Citrus Sinensis ID: 006648

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------
MGNSTGSVEARHRLSSSIEDIYKRRIKKSKVKGIDKPFHIQDRVSCCKFPLLKLVLVIIICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWDDVMKVIEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWIDEEEEEEVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAASEKGAYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELALPLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGHYKIKVEDGRLKICIDNLCKWKSMLRHWGETNWTDDESFAPTPPALTTASLSGL
cccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccccEEEEcccHHHHHHHHccccccccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccEEEEcccccccccccccHHHccccEEEEcccccccEEEEEccccccccccHHHcccccccccccccccccccEEEEEccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccc
cccccccccccccccccHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccEcccccccccccccccccEEEcccccccEccccccHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHcccccEEEEEcccccccccHHHcccHHccHHHcccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHccccEEEEcccHHHHHHHccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEEEcccHHHHHHHHEEEEccEEEEEEEEEccEEEEEcHHHHHHHHHHHHHccHHHcccccccccccccEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHccccccccHHHHHHHHcccccHcccHHHHHHccccccEEEEEEccccccEEEccccccccccHHHHHccHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHccHHHHHHHHcccccccccccccccccEEccccccc
MGNSTGSVEARHRLSSSIEDIYKRRIKkskvkgidkpfhiqdrvscckfplLKLVLVIIICGTFltlmyspevynnnhlshtssrpnfvkrwiwggsdsryvsdldvnWDDVMKVIEKLSEqndyqgigllnfnkSEVNQWKQLIPDATHFVLHLDyaannvtwdslypewideeeeeevpvcpslpkieaprKRINLIAVklpcrnegnwskDVARLHLQLAAADLAasekgaypVHLLLITkcfpipnlfpckelvtregnawlykpnlnvlreklqlpvgscelalplrdkdrvysgsvHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSgleaagwkvrtiqrirnpkaekdaynewnyskfrlwqltdydkiifiDADLLILRnidflfgmpeisatgnngtmfnsgvmviepsscTFQLLMDHINefesynggdqgylnEVFTWWHRIPkhmnflkhfwfgdeeEVKQKKtrlfgadppiLYVLHYLgmkpwlcfrdydcnwnVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDghykikvedgRLKICIDNLCKWKSMLRhwgetnwtddesfaptppalttaslsgl
mgnstgsvearhrlsssiediykrrikkskvkgidkpfhiqdrvscCKFPLLKLVLVIIICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWDDVMKVIEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWIDEEEEEEVPVcpslpkieaprkRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAASEKGAYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPvgscelalplrdkdrvYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHrsgleaagwkvrtiqrirnpkaekdaynewnYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDghykikvedgrLKICIDNLCKWKSMLRHWGETnwtddesfaptppalttaslsgl
MGNSTGSVEARHRLSSSIEDIYKRRIKKSKVKGIDKPFHIQDRVSCCKFPLLKLVLVIIICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWDDVMKVIEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWIDeeeeeeVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVarlhlqlaaadlaasekgaYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELALPLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGHYKIKVEDGRLKICIDNLCKWKSMLRHWGETNWTDDESFAPTPPALTTASLSGL
********************IYKRRIKKSKVKGIDKPFHIQDRVSCCKFPLLKLVLVIIICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWDDVMKVIEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWIDEEEEEEVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAASEKGAYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELALPLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGHYKIKVEDGRLKICIDNLCKWKSMLRHWGETNWT********************
**************************************HIQDRVSCCKFPLLKLVLVIIICGTFLTLMYSPEVYNN***************WIWGGSDSRYVSDLDVNWDDVMK*************IGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWIDEEEEEEVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAASEKGAYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELALPL*D*******SVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPE************************************VEDGRLKICIDNLCKWKSMLRHWGETNWT***********LT****S**
*************LSSSIEDIYKRRIKKSKVKGIDKPFHIQDRVSCCKFPLLKLVLVIIICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWDDVMKVIEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWID*********CPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAASEKGAYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELALPLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGHYKIKVEDGRLKICIDNLCKWKSMLRHWGETNWTDDESFAPTPPA*********
************************RIKKSKVKGIDKPFHIQDRVSCCKFPLLKLVLVIIICGTFLTLMYSPEVYNN**********NFVKRWIWGGSDSRYVSDLDVNWDDVMKVIEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWIDEEEEEEVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAASEKGAYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELALPLRDKD****GSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGHYKIKVEDGRLKICIDNLCKWKSMLRHWGETNWTDDESFAPTPPALTTA*****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGNSTGSVEARHRLSSSIEDIYKRRIKKSKVKGIDKPFHIQDRVSCCKFPLLKLVLVIIICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWDDVMKVIEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWIDEEEEEEVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAASEKGAYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELALPLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGHYKIKVEDGRLKICIDNLCKWKSMLRHWGETNWTDDESFAPTPPALTTASLSGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query637 2.2.26 [Sep-21-2011]
Q9LSB1659 UDP-glucuronate:xylan alp yes no 0.971 0.939 0.686 0.0
Q8W4A7618 Putative UDP-glucuronate: no no 0.915 0.943 0.642 0.0
Q8GWW4596 UDP-glucuronate:xylan alp no no 0.725 0.775 0.493 1e-134
F4HZC3566 Putative UDP-glucuronate: no no 0.720 0.810 0.451 1e-117
Q9FZ37557 Putative UDP-glucuronate: no no 0.706 0.807 0.442 1e-115
Q8GWB7 537 Putative glucuronosyltran no no 0.254 0.301 0.368 2e-26
O15488 501 Glycogenin-2 OS=Homo sapi yes no 0.376 0.479 0.324 1e-21
P46976350 Glycogenin-1 OS=Homo sapi no no 0.381 0.694 0.308 3e-19
P13280333 Glycogenin-1 OS=Oryctolag yes no 0.324 0.621 0.328 3e-18
Q9R062333 Glycogenin-1 OS=Mus muscu yes no 0.273 0.522 0.342 9e-18
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1 Back     alignment and function desciption
 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/648 (68%), Positives = 525/648 (81%), Gaps = 29/648 (4%)

