g  637 (638)
                      ..++  .+++++|++.+
T Consensus       187 ~~~~--~~~~~~l~~~~  201 (221)
T d1iknd_         187 GRPS--TRIQQQLGQLT  201 (221)
T ss_dssp             TSSC--HHHHHHHHTTS
T ss_pred             HCCC--HHHHHHHHHcC
Confidence            9987  89999998764

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.1e-18  Score=153.17  Aligned_cols=105  Identities=24%  Similarity=0.387  Sum_probs=77.8

Q ss_pred             CCcceeEEEEEEeecCCC-----CCCceeeEEEEecCc----eEEEEecCCCCCCCCCCccccccCcCcccCCccccccc
Q 006616           95 GKVQTIRQGYLSKRSSNL-----RGDWKRRFFVLDSRG----MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLS  165 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~-----~~~WkrRwfvL~~~~----~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~  165 (638)
                      ....++|+|||+|++...     .+.|+||||||+.++    .|.||.....                            
T Consensus        14 ~~~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~----------------------------   65 (150)
T d1wg7a_          14 QKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI----------------------------   65 (150)
T ss_dssp             CSCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC----------------------------
T ss_pred             CCCCEeEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEecccc----------------------------
Confidence            345678999999996442     368999999998643    4556554321                            


Q ss_pred             cccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          166 SHYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                                ...+.+.|.|..|++.... +.+++|||.|++++ ++|+|+|+|++|+++||.+|+.+|.....
T Consensus        66 ----------~~~~~g~i~l~~~~~~~~~-~~~~~~~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~~~  128 (150)
T d1wg7a_          66 ----------SKEPKGSIFLDSCMGVVQN-NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFE  128 (150)
T ss_dssp             ----------SSCCSEEECTTTCCEECCC-CSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------ccccccccccccccccccC-ccccceEEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHHhhhh
Confidence                      1123455777777776543 44678999999886 79999999999999999999999865543

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=4.5e-18  Score=144.27  Aligned_cols=95  Identities=24%  Similarity=0.506  Sum_probs=72.6

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      +|+|||+|++. ..+.|++|||+|. ++.|+||+++..                                       ..+
T Consensus         2 iK~G~L~k~~~-~~k~W~kR~fvL~-~~~L~yy~~~~~---------------------------------------~~~   40 (101)
T d2fjla1           2 IKNGILYLEDP-VNHEWYPHYFVLT-SSKIYYSEETSS---------------------------------------DLL   40 (101)
T ss_dssp             CEEEEEEEEET-TTTEEEEEEEEEE-TTEEEECCCCSC---------------------------------------TCC
T ss_pred             ceEEEEEEEcC-CCCCCeEEEEEEE-CCEEEEEecccc---------------------------------------cee
Confidence            69999999954 5678999999998 456677755322                                       123


Q ss_pred             cceeecccceeecCCC-CCCCcceEEEecCC---eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIKVDAD-QSDLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~-~~~rr~cF~I~t~~---rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      .+.|.|..|+|...++ ...++|||.|+++.   ++|+|+|+|++|+.+||.||+.++.+
T Consensus        41 ~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~~~  100 (101)
T d2fjla1          41 RGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT  100 (101)
T ss_dssp             CEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             cceEEcCCceeEeeeeecccccceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            3456777777765433 33567999999874   68999999999999999999998753

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.9e-18  Score=146.49  Aligned_cols=93  Identities=18%  Similarity=0.370  Sum_probs=66.2

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ++|+|||.|+++. .++|+||||||++ +.|+||+++.+ .|.|                                    
T Consensus         1 ~lk~GwL~k~~~~-~~~wkkRwFvL~~-~~L~YYk~~~~~~p~g------------------------------------   42 (112)
T d2coaa1           1 TLREGWVVHYSNK-DTLRKRHYWRLDC-KCITLFQNNTTNRYYK------------------------------------   42 (112)
T ss_dssp             CSEEEEEEECCSS-SCCCEEEEEEECS-SEEEEESSSSCSSCSE------------------------------------
T ss_pred             CceEEEEEEECCC-CCCeeEEEEEEEc-ceEEEEeccCCCccce------------------------------------
Confidence            4799999999654 6789999999984 56777766533 2333                                    


Q ss_pred             cccceeecccc-eeecC-----CCCCCCcceEEEecCCeeEEEEe-----------CCHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTS-TIKVD-----ADQSDLRFCFRIISPTKNYTLQA-----------ESALDQMDWIEKITGVI  233 (638)
Q Consensus       178 ~~~~~i~l~~~-~v~~~-----~~~~~rr~cF~I~t~~rt~~lqA-----------~se~e~~~Wi~ai~~~i  233 (638)
                          .|.|..+ .+...     .....++|||+|+|++|+|+|.|           ++++++++||+||++|+
T Consensus        43 ----~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          43 ----EIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             ----EEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             ----EEeeeccccccccccccccccCCCccEEEEEeCCeEEEEecCCccccccccccChHHHHHHHHHHHHhh
Confidence                3344221 22211     11234679999999999999966           77889999999999874

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.9e-17  Score=142.33  Aligned_cols=99  Identities=23%  Similarity=0.421  Sum_probs=75.3

Q ss_pred             CCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      +...++|+|||+|+++. .+.|+||||||+ ++.|+||+.....                                    
T Consensus         4 ~~~~~~~~G~L~k~~~~-~~~W~kr~~vL~-~~~L~~~k~~~~~------------------------------------   45 (109)
T d1wgqa_           4 GSSGSTMSGYLYRSKGS-KKPWKHLWFVIK-NKVLYTYAASEDV------------------------------------   45 (109)
T ss_dssp             CCCSCSCEEEEEEESST-TSCCEEEEEEEE-TTEEEEESCTTCS------------------------------------
T ss_pred             CCCCCcEEEEEEEECCC-CCCceEEEEEEe-CCEEEEecccccc------------------------------------
Confidence            34567899999999654 568999999998 5667777664321                                    


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                         .+...|.|..+.+....+..+++|+|.|++++ ++|+|+|+|++|+++||.+|+.+|.
T Consensus        46 ---~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~f~a~s~~~~~~Wi~ai~~a~~  103 (109)
T d1wgqa_          46 ---AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             ---SCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             ---ccccccccceeeeeecccccccceeeeeecccceEEEEECCCHHHHHHHHHHHHHHhc
Confidence               12233666666655545566788999999876 6799999999999999999999873

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4e-18  Score=179.83  Aligned_cols=151  Identities=22%  Similarity=0.283  Sum_probs=125.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..++... ++.+...+.+++..+..+.                       .++..+.......+..+|+..|+
T Consensus       233 t~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~g~-----------------------~~l~~a~~~~~~~i~~~Ll~~g~  288 (408)
T d1n11a_         233 TPLHLAAQEGHAEM-VALLLSKQANGNLGNKSGL-----------------------TPLHLVAQEGHVPVADVLIKHGV  288 (408)
T ss_dssp             CHHHHHHHTTCHHH-HHHHHTTTCCTTCCCTTCC-----------------------CHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             CHHHHHHHhCcHhH-hhhhhccccccccccCCCC-----------------------ChhhhhhhcCcHHHHHHHHHCCC
Confidence            45667777776554 4556678888887765541                       11222222334456667788899


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHH
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLE  617 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~  617 (638)
                      +++..+..+.||||.|+..++.+++++++++|+++|.+|..|.||||+|+..|+.++|++||++||+++.+|.+|.||||
T Consensus       289 ~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~  368 (408)
T d1n11a_         289 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA  368 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred             ccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCcHHHHHHHh
Q 006616          618 LAVESNFADSEVLAILS  634 (638)
Q Consensus       618 ~A~~~g~~d~eiv~lLl  634 (638)
                      +|++.|+  .++|++|.
T Consensus       369 ~A~~~~~--~~iv~~L~  383 (408)
T d1n11a_         369 IAKRLGY--ISVTDVLK  383 (408)
T ss_dssp             HHHHTTC--HHHHHHHH
T ss_pred             HHHHcCC--HHHHHHHH
Confidence            9999999  88888664

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=142.41  Aligned_cols=98  Identities=29%  Similarity=0.667  Sum_probs=73.1

Q ss_pred             eeEEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           99 TIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        99 ~~k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ++|+|||+|++.+   ..+.|+||||||. ++.|+||+....                                      
T Consensus         1 vik~G~L~k~~~~~~~~~~~Wkkr~~vL~-~~~L~y~~~~~~--------------------------------------   41 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVS-RGLFYYYANEKS--------------------------------------   41 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCEEEEEEEEEEE-TTEEEEESSTTC--------------------------------------
T ss_pred             CeEEEEEEEECCCCCCCcCCcEEEEEEEE-CCEEEEEecccc--------------------------------------
Confidence            5799999998654   3457999999998 566777765432                                      


Q ss_pred             cccccceeecccceeecC---CCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKVD---ADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~---~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                       ..+.+.|+|..+.+...   .+..+++|||.|.+++ ++|+|+|+|++|+++||++|+.+|+.+
T Consensus        42 -~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~ai~~~i~~l  105 (106)
T d1u5da1          42 -KQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL  105 (106)
T ss_dssp             -SSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccccccCCceEeeccccccccCCceeEEEEcCCCcEEEEEeCCHHHHHHHHHHHHHHHHHc
Confidence             11234456665554432   2334668999999975 799999999999999999999999753

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5e-18  Score=149.94  Aligned_cols=119  Identities=18%  Similarity=0.104  Sum_probs=101.1

Q ss_pred             ccceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCC
Q 006616          457 AHQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       457 ~~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      ...|+.|+..|+.+.| ++|++.|+|||..+..+                     .++  ++++. .+...++.+|+..|
T Consensus         4 ~~~L~~Aa~~G~~~~v-~~Ll~~gad~n~~~~~g---------------------~t~--l~~a~-~g~~~~v~~Ll~~g   58 (125)
T d1bi7b_           4 ADWLATAAARGRVEEV-RALLEAGANPNAPNSYG---------------------RRP--IQVMM-MGSARVAELLLLHG   58 (125)
T ss_dssp             TTHHHHHHHHTCHHHH-HHHHTTTCCTTCCCSSS---------------------CCT--TTSSC-TTCHHHHHHHHTTT
T ss_pred             hhHHHHHHHCCCHHHH-HHHHHcCCccccccccc---------------------ccc--ccccc-cccccccccccccc
Confidence            4578999999997755 55668999999887665                     232  33333 34567788899999


Q ss_pred             CCCCcCCCCCC-cHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHh
Q 006616          537 EGQTMDDLEGC-TLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLT  600 (638)
Q Consensus       537 ~~~~~~d~~G~-TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~  600 (638)
                      ++++..|..|. ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        59 a~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          59 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999998876 69999999999999999999999999999999999999999999999999975

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.5e-17  Score=141.88  Aligned_cols=100  Identities=29%  Similarity=0.574  Sum_probs=72.8

Q ss_pred             CCCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           94 KGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        94 ~~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      .+...++|+|||+|++. ..+.|+||||+|+ ++.|+||+++...                                   
T Consensus         3 ~g~s~~~k~G~L~K~~~-~~k~WkkR~fvL~-~~~l~y~~~~~~~-----------------------------------   45 (118)
T d1v89a_           3 SGSSGPIKMGWLKKQRS-IVKNWQQRYFVLR-AQQLYYYKDEEDT-----------------------------------   45 (118)
T ss_dssp             CSSSCEEEEEEEEEECS-SSSCEEEEEEEEE-TTEEEEESSSSCC-----------------------------------
T ss_pred             CCCCCCeEEEEEEEECC-CCCCcEEEEEEEE-CCEEEEecccCcc-----------------------------------
Confidence            35577899999999954 4678999999998 5677887665331                                   


