Citrus Sinensis ID: 006637

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------

MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQIDGPSKSSGSVSLKDQLKKRTQEINDYRGKLQSDPNVKNVYNRNNSFTSSKETKPKSTLTDSDWTELLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKPSDGDESGSSGRSSSVELQNDGKNINGQDVKPQDGRSKENDDVKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFSLENINNTASL

ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHcccccHHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccc

cccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccHHccccccccccccccccccccccccccccccccccccccHHHcccccccccccccHHHHHHccccccccccHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccc

MAHWISNKLKVAETFLQQIDQQAAEslgkgdkprsedpqidgpskssgsvslKDQLKKRTQEINDYrgklqsdpnvknvynrnnsftssketkpkstltdsdwtellgtpdkglslgnvrkderrrqggtlgnrnrkinknssliksgwskvnggnkpsdgdesgssgrsssvelqndgkningqdvkpqdgrskenddvkknsrlemvsvpgkvdafsdvkigmndvdgrlpsnirgnhksnagIRASvlndskrgssstsedgsdsnsdsssseseSEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELsqrnsnthqTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMtrkeiedpTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLdenkpvtgsssrdlefgawdlsqsnlrpLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHsqssaearsgavfsleninntasl

MAHWISNKLKVAETFLQQIDQQAAeslgkgdkprsedpqidgpskssgsvslkdqLKKRTQEINdyrgklqsdpnvknvynrnnsftssketkpkstltdsdwtellgtpdkglslgnvrkderrrqggtlgnrnrkinknssliksgwskvnggnkpsdgdesgssgRSSSVelqndgkningqdvkpqdgrskenddvkknsrlemvsvpgkvdafsdvkigmndvdgrlpsnirgnhksnagirasvlndskrgssstsedgsdsnsdsssseseserereERRKLKEKILAEKaaakagdaikerENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAheelsqrnsnthqtgiyLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEgniemtrkeiedptevEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVsrlldenkpvtgsssrdlefgawdlsqsnLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEArsgavfsleninntasl

MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQIDGPSKSSGSVSLKDQLKKRTQEINDYRGKLQSDPNVKNVYNRNNSFTSSKETKPKSTLTDSDWTELLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKPsdgdesgssgrsssVELQNDGKNINGQDVKPQDGRSKENDDVKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNdskrgssstsedgsdsnsdsssseseserereerrklkekilaekaaakagdaikerENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETanadlaralaaaQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFSLENINNTASL

********LKVAETF******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************L******************************************************TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDK************************LKRRLGQLTDHLIQK***********ATLAFRIEAVSRL***************EFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLS*************************

*AHWISN*L**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS****************IN*****

MAHWISNKLKVAETFLQQIDQQ***********************************KRTQEINDYRGKLQSDPNVKNVYNRNN***************DSDWTELLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKV**********************LQNDGKNINGQDVK***********VKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVL************************************KLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS********GAVFSLENINNTASL

**HWISNKLKVAETFLQQIDQQAAESL*********************SVSLKD*L**RT*********L*S******************************************************************************************************************************D*KKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRGSS*************SSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSS******G**DLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSS****SGAVFS***IN*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii

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MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQIDGPSKSSGSVSLKDQLKKRTQEINDYRGKLQSDPNVKNVYNRNNSFTSSKETKPKSTLTDSDWTELLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKPSDGDESGSSGRSSSVELQNDGKNINGQDVKPQDGRSKENDDVKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRGSSSTSEDGSDSNSDxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKAGDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVKEASELQTSMMETMDAFELExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSNTHQTGIYLKRLAASKGVEFExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFSLENINNTASL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		637	2.2.26 [Sep-21-2011]
B0F9L7		668	Golgin candidate 2 OS=Ara	yes	no	0.971	0.926	0.495	1e-142
Q7SXE4		760	Golgin subfamily A member	yes	no	0.541	0.453	0.256	2e-15
Q9QYE6		729	Golgin subfamily A member	yes	no	0.488	0.426	0.259	8e-15
Q3ZU82		728	Golgin subfamily A member	yes	no	0.285	0.25	0.298	2e-14
Q8S8N9		707	Golgin candidate 1 OS=Ara	no	no	0.497	0.448	0.266	2e-14
Q8TBA6		731	Golgin subfamily A member	yes	no	0.481	0.419	0.267	7e-14
Q5JLY8		709	Golgin-84 OS=Oryza sativa	no	no	0.397	0.356	0.270	9e-13
Q8SZ63		516	Golgin-84 OS=Drosophila m	yes	no	0.186	0.230	0.291	2e-07