Query: 9   EARHRLSSSIEDIYKRRIKKSKVKG----IDKPFHI-----QDR-VSCC---KFPLLKLV 55
           ++R RLS+SIE I KRR +++   G    + KPF+I     QD+  SCC   KF ++KL+
Sbjct: 17  DSRRRLSASIEAICKRRFRRNSKGGGRSDMVKPFNIINFSTQDKNSSCCCFTKFQIVKLL 76

Query: 56  LVIIICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWDDVMKV 115
           L I++  T  T++YSPE Y+++    +S       RWIW   D RY SDLD+NWDDV K 
Sbjct: 77  LFILLSATLFTIIYSPEAYHHSLSHSSS-------RWIWRRQDPRYFSDLDINWDDVTKT 129

Query: 116 IEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATH------FVLHLDYAANNVTWDSLYP 169
           +E + E    + IG+LNF+ +E+ +W+++     +       VL+LDYA  NVTWD+LYP
Sbjct: 130 LENIEEG---RTIGVLNFDSNEIQRWREVSKSKDNGDEEKVVVLNLDYADKNVTWDALYP 186

Query: 170 EWIDEEEEEEVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAA 229
           EWIDEE+E EVPVCP++P I+ P +R++LI VKLPCR EGNWS+DV RLHLQLAAA +AA
Sbjct: 187 EWIDEEQETEVPVCPNIPNIKVPTRRLDLIVVKLPCRKEGNWSRDVGRLHLQLAAATVAA 246

Query: 230 SEKGAYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELAL 289
           S KG +  H+  +++CFPIPNLF CK+LV+R G+ WLYKPNL+ LR+KLQLPVGSCEL+L
Sbjct: 247 SAKGFFRGHVFFVSRCFPIPNLFRCKDLVSRRGDVWLYKPNLDTLRDKLQLPVGSCELSL 306

Query: 290 PLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYH 349
           PL  +DR   G+  REAYATILHSAHVYVCGAIAAAQSIR SGSTRDLVILVD+ IS YH
Sbjct: 307 PLGIQDRPSLGNPKREAYATILHSAHVYVCGAIAAAQSIRQSGSTRDLVILVDDNISGYH 366

Query: 350 RSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNID 409
           RSGLEAAGW++RTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNID
Sbjct: 367 RSGLEAAGWQIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNID 426

Query: 410 FLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWW 469
           FLF MPEISATGNNGT+FNSGVMVIEP +CTFQLLM+HINE ESYNGGDQGYLNEVFTWW
Sbjct: 427 FLFSMPEISATGNNGTLFNSGVMVIEPCNCTFQLLMEHINEIESYNGGDQGYLNEVFTWW 486