Q ss_pred             Cccccccceeecccceeec--CCCCCCCcceEEEecCC--------eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKV--DADQSDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~--~~~~~~rr~cF~I~t~~--------rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                          .+...+.|..+.+..  .......+|||+|.++.        ++|+|+|++++|+++||++|+.++.
T Consensus        46 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~  112 (118)
T d1v89a_          46 ----KPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             ----SCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ----cccceeccCceEEEEeccccccCCCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHc
Confidence                112234444444332  12334568999998764        5799999999999999999999864

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.7e-18  Score=168.66  Aligned_cols=158  Identities=25%  Similarity=0.311  Sum_probs=126.5

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..++.. ++++|++.|+|++..+...                  ..+.|+++++  ...+...++.+|+..|+
T Consensus        11 t~Lh~A~~~~~~~-~v~~Ll~~~a~~~~i~~~~------------------~~g~TpL~~A--~~~g~~~iv~~Ll~~ga   69 (255)
T d1oy3d_          11 TALHLAVIHQHEP-FLDFLLGFSAGHEYLDLQN------------------DLGQTALHLA--AILGEASTVEKLYAAGA   69 (255)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHHHHTTSGGGGCCC------------------TTSCCHHHHH--HHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHH-HHHHHHHcCCCcccccCcC------------------CCCCCccchH--Hhhcccccccccccccc
Confidence            5688888888775 5567779999965443222                  1123444443  34456667788889999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCC-----------------------------------------------
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQYGA-----------------------------------------------  570 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-----------------------------------------------  570 (638)
                      +++..|.+|.||||+|+..++.+++++|++.+.                                               
T Consensus        70 ~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
T d1oy3d_          70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (255)
T ss_dssp             CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             cccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCc
Confidence            999999999999999999999999999876432                                               


Q ss_pred             CCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCc-cCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          571 NINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAV-NREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       571 dvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~-d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +++.+|..|.||||+|+..++.+++++|++++++.+.. +..|.||||+|+..|+  .++|++|+++||
T Consensus       150 ~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~--~~~v~~Ll~~ga  216 (255)
T d1oy3d_         150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA--ASVLELLLKAGA  216 (255)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             ccccccccCcccccccccccccccccchhcccccccccccccccccccccccccH--HHHHHHHHHCCC
Confidence            12345778999999999999999999999999998864 6789999999999997  999999999985

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.7e-17  Score=146.00  Aligned_cols=97  Identities=23%  Similarity=0.402  Sum_probs=72.9

Q ss_pred             CCcceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCC
Q 006616           95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHD  174 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  174 (638)
                      +...++|+|||.|+ + .++.|+||||||. ++.|+||+++..                                     
T Consensus         4 ~~~~~~~~GwLkk~-~-~~k~WkkRwfvL~-~~~L~yyk~~~~-------------------------------------   43 (130)
T d1v88a_           4 GSSGIVMADWLKIR-G-TLKSWTKLWCVLK-PGVLLIYKTQKN-------------------------------------   43 (130)
T ss_dssp             SSSSCCEEEEEEEC-C-SSSSCEEEEEEEE-TTEEEEESCSSS-------------------------------------
T ss_pred             CCCCCeEeCeEEeC-C-CCCCceEEEEEEe-CCEEEEEcCCCC-------------------------------------
Confidence            45678999999666 3 3678999999998 678888876532                                     


Q ss_pred             ccccccceeecccceeecCCCCCCCcceEEEecCC------------------------eeEEEEeCCHHHHHHHHHHHH
Q 006616          175 EKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT------------------------KNYTLQAESALDQMDWIEKIT  230 (638)
Q Consensus       175 ~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~------------------------rt~~lqA~se~e~~~Wi~ai~  230 (638)
                        ..+.+.|.|..+.+...+.. .++|||+|.++.                        +.|+|+|+|++|+++||++|+
T Consensus        44 --~~~~g~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~  120 (130)
T d1v88a_          44 --GQWVGTVLLNACEIIERPSK-KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE  120 (130)
T ss_dssp             --CCCCEEEECSSCEECCCCTT-TSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHH
T ss_pred             --CcceeEEECCCeEEEEcccc-CCCceEEEEcCCCcceecccCcccccceeEEecCCcEEEEEECCCHHHHHHHHHHHH
Confidence              12344577877777654433 557899987642                        236899999999999999999


Q ss_pred             HHHH
Q 006616          231 GVIA  234 (638)
Q Consensus       231 ~~i~  234 (638)
                      .+|.
T Consensus       121 ~~i~  124 (130)
T d1v88a_         121 LALK  124 (130)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            9884

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=9.2e-18  Score=161.88  Aligned_cols=99  Identities=22%  Similarity=0.558  Sum_probs=76.6

Q ss_pred             cceeEEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           97 VQTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ..++|+|||+|++.+   ..+.|+||||||. ++.|+||++...                                    
T Consensus       102 ~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~-~~~L~yy~~~~~------------------------------------  144 (209)
T d1u5ea1         102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALS-KTVFYYYGSDKD------------------------------------  144 (209)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEE-TTEEEEESSTTC------------------------------------
T ss_pred             CCeeEEEEEEEecCCCCCccccceEEEEEEE-CCEEEEEecCCC------------------------------------
Confidence            457899999999643   4578999999998 677777776532                                    


Q ss_pred             CccccccceeecccceeecCC---CCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDA---DQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~---~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                         ..+.+.|+|..|.+....   .+..++|||.|++++ |+|+|+|+|++|+++||.+|+.+|+.
T Consensus       145 ---~~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~f~a~s~~e~~~Wi~al~~~i~~  207 (209)
T d1u5ea1         145 ---KQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQD  207 (209)
T ss_dssp             ---SSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ---CccceEEEecceeeeeccccccccCCCcEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence               123355777777665322   233568999999986 89999999999999999999999975

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1e-17  Score=142.48  Aligned_cols=95  Identities=21%  Similarity=0.376  Sum_probs=71.5

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCc------eEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRG------MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV  172 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~------~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  172 (638)
                      ++|+|||.|+     +.|+||||||.+.+      .|+||++.....                                 
T Consensus         2 v~k~GyL~K~-----k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~---------------------------------   43 (103)
T d1qqga1           2 VRKVGYLRKP-----KSMHKRFFVLRAASEAGGPARLEYYENEKKWR---------------------------------   43 (103)
T ss_dssp             EEEEEEEECT-----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHH---------------------------------
T ss_pred             cceeEEEEEc-----CCCCEEEEEEecccccCCccEEEEEcchhhhh---------------------------------
Confidence            5799999987     46999999998754      578887542200                                 


Q ss_pred             CCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHH
Q 006616          173 HDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       173 ~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                       .....+.+.|+|..|......+..+++|||+|++++++|+|+|+|++|+++||+||+..
T Consensus        44 -~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~t~~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          44 -HKSSAPKRSIPLESCFNINKRADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             -TTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             -cccccccceEecceeeEEeecccCCCceEEEEEeCCeEEEEEcCCHHHHHHHHHHHHhh
Confidence             01123344577777655444455677899999999999999999999999999999863

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.5e-17  Score=138.10  Aligned_cols=97  Identities=28%  Similarity=0.490  Sum_probs=73.0

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++++|||+|+++...+.|+||||+|. ++.|+||.+...                                       
T Consensus         7 ~~~~~~G~L~k~~~~~~k~W~kr~~vL~-~~~L~~y~~~~~---------------------------------------   46 (107)
T d1upqa_           7 LPVHIRGWLHKQDSSGLRLWKRRWFVLS-GHCLFYYKDSRE---------------------------------------   46 (107)
T ss_dssp             SCEEEEEEEEEECSSSSCCEEEEEEEEE-TTEEEEESSTTC---------------------------------------
T ss_pred             CceeEEEEEEEeCCCCCCCeeEEEEEEE-CCEEEEecCccc---------------------------------------
Confidence            4468999999997766788999999998 566666655422                                       


Q ss_pred             ccccceeecccceeecC--CCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVD--ADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~--~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ..+...+.|..+.+...  .....++|||.|.+++ ++|+|+|+|++|+++||++|+.|.
T Consensus        47 ~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          47 ESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             CSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccccceecccceEEEEeccCcccCcceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            11223466666666532  2334567999999885 799999999999999999999875

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.9e-17  Score=138.37  Aligned_cols=93  Identities=17%  Similarity=0.262  Sum_probs=71.2

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCc--eEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRG--MLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~--~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ++.|||.++.++  ++|+||||||++++  +||||+.+.+                                       .
T Consensus         2 ~~~G~L~~~~~~--k~W~krwfvL~~~~~~~ly~~~~~~~---------------------------------------~   40 (99)
T d2coca1           2 LLCGPLRLSESG--ETWSEVWAAIPMSDPQVLHLQGGSQD---------------------------------------G   40 (99)
T ss_dssp             SSEEEEEEESSS--SCEEEEEEECCTTCTTCEEEECCTTC---------------------------------------S
T ss_pred             ceEEEEEccCCC--CCccEEEEEEecCCccEEEEECcCcc---------------------------------------c
Confidence            468999999543  68999999998654  6788776432                                       1


Q ss_pred             cccceeecccceeecC--CCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVD--ADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~--~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      .+.+.|.|..+.+...  ....+++|||.|.+++++|+|+|+|++|+++||++|+.|.
T Consensus        41 ~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          41 RLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             SSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cccccccccceeeeecccccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHHHhc
Confidence            2334566666665532  2234678999999999999999999999999999999875

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3e-17  Score=141.70  Aligned_cols=96  Identities=16%  Similarity=0.308  Sum_probs=72.1

Q ss_pred             ceeEEEEEEeecCCC-CCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           98 QTIRQGYLSKRSSNL-RGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~-~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      .++|+|||.|++++. ++.|+||||||+ ++.|+||++...                                       
T Consensus         2 ~vik~GwL~k~~~~~~~~~WkkRwFvL~-~~~L~yyk~~~~---------------------------------------   41 (111)
T d2dyna_           2 LVIRKGWLTINNIGIMKGGSKEYWFVLT-AENLSWYKDDEE---------------------------------------   41 (111)
T ss_dssp             CEEEEEEEEETTCCTTTTSSEEEEEEEE-SSEEEEESSTTC---------------------------------------
T ss_pred             eEEEEeeEEEECCCCCcCCceEEEEEEE-CCEEEEEcchhh---------------------------------------
Confidence            368999999997664 567999999998 678888877532                                       


Q ss_pred             ccccceeecccceeec-CCCCCCCcceEEEecCC--------eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKV-DADQSDLRFCFRIISPT--------KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~-~~~~~~rr~cF~I~t~~--------rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ..+.+.|.|..+.|.. ......++|||+|.++.        ++|+|+|+|++|+.+||.||..|.
T Consensus        42 ~~~~~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          42 KEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             CCEEEEEECTTEEEEEECCCSTTCSEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             cccccccccccceeEeeccccccccccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHhc
Confidence            1233446665555543 22334678999998753        689999999999999999998763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.6e-17  Score=163.76  Aligned_cols=103  Identities=26%  Similarity=0.299  Sum_probs=85.8

Q ss_pred             CCCCCCCcCCCCCCcHHHHHHHhC----CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCCc
Q 006616          534 GTSEGQTMDDLEGCTLLHLACDSA----DIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTR-GADPRAV  608 (638)
Q Consensus       534 ~~~~~~~~~d~~G~TpLh~Aa~~g----~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~-gad~~~~  608 (638)
                      ..|++++..+..|.++++.+...+    ...++++|+++|+++|.+|..|.||||+|+..|+.++|++||+. |++++.+
T Consensus       170 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~  249 (285)
T d1wdya_         170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT  249 (285)
T ss_dssp             TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC
T ss_pred             ccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCC
Confidence            445666666666666665544322    23577777888888888899999999999999999999999985 9999999