>sp\|B0F9L7\|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1	Back alignment and function desciption

 Score =  504 bits (1299), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 338/682 (49%), Positives = 425/682 (62%), Gaps = 63/682 (9%)

Query: 1   MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQID-GPSKSSGSVSLKDQLKKR 59
           MA+WIS+KLK AET LQQ+DQQAA+SL K +K  + D   +  P   S  VSLKDQL+K+
Sbjct: 1   MANWISSKLKAAETILQQLDQQAADSLRKDEKSETHDEVFETSPKSGSSPVSLKDQLRKK 60

Query: 60  TQEIND-----YRGKLQSDPNV----KNVYNRNNSF-----TSSKETKPKSTLTDSDWTE 105
           T E +D      R   +  P+     K V   + S       S   T+  + LTD+DWTE
Sbjct: 61  TYEGSDSGSGSQRNSTEQKPSYLSSSKKVRKPDQSHERTSAPSQSLTQDNTKLTDNDWTE 120

Query: 106 LLGTPDKGLSLGNVRKDERRRQGGTLGNRNRKINKNSSLIKSGWSKVNGGNKP--SDGDE 163
           LL TP++  S    R       GGT   R         L K G    N G  P  SDG +
Sbjct: 121 LLSTPNQRTSTSTSRSP-----GGTSAIRG--------LKKDGKRHGNLGKNPLVSDGKK 167

Query: 164 SGSS------GRSSSVELQNDGKNINGQDVKPQDGRSKEND---DVKKNS--RLEMVSVP 212
           S SS      GR    + Q + +  + +   P D   K  +   D+  NS  +     V 
Sbjct: 168 SSSSNVVNSRGRP---QKQTNKEPSDKEVSSPSDADMKNRNAPRDIFVNSTHKESEKDVS 224

Query: 213 GKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRG--SSSTSEDG----- 265
           GK     D +   N+   R  S   G        R+SV     R   S S   DG     
Sbjct: 225 GKTPPLDDSRRSANETLPRETSPSVGKRDGRESRRSSVWGKQVREEVSQSNVSDGLTRKE 284

Query: 266 --------SDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLE 317
                          SS++SE ER+REERR+ +E++ AEK A KA   IKERENMVARLE
Sbjct: 285 SSLSSDESESDYESDSSTDSERERQREERRRRRERVFAEKVATKAVAVIKERENMVARLE 344

Query: 318 GEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETAN 377
           GEK SLEKI+EERAKQQ +EA+ELQT+MMET++A +LEKQ+HNNTRME L  LA LE  N
Sbjct: 345 GEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAADLEKQKHNNTRMEVLTRLAGLEAEN 404

Query: 378 ADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKG 437
           A+L R+LAA QKKLE + +QVA L+QQ ELKE   EEL +   N    G  LK+L  S+G
Sbjct: 405 AELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRNTFNIGGRGTTLKQLDTSRG 464

Query: 438 VEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDH 497
            +FE ++LEAE + + DKI +L+DKA KLE +IEM RKE+E+PTEVEIELKRRL QLTDH
Sbjct: 465 DKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEMMRKELEEPTEVEIELKRRLNQLTDH 524

Query: 498 LIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPV--TGSSSRDLEFGAWDLSQSNLRPL 555
           LIQKQ+QVEALSSEKAT+ FRIEAVSRL++ENK +  T +SS+DLE G W+LS S  +P 
Sbjct: 525 LIQKQSQVEALSSEKATILFRIEAVSRLIEENKGMSATEASSQDLEAGDWELSGSKFKPA 584

Query: 556 FEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS- 614
           F++KIRSGKKH+G L+ QL++IF++G VFLRRNP AK+W++VYLVCLHLWV+YILLSHS 
Sbjct: 585 FQDKIRSGKKHLGWLVMQLNAIFISGTVFLRRNPTAKIWAVVYLVCLHLWVLYILLSHSD 644