Query: 470 HRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVD 529
           HRIPKHMNFLKHFW GDE++ K+KKT LFGA+PP+LYVLHYLGMKPWLC+RDYDCN+N D
Sbjct: 487 HRIPKHMNFLKHFWIGDEDDAKRKKTELFGAEPPVLYVLHYLGMKPWLCYRDYDCNFNSD 546

Query: 530 IFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGHYKIKV 589
           IF EFA+D+AH KWW VHDAMP++L QFC LRSKQKAQLE+DRRQAE ANY DGH+KI+V
Sbjct: 547 IFVEFATDIAHRKWWMVHDAMPQELHQFCYLRSKQKAQLEYDRRQAEAANYADGHWKIRV 606

Query: 590 EDGRLKICIDNLCKWKSMLRHWGETNWTDDESFAPTPPALTTASLSGL 637
           +D R KICID LC WKSMLRHWGE+NWTD ESF PTPPA+T    S L
Sbjct: 607 KDPRFKICIDKLCNWKSMLRHWGESNWTDYESFVPTPPAITVDRRSSL 654
Glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls. In association with GUX2, is responsible for almost all of the substitutions of the xylan backbone in stem glucuronoxylan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q8W4A7|GUX3_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWW4|GUX2_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1 Back     alignment and function description
>sp|F4HZC3|GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZ37|GUX4_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1 Back     alignment and function description
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1 Back     alignment and function description
>sp|O15488|GLYG2_HUMAN Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2 Back     alignment and function description
>sp|P46976|GLYG_HUMAN Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4 Back     alignment and function description
>sp|P13280|GLYG_RABIT Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1 SV=3 Back     alignment and function description
>sp|Q9R062|GLYG_MOUSE Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query637
60657592636 secondary cell wall-related glycosyltran 0.995 0.996 0.820 0.0
224095970630 predicted protein [Populus trichocarpa] 0.985 0.996 0.815 0.0
225431525636 PREDICTED: uncharacterized protein LOC10 0.995 0.996 0.815 0.0
255552386630 glycogenin, putative [Ricinus communis] 0.959 0.969 0.809 0.0
357464603637 Secondary cell wall-related glycosyltran 0.990 0.990 0.769 0.0
356512827640 PREDICTED: uncharacterized protein LOC10 1.0 0.995 0.756 0.0
449507512681 PREDICTED: LOW QUALITY PROTEIN: UDP-gluc 0.992 0.928 0.784 0.0
449461835630 PREDICTED: UDP-glucuronate:xylan alpha-g 0.982 0.993 0.778 0.0
224083428544 predicted protein [Populus trichocarpa] 0.841 0.985 0.843 0.0
60657590649 secondary cell wall-related glycosyltran 0.995 0.976 0.732 0.0
>gi|60657592|gb|AAX33317.1| secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
 Score = 1096 bits (2835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/639 (82%), Positives = 574/639 (89%), Gaps = 5/639 (0%)

Query: 1   MGNSTGSVEARHRLSSSIEDIYKRRIKKSKVKGIDKPFHI--QDRVSCCKFPLLKLVLVI 58
           MG   GSVEARHRLS+S ED+YKRR+ +SKVKG++KPF+I  QDR SCCKFPL+K +LV+
Sbjct: 1   MGGPPGSVEARHRLSASFEDLYKRRLTRSKVKGVEKPFNIPIQDRSSCCKFPLIKFILVV 60

Query: 59  IICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWDDVMKVIEK 118
           II GT ++L+YSP+V   + LSH+ SR NFV RWIWGGSD RYVSDLDV WDDVMKVIEK
Sbjct: 61  IIAGTIVSLLYSPDV---DQLSHSGSRQNFVNRWIWGGSDPRYVSDLDVKWDDVMKVIEK 117

Query: 119 LSEQNDYQGIGLLNFNKSEVNQWKQLIPDATHFVLHLDYAANNVTWDSLYPEWIDEEEEE 178
           L EQNDYQGIGLLNFN SEV  W QL PDATH  + LDYA  N+TWDSLYPEWIDEE+E+
Sbjct: 118 LGEQNDYQGIGLLNFNDSEVYNWNQLTPDATHVNIQLDYADKNMTWDSLYPEWIDEEQEK 177

Query: 179 EVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVARLHLQLAAADLAASEKGAYPVH 238
           EVPVCPSLPK + PRKR++LIAVKLPCRNE NWS+DVARLHLQLAAA LAAS KG YPVH
Sbjct: 178 EVPVCPSLPKPDTPRKRLDLIAVKLPCRNEWNWSRDVARLHLQLAAASLAASAKGFYPVH 237