Q ss_pred             cCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          609 NREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       609 d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |.+|.||||+|+..|+  .++|++|+++||
T Consensus       250 d~~G~TpL~~A~~~~~--~eiv~~Ll~~GA  277 (285)
T d1wdya_         250 DSDGKTALLLAVELKL--KKIAELLCKRGA  277 (285)
T ss_dssp             CTTSCCHHHHHHHTTC--HHHHHHHHHHSS
T ss_pred             CCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence            9999999999999998  999999999997

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.5e-17  Score=137.61  Aligned_cols=97  Identities=24%  Similarity=0.497  Sum_probs=70.2

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++|+|||+|++ +..++|++|||+|.+ +.|+||+.....                                       
T Consensus         2 ~vik~G~L~K~~-~~~~~Wkkr~fvL~~-~~l~yy~~~~~~---------------------------------------   40 (103)
T d1eaza_           2 AVIKAGYCVKQG-AVMKNWKRRYFQLDE-NTIGYFKSELEK---------------------------------------   40 (103)
T ss_dssp             CCSEEEEEEEEC-TTTCCEEEEEEEECS-SEEEEESSTTCS---------------------------------------
T ss_pred             ceEEEEEEEEEC-CCCCCeeEEEEEEEC-CEEEEEecccCc---------------------------------------
Confidence            467999999995 456789999999985 555566544221                                       


Q ss_pred             cccceeecccceeecCCC---CCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDAD---QSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~---~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      .+.+.|+|..+.+.....   .....++|.|++++++|+|+|+|++|+++||.+|+.+|..
T Consensus        41 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~aI~~ai~~  101 (103)
T d1eaza_          41 EPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA  101 (103)
T ss_dssp             SCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEccceEEeeccccccccccceEEEEEeCCEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            122335554443322111   1245699999999999999999999999999999999864

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.3e-17  Score=151.74  Aligned_cols=37  Identities=14%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             CCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          198 DLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       198 ~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ...|+|+|++++|+|+|+|+|++|+++||++|+.+|.
T Consensus        96 ~~~~~F~I~t~~rt~~l~A~s~eE~~~WI~aL~~~i~  132 (169)
T d1btka_          96 RFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             CCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             ccCcceEEEeCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999986

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.5e-17  Score=136.19  Aligned_cols=96  Identities=25%  Similarity=0.416  Sum_probs=66.1

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      ++|+|||+|+++ ..++|++|||+|.++++++||.+....                                      ..
T Consensus         2 v~k~G~L~k~~~-~~k~WkkR~fvL~~~~~~l~~~~~~~~--------------------------------------~~   42 (104)
T d2i5fa1           2 IIKQGCLLKQGH-RRKNWKVRKFILREDPAYLHYYDPAGA--------------------------------------ED   42 (104)
T ss_dssp             EEEEEEEEEECT-TTCCEEEEEEEEETTTTEEEEECTTSC--------------------------------------SS
T ss_pred             EEEEEEEEEECC-CCCCcEEEEEEEECCeeEEEEEcCccc--------------------------------------cC
Confidence            589999999954 467899999999987665554443221                                      11


Q ss_pred             ccceeecccceeec-----CCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKV-----DADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       179 ~~~~i~l~~~~v~~-----~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      +.+.|.+..|.+..     .....+++|+|.|++++ ++|+|+|+|++|+++||+||+.||
T Consensus        43 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          43 PLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             CSEEEECTTCEEEEECC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccceEeecceEEEEeccCcccccccCccEEEEECCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            22334444443332     12233567999999876 689999999999999999999987

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.1e-17  Score=144.28  Aligned_cols=95  Identities=16%  Similarity=0.237  Sum_probs=72.0

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .-++|||+|+++ ..+.|+||||||. ++.|+||++..+                                       ..
T Consensus        11 ~~~eG~L~k~~~-~~k~WkkrwfvL~-~~~L~yY~~~~d---------------------------------------~~   49 (136)
T d1x1fa1          11 LYFEGFLLIKRS-GYREYEHYWTELR-GTTLFFYTDKKS---------------------------------------II   49 (136)
T ss_dssp             EEEEEEEEEECT-TCCSCEEEEEEEE-TTEEEEESCSSC---------------------------------------SS
T ss_pred             ccEEEEEEEECC-CCCCeEEEEEEEc-CCEeEEEeeccc---------------------------------------cc
Confidence            458999999955 4668999999998 677888876532                                       12


Q ss_pred             ccceeecccceeec-CCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          179 ARHTVNLLTSTIKV-DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       179 ~~~~i~l~~~~v~~-~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      +.+.|+|..|.+.. ..+..+.+|+|.|++++++|+|+|+|++|+++|+.+|+.+|.
T Consensus        50 ~~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~~~~f~Aes~~e~~~Wi~~I~~v~~  106 (136)
T d1x1fa1          50 YVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTE  106 (136)
T ss_dssp             CSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccceeeeeeecccccccceeeecCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            33445665443322 223335579999999999999999999999999999999875

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.1e-17  Score=141.32  Aligned_cols=104  Identities=19%  Similarity=0.379  Sum_probs=72.8

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCC-CCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSK-SSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~-~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      ..++|+|||+|++ ...+.|++|||||.++|+|+||...... +.+                                  
T Consensus         5 ~~v~k~G~L~K~~-~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~~~----------------------------------   49 (118)
T d1unqa_           5 VAIVKEGWLHKRG-EYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----------------------------------   49 (118)
T ss_dssp             GCEEEEEEEEEEC-SSSCCEEEEEEEEETTSEEEEESSCCCSHHHH----------------------------------
T ss_pred             CCEEEEEEEEEEC-CCCCCcEEEEEEEeccceeEEEeeccCccccc----------------------------------
Confidence            4578999999995 4577899999999988988887654331 111                                  


Q ss_pred             cccccceeecccceeecCCCCCCCcceEEEecCC----eeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          176 KSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT----KNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~----rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                       ..+...+.+..+...  ....++++||.|..+.    +.|+|+|+|++|+++||+||+.+|..+.+
T Consensus        50 -~i~l~~~~~~~~~~~--~~~~~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~~  113 (118)
T d1unqa_          50 -EAPLNNFSVAQCQLM--KTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK  113 (118)
T ss_dssp             -TSCSEEEECTTCEEE--EECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccceEEeecccc--cccccCCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence             111122223222222  2233568999998643    56899999999999999999999976543

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.1e-16  Score=139.09  Aligned_cols=98  Identities=22%  Similarity=0.490  Sum_probs=70.8

Q ss_pred             CCcceeEEEEEEeecCCCCCCceeeEEEEec-CceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCC
Q 006616           95 GKVQTIRQGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGV  172 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~-~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  172 (638)
                      +...++|+|||+||+. ..+.|+||||||+. ++.||||+.+.+ .|.|                               
T Consensus         4 ~~s~~~~eG~L~k~~~-~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p~g-------------------------------   51 (117)
T d1v5ua_           4 GSSGRSYEGILYKKGA-FMKPWKARWFVLDKTKHQLRYYDHRMDTECKG-------------------------------   51 (117)
T ss_dssp             SCCSSSEEEEEEECCC-SSSCCEEEEEEEETTTTEEEEESSSSCSSCCC-------------------------------
T ss_pred             CCCCCeEEEEEEEECC-CCCCceEEEEEEeCCCCEEEecccccccCcce-------------------------------
Confidence            3455679999999954 46689999999985 567888877643 2222                               


Q ss_pred             CCccccccceeecccceeec-------CCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          173 HDEKSAARHTVNLLTSTIKV-------DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       173 ~~~~~~~~~~i~l~~~~v~~-------~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                               .|.|..+.+-.       .+......++|.+.++.++|+|+|+|++|+++||.+|+.+|
T Consensus        52 ---------~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~ai  110 (117)
T d1v5ua_          52 ---------VIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL  110 (117)
T ss_dssp             ---------EEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred             ---------EEEecceEEEeecccccccccccccceEEEeeCCCcEEEEEeCCHHHHHHHHHHHHHHH
Confidence                     23332221110       12233457899999999999999999999999999998776

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.67  E-value=2.6e-17  Score=164.04  Aligned_cols=120  Identities=23%  Similarity=0.257  Sum_probs=100.1

Q ss_pred             CcccccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHH--------HHcCCCCcccCCCCCcHHH
Q 006616          513 SSSSLTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELL--------LQYGANINATDSRGLTPLH  584 (638)
Q Consensus       513 ~~~~l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~L--------l~~gadvn~~d~~G~TpLh  584 (638)
                      +|+++++++. +...+...|...++++... .+|+||||+||..|+.++|++|        +++|||||.+|..|+||||
T Consensus         2 ~p~~~~~~~~-~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           2 SPIKLHTEAA-GSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCHHHHHHH-SSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             ChHHHHHHhC-CCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            5666776664 3444556666666665332 4699999999999998887666        5679999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC
Q 006616          585 RCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDS  636 (638)
Q Consensus       585 ~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~  636 (638)
                      +|+..|+.++|++|+++||+++.+|.+|.|||++|+..++  .++++++...
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~--~~~~~~l~~~  129 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD--FGMMVYMLNS  129 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC--HHHHHHHTTS
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcc--hhhhhhhhhc
Confidence            9999999999999999999999999999999999999987  7788877654

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=1.6e-16  Score=138.76  Aligned_cols=97  Identities=20%  Similarity=0.373  Sum_probs=67.0

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++++|||+|+++...+.|++|||||. ++.|+||++....                                       
T Consensus         9 ~~i~eG~L~K~g~~~~~~WkkR~fvL~-~~~L~yy~~~~~~---------------------------------------   48 (119)
T d1omwa2           9 DCIMHGYMSKMGNPFLTQWQRRYFYLF-PNRLEWRGEGEAP---------------------------------------   48 (119)
T ss_dssp             CCCEEEEEEECC------CEEEEEEEE-TTEEEEECTTSCC---------------------------------------
T ss_pred             CeEEEEEEEEECCCCCCCeEEEEEEEE-cCeEEEEeccccc---------------------------------------
Confidence            357999999997666678999999998 5677787654321                                       


Q ss_pred             cccceeecc-cceeecCCCCCCCcceEEEecC-CeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          178 AARHTVNLL-TSTIKVDADQSDLRFCFRIISP-TKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       178 ~~~~~i~l~-~~~v~~~~~~~~rr~cF~I~t~-~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                        ...|.+. .+.|..  ....+++||.|+++ +++|+|+|+|++|+++||.+|+.++.....
T Consensus        49 --~~~i~l~~~~~v~~--~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~a~~~~~~  107 (119)
T d1omwa2          49 --QSLLTMEEIQSVEE--TQIKERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREAQQ  107 (119)
T ss_dssp             --CEEEEGGGEEEEEE--EESSSCEEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --Cccceecccccccc--ccccccceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence              1123332 233332  22356799999876 489999999999999999999999876554

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.1e-16  Score=136.07  Aligned_cols=97  Identities=23%  Similarity=0.567  Sum_probs=71.1

Q ss_pred             cceeEEEEEEeecCC---CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616           97 VQTIRQGYLSKRSSN---LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~---~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      ..++|+|||+|++..   ..+.|++|||||. ++.|+||+.+..                                    
T Consensus         7 ~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~-~~~L~~y~~~~~------------------------------------   49 (111)
T d1u5fa1           7 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALS-KTVFYYYGSDKD------------------------------------   49 (111)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEE-TTEEEEESSTTC------------------------------------
T ss_pred             CCeeEEEEEEEECCCCCCCcCCceEEEEEEE-CCEEEeeccccc------------------------------------
Confidence            457899999999654   3468999999998 667777765432                                    


Q ss_pred             CccccccceeecccceeecC---CCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVD---ADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~---~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                         ..+.+.|.|..+++...   ....+++|||.|++++ ++|+|+|+|++|+++||+||+.+|
T Consensus        50 ---~~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          50 ---KQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             ---SSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             ---cCcceEEEecccEEEeeccccccccccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence               11223455555444321   2233567999999975 799999999999999999999875