Query: 615 -QSSAEARSGAVFSLENINNTA 635
             SS E RSGAV SLEN +N++
Sbjct: 645 ASSSGELRSGAVISLENFSNSS 666

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q7SXE4\|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1	Back alignment and function description

>sp\|Q9QYE6\|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2	Back alignment and function description

>sp\|Q3ZU82\|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1 SV=1	Back alignment and function description

>sp\|Q8S8N9\|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2	Back alignment and function description

>sp\|Q8TBA6\|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3	Back alignment and function description

>sp\|Q5JLY8\|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1	Back alignment and function description

>sp\|Q8SZ63\|GOGA5_DROME Golgin-84 OS=Drosophila melanogaster GN=Golgin84 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		637
225456134		682	PREDICTED: golgin candidate 2-like [Viti	0.984	0.919	0.562	1e-173
255583467		691	Golgin-84, putative [Ricinus communis] g	0.949	0.875	0.553	1e-168
356527890		689	PREDICTED: golgin candidate 2-like [Glyc	0.982	0.908	0.527	1e-164
356511261		689	PREDICTED: golgin candidate 2-like [Glyc	0.971	0.898	0.531	1e-156
357521611		667	Golgin candidate [Medicago truncatula] g	0.974	0.931	0.514	1e-149
224135521		567	predicted protein [Populus trichocarpa]	0.546	0.613	0.733	1e-145
449497585		662	PREDICTED: golgin candidate 2-like [Cucu	0.987	0.950	0.516	1e-143
30685736		668	golgin candidate 2 [Arabidopsis thaliana	0.971	0.926	0.495	1e-140
449439557		716	PREDICTED: golgin candidate 2-like [Cucu	0.995	0.885	0.489	1e-139
9719733		654	EST gb\|AI997943 comes from this gene [Ar	0.941	0.917	0.483	1e-133

>gi\|225456134\|ref\|XP_002278278.1\| PREDICTED: golgin candidate 2-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 389/692 (56%), Positives = 468/692 (67%), Gaps = 65/692 (9%)

Query: 1   MAHWISNKLKVAETFLQQIDQQAAESLGKGDKPRSEDPQIDGPSKSSGSVSLKDQLKKRT 60
           MA WIS+KLKVAET LQQIDQQAAESLGK ++P+S++     P+KS G + LKDQLKK+T
Sbjct: 1   MAGWISSKLKVAETLLQQIDQQAAESLGKNERPQSDELDEKIPAKSGGVLPLKDQLKKKT 60

Query: 61  QEINDYRGKLQSDPNVKNVYN---RNNSFTSSKE--TKPKSTLTDSDWTELLGTPDKGLS 115
           QE  D++GKL SDPNV NV N   R+   TS  +  + P+S LTDSDWTELL TP++   
Sbjct: 61  QESYDFQGKLHSDPNV-NVLNSQDRDKEVTSPSKPFSSPRSNLTDSDWTELLSTPNQETP 119

Query: 116 LG-----------NVRKDERRRQGGTL------GNRNRKINKNSSLIKSGWSKVNGGNKP 158
            G            +RKD RR+    L        RN + N NS+      S V  GN+ 
Sbjct: 120 FGANRTNGTSGIRGLRKDGRRQASSGLNLSGLEAKRNYRSN-NSASKPQRRSDVGPGNRE 178

Query: 159 SDG-------DE-----SGSSGRSSSVELQNDGKNINGQ----------DVKPQDGRSKE 196
           + G       DE     S S  R+SS EL+NDGK +  Q          D  P+    K+
Sbjct: 179 NAGGLDRKLSDEKELGRSDSVDRTSSAELRNDGKYVEAQESELVMVVGDDSNPERSVVKD 238

Query: 197 N-----------DDVKKNSRLEMVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAG 245
           +             V KN  LE   V  + D   D+   +ND   RL        +SNAG
Sbjct: 239 SVEDGGRIISKGHSVDKNHHLETKLVAERGDRIPDMNKAINDEQKRL-------GQSNAG 291

Query: 246 IRASVLNDSKRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDA 305
           + +SV  + K  +S + E        +SSS+SESER REER++ +++ILAEK AAKA  A
Sbjct: 292 LGSSVSLELKGTTSVSDERSDSDTDSASSSDSESERIREERKRRRKQILAEKQAAKAVAA 351