Query: 239 LLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGSCELALPLRDKDRVY 298
           +L IT+ FPIPNLF CKELV REGN WLYKP++NVLR+KL LPVGSCELALPLRD+ R Y
Sbjct: 238 MLFITRRFPIPNLFSCKELVVREGNVWLYKPDVNVLRQKLHLPVGSCELALPLRDRARAY 297

Query: 299 SGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGW 358
           SG+  REAYATILHSAHVYVCGAIAAAQSIR+SGS RDLVILVDETIS YHRSGLEAAGW
Sbjct: 298 SGNPQREAYATILHSAHVYVCGAIAAAQSIRLSGSNRDLVILVDETISVYHRSGLEAAGW 357

Query: 359 KVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEIS 418
           K+RTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEIS
Sbjct: 358 KIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEIS 417

Query: 419 ATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIPKHMNF 478
           ATGNN ++FNSGVMVIEPS+CTF LLM+HINE ESYNGGDQGYLNEVFTWWHRIPKHMNF
Sbjct: 418 ATGNNASLFNSGVMVIEPSNCTFNLLMEHINEIESYNGGDQGYLNEVFTWWHRIPKHMNF 477

Query: 479 LKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDCNWNVDIFQEFASDV 538
           LKHFW GDEEEVKQKKTRLF A+PPILYVLHYLG+KPWLCFRDYDCNWN DIFQEFASDV
Sbjct: 478 LKHFWIGDEEEVKQKKTRLFAAEPPILYVLHYLGVKPWLCFRDYDCNWNADIFQEFASDV 537

Query: 539 AHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGHYKIKVEDGRLKICI 598
           AH KWWRVHDAMPEQL QFC L+SKQKAQLEFDRR+AE ANYTDGH+KIKV+D RLK C+
Sbjct: 538 AHEKWWRVHDAMPEQLHQFCSLKSKQKAQLEFDRREAEKANYTDGHWKIKVQDRRLKKCV 597

Query: 599 DNLCKWKSMLRHWGETNWTDDESFAPTPPALTTASLSGL 637
           DN+C WKSML+HWGETNWT+DE F P+PPA++TASL GL
Sbjct: 598 DNVCNWKSMLKHWGETNWTNDEFFNPSPPAISTASLPGL 636

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224095970|ref|XP_002310513.1| predicted protein [Populus trichocarpa] gi|222853416|gb|EEE90963.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225431525|ref|XP_002275240.1| PREDICTED: uncharacterized protein LOC100248912 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552386|ref|XP_002517237.1| glycogenin, putative [Ricinus communis] gi|223543608|gb|EEF45137.1| glycogenin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357464603|ref|XP_003602583.1| Secondary cell wall-related glycosyltransferase family [Medicago truncatula] gi|355491631|gb|AES72834.1| Secondary cell wall-related glycosyltransferase family [Medicago truncatula] Back     alignment and taxonomy information
>gi|356512827|ref|XP_003525117.1| PREDICTED: uncharacterized protein LOC100783884 [Glycine max] Back     alignment and taxonomy information
>gi|449507512|ref|XP_004163053.1| PREDICTED: LOW QUALITY PROTEIN: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449461835|ref|XP_004148647.1| PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224083428|ref|XP_002307022.1| predicted protein [Populus trichocarpa] gi|222856471|gb|EEE94018.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|60657590|gb|AAX33316.1| secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query637
TAIR|locus:2094014659 PGSIP1 "plant glycogenin-like 0.978 0.945 0.663 7.2e-242
TAIR|locus:2196020618 PGSIP2 "plant glycogenin-like 0.901 0.928 0.638 5.2e-207
TAIR|locus:2036024566 PGSIP5 "plant glycogenin-like 0.551 0.620 0.481 4.1e-97
TAIR|locus:2011045557 PGSIP4 "AT1G54940" [Arabidopsi 0.546 0.624 0.482 1e-93
TAIR|locus:2146173 537 PGSIP6 "plant glycogenin-like 0.249 0.296 0.376 9.1e-25
UNIPROTKB|E1BYL9332 E1BYL9 "Uncharacterized protei 0.376 0.722 0.323 1.8e-23
WB|WBGene00012020300 gyg-2 [Caenorhabditis elegans 0.324 0.69 0.328 9.8e-22
WB|WBGene00006863429 gyg-1 [Caenorhabditis elegans 0.324 0.482 0.333 4.8e-21
UNIPROTKB|F6QLM5331 GYG1 "Uncharacterized protein" 0.387 0.746 0.312 5.6e-21
UNIPROTKB|P46976350 GYG1 "Glycogenin-1" [Homo sapi 0.390 0.711 0.311 8.7e-21
TAIR|locus:2094014 PGSIP1 "plant glycogenin-like starch initiation protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2331 (825.6 bits), Expect = 7.2e-242, P = 7.2e-242
 Identities = 433/653 (66%), Positives = 511/653 (78%)