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-16  Score=136.96  Aligned_cols=98  Identities=24%  Similarity=0.463  Sum_probs=72.1

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .+||+|||+|++ ...++|++|||||.++ .|+||+.+..                                       .
T Consensus         4 ~~ikeG~L~k~~-~~~k~WkkryfvL~~~-~L~~y~~~~~---------------------------------------~   42 (113)
T d1plsa_           4 KRIREGYLVKKG-SVFNTWKPMWVVLLED-GIEFYKKKSD---------------------------------------N   42 (113)
T ss_dssp             CCSEEEEEEEES-SSSSCCEEEEEEEETT-EEEEESSTTC---------------------------------------S
T ss_pred             CceEEEEEEEeC-CCCCCceEEEEEEECC-EEEEEecCCc---------------------------------------c
Confidence            468999999995 4567899999999954 5555644322                                       1


Q ss_pred             cccceeecccceeecC-CCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVD-ADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~-~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                      .+...|+|..+.+... .+...++++|.|+++. ++|+|+|+|++|+.+||.+|+.+|...
T Consensus        43 ~p~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~ai~~~  103 (113)
T d1plsa_          43 SPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             SCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEECccCeEEeeecccCCcceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            1223456655544432 3344667999998864 799999999999999999999999765

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.4e-16  Score=140.43  Aligned_cols=94  Identities=26%  Similarity=0.491  Sum_probs=64.9

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCC-CCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQC-SKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      |.|+|||+|+++ ..+.|+||||||+ ++.|+||++.. ..+.                                     
T Consensus         5 p~keG~L~K~~~-~~k~WkrR~fvL~-~~~L~yy~~~~~~~~~-------------------------------------   45 (127)
T d1fgya_           5 PDREGWLLKLGG-RVKTWKRRWFILT-DNCLYYFEYTTDKEPR-------------------------------------   45 (127)
T ss_dssp             CSEEEEEEEECS-SSCCEEEEEEEEE-TTEEEEESSTTCSSCS-------------------------------------
T ss_pred             CceEEEEEEECC-CCCCcEEEEEEEE-CCEEEEEccCCCcccc-------------------------------------
Confidence            579999999955 4678999999998 56666665432 2222                                     


Q ss_pred             cccceeecccceeecCCCCCCCcceEEE----------------------ecCCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRI----------------------ISPTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I----------------------~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                         +.|+|..+++....+ ..+++||.+                      .++.++|+|+|+|++|+++||.||+.+|..
T Consensus        46 ---g~i~L~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~  121 (127)
T d1fgya_          46 ---GIIPLENLSIREVLD-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             ---EEEECTTCEEEEECC-SSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ---ceEeCCCeEEEEccC-CCCCceEEEeccccccccccccccccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHcc
Confidence               234444444443222 233455544                      445678999999999999999999999863

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.1e-16  Score=139.44  Aligned_cols=99  Identities=26%  Similarity=0.473  Sum_probs=70.2

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEec-CceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDS-RGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~-~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++|||.|+.....+.|+||||||.. ++.|+||++... .+.|.+                                  
T Consensus        16 ~~~GyL~k~~~~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~----------------------------------   61 (126)
T d1v5pa_          16 RICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAG----------------------------------   61 (126)
T ss_dssp             CEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCC----------------------------------
T ss_pred             ceeeeEEEECCCCCCCeeEEEEEEEcCCCeEEEeecccccccccee----------------------------------
Confidence            46899999976667899999999974 678888866533 333321                                  


Q ss_pred             cccceeecccceeec---CCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKV---DADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~---~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                       +...|++..+....   ........|||.|.++.|.|+|+|+|++|+++||++|+.|+
T Consensus        62 -~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~Aes~~e~~~Wi~aL~~A~  119 (126)
T d1v5pa_          62 -AVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS  119 (126)
T ss_dssp             -CSEEEETTTCCEEEECCTTTSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             -ecccceeeeeeccccccccccccccceEEEcCCCeeEEEECCCHHHHHHHHHHHHHHh
Confidence             11223333222111   11223457999999999999999999999999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.9e-16  Score=165.34  Aligned_cols=178  Identities=17%  Similarity=0.239  Sum_probs=140.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchh-------hHHHHHhhhhcc---ccCCCcccccccccCCccc
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL-------TLAKAMLLNEQT---SLERSSSSLTGNSSDRSSS  527 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~-------~l~~~ll~~~~~---~~~~~~~~l~~~~~~~~~~  527 (638)
                      ..|+.|+..++.. ++++|+..|+++|..+..+....+.       .....+......   ......+++..+.......
T Consensus       167 ~~L~~A~~~~~~~-~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  245 (408)
T d1n11a_         167 TPLHVAVHHNNLD-IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE  245 (408)
T ss_dssp             CHHHHHHHTTCHH-HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHcCCHH-HHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHh
Confidence            4577788777765 5577779999999887766433222       222222221111   0111122334444445555


Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      .+..+...+..++..+..|.||||.|+..++.+++++|+++|++++..+..+.||||+|+..++.+++++|++.|++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~  325 (408)
T d1n11a_         246 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA  325 (408)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred             HhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccc
Confidence            66677888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +|.+|.||||+|+..|+  .++|++|+++||
T Consensus       326 ~d~~G~T~Lh~A~~~g~--~~iv~~Ll~~GA  354 (408)
T d1n11a_         326 KTKLGYSPLHQAAQQGH--TDIVTLLLKNGA  354 (408)
T ss_dssp             CCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence            99999999999999998  999999999997

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.65  E-value=1e-18  Score=181.99  Aligned_cols=160  Identities=11%  Similarity=0.025  Sum_probs=114.9

Q ss_pred             ccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcc-cccccccCCCCCCCcCCCC
Q 006616          467 NDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSS-SGSLNLAGTSEGQTMDDLE  545 (638)
Q Consensus       467 ~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~-~~~~lL~~~~~~~~~~d~~  545 (638)
                      ++...+.++|...+++++..+.....        .  ....+..+.+++++++..++... ..+.+|+..|++++..|.+
T Consensus        56 ~~~~~~~~~l~~~~~~~~~~~~~~~~--------~--~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~  125 (346)
T d2ajaa1          56 KNMEQVRQLLCLYYAHYNRNAKQLWS--------D--AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE  125 (346)
T ss_dssp             SHHHHHHHHHHHHHHHTTTTCTTHHH--------H--HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHH
T ss_pred             ccHHHHHHHHHHcchhhccchhhhhh--------H--HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCC
Confidence            34556777776667766654332210        0  01112222333344333332222 2355788999999999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCCcccC--CCCCcHHHHHHHhCCHHHHHHHHhCCCCCC---CccCCCCCHHHHHH
Q 006616          546 GCTLLHLACDSADIGMLELLLQYGANINATD--SRGLTPLHRCILRGKAMFAKLLLTRGADPR---AVNREGKTSLELAV  620 (638)
Q Consensus       546 G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d--~~G~TpLh~A~~~g~~~~v~lLl~~gad~~---~~d~~g~TpL~~A~  620 (638)
                      |+||||+||..|+.++|++|+++|++++..+  ..|+||||+|+..|+.++|++|++.|++..   ..+.++.||++.|+
T Consensus       126 g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~  205 (346)
T d2ajaa1         126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV  205 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHh
Confidence            9999999999999999999999999999876  459999999999999999999999998753   44566778889999


Q ss_pred             HcCCCcHHHHHHHhhCCC
Q 006616          621 ESNFADSEVLAILSDSHG  638 (638)
Q Consensus       621 ~~g~~d~eiv~lLle~ga  638 (638)
                      ..|+  .++|++|+++||
T Consensus       206 ~~g~--~~iv~~Ll~~ga  221 (346)
T d2ajaa1         206 GRGH--HNVINFLLDCPV  221 (346)
T ss_dssp             TTCC--HHHHHHHTTSHH
T ss_pred             hcCH--HHHHHHHHhCCC
Confidence            9998  899999999874

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.4e-16  Score=135.45  Aligned_cols=98  Identities=26%  Similarity=0.426  Sum_probs=67.0

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++|+|||+|++. ..+.|+||||+|.++++++||......                                     .
T Consensus         9 ~~v~k~G~L~K~~~-~~k~WkkR~fvL~~~~~~~~~~~~~~~-------------------------------------~   50 (116)
T d1x1ga1           9 GTVVKQGYLAKQGH-KRKNWKVRRFVLRKDPAFLHYYDPSKE-------------------------------------E   50 (116)
T ss_dssp             SEEEEEEEEEEECS-SSSSEEEEEEEEEESSCEEEEECSSSC-------------------------------------C
T ss_pred             CCEEEEEEEEEEcC-CCCCCceEEEEEECCCcEEEEeccccc-------------------------------------c
Confidence            45789999999954 567899999999887764444332210                                     0


Q ss_pred             ccccceeecccceeecC--------CCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVD--------ADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~--------~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      ..+.+.|+|..|.+...        .....+.++|.|++++ ++|+|+|+|++|+++||+||+.+
T Consensus        51 ~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          51 NRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             SSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ccceeEEEcCCCEEEEecccCcccccccccccceeEEEeCCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            11222344444433221        1223457899999986 68999999999999999999875

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.65  E-value=2.9e-16  Score=137.75  Aligned_cols=106  Identities=22%  Similarity=0.385  Sum_probs=77.4

Q ss_pred             CCcceeEEEEEEeecC-------CCCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCcccccccc
Q 006616           95 GKVQTIRQGYLSKRSS-------NLRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSS  166 (638)
Q Consensus        95 ~~~~~~k~GyL~Kr~~-------~~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~  166 (638)
                      +...+.+||||+++..       ...+.|++|||||+ ++.|+||+++.. .+.+                         
T Consensus         4 ~~~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~-~~~L~~~~~~~~~~~~~-------------------------   57 (123)
T d1wjma_           4 GSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLR-RGSLGFYKDAKAASAGV-------------------------   57 (123)
T ss_dssp             CCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEE-TTEEEEESSHHHHTTTC-------------------------
T ss_pred             CCCCCeeEEEEEEEeeccccCcccCCCCCcEEEEEEE-CCEEEEEecchhccccc-------------------------
Confidence            3445678999998742       13468999999998 677788865422 1111                         


Q ss_pred             ccCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          167 HYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       167 ~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                               .......+++..|.+....+...++|||.|++.+ ++|+|+|+|++|+++||++|+.+|..
T Consensus        58 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~~  118 (123)
T d1wjma_          58 ---------PYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             ---------BSSSCCCEECTTCEEEECTTCSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ---------cccccccccccceeEEecccccccCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                     0112233567777777766666788999999875 78999999999999999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=3.3e-17  Score=165.03  Aligned_cols=81  Identities=16%  Similarity=0.088  Sum_probs=69.4

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      ++.+...+...++..|+..|++++..|.+|+||||+||..|+.++|++||++|+|+|.+|..|+||||+|+.    ++++
T Consensus       203 L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~~~  278 (291)
T d1s70b_         203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DILG  278 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GGGH
T ss_pred             hhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HHHH
Confidence            333444445566778889999999999999999999999999999999999999999999999999999974    5777


Q ss_pred             HHHhC
Q 006616          597 LLLTR  601 (638)
Q Consensus       597 lLl~~  601 (638)
                      +|.+.
T Consensus       279 ~L~~~  283 (291)
T d1s70b_         279 YLEEL  283 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.8e-16  Score=143.05  Aligned_cols=94  Identities=20%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .++|+|||+||++   ..|+||||||+++.++||......                                        
T Consensus        47 ~ilK~G~L~Kr~~---~~wkkR~FvL~~~~L~YYkd~~~~----------------------------------------   83 (147)
T d1w1ha_          47 LILKMGPVDKRKG---LFARRRQLLLTEGPHLYYVDPVNK----------------------------------------   83 (147)
T ss_dssp             CEEEEEEEEECCT---TSCEEEEEEEETTTEEEEEETTTT----------------------------------------
T ss_pred             eEEEEEEEEeecC---CcceEEEEEEcCCeeEEEeCCCcc----------------------------------------
Confidence            4789999999953   369999999996555555433322                                        