Query: 306 IKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRME 365
           IKERENMVARLEGEK+SLEKILEER KQQ +EASELQT+MMETM+A ELEKQ+HNNTRME
Sbjct: 352 IKERENMVARLEGEKESLEKILEEREKQQAQEASELQTTMMETMEAVELEKQKHNNTRME 411

Query: 366 ALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQT 425
           AL  LAKLET NA+LAR+LA AQ  LE+E N+VAE+RQQ ELKEVA EE  +R  N HQ 
Sbjct: 412 ALARLAKLETVNAELARSLATAQWNLEVEVNRVAEIRQQIELKEVALEEQRRRIPNAHQM 471

Query: 426 GIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEI 485
           G  L  L A+KGVEFE+EILEAEY+FI DKI  L+DKAKKLE NIEMTRKE+E PT VE+
Sbjct: 472 GTSLSHLVAAKGVEFEKEILEAEYSFITDKIGWLQDKAKKLEANIEMTRKEMESPTVVEV 531

Query: 486 ELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAW 545
           ELKRRL QLTDHLIQKQAQVEALSSEKATL FRIEAVSRLL+ENK +  S   DLE G+W
Sbjct: 532 ELKRRLFQLTDHLIQKQAQVEALSSEKATLLFRIEAVSRLLEENKLLLLSRD-DLESGSW 590

Query: 546 DLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLW 605
           D+S S L+PL E++IRSG +H  SL++QLD+IF AG VFLRRN  AK W+L YLV LHLW
Sbjct: 591 DISDSKLKPLLEDRIRSGGQHFWSLMRQLDTIFSAGAVFLRRNSTAKWWALFYLVSLHLW 650

Query: 606 VIYILLSHSQSSAEARSGAVFSLENINNTASL 637
           VIYIL SHS+++ E RSGAV SLENIN+T  +
Sbjct: 651 VIYILTSHSETTVETRSGAVMSLENINSTGGV 682

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255583467\|ref\|XP_002532492.1\| Golgin-84, putative [Ricinus communis] gi\|223527791\|gb\|EEF29891.1\| Golgin-84, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356527890\|ref\|XP_003532539.1\| PREDICTED: golgin candidate 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356511261\|ref\|XP_003524345.1\| PREDICTED: golgin candidate 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|357521611\|ref\|XP_003631094.1\| Golgin candidate [Medicago truncatula] gi\|355525116\|gb\|AET05570.1\| Golgin candidate [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224135521\|ref\|XP_002322094.1\| predicted protein [Populus trichocarpa] gi\|222869090\|gb\|EEF06221.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449497585\|ref\|XP_004160442.1\| PREDICTED: golgin candidate 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|30685736\|ref\|NP_173257.2\| golgin candidate 2 [Arabidopsis thaliana] gi\|205779900\|sp\|B0F9L7.1\|GOGC2_ARATH RecName: Full=Golgin candidate 2; Short=AtGC2 gi\|164708706\|gb\|ABY67250.1\| putative golgin-84-like protein [Arabidopsis thaliana] gi\|332191564\|gb\|AEE29685.1\| golgin candidate 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449439557\|ref\|XP_004137552.1\| PREDICTED: golgin candidate 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|9719733\|gb\|AAF97835.1\|AC034107_18 EST gb\|AI997943 comes from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		637
TAIR\|locus:2194075		668	GC2 "AT1G18190" [Arabidopsis t	0.511	0.488	0.639	9.1e-126
UNIPROTKB\|E1C947		735	GOLGA5 "Uncharacterized protei	0.448	0.389	0.270	4e-21
UNIPROTKB\|Q6GNT7		722	golga5 "Golgin subfamily A mem	0.433	0.382	0.269	2.9e-18
UNIPROTKB\|A5D7A5		732	GOLGA5 "GOLGA5 protein" [Bos t	0.433	0.377	0.275	3.5e-18
UNIPROTKB\|Q8TBA6		731	GOLGA5 "Golgin subfamily A mem	0.433	0.377	0.269	4.8e-18
RGD\|1308163		728	Golga5 "golgin A5" [Rattus nor	0.453	0.396	0.266	5.6e-18
UNIPROTKB\|E2QWJ2		731	GOLGA5 "Uncharacterized protei	0.433	0.377	0.266	1.1e-17
MGI\|MGI:1351475		729	Golga5 "golgi autoantigen, gol	0.453	0.396	0.257	2.1e-17
UNIPROTKB\|F1SD67		729	GOLGA5 "Uncharacterized protei	0.433	0.378	0.269	3.2e-17
ZFIN\|ZDB-GENE-040426-2749		760	golga5 "golgi autoantigen, gol	0.436	0.365	0.275	1.2e-16