Query:     4 STGSVEARHRLSSSIEDIYKRRIKKSKVKG----IDKPFHI-----QDR-VSCC---KFP 50
             +TG  ++R RLS+SIE I KRR +++   G    + KPF+I     QD+  SCC   KF 
Sbjct:    13 TTGG-DSRRRLSASIEAICKRRFRRNSKGGGRSDMVKPFNIINFSTQDKNSSCCCFTKFQ 71

Query:    51 LLKLVLVIIICGTFLTLMYSPEVYNNNHLSHTSSRPNFVKRWIWGGSDSRYVSDLDVNWD 110
             ++KL+L I++  T  T++YSPE Y+++ LSH+SSR      WIW   D RY SDLD+NWD
Sbjct:    72 IVKLLLFILLSATLFTIIYSPEAYHHS-LSHSSSR------WIWRRQDPRYFSDLDINWD 124

Query:   111 DVMKVIEKLSEQNDYQGIGLLNFNKSEVNQWKQLIPDATH------FVLHLDYAANNVTW 164
             DV K +E + E      IG+LNF+ +E+ +W+++     +       VL+LDYA  NVTW
Sbjct:   125 DVTKTLENIEEGRT---IGVLNFDSNEIQRWREVSKSKDNGDEEKVVVLNLDYADKNVTW 181

Query:   165 DSLYPEWIDXXXXXXVPVCPSLPKIEAPRKRINLIAVKLPCRNEGNWSKDVXXXXXXXXX 224
             D+LYPEWID      VPVCP++P I+ P +R++LI VKLPCR EGNWS+DV         
Sbjct:   182 DALYPEWIDEEQETEVPVCPNIPNIKVPTRRLDLIVVKLPCRKEGNWSRDVGRLHLQLAA 241

Query:   225 XXXXXXXXXXYPVHLLLITKCFPIPNLFPCKELVTREGNAWLYKPNLNVLREKLQLPVGS 284
                       +  H+  +++CFPIPNLF CK+LV+R G+ WLYKPNL+ LR+KLQLPVGS
Sbjct:   242 ATVAASAKGFFRGHVFFVSRCFPIPNLFRCKDLVSRRGDVWLYKPNLDTLRDKLQLPVGS 301

Query:   285 CELALPLRDKDRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDET 344
             CEL+LPL  +DR   G+  REAYATILHSAHVYVCGAIAAAQSIR SGSTRDLVILVD+ 
Sbjct:   302 CELSLPLGIQDRPSLGNPKREAYATILHSAHVYVCGAIAAAQSIRQSGSTRDLVILVDDN 361

Query:   345 ISAYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLI 404
             IS YHRSGLEAAGW++RTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLI
Sbjct:   362 ISGYHRSGLEAAGWQIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLI 421

Query:   405 LRNIDFLFGMPEISATGNNGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNE 464
             LRNIDFLF MPEISATGNNGT+FNSGVMVIEP +CTFQLLM+HINE ESYNGGDQGYLNE
Sbjct:   422 LRNIDFLFSMPEISATGNNGTLFNSGVMVIEPCNCTFQLLMEHINEIESYNGGDQGYLNE 481

Query:   465 VFTWWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGMKPWLCFRDYDC 524
             VFTWWHRIPKHMNFLKHFW GDE++ K+KKT LFGA+PP+LYVLHYLGMKPWLC+RDYDC
Sbjct:   482 VFTWWHRIPKHMNFLKHFWIGDEDDAKRKKTELFGAEPPVLYVLHYLGMKPWLCYRDYDC 541

Query:   525 NWNVDIFQEFASDVAHAKWWRVHDAMPEQLQQFCLLRSKQKAQLEFDRRQAEMANYTDGH 584
             N+N DIF EFA+D+AH KWW VHDAMP++L QFC LRSKQKAQLE+DRRQAE ANY DGH
Sbjct:   542 NFNSDIFVEFATDIAHRKWWMVHDAMPQELHQFCYLRSKQKAQLEYDRRQAEAANYADGH 601