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      .+.+.|.|..|....    ...++||.|++|+|+|+|+|++ .|+.+||.+|+.+|....+.
T Consensus        84 ~~kG~I~L~~~~~v~----~~~~~~F~I~t~~Rty~l~a~~-~d~~~Wv~aI~~v~~~~~~~  140 (147)
T d1w1ha_          84 VLKGEIPWSQELRPE----AKNFKTFFVHTPNRTYYLMDPS-GNAHKWCRKIQEVWRQRYQS  140 (147)
T ss_dssp             EEEEEECCCTTCEEE----EEETTEEEEECSSCEEEEECTT-SCHHHHHHHHHHHHHHHHCS
T ss_pred             cccceEEeccccccc----cccCceEEEecCceEEEEEcCh-HHHHHHHHHHHHHHHHHhhh
Confidence            233456665444321    2346899999999999999865 68999999999999887755

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.3e-16  Score=131.96  Aligned_cols=90  Identities=20%  Similarity=0.397  Sum_probs=70.4

Q ss_pred             EEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccccc
Q 006616          101 RQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAAR  180 (638)
Q Consensus       101 k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (638)
                      ++|||.|.+.   +.|+||||+|+ ++.|+||+.+..                                      ...+.
T Consensus         3 ~s~yl~~~~~---~~WkkR~fvL~-~~~L~yyk~~~~--------------------------------------~~~~~   40 (95)
T d2cofa1           3 TSSYLNVLVN---SQWKSRWCSVR-DNHLHFYQDRNR--------------------------------------SKVAQ   40 (95)
T ss_dssp             TCCEEEEEET---TEEEEEEEEEC-SSCEEEECSSTT--------------------------------------CSEEE
T ss_pred             cccchhhhcC---CCceEEEEEEE-CCEEEEEecccc--------------------------------------ccccc
Confidence            5799999953   46999999997 677788866432                                      11234


Q ss_pred             ceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          181 HTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       181 ~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ..+.|..|.|... ++.+++|||.|++++ ++|+|+|+|++|+++||.+|+.+.
T Consensus        41 ~~i~l~~~~v~~~-~~~~~~~~f~~~~~~~~~~~l~A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          41 QPLSLVGCEVVPD-PSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             EEECTTTCEEECC-CBTTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             ccccccceEEEec-ccccceecceeccccceeEEeeCCCHHHHHHHHHHHHHHh
Confidence            5677888888764 445778999998765 899999999999999999999763

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-16  Score=143.14  Aligned_cols=119  Identities=21%  Similarity=0.198  Sum_probs=110.1

Q ss_pred             ccccccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHH
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAK  596 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  596 (638)
                      |+.|+..+....+..|++.|++++..|.+|.||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++.+++.
T Consensus         5 Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~   83 (156)
T d1ihba_           5 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQ   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccccc
Confidence            44555566777888899999999999999999999886 78999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          597 LLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       597 lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .|++.+.+++..|..|.+||++|+..++  .+++++|+++|+
T Consensus        84 ~l~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~Ll~~~~  123 (156)
T d1ihba_          84 TLLEFQADVNIEDNEGNLPLHLAAKEGH--LRVVEFLVKHTA  123 (156)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSC
T ss_pred             cccccccccccccccccccccccccccc--cccccccccccc
Confidence            9999999999999999999999999987  899999998874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=3.8e-16  Score=149.08  Aligned_cols=166  Identities=23%  Similarity=0.209  Sum_probs=111.1

Q ss_pred             hhhhhhhcccccCcccc-ccchhc-------cchhhHHHHHhhhhccc-----cCCCcccccccccCCcccccccccCCC
Q 006616          470 KAVYRHIVNFEVDVNAV-YEQVSC-------ISSLTLAKAMLLNEQTS-----LERSSSSLTGNSSDRSSSGSLNLAGTS  536 (638)
Q Consensus       470 ~~v~~lLl~~gaDvN~~-~~~~~~-------~~~~~l~~~ll~~~~~~-----~~~~~~~l~~~~~~~~~~~~~lL~~~~  536 (638)
                      .+|+++|+++|+|+|.. |..|.+       .++.++++.|+..+...     ...++..... ................
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV-AADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccc-cccccccccccccccc
Confidence            46889999999999974 655522       22233444443322111     0111111111 1111111111111222


Q ss_pred             CCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHH
Q 006616          537 EGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSL  616 (638)
Q Consensus       537 ~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL  616 (638)
                      .........|.++.+.+.........+.|+.++++++.++..|+|||++|+..+...+++.|++++++++..|..|.|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence            22222333445555555555556788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCcHHHHHHHhhCCC
Q 006616          617 ELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       617 ~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |+|+..|+  .++|++|+++||
T Consensus       161 ~~A~~~g~--~~~v~~Ll~~ga  180 (209)
T d1ot8a_         161 FLAAREGS--YEASKALLDNFA  180 (209)
T ss_dssp             HHHHHTTC--HHHHHHHHHTTC
T ss_pred             chhccccH--HHHHHHHHHCCC
Confidence            99999998  999999999986

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.62  E-value=2.8e-16  Score=134.03  Aligned_cols=98  Identities=19%  Similarity=0.405  Sum_probs=72.4

Q ss_pred             EEEEEEeec----C---CCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCC
Q 006616          101 RQGYLSKRS----S---NLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVH  173 (638)
Q Consensus       101 k~GyL~Kr~----~---~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  173 (638)
                      +||||++|.    .   ...+.|++|||||+ ++.|+||+.......+                                
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~-~~~L~~yk~~~~~~~~--------------------------------   47 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVIN-NQEMGFYKDAKSAASG--------------------------------   47 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEE-TTEEEEESSHHHHHHT--------------------------------
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEE-CCEEEEEeChhhcccc--------------------------------
Confidence            489999873    1   13357999999998 6778888764321000                                


Q ss_pred             CccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          174 DEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       174 ~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                       ........|++..|.+....+...++|||.|.+++ ++|+|+|+|++|+++||++|+.|
T Consensus        48 -~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          48 -IPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             -CCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             -cccCcceeEEeccceeeeccccccCcceEeecccCCCEEEEECCCHHHHHHHHHHHHhC
Confidence             01122344788888888766666788999999986 78999999999999999999864

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-16  Score=159.69  Aligned_cols=134  Identities=21%  Similarity=0.193  Sum_probs=107.5

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCCcccccccccCCCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDRSSSGSLNLAGTSE  537 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~lL~~~~~  537 (638)
                      ..|+.|+..++.+.+..+|...|+|+|..+..+......                   .+..+.......++..|+..|+
T Consensus       150 t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~~~Li~~ga  210 (285)
T d1wdya_         150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-------------------ALLSSDDSDVEAITHLLLDHGA  210 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-------------------HHHCSCTTTHHHHHHHHHHTTC
T ss_pred             hHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccccc-------------------ccccccchHHHHHHHHHHHCCC
Confidence            357888998888877666666799999887655211110                   0111222223345566788999


Q ss_pred             CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccC
Q 006616          538 GQTMDDLEGCTLLHLACDSADIGMLELLLQY-GANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNR  610 (638)
Q Consensus       538 ~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~  610 (638)
                      +++..|..|.||||+|+..|+.+++++||+. |+++|.+|..|.||||+|+..|+.++|++||++|||+|++|.
T Consensus       211 ~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999999999999999985 999999999999999999999999999999999999999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.1e-16  Score=141.89  Aligned_cols=105  Identities=24%  Similarity=0.257  Sum_probs=96.8

Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRA  607 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~  607 (638)
                      +..+|...+++++..|..|+||||+|+ .|+.++++.||+++++++..+..|.+||++++..++.+++++++++|++++.
T Consensus        18 vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~   96 (156)
T d1bd8a_          18 VRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV   96 (156)
T ss_dssp             HHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344455668999999999999999987 5889999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCCcHHHHHHHhh
Q 006616          608 VNREGKTSLELAVESNFADSEVLAILSD  635 (638)
Q Consensus       608 ~d~~g~TpL~~A~~~g~~d~eiv~lLle  635 (638)
                      +|..|.||||+|+..|+  .+++++|++
T Consensus        97 ~~~~~~t~L~~A~~~~~--~~i~~~L~~  122 (156)
T d1bd8a_          97 PDGTGALPIHLAVQEGH--TAVVSFLAA  122 (156)
T ss_dssp             CCTTSCCHHHHHHHHTC--HHHHHHHHT
T ss_pred             ccCCCCeeecccccccc--ccccccccc
Confidence            99999999999999998  899998874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.4e-15  Score=147.03  Aligned_cols=109  Identities=29%  Similarity=0.399  Sum_probs=65.8

Q ss_pred             ccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCc------ccCCCCCcHHHHHHHhCCHHHHHHHHhC
Q 006616          528 GSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANIN------ATDSRGLTPLHRCILRGKAMFAKLLLTR  601 (638)
Q Consensus       528 ~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn------~~d~~G~TpLh~A~~~g~~~~v~lLl~~  601 (638)
                      ++..|+..|++++..|..|.||||+|+..++.++++.|+..+.+..      .....|.||||.|+..++.+++.+|+..
T Consensus        54 iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  133 (221)
T d1iknd_          54 IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL  133 (221)
T ss_dssp             HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc
Confidence            3344444444444444444444444444444444444444433211      1222345555555555666666666677


Q ss_pred             CCCCCCcc-CCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          602 GADPRAVN-REGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       602 gad~~~~d-~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      |+.++..+ .+|.||||+|+..|+  .+++++|+++||
T Consensus       134 ~~~~~~~~~~~G~T~L~~A~~~g~--~~~v~~Ll~~ga  169 (221)
T d1iknd_         134 GADVNAQEPCNGRTALHLAVDLQN--PDLVSLLLKCGA  169 (221)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTC--HHHHHHHHTTTC
T ss_pred             CcccccccccCCCCcccccccccc--HHHHHHHHhcCC
Confidence            77776655 579999999999998  899999999986

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.6e-15  Score=154.33  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=81.2

Q ss_pred             CCCCCCCcC-CCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCH-------HHHHH--------
Q 006616          534 GTSEGQTMD-DLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKA-------MFAKL--------  597 (638)
Q Consensus       534 ~~~~~~~~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~-------~~v~l--------  597 (638)
                      ..+.++|.. |.+|+||||+||..|+.++|++||++||+++.+|..|+||||+|+..++.       +++++        
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            455677765 78899999999999999999999999999999999999999998875531       22222        


Q ss_pred             ----------------------------------HHhCCCC-------------------------------------CC
Q 006616          598 ----------------------------------LLTRGAD-------------------------------------PR  606 (638)
Q Consensus       598 ----------------------------------Ll~~gad-------------------------------------~~  606 (638)
                                                        +++.+..                                     +|
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence                                              2222211                                     67


Q ss_pred             CccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          607 AVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       607 ~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+|.+|+||||+|+..|+  .++|++|+++||
T Consensus       254 ~~D~~G~TpLh~A~~~g~--~~iv~~Ll~~GA  283 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGN--ISIVDALLDYGA  283 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCC--HHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHcCC--HHHHHHHHHCCC
Confidence            889999999999999998  899999999987

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=9.3e-16  Score=134.34  Aligned_cols=103  Identities=16%  Similarity=0.358  Sum_probs=72.1