TAIR\|locus:2194075 GC2 "AT1G18190" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1029 (367.3 bits), Expect = 9.1e-126, Sum P(2) = 9.1e-126
 Identities = 211/330 (63%), Positives = 259/330 (78%)

Query:   310 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQL 369
             ENMVARLEGEK SLEKI+EERAKQQ +EA+ELQT+MMET++A +LEKQ+HNNTRME L  
Sbjct:   337 ENMVARLEGEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAADLEKQKHNNTRMEVLTR 396

Query:   370 LAKLETXXXXXXXXXXXXQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL 429
             LA LE             QKKLE + +QVA L+QQ ELKE   EEL +   N    G  L
Sbjct:   397 LAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRNTFNIGGRGTTL 456

Query:   430 KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR 489
             K+L  S+G +FE ++LEAE + + DKI +L+DKA KLE +IEM RKE+E+PTEVEIELKR
Sbjct:   457 KQLDTSRGDKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEMMRKELEEPTEVEIELKR 516

Query:   490 RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPV--TGSSSRDLEFGAWDL 547
             RL QLTDHLIQKQ+QVEALSSEKAT+ FRIEAVSRL++ENK +  T +SS+DLE G W+L
Sbjct:   517 RLNQLTDHLIQKQSQVEALSSEKATILFRIEAVSRLIEENKGMSATEASSQDLEAGDWEL 576

Query:   548 SQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVI 607
             S S  +P F++KIRSGKKH+G L+ QL++IF++G VFLRRNP AK+W++VYLVCLHLWV+
Sbjct:   577 SGSKFKPAFQDKIRSGKKHLGWLVMQLNAIFISGTVFLRRNPTAKIWAVVYLVCLHLWVL 636

Query:   608 YILLSHSQ--SSAEARSGAVFSLENINNTA 635
             YILLSHS   SS E RSGAV SLEN +N++
Sbjct:   637 YILLSHSDASSSGELRSGAVISLENFSNSS 666

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009630 "gravitropism" evidence=RCA

UNIPROTKB\|E1C947 GOLGA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6GNT7 golga5 "Golgin subfamily A member 5" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7A5 GOLGA5 "GOLGA5 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TBA6 GOLGA5 "Golgin subfamily A member 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1308163 Golga5 "golgin A5" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QWJ2 GOLGA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1351475 Golga5 "golgi autoantigen, golgin subfamily a, 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SD67 GOLGA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-2749 golga5 "golgi autoantigen, golgin subfamily a, 5" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0F9L7	GOGC2_ARATH	No assigned EC number	0.4956	0.9717	0.9266	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017812001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (657 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		637
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-04
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	9e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	0.002
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	0.003
pfam09787		509	pfam09787, Golgin_A5, Golgin subfamily A member 5	0.003

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

 Score = 55.9 bits (135), Expect = 6e-08
 Identities = 51/289 (17%), Positives = 110/289 (38%), Gaps = 21/289 (7%)

Query: 255 KRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVA 314
             GS +       S+        E E E  E     EK+  E  + K  + ++  E+++ 
Sbjct: 648 PSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLK--NELRSLEDLLE 705

Query: 315 RLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLE 374
            L   +    +   E  K+++    E    +   ++  E E +       E  + L +LE
Sbjct: 706 ELR-RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 375 TAN-------ADLARALAAAQKKLEMETNQVAELRQQ-TELKEVAHEELSQRNSNTHQTG 426
                     A L   +   ++K +    ++ EL ++  E +        +  S   +  
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 427 IYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE-------IED 479
              + +     +E E E LE +   + +++ +LE + ++L+  +E    E       +++
Sbjct: 825 RLEQEIEE---LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881