Query:   585 YKIKVEDGRLKICIDNLCKWKSMLRHWGETNWTDDESFAPTPPALTTASLSGL 637
             +KI+V+D R KICID LC WKSMLRHWGE+NWTD ESF PTPPA+T    S L
Sbjct:   602 WKIRVKDPRFKICIDKLCNWKSMLRHWGESNWTDYESFVPTPPAITVDRRSSL 654
GO:0005634 "nucleus" evidence=ISM
GO:0005982 "starch metabolic process" evidence=IMP
GO:0009058 "biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0010417 "glucuronoxylan biosynthetic process" evidence=IMP
GO:0080116 "glucuronoxylan glucuronosyltransferase activity" evidence=IMP
GO:0009834 "secondary cell wall biogenesis" evidence=IGI
GO:0015020 "glucuronosyltransferase activity" evidence=IDA
GO:0045492 "xylan biosynthetic process" evidence=IGI;RCA;IDA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
TAIR|locus:2196020 PGSIP2 "plant glycogenin-like starch initiation protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036024 PGSIP5 "plant glycogenin-like starch initiation protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011045 PGSIP4 "AT1G54940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146173 PGSIP6 "plant glycogenin-like starch initiation protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYL9 E1BYL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00012020 gyg-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00006863 gyg-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F6QLM5 GYG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P46976 GYG1 "Glycogenin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSB1GUX1_ARATH2, ., 4, ., 1, ., -0.68670.97170.9393yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00070393
hypothetical protein (631 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query637
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 1e-75
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 2e-41
PLN00176333 PLN00176, PLN00176, galactinol synthase 2e-15
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 3e-15
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 2e-10
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 2e-09
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 3e-07
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 7e-07
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information 
 Score =  241 bits (616), Expect = 1e-75
 Identities = 95/256 (37%), Positives = 138/256 (53%), Gaps = 26/256 (10%)

Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
           EAY T+L +   Y+ GA+    S+R  GS+ DLV+LV   +S   R  LE  GW VR ++
Sbjct: 1   EAYVTLLTNDD-YLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVE 59

Query: 365 RIRNPKAE---KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMP-EISAT 420
            I  P +    K    +  Y+K RLW LT+YDK++F+DAD L+LRNID LF +P E +A 
Sbjct: 60  PIDPPDSANLLKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAA 119

Query: 421 GNNGT--MFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTW---WHRIPKH 475
            + G   +FNSGV V++PS  TF  L+D + +  S++GGDQG LN  F+    W R+P  
Sbjct: 120 PDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGGDQGLLNSYFSDRGIWKRLPFT 179

Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPWLCFRDYDCNWNVDIFQEF 534
            N LK   +   E +              + V+H++G  KPW  +RD +     D     
Sbjct: 180 YNALKPLRYLHPEAL---------WFGDEIKVVHFIGGDKPWSWWRDPETKEKDDY---- 226

Query: 535 ASDVAHAKWWRVHDAM 550
             +  H  WW ++D +
Sbjct: 227 --NELHQWWWDIYDEL 240

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 637
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.97
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.97
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.97
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.96
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.94
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.94
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.94
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 99.94
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.88
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.87
PLN02523559 galacturonosyltransferase 99.85
PLN02718603 Probable galacturonosyltransferase 99.83
PLN02769629 Probable galacturonosyltransferase 99.81
PLN02867535 Probable galacturonosyltransferase 99.79
PLN02659534 Probable galacturonosyltransferase 99.78
PLN02870533 Probable galacturonosyltransferase 99.77
PLN02742534 Probable galacturonosyltransferase 99.76
PLN02829639 Probable galacturonosyltransferase 99.74
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.7
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.66
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.09
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.68
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 94.5
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 94.33
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 93.03
PLN03181453 glycosyltransferase; Provisional 89.55
>PLN00176 galactinol synthase Back     alignment and domain information 
Probab=100.00  E-value=3e-45  Score=386.57  Aligned_cols=235  Identities=29%  Similarity=0.508  Sum_probs=195.2

Q ss_pred             CCCCEEEEEEeecCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEeeccCCccccc---ccc
Q 006648          301 SVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAEKD---AYN  377 (637)
Q Consensus       301 ~~~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns~~dlVILvtd~ISee~r~~Lk~~g~~V~~I~~I~~P~~~~~---~~~  377 (637)
                      ..+++||||+|+++++|++||++|++||+++++.+++|||+++++++++++.|++.|+.|+.|+++..+.....   .+.
T Consensus        19 ~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~~   98 (333)
T PLN00176         19 KPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAYY   98 (333)
T ss_pred             ccCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccchh
Confidence            46789999999988999999999999999999999999999999999999999999999999988865543211   223