Q ss_pred             eeEEEEEEeecCC-------CCCCceeeEEEEecCceEEEEecCCC-CCCCCCCccccccCcCcccCCccccccccccCC
Q 006616           99 TIRQGYLSKRSSN-------LRGDWKRRFFVLDSRGMLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHG  170 (638)
Q Consensus        99 ~~k~GyL~Kr~~~-------~~~~WkrRwfvL~~~~~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  170 (638)
                      ..+||||+|+...       ..++|+||||||+ ++.|+||..+.. .+.+.+                           
T Consensus         8 ~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~-~~~L~yy~~~~~~~~~~~~---------------------------   59 (122)
T d1droa_           8 EGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAK-AGRISFYKDQKGYKSNPEL---------------------------   59 (122)
T ss_dssp             SSEEEEEEEECSCCCCCCTTCCCCCEEEEEEES-SSCCBEESSSSHHHHCTTC---------------------------
T ss_pred             cceEEEEEEeecccccCcccCCCCceEEEEEEe-CCEEEEEcCcccccccCcc---------------------------
Confidence            3489999987421       2347999999998 556666655432 111110                           


Q ss_pred             CCCCccccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          171 GVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       171 ~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                           .......+.+..+.+....+...+++||.|++++ ++|+|+|+|++|+++||.+|+.++.
T Consensus        60 -----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~  119 (122)
T d1droa_          60 -----TFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             -----CSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             -----cccccceEeccceEEEeccccccccceEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence                 0112233556666666655666778999999997 7899999999999999999998874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.1e-16  Score=146.70  Aligned_cols=171  Identities=24%  Similarity=0.228  Sum_probs=119.2

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchh-------hHHHHHhhhhccc---c----CCCcccccccccC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSL-------TLAKAMLLNEQTS---L----ERSSSSLTGNSSD  523 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~-------~l~~~ll~~~~~~---~----~~~~~~l~~~~~~  523 (638)
                      ..|+.|+..++.+ +++.|++.|+++|.....+......       ...+.........   .    ......+......
T Consensus        42 TpL~~A~~~~~~~-iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  120 (228)
T d1k1aa_          42 TPLHLAVITTLPS-VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT  120 (228)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccceehhcccccc-cccccccccccccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccc
Confidence            4688888877654 5667779999999877655322221       1222111110000   0    0111111111111


Q ss_pred             CcccccccccCCCC-CCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC
Q 006616          524 RSSSGSLNLAGTSE-GQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG  602 (638)
Q Consensus       524 ~~~~~~~lL~~~~~-~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g  602 (638)
                      ........|..... .....+..|.++||.|+..+...+++.+++.|.+++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G  200 (228)
T d1k1aa_         121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  200 (228)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             ccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCC
Confidence            22222233333333 33445667999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCHHHHHHHcCCCcHHHHH
Q 006616          603 ADPRAVNREGKTSLELAVESNFADSEVLA  631 (638)
Q Consensus       603 ad~~~~d~~g~TpL~~A~~~g~~d~eiv~  631 (638)
                      +|++.+|.+|.||||+|+..|+  .+||+
T Consensus       201 ad~n~~d~~G~TpL~~A~~~~~--~divk  227 (228)
T d1k1aa_         201 ADSSLKNCHNDTPLMVARSRRV--IDILR  227 (228)
T ss_dssp             CCTTCCCTTSCCTTTTCSSHHH--HHHHT
T ss_pred             CCCCCCCCCCCCHHHHHHhCCC--ccccC
Confidence            9999999999999999999987  77774

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=1.1e-15  Score=147.95  Aligned_cols=120  Identities=22%  Similarity=0.251  Sum_probs=95.3

Q ss_pred             ccccccCCcccccccccCCCCCCCc---CCCCCCcHHHH-----------------------------------HHHhCC
Q 006616          517 LTGNSSDRSSSGSLNLAGTSEGQTM---DDLEGCTLLHL-----------------------------------ACDSAD  558 (638)
Q Consensus       517 l~~~~~~~~~~~~~lL~~~~~~~~~---~d~~G~TpLh~-----------------------------------Aa~~g~  558 (638)
                      |+.+...+...++.+|+..|++++.   .+..|.+|+|+                                   ++..++
T Consensus        38 L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  117 (229)
T d1ixva_          38 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW  117 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            4444555566677788888888763   34344555554                                   444456


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhC-
Q 006616          559 IGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRG-ADPRAVNREGKTSLELAVESNFADSEVLAILSDS-  636 (638)
Q Consensus       559 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~g-ad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~-  636 (638)
                      .+++++|+..|.+.+.+|..|+||||+|+..|+.+++++|++.| .+++.+|.+|.||||+|+..|+  .++|++|++. 
T Consensus       118 ~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~--~~~v~~Ll~~~  195 (229)
T d1ixva_         118 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH--GDAAVLLVEKY  195 (229)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC--HHHHHHHHHHH
T ss_pred             hhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc--HHHHHHHHHhc
Confidence            67777788888888888899999999999999999999999986 7889999999999999999998  8999999974 


Q ss_pred             CC
Q 006616          637 HG  638 (638)
Q Consensus       637 ga  638 (638)
                      |+
T Consensus       196 ga  197 (229)
T d1ixva_         196 GA  197 (229)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.5e-16  Score=162.08  Aligned_cols=141  Identities=18%  Similarity=0.152  Sum_probs=100.4

Q ss_pred             cceecccccccchhhhhhhcccccCccccccchhccchhhHHHHHhhhhccccCCCcccccccccCC--cccccccccCC
Q 006616          458 HQIWEGVRTNDKKAVYRHIVNFEVDVNAVYEQVSCISSLTLAKAMLLNEQTSLERSSSSLTGNSSDR--SSSGSLNLAGT  535 (638)
Q Consensus       458 ~~L~~Av~~~d~~~v~~lLl~~gaDvN~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~l~~~~~~~--~~~~~~lL~~~  535 (638)
                      ..|+.|+..|+.+ ++++|++.|+|+|.++..+.                     +++++++...+.  ......++...
T Consensus       109 T~LH~Aa~~g~~~-~v~~Ll~~gad~~~~d~~G~---------------------TpL~~A~~~~~~~~~~~~~~ll~~l  166 (301)
T d1sw6a_         109 TPLHWLTSIANLE-LVKHLVKHGSNRLYGDNMGE---------------------SCLVKAVKSVNNYDSGTFEALLDYL  166 (301)
T ss_dssp             CHHHHHHHTTCHH-HHHHHHHTTCCTTBCCTTCC---------------------CHHHHHHHSSHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHcCCHH-HHHHHHHCCCCCCcCCcccc---------------------cHHHHhhhcccchhhhhHHHHHHHH
Confidence            5688899888876 55777799999999887762                     333333322110  00001111111


Q ss_pred             CCCCCcCCCCCCcHHHHHHHhCC----HH--------HHHHHHHcCCC--------------------------------
Q 006616          536 SEGQTMDDLEGCTLLHLACDSAD----IG--------MLELLLQYGAN--------------------------------  571 (638)
Q Consensus       536 ~~~~~~~d~~G~TpLh~Aa~~g~----~~--------~v~~Ll~~gad--------------------------------  571 (638)
                      ...++..|..|+||||+|+..+.    ..        ++.+++..+..                                
T Consensus       167 ~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (301)
T d1sw6a_         167 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW  246 (301)
T ss_dssp             GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHH
T ss_pred             hhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHH
Confidence            23456678899999999886544    22        33444444332                                


Q ss_pred             -----CcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCccCCCCCHHHHHH
Q 006616          572 -----INATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAV  620 (638)
Q Consensus       572 -----vn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d~~g~TpL~~A~  620 (638)
                           +|.+|..|+||||+|++.|+.++|++||++||+++++|..|.|||++|+
T Consensus       247 ~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         247 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence                 6889999999999999999999999999999999999999999999985

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3.6e-15  Score=133.34  Aligned_cols=100  Identities=17%  Similarity=0.292  Sum_probs=68.7

Q ss_pred             CcceeEEEEEEeec-------CCCCCCceeeEEEEecCc-----eEEEEecCCC-CCCCCCCccccccCcCcccCCcccc
Q 006616           96 KVQTIRQGYLSKRS-------SNLRGDWKRRFFVLDSRG-----MLYYYRKQCS-KSSGSGSQLSSQRNSSELGSGLLSR  162 (638)
Q Consensus        96 ~~~~~k~GyL~Kr~-------~~~~~~WkrRwfvL~~~~-----~l~y~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~  162 (638)
                      ...+.|+|||.++-       ++..+.|+||||||+.+.     .|+||+.... ++.+.                    
T Consensus        15 ~~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~~g~--------------------   74 (136)
T d1v5ma_          15 LVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVS--------------------   74 (136)
T ss_dssp             SCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSC--------------------
T ss_pred             cceeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCcccccCcCcc--------------------
Confidence            34567999997541       224568999999998754     4777776543 22221                    


Q ss_pred             ccccccCCCCCCccccccceeeccc---ceeecCCCCCCCcceEEEecCCe-eEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          163 WLSSHYHGGVHDEKSAARHTVNLLT---STIKVDADQSDLRFCFRIISPTK-NYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~i~l~~---~~v~~~~~~~~rr~cF~I~t~~r-t~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                                          |.+..   +......+..+++|||.|.++++ .|+|+|+|++|+++||++|+.+|..
T Consensus        75 --------------------i~l~~~~~~~~~~~~~~~~~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~ai~~  131 (136)
T d1v5ma_          75 --------------------IPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDS  131 (136)
T ss_dssp             --------------------EETTTCCBCCCCCCSSSCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             --------------------eecccceeeeeeccccCCCCCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                                22211   11111123446789999999985 6999999999999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.54  E-value=5.1e-16  Score=161.29  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=85.4

Q ss_pred             CCcCCCCCCcHHHHHHHhCCHHHHHH---HHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCCcc--CCCC
Q 006616          539 QTMDDLEGCTLLHLACDSADIGMLEL---LLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVN--REGK  613 (638)
Q Consensus       539 ~~~~d~~G~TpLh~Aa~~g~~~~v~~---Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad~~~~d--~~g~  613 (638)
                      ++.++..|.||||+||..|+.+++++   |+..|+++|.+|..|+||||+||..|+.++|++|+++|++++..+  .+|.
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCC
Confidence            34567789999999999999877655   789999999999999999999999999999999999999999876  4699


Q ss_pred             CHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          614 TSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       614 TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      ||||+|+..||  .+||++|+++|+
T Consensus       163 t~L~~Aa~~g~--~~iv~~Ll~~~~  185 (346)
T d2ajaa1         163 HAFRLAAENGH--LHVLNRLCELAP  185 (346)
T ss_dssp             HHHHHHHHTTC--HHHHHHHHHSCG
T ss_pred             ChhHHHHHHhh--HHHHHHHHHcCC
Confidence            99999999999  999999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=136.86  Aligned_cols=124  Identities=20%  Similarity=0.194  Sum_probs=103.9

Q ss_pred             CCCcccccccccCCccccccc----ccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccC----------
Q 006616          511 ERSSSSLTGNSSDRSSSGSLN----LAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATD----------  576 (638)
Q Consensus       511 ~~~~~~l~~~~~~~~~~~~~l----L~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d----------  576 (638)
                      +.|++++++...  ....+..    +...|++++..|.+|+||||+|+..|+.+++++|+++|++++..+          
T Consensus         3 G~TpLh~A~~~g--~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           3 GDTPLHIAVVQG--NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TCCHHHHHHHTT--CHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            345555554433  3333332    346899999999999999999999999999999999999877643          


Q ss_pred             -------------------------------------------------------------CCCCcHHHHHHHhCCHHHH
Q 006616          577 -------------------------------------------------------------SRGLTPLHRCILRGKAMFA  595 (638)
Q Consensus       577 -------------------------------------------------------------~~G~TpLh~A~~~g~~~~v  595 (638)
                                                                                   ..|.+||+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                         3566778889999999999