Query: 480 PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 528
             E + EL+  L +L   L + + ++E L      L  ++E +   L E
Sbjct: 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930

Length = 1163

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		637
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	99.96
KOG4677		554	consensus Golgi integral membrane protein [Intrace	99.95
PF08172		248	CASP_C: CASP C terminal; InterPro: IPR012955 This	99.65
KOG0963		629	consensus Transcription factor/CCAAT displacement	99.17
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	97.94
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	97.9
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	97.85
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.56
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.51
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.46
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	97.44
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	97.36
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.32
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	97.28
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.25
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	97.21
PRK02224		880	chromosome segregation protein; Provisional	97.01
PHA02562		562	46 endonuclease subunit; Provisional	96.99
KOG1937		521	consensus Uncharacterized conserved protein [Funct	96.8
PRK11637		428	AmiB activator; Provisional	96.8
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	96.8
PRK04863		1486	mukB cell division protein MukB; Provisional	96.73
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	96.59
PRK09039		343	hypothetical protein; Validated	96.53
PHA02562		562	46 endonuclease subunit; Provisional	96.51
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.48
PRK02224		880	chromosome segregation protein; Provisional	96.34
PRK09039		343	hypothetical protein; Validated	96.2
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	96.2
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.19
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	96.14
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	96.11
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	95.98
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	95.86
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	95.85
KOG0971		1243	consensus Microtubule-associated protein dynactin	95.82
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	95.78
PRK03918		880	chromosome segregation protein; Provisional	95.65
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	95.65
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	95.63
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	95.55
KOG0996		1293	consensus Structural maintenance of chromosome pro	95.37
PF10168		717	Nup88: Nuclear pore component; InterPro: IPR019321	95.32
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.29
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	95.27
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	95.24
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	95.01
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	94.82
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	94.71
PRK11281		1113	hypothetical protein; Provisional	94.68
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	94.66
PRK10929		1109	putative mechanosensitive channel protein; Provisi	94.64
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.62
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	94.57
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	94.34
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.32
KOG0996		1293	consensus Structural maintenance of chromosome pro	94.23
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.2
PRK11637		428	AmiB activator; Provisional	94.18
KOG0980		980	consensus Actin-binding protein SLA2/Huntingtin-in	93.89
KOG0971		1243	consensus Microtubule-associated protein dynactin	93.59
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	93.47
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	93.45
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.16
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	92.9
KOG1003		205	consensus Actin filament-coating protein tropomyos	92.85
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	92.81
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	92.8
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.79
KOG0982		502	consensus Centrosomal protein Nuf [Cell cycle cont	92.63
PRK11281		1113	hypothetical protein; Provisional	92.63
COG4942		420	Membrane-bound metallopeptidase [Cell division and	92.59
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	92.35
PRK04863		1486	mukB cell division protein MukB; Provisional	92.26
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	92.24
PF14662		193	CCDC155: Coiled-coil region of CCDC155	92.15
KOG4807		593	consensus F-actin binding protein, regulates actin	92.03
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	91.6
KOG0933		1174	consensus Structural maintenance of chromosome pro	91.57
PF06818		202	Fez1: Fez1; InterPro: IPR009638 This family repres	91.48
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	91.32
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	91.25
PF14662		193	CCDC155: Coiled-coil region of CCDC155	91.22
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.2
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	90.85
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.5
PF10234		267	Cluap1: Clusterin-associated protein-1; InterPro:	90.22
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	90.09
KOG0963		629	consensus Transcription factor/CCAAT displacement	90.04
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	89.98
PF00038		312	Filament: Intermediate filament protein; InterPro:	89.9
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	89.64
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	89.59
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	89.46
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.32
TIGR01010		362	BexC_CtrB_KpsE polysaccharide export inner-membran	89.27
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.14
PF00038		312	Filament: Intermediate filament protein; InterPro:	89.1
KOG0964		1200	consensus Structural maintenance of chromosome pro	88.87
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	88.48
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	88.44
PF14992		280	TMCO5: TMCO5 family	88.37
PRK03918		880	chromosome segregation protein; Provisional	88.35
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	88.2
PRK10884		206	SH3 domain-containing protein; Provisional	88.15
KOG4673		961	consensus Transcription factor TMF, TATA element m	88.05
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.98
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	87.96
PF10186		302	Atg14: UV radiation resistance protein and autopha	87.52
PRK10246		1047	exonuclease subunit SbcC; Provisional	87.41
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	87.38
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.96
PF15254		861	CCDC14: Coiled-coil domain-containing protein 14	86.94
PF06818		202	Fez1: Fez1; InterPro: IPR009638 This family repres	86.63
KOG0249		916	consensus LAR-interacting protein and related prot	86.22
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	86.17
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.1
KOG0964		1200	consensus Structural maintenance of chromosome pro	85.98
COG3524		372	KpsE Capsule polysaccharide export protein [Cell e	85.66
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	85.57
TIGR02977		219	phageshock_pspA phage shock protein A. Members of	85.47
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	85.12
KOG0933		1174	consensus Structural maintenance of chromosome pro	84.99
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	84.25
PF04094		828	DUF390: Protein of unknown function (DUF390); Inte	84.18
PF05335		188	DUF745: Protein of unknown function (DUF745); Inte	84.17
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	84.1
PF07106		169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.1
KOG0249		916	consensus LAR-interacting protein and related prot	83.92
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	83.91
KOG4673		961	consensus Transcription factor TMF, TATA element m	83.84
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.68
PF15035		182	Rootletin: Ciliary rootlet component, centrosome c	83.65
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	83.27
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	83.2
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	83.03
KOG4572		1424	consensus Predicted DNA-binding transcription fact	82.84
PF12252		1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	82.73
PRK10884		206	SH3 domain-containing protein; Provisional	82.69
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	81.88
PF10212		518	TTKRSYEDQ: Predicted coiled-coil domain-containing	81.77
PF05384		159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	81.67
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.23
PRK09841		726	cryptic autophosphorylating protein tyrosine kinas	80.92
TIGR01000		457	bacteriocin_acc bacteriocin secretion accessory pr	80.89
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.8
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	80.76
PF10186		302	Atg14: UV radiation resistance protein and autopha	80.57
PF13514		1111	AAA_27: AAA domain	80.41
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	80.12