Q ss_pred             chhHHHHHHcccCCCceEEEecccccccCCchhhhCCCC--eeeecC---------------------------------
Q 006648          378 EWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPE--ISATGN---------------------------------  422 (637)
Q Consensus       378 ~~tysKL~Iw~LtdYDRVLYLDAD~LVL~nLDeLFdlp~--IaAv~D---------------------------------  422 (637)
                      ..+|+||++|++++||||||||||+||++|||+||+++.  ++|+.+                                 
T Consensus        99 ~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~  178 (333)
T PLN00176         99 VINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGP  178 (333)
T ss_pred             hhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhccC
Confidence            458999999999999999999999999999999999974  666543                                 


Q ss_pred             -CCCcccceEEEEecCHHHHHHHHHHHHhcCCCCCCChhHHHHhcc-cceecCCccCccccccCCChHHHHhhhhcccCC
Q 006648          423 -NGTMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFT-WWHRIPKHMNFLKHFWFGDEEEVKQKKTRLFGA  500 (637)
Q Consensus       423 -~~~yFNSGVMVInPs~~~fe~L~e~l~~~~sy~~~DQdiLN~vF~-~w~~LP~rYN~l~~~w~~~~~~~~~~k~e~f~~  500 (637)
                       ...|||||||||+|+.+++++|++.+.....+.|+|||+||.+|. +|++||.+||++........        +.++ 
T Consensus       179 ~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~~~~~~~~--------~~~~-  249 (333)
T PLN00176        179 PPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDFLNMFFRDIYKPIPPVYNLVLAMLWRHP--------ENVE-  249 (333)
T ss_pred             CCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcEEECCchhcCchhhhhhCh--------hhcc-
Confidence             124999999999999999999999987665678999999999999 89999999999875422111        1232 


Q ss_pred             CCCCeEEEEecC--CCCCCCCCCCCCCccccccccccchhHHhhHHHHHhhcH
Q 006648          501 DPPILYVLHYLG--MKPWLCFRDYDCNWNVDIFQEFASDVAHAKWWRVHDAMP  551 (637)
Q Consensus       501 ~~~~~kIIHF~G--~KPW~~~~~ydcnWn~~~~~~~~sd~~h~~WW~vyd~mp  551 (637)
                       .++++||||+|  .|||+.. ...+|++.++.     ..++++||++|++.-
T Consensus       250 -~~~vkIIHY~~~~~KPW~~~-~~~~~~~~~~~-----~~~~~~Ww~~~~~~~  295 (333)
T PLN00176        250 -LDKVKVVHYCAAGSKPWRYT-GKEENMDREDI-----KMLVKKWWDIYNDES  295 (333)
T ss_pred             -cCCcEEEEeeCCCCCCCCCC-CcccCCChHHH-----HHHHHHHHHHhcccc
Confidence             35799999996  7999954 45667665433     357899999999854

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query637
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 7e-21
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 2e-20
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 2e-20
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 4e-20
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 7e-20
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 2e-19
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 2e-19
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 2e-19
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 2e-19
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 2e-19
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 2e-19
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 3e-19
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 4e-19
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 1e-18
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure 
Iteration: 1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 15/232 (6%)
Query: 295 DRVYSGSVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLE 354
           + +Y  S+  +A+ T L +   Y  GA+    S++   +TR LV+L    +S   R  LE
Sbjct: 16  ENLYFQSMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLE 74
Query: 355 AAGWKVRTIQRIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNID 409
               +V  +  + +  +      K        +K   W LT Y K +F+DAD L+L NID
Sbjct: 75  TVFDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANID 134
Query: 410 FLFGMPEISATGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFT 467
            LF   E+SA  + G    FNSGV V +PS  T+  L+   +E  S++GGDQG LN  F+
Sbjct: 135 DLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFS 194
Query: 468 WWHR--IPKHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPW 516
            W    I KH+ F+ +              ++FGA      V+H+LG +KPW
Sbjct: 195 SWATTDIRKHLPFIYNLS-SISIYSYLPAFKVFGASAK---VVHFLGRVKPW 242
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query637
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 7e-56
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 1e-54
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 3e-13
3tzt_A276 Glycosyl transferase family 8; structural genomics 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
 Score =  189 bits (481), Expect = 7e-56
 Identities = 81/270 (30%), Positives = 120/270 (44%), Gaps = 21/270 (7%)