Q ss_pred             HHHHhCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          596 KLLLTRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       596 ~lLl~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      +.++++|.+++.+|..|.||||+|+..|+  .+++++|+++||
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~Ga  201 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGL--LPLVRTLVRSGA  201 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTC--HHHHHHHHHTTC
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCC--HHHHHHHHHCCC
Confidence            99999999999999999999999999998  899999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1e-14  Score=131.96  Aligned_cols=116  Identities=28%  Similarity=0.320  Sum_probs=105.6

Q ss_pred             cccCCcccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHH
Q 006616          520 NSSDRSSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLL  599 (638)
Q Consensus       520 ~~~~~~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl  599 (638)
                      |...+...++..|+..|++++ .|..|+||||+|+..++.++++.++......+..+..+.++++.++...+.+++++|+
T Consensus         9 Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (153)
T d1awcb_           9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL   87 (153)
T ss_dssp             HHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            444555667777888888887 6889999999999999999999999998888888889999999999999999999999


Q ss_pred             hCCCCCCCccCCCCCHHHHHHHcCCCcHHHHHHHhhCCC
Q 006616          600 TRGADPRAVNREGKTSLELAVESNFADSEVLAILSDSHG  638 (638)
Q Consensus       600 ~~gad~~~~d~~g~TpL~~A~~~g~~d~eiv~lLle~ga  638 (638)
                      .+|++++.+|.+|.||||+|+..|+  .++|++|+++|+
T Consensus        88 ~~~~~~~~~~~~g~T~L~~A~~~g~--~~iv~~ll~~ga  124 (153)
T d1awcb_          88 KHGADVNAKDMLKMTALHWATEHNH--QEVVELLIKYGA  124 (153)
T ss_dssp             TTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTC
T ss_pred             ccCCccccccccCchHHHhhhhcch--hheeeecccccc
Confidence            9999999999999999999999998  999999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=6.8e-15  Score=134.37  Aligned_cols=80  Identities=25%  Similarity=0.208  Sum_probs=74.5

Q ss_pred             cccccccccCCCCCCCcCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Q 006616          525 SSSGSLNLAGTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGAD  604 (638)
Q Consensus       525 ~~~~~~lL~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~lLl~~gad  604 (638)
                      ...++.+|+..|++++.+|.+|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus        60 ~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          60 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             THHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            44566778889999999999999999999999999999999999999999999999999999999999999999997654

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=6.2e-11  Score=104.61  Aligned_cols=100  Identities=11%  Similarity=0.159  Sum_probs=72.2

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ..++++|++.++... .+.|+.|||+|.++.++|+..+...                                     ..
T Consensus        26 G~li~~g~~~~~~~~-~~~~k~R~~fLF~~~Ll~~k~~~~~-------------------------------------~~   67 (132)
T d1v61a_          26 GNVIFMSQVVMQHGA-CEEKEERYFLLFSSVLIMLSASPRM-------------------------------------SG   67 (132)
T ss_dssp             CCCSCEEEEEBCCSS-SSCCCEEEEEECSSCEEEEECSSSS-------------------------------------SC
T ss_pred             cCEEEEEEEEEEEec-CCCcceEEEEEeCCEEEEEEEcCCC-------------------------------------ce
Confidence            346889999998554 5689999999996666655432211                                     01


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                      ......|.|..+.|....+....+|+|.|..+. ++|+|+|.|++|+++||++|+++|.
T Consensus        68 ~~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~eek~~Wv~~L~~~i~  126 (132)
T d1v61a_          68 FMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             CEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred             eEEeeecchhhccccccccccCccceEEEeCCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            122334666666666434444668999999884 7899999999999999999998874

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=1.2e-09  Score=92.67  Aligned_cols=104  Identities=14%  Similarity=0.113  Sum_probs=77.1

Q ss_pred             eeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcccc
Q 006616           99 TIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSA  178 (638)
Q Consensus        99 ~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  178 (638)
                      .+++|.|.+......+.=++||++|-++-+++........                                    .+..
T Consensus         4 li~eG~l~~~~~~~~k~~~~~~~fLF~d~Ll~~k~~~~~~------------------------------------~~~~   47 (109)
T d1zc3b1           4 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRR------------------------------------GMYR   47 (109)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTT------------------------------------SCEE
T ss_pred             EEEeeeEEEEccCCCCcceeEEEEEecCEEEEEEEcCCcc------------------------------------eEEE
Confidence            5789999987554444456889999988888776544221                                    1122


Q ss_pred             ccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhc
Q 006616          179 ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLS  238 (638)
Q Consensus       179 ~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~  238 (638)
                      ....+.|..+.|...++.....++|.|.++.++|+|+|+|++|+.+||++|+.++..+.+
T Consensus        48 ~~~~~~l~~~~v~~~~d~~~~~n~f~i~~~~~~~~~~a~s~~eK~~W~~~l~~a~~~~~~  107 (109)
T d1zc3b1          48 YNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD  107 (109)
T ss_dssp             EEEEEETTTCEEEEECCBTTBSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeEEeccceEEEEeecccccceEEEEccCCCEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence            344567766666543444456799999999999999999999999999999999987654

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=1.5e-08  Score=92.27  Aligned_cols=104  Identities=11%  Similarity=0.141  Sum_probs=70.4

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      ...+++|+|.+.+.. .+.|+.|||+|-++-++++.......                                    ..
T Consensus        25 r~Li~eG~L~~~~~~-~~k~~~r~~fLF~d~Ll~~k~~~~~~------------------------------------~~   67 (162)
T d2dfka2          25 SELIYTGEMAWIYQP-YGRNQQRVFFLFDHQMVLCKKDLIRR------------------------------------DI   67 (162)
T ss_dssp             CCEEEEEEEEEESST-TCCCEEEEEEEETTEEEEEEECSSCT------------------------------------TC
T ss_pred             ceEEEEEEEEEEEcC-CCCceeEEEEEeCCeEEEEEecCCCC------------------------------------Cc
Confidence            356899999998543 45699999999977666664432210                                    01


Q ss_pred             ccccceeecccceeecCCCC------CCCcceEEEecC--CeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          177 SAARHTVNLLTSTIKVDADQ------SDLRFCFRIISP--TKNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~------~~rr~cF~I~t~--~rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      ......+.|..+.+....+.      ...+++|.|..+  .++|.|+|+|++|+.+||++|+.++....
T Consensus        68 y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~~~~~  136 (162)
T d2dfka2          68 LYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQ  136 (162)
T ss_dssp             EEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEccccchhhceeeecccccccccCccccceEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            22233455655555432221      123589999865  46899999999999999999999876443

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.9e-07  Score=81.70  Aligned_cols=101  Identities=15%  Similarity=0.253  Sum_probs=69.6

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ..+++|.|.|.+..     +.|||+|-++-+++...+....+...                             ......
T Consensus        26 ~li~eG~l~~~~~~-----k~r~~fLF~d~Li~~k~~~~~~~~~~-----------------------------~~~~~y   71 (133)
T d1dbha2          26 EFIMEGTLTRVGAK-----HERHIFLFDGLMICCKSNHGQPRLPG-----------------------------ASNAEY   71 (133)
T ss_dssp             CEEEEEEEEETTCS-----SCEEEEEESSEEEEEEECTTCCCCTT-----------------------------SCCCSE
T ss_pred             EEEEEeEEEEecCC-----CeEEEEEecCeEEEEEeccccccccc-----------------------------CCCccE
Confidence            46899999998432     68999999777776654433211100                             000112


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecCC-eeEEEEeCCHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT-KNYTLQAESALDQMDWIEKITGV  232 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-rt~~lqA~se~e~~~Wi~ai~~~  232 (638)
                      .-...+.|..+.|.-..+..+.+|+|.|.++. +.|+|+|+|++|+.+||++|..+
T Consensus        72 ~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~~eK~~W~~~l~~~  127 (133)
T d1dbha2          72 RLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISL  127 (133)
T ss_dssp             EEEEEEESCSCEEEECCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEeeeecccccccccCCCcccccceeEEcCCCcEEEEEECCHHHHHHHHHHHHHH
Confidence            23445777777776544555668999998865 68999999999999999999764

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.1e-08  Score=85.14  Aligned_cols=115  Identities=22%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             cceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCcc
Q 006616           97 VQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEK  176 (638)
Q Consensus        97 ~~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  176 (638)
                      -..|++|-|+|..++     +.|||+|-+|-+||-..+.........                       .......+..
T Consensus        23 R~li~eG~L~k~~~~-----k~r~~FLFnD~Ll~tK~~~~~~~~~~~-----------------------~~~~~~~~~~   74 (142)
T d1ki1b2          23 RKFLHSGKLYKAKNN-----KELYGFLFNDFLLLTQITKPLGSSGTD-----------------------KVFSPKSNLQ   74 (142)
T ss_dssp             CCEEEECCCBCSSSC-----CCCEEEEESSEEEEEEEECC------------------------------CCSCSSCCEE
T ss_pred             eEEEEeeEEEEecCC-----CEEEEEEecCEEEEEEeccccceeccc-----------------------cccccCCcee
Confidence            456899999987332     589999997777765544322110000                       0000000112


Q ss_pred             ccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHhcc
Q 006616          177 SAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS  239 (638)
Q Consensus       177 ~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~~~  239 (638)
                      .+....+.|..+.+....+.....+.|.+..+.++|+|+|+|++|+..||++|+.||....+.
T Consensus        75 ~~~~~~i~l~~l~v~~~~d~~~~~~~~~~~~~~~~~~l~a~s~~ek~~W~~~I~~Ai~~~~e~  137 (142)
T d1ki1b2          75 YMYKTPIFLNEVLVKLPTDPSGDEPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIET  137 (142)
T ss_dssp             EECSSCEEGGGEEEECCSSSCCC---CEEEETTEEEECBCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcccchhhheeeccCCcccceeEEEecCCCEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            233445667666666443333445789999999999999999999999999999999887765

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=1.5e-07  Score=80.62  Aligned_cols=35  Identities=26%  Similarity=0.536  Sum_probs=30.4

Q ss_pred             CcceEEEe--cCCeeEEEEeCCHHHHHHHHHHHHHHH
Q 006616          199 LRFCFRII--SPTKNYTLQAESALDQMDWIEKITGVI  233 (638)
Q Consensus       199 rr~cF~I~--t~~rt~~lqA~se~e~~~Wi~ai~~~i  233 (638)
                      ...||.|+  +..+++.|.|+|+++++.||.+|+..+
T Consensus        82 ~~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          82 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHHHh
Confidence            35799998  556899999999999999999998764

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.2e-06  Score=75.09  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             eeEEEEEEeecCC-CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           99 TIRQGYLSKRSSN-LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        99 ~~k~GyL~Kr~~~-~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .+++|.|....+. .++.++.|||+|-++.+++...+....  +                                ....
T Consensus        13 Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~--~--------------------------------~~~~   58 (121)
T d1ntya2          13 LILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS--G--------------------------------RSKY   58 (121)
T ss_dssp             EEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT--C--------------------------------CEEE
T ss_pred             EEEEeEEEEEcccccCCCCcEEEEEeeCCeEEEEEEecCCC--C--------------------------------Ccee
Confidence            6899999865433 345689999999977777755432110  0                                0111


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEec-----CCeeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIIS-----PTKNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t-----~~rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      .....+.+....+....  .+.+++|.|..     +...|+|+|.|+++++.||++|+.+|..
T Consensus        59 ~~~~~~~~~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~e  119 (121)
T d1ntya2          59 LYKSKLFTSELGVTEHV--EGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE  119 (121)
T ss_dssp             EEEEEEEGGGEEEECCC--TTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeEEecceEEEEcC--CCCCceEEEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            22233455444444222  23468899864     3467999999999999999999998864

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.9e-06  Score=75.77  Aligned_cols=112  Identities=19%  Similarity=0.183  Sum_probs=64.1