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

Probab=99.96  E-value=3.5e-27  Score=256.16  Aligned_cols=230  Identities=26%  Similarity=0.335  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-H-------------HHHHHHHHHHHHHhhhhhhcch----hhHhHH
Q 006637          371 AKLETANADLARALAAAQKKLEMETNQVAELRQ-Q-------------TELKEVAHEELSQRNSNTHQTG----IYLKRL  432 (637)
Q Consensus       371 a~LE~enaeLAkALA~~QRkLeee~~rvaELrq-k-------------ve~LE~e~esLRqeL~~a~Q~~----~sa~Ql  432 (637)
                      ..++..-+++..+-.++++.++.+...++.|+. .             +..|..+.+.++.+++.+....    ..+.++
T Consensus       228 ~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~  307 (511)
T PF09787_consen  228 AEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDL  307 (511)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455556666666677777777777777777 1             2344444444444444432111    000000


Q ss_pred             H----------------------HhhchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCc--hhH
Q 006637          433 A----------------------ASKGVEFEREILEAEYTFIADKII----QLEDKAKKLEGNIEMTRKEIEDPT--EVE  484 (637)
Q Consensus       433 ~----------------------a~~~~EaElE~~e~Els~Le~el~----~Le~klqk~E~EIe~LR~~ls~pT--~~q  484 (637)
                      .                      .....|.|+..+..|+.++.+++.    .++.++..++.||+.+|.++...+  .+.
T Consensus       308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~  387 (511)
T PF09787_consen  308 EAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSW  387 (511)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            0                      011114555566677777777663    577888999999999999997533  457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC--C---CCCcccCccccCccCCCCchhH
Q 006637          485 IELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKP-VTGS--S---SRDLEFGAWDLSQSNLRPLFEE  558 (637)
Q Consensus       485 ~ELE~RL~qLTE~LIqKQTQLEsLsSEK~AL~lQLERlerl~ee~~s-~s~s--s---~~d~E~gs~~~~~srlrPlF~~  558 (637)
                      .|+|.||++||+.||+||++||.|.+||++|.|||||+.+.+++..+ ..+.  .   ++..++..     .++.+++..
T Consensus       388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~~~~~~~~~~~~~~d~~-----~r~~~~~~~  462 (511)
T PF09787_consen  388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNRPSSILMKYSNSEDDAE-----SRVPLLMKD  462 (511)
T ss_pred             HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCCCchhhHhhccCCCchh-----hhhhhhccC
Confidence            89999999999999999999999999999999999999876663111 1111  1   11111111     121122221