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      .-+++|.|.++.+  ++..+.|||+|-++-+++...+.........                 ..+...     ......
T Consensus        24 ~Li~eG~L~~k~~--~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~-----------------~~~~~~-----~~~~~~   79 (140)
T d1xcga2          24 KMIHEGPLTWRIS--KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCH-----------------SKTAVG-----SSDSKQ   79 (140)
T ss_dssp             CEEEEEEEEECCS--SSCCCEEEEEEESSEEEEEEECSSCEECCC-----------------------------------
T ss_pred             eEEEEeeEEEEec--CCCceEEEEEEecCeEEEEEecccceeeccc-----------------cccccc-----ccccee
Confidence            5689999975433  3568899999997766665444321000000                 000000     000111


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecC-----CeeEEEEeCCHHHHHHHHHHHHHHHHHH
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISP-----TKNYTLQAESALDQMDWIEKITGVIASL  236 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~-----~rt~~lqA~se~e~~~Wi~ai~~~i~~~  236 (638)
                      .....+.+....++...   +..++|.|+..     ..+|+|+|.|++|+.+||++|+.+|..+
T Consensus        80 ~~~~~~~l~~~~~~~~~---~~~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~nA  140 (140)
T d1xcga2          80 TFSPVLKLNAVLIRSVA---TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA  140 (140)
T ss_dssp             CCCSEEEGGGEEEEECS---SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             eecceEecceEEEecCC---CCCCeEEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHHcC
Confidence            11122333333333222   23678988753     3689999999999999999999999763

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=98.07  E-value=1.7e-05  Score=66.80  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=62.5

Q ss_pred             eEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccccc
Q 006616          100 IRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKSAA  179 (638)
Q Consensus       100 ~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (638)
                      +.+|-|..+.+.  +.=+.||++|-++-+++...+...........                      ..+...+.....
T Consensus         2 i~eG~L~~~~~~--~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~----------------------~~~~~~~~~~~~   57 (114)
T d1txda2           2 IHEGPLVWKVNR--DKTIDLYTLLLEDILVLLQKQDDRLVLRCHSK----------------------ILASTADSKHTF   57 (114)
T ss_dssp             EEEEEEEEESSS--SCBCCEEEEEESSEEEEEEEETTEEECCC-----------------------------------CC
T ss_pred             ceeeeEEEEecC--CCceEEEEEEecCeEEEEEecccccccccccc----------------------cccccccceeee
Confidence            679999865332  22468999999666666554432210000000                      000000122222


Q ss_pred             cceeecccceeecCCCCCCCcceEEEecCC---eeEEEEeCCHHHHHHHHHHHHHHHHH
Q 006616          180 RHTVNLLTSTIKVDADQSDLRFCFRIISPT---KNYTLQAESALDQMDWIEKITGVIAS  235 (638)
Q Consensus       180 ~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~---rt~~lqA~se~e~~~Wi~ai~~~i~~  235 (638)
                      ...|.+....++-..  .+.+.+|.|.+.+   ..|+|||.|+++++.||++|+.++++
T Consensus        58 ~~~i~l~~l~v~e~~--~d~~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~s  114 (114)
T d1txda2          58 SPVIKLSTVLVRQVA--TDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAAS  114 (114)
T ss_dssp             CSEEEGGGEEEEECC--C-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEcccEEEEEcC--CCCCCEEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence            333555555555322  2447789988754   47999999999999999999998763

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=7.8e-05  Score=65.66  Aligned_cols=110  Identities=16%  Similarity=0.257  Sum_probs=64.3

Q ss_pred             ceeEEEEEEeecCC----------CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccc
Q 006616           98 QTIRQGYLSKRSSN----------LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSH  167 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~----------~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~  167 (638)
                      ..+++|.|....+.          ..+.=+.|||+|-++-+++............                         
T Consensus        12 ~Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~-------------------------   66 (147)
T d1kz7a2          12 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYE-------------------------   66 (147)
T ss_dssp             CEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCC-------------------------
T ss_pred             CEEEeeeEEEEecCccchhhhhhhhccCCceEEEEEecCcEEEEEecccCCcccc-------------------------
Confidence            36789999743221          1223478999999766666544332110000                         


Q ss_pred             cCCCCCCccccccceeecccceeecCCCCCCCcceEEEecCCeeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          168 YHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       168 ~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                           ..........+.+....+....+..+.+|.|.+..+..+|+|+|.|+++++.||++|+.+|....
T Consensus        67 -----~~~~y~~k~~~~~~~~~v~~~~~~~~~~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l~~q~  131 (147)
T d1kz7a2          67 -----KAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQL  131 (147)
T ss_dssp             -----CSCEEEEEEEEEGGGEEEECCBTTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             -----cCceEEEeeEEecCCceeEecCCCCcceEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence                 00111122334444444443223323445555556778999999999999999999999886554

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.69  E-value=5.6e-05  Score=63.86  Aligned_cols=100  Identities=10%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             ceeEEEEEEeecCCCCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCccc
Q 006616           98 QTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDEKS  177 (638)
Q Consensus        98 ~~~k~GyL~Kr~~~~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  177 (638)
                      ..+++|++....+. .+. +.|||+|-++.++++..+....                                   ....
T Consensus         9 ~ll~~~~f~v~~~~-~k~-k~R~vFLF~~~ll~~K~~~~~~-----------------------------------~~~y   51 (119)
T d1fhoa_           9 RIIRHDAFQVWEGD-EPP-KLRYVFLFRNKIMFTEQDASTS-----------------------------------PPSY   51 (119)
T ss_dssp             CSSEEEEEEECSTT-CSC-EEEEEEEETTEEEEEEECCSSS-----------------------------------SCCC
T ss_pred             ceEEEeEEEEEeCC-CCc-eEEEEEEEcCeEEEEEeccCCC-----------------------------------CceE
Confidence            35788988887554 233 4677888767777765433210                                   0112


Q ss_pred             cccceeecccceeecCCCCCCCcceEEEecCC-------eeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          178 AARHTVNLLTSTIKVDADQSDLRFCFRIISPT-------KNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       178 ~~~~~i~l~~~~v~~~~~~~~rr~cF~I~t~~-------rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      .....|.|....|.-...+   ..+|.|...+       .++.++|.|+++++.|+++|...+....
T Consensus        52 ~~K~~i~l~~~~v~e~~gd---~~~F~i~~~~~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~~~~  115 (119)
T d1fhoa_          52 THYSSIRLDKYNIRQHTTD---EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKYA  115 (119)
T ss_dssp             SSCCEEESSSCEEEEECTT---CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHHH
T ss_pred             EEecEEECCceEEEEcCCC---CcEEEEEeCCCCCCcceEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            2344566766666643222   3457776543       2577888999999999999988776544

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=3.6e-05  Score=75.01  Aligned_cols=56  Identities=23%  Similarity=0.434  Sum_probs=50.1

Q ss_pred             ChhhhhHHHhHHHHH-hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 006616            1 MDAHLRYFKQGYELL-HQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDR   56 (638)
Q Consensus         1 ~~a~~~ff~~G~~l~-~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   56 (638)
                      |+||++|||+|++.+ +++++|+++|..+++++++.++.+++.+.+.|+++..+.+.
T Consensus       199 ~~a~~~ff~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (268)
T d2elba1         199 MQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDP  255 (268)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            589999999999987 68999999999999999999999998888888887766653

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.024  Score=44.52  Aligned_cols=90  Identities=17%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             eEEEEEEeecCC----CCCCceeeEEEEecCceEEEEecCCCCCCCCCCccccccCcCcccCCccccccccccCCCCCCc
Q 006616          100 IRQGYLSKRSSN----LRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSGSQLSSQRNSSELGSGLLSRWLSSHYHGGVHDE  175 (638)
Q Consensus       100 ~k~GyL~Kr~~~----~~~~WkrRwfvL~~~~~l~y~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  175 (638)
                      -|.|.|..+.+.    .+..|.|-...|..+.+ ......                                      | 
T Consensus         7 ~rsGlLE~~~~~~~~~~~~rW~rVl~~L~ed~L-t~s~~~--------------------------------------d-   46 (105)
T d2adza1           7 PRTGLLELRCGAGSGAGGERWQRVLLSLAEDAL-TVSPLS--------------------------------------E-   46 (105)
T ss_dssp             CEEEEEEECCCCSSSSSCCCCEEEEEEEETTEE-EEESSC--------------------------------------S-
T ss_pred             CccceEEEeeccCCCccccceeeeeeecccceE-Eeeccc--------------------------------------c-
Confidence            379999988543    34579998888875443 321111                                      1 


Q ss_pred             cccccceeecccceeec--CCCCCCCcceEEEecCC--eeEEEEeCCHHHHHHHHHHHHHHHH
Q 006616          176 KSAARHTVNLLTSTIKV--DADQSDLRFCFRIISPT--KNYTLQAESALDQMDWIEKITGVIA  234 (638)
Q Consensus       176 ~~~~~~~i~l~~~~v~~--~~~~~~rr~cF~I~t~~--rt~~lqA~se~e~~~Wi~ai~~~i~  234 (638)
                          ...|.|+.|-|..  .+.+++ ..+|+|.+|+  .+..|+|.+..+.+.|..+|+..|.
T Consensus        47 ----~k~IPLKmcyvtR~~~~~D~E-nR~lElhSpDG~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          47 ----AKHVSLKMAYVSRRCTPTDPE-PRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             ----CEEEETTTCEEEEECCSSCCS-SCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             ----cceeeeeeEEeeecccCCCCc-ccEEEEECCCCCceEEEEcCCHHHHHHHHHHHHHhhc
Confidence                1236666665542  222333 4579999998  4889999999999999999998763

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.039  Score=46.56  Aligned_cols=38  Identities=11%  Similarity=0.127  Sum_probs=31.4

Q ss_pred             cceEEEecCC-----eeEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 006616          200 RFCFRIISPT-----KNYTLQAESALDQMDWIEKITGVIASLL  237 (638)
Q Consensus       200 r~cF~I~t~~-----rt~~lqA~se~e~~~Wi~ai~~~i~~~~  237 (638)
                      ..||.|+...     ++.+|-|.|+++.+.|+..|+..+...+
T Consensus        86 ~~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L~~n~~  128 (131)
T d2zkmx3          86 LKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHPL  128 (131)
T ss_dssp             GTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCTT
T ss_pred             ccEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHHHhhHH
Confidence            4699999853     6788999999999999999998775433

>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: RecO C-terminal domain-like
domain: Recombinational repair protein RecO, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.42  E-value=0.35  Score=41.63  Aligned_cols=55  Identities=25%  Similarity=0.607  Sum_probs=40.0

Q ss_pred             ccCCcccccCCCCCCCceecccceeEeccchhhhccCCCccceeEEeecCCCccCHHHHHHHHHhchHHHHHH
Q 006616          315 VCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSV  387 (638)
Q Consensus       315 ~~~n~~c~dC~~~~p~w~~~~~g~~~C~~Csg~hr~lg~~~skvrsl~ld~~~~~~~~~~~~~~~gN~~~n~i  387 (638)
                      .|.-..|+.||.+.+.|.+..-|.++|..|.+..                  .-+++.+..+..+........
T Consensus        67 ~P~l~~C~~cg~~~~~~f~~~~Gg~~C~~c~~~~------------------~~~~~~~~~l~~~~~~~~~~~  121 (157)
T d1u5ka2          67 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP------------------PYPPAVLDFLRHAVRRTVRAS  121 (157)
T ss_dssp             CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC------------------CCCHHHHHHHHHTTTSCHHHH
T ss_pred             CCChhhHhcCCCCCCCcccccCCeeECCCCCCcC------------------CCcchHHHHHHHHcccChhhh
Confidence            3677899999999999999999999999995311                  125666677766544444333