Q ss_pred             h--hhcccchhhhhhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 006637          559 K--IRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLW  605 (637)
Q Consensus       559 ~--va~g~R~v~sal~~LD~~~lrlgrfLrR~P~ARllfiiYlllLHLw  605 (637)
                      .  +.+..|++++|++.||+|+||+|+||||||++|+|||+||++||||
T Consensus       463 ~~~d~~~~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW  511 (511)
T PF09787_consen  463 SPHDIGVARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW  511 (511)
T ss_pred             CCccchHHHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence            1  1134699999999999999999999999999999999999999999

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]	Back alignment and domain information

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PF14992 TMCO5: TMCO5 family	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>PRK10246 exonuclease subunit SbcC; Provisional	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF15254 CCDC14: Coiled-coil domain-containing protein 14	Back alignment and domain information

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein	Back alignment and domain information

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>TIGR02977 phageshock_pspA phage shock protein A	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice	Back alignment and domain information

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences	Back alignment and domain information

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]	Back alignment and domain information

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif	Back alignment and domain information

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional	Back alignment and domain information

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		637
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-12
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-07
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-06
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	2e-05
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	7e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	3e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

 Score = 78.7 bits (194), Expect = 3e-15
 Identities = 41/253 (16%), Positives = 98/253 (38%), Gaps = 3/253 (1%)

Query: 276  ESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQV 335
            E  +E E    R   +K   E+   +    I+E E    +L+ EK+ +++ + +  ++Q+
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD-LEEQL 964

Query: 336  KEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMET 395
            +E    +  +       + + ++  +  +       KL      L   ++     L  E 
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 396  NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADK 455
             +   L +     E    EL  R     ++   L++    + +E E   L  +   +  +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK--IKRKLEGESSDLHEQIAELQAQ 1082

Query: 456  IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATL 515
            I +L+ +  K E  ++     +ED T  +    +++ +L  H+   Q  +E+  + +   
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

Query: 516  AFRIEAVSRLLDE 528
              +   +S  L+ 
Sbjct: 1143 EKQKRDLSEELEA 1155

PyMOL of 1i84

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		637
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.73
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.71
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.53
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.91
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.48
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.38
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.34
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	95.97
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.4
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.0
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	94.16
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	93.61
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	93.6
2b9c_A		147	Striated-muscle alpha tropomyosin; alpha-helix, co	92.99
2v66_B		111	Nuclear distribution protein NUDE-like 1; structur	91.62
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	91.16
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.73
4gkw_A		167	Spindle assembly abnormal protein 6; double helix,	87.85
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	87.56
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	86.61
1f5n_A		592	Interferon-induced guanylate-binding protein 1; GB	85.42
3q8t_A		96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	84.53
3mq9_A		471	Bone marrow stromal antigen 2 fused to maltose-BI	82.51
1x79_B		112	RAB GTPase binding effector protein 1; rabaptin5,	82.0
2v4h_A		110	NF-kappa-B essential modulator; transcription, met	80.51

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

Probab=97.73  E-value=9e-05  Score=87.25  Aligned_cols=7  Identities=14%  Similarity=0.330  Sum_probs=2.8

Q ss_pred             CCCCCCC
Q 006637          157 KPSDGDE  163 (637)
Q Consensus       157 ~~~~~~~  163 (637)
                      ||.+.+.
T Consensus       685 kPN~~k~  691 (1184)
T 1i84_S          685 IPNHEKR  691 (1184)
T ss_dssp             CCCSSCC
T ss_pred             CCCCcCC
Confidence            3444433

PyMOL of 1i84

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1	Back alignment and structure

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}	Back alignment and structure

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*	Back alignment and structure

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}	Back alignment and structure

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}	Back alignment and structure

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2	Back alignment and structure

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		637
d2es4d1		280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.002

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00