Query: 301 SVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKV 360
           S+  +A+ T L +   Y  GA+    S++   +TR LV+L    +S   R  LE    +V
Sbjct: 1   SMTDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEV 59

Query: 361 RTIQRIRNPKAE-----KDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMP 415
             +  + +  +      K        +K   W LT Y K +F+DAD L+L NID LF   
Sbjct: 60  IMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE 119

Query: 416 EISATGNNG--TMFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHRIP 473
           E+SA  + G    FNSGV V +PS  T+  L+   +E  S++GGDQG LN  F+ W    
Sbjct: 120 ELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTD 179

Query: 474 --KHMNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLGM-KPWLCFRDYDCNWNVDI 530
             KH+ F+ +              ++FGA      V+H+LG  KPW     YD       
Sbjct: 180 IRKHLPFIYNLSSISIYS-YLPAFKVFGASA---KVVHFLGRVKPW--NYTYDPKTKSVK 233

Query: 531 FQEFASDVAHA----KWWRVHDAMPEQLQQ 556
            +    ++ H      WW +       L Q
Sbjct: 234 SEAHDPNMTHPEFLILWWNIFTTNVLPLLQ 263
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query637
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 99.97
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.96
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=2.9e-42  Score=352.79  Aligned_cols=234  Identities=30%  Similarity=0.452  Sum_probs=189.3

Q ss_pred             CCCEEEEEEeecCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEeeccCCccc-----cccc
Q 006648          302 VHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAE-----KDAY  376 (637)
Q Consensus       302 ~~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns~~dlVILvtd~ISee~r~~Lk~~g~~V~~I~~I~~P~~~-----~~~~  376 (637)
                      ..++||||+++ |++|++||+|+++||+++|+++++++|++++++++.++.|++.|.+++.|+.+..+...     ....
T Consensus         2 ~~~~AyvTl~t-d~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~   80 (263)
T 3u2u_A            2 MTDQAFVTLTT-NDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPE   80 (263)
T ss_dssp             TTTEEEEEEES-SHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTT
T ss_pred             CcceEEEEEEE-CHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcc
Confidence            45899999775 68999999999999999999999999999999999999999999999999887654321     1111


Q ss_pred             cchhHHHHHHcccCCCceEEEecccccccCCchhhhCCCCeeeecCC--CCcccceEEEEecCHHHHHHHHHHHHhcCCC
Q 006648          377 NEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGNN--GTMFNSGVMVIEPSSCTFQLLMDHINEFESY  454 (637)
Q Consensus       377 ~~~tysKL~Iw~LtdYDRVLYLDAD~LVL~nLDeLFdlp~IaAv~D~--~~yFNSGVMVInPs~~~fe~L~e~l~~~~sy  454 (637)
                      ...+|+||++|++++||||||||+|++|++|||+||+++.++|+++.  +.|||||||||+|+..+++++++.+.+..++
T Consensus        81 ~~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~  160 (263)
T 3u2u_A           81 LGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSF  160 (263)
T ss_dssp             GGGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCT
T ss_pred             hhHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCC
Confidence            23589999999999999999999999999999999999999999874  5899999999999999999999999877788


Q ss_pred             CCCChhHHHHhccc------ceecCCccCccccc-cCCChHHHHhhhhcccCCCCCCeEEEEecC-CCCCCCCCCCCCCc
Q 006648          455 NGGDQGYLNEVFTW------WHRIPKHMNFLKHF-WFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPWLCFRDYDCNW  526 (637)
Q Consensus       455 ~~~DQdiLN~vF~~------w~~LP~rYN~l~~~-w~~~~~~~~~~k~e~f~~~~~~~kIIHF~G-~KPW~~~~~ydcnW  526 (637)
                      .++|||+||.+|..      ++.||.+||++... +.. .   +.+.  .+   .++++||||+| .|||+...    +.
T Consensus       161 ~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~-~---~~~~--~~---~~~~~IIHf~g~~KPW~~~~----~~  227 (263)
T 3u2u_A          161 DGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSY-L---PAFK--VF---GASAKVVHFLGRVKPWNYTY----DP  227 (263)
T ss_dssp             TSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSS-H---HHHH--HH---GGGCSEEECCSSSCGGGSEE----ET
T ss_pred             CcccHHHHHHHhccccccCeeEeCCcccccccchhccc-c---HHHH--hh---cCCeEEEEECCCCcCCCCCC----CC
Confidence            99999999999984      47999999998742 221 1   1111  11   24689999999 99999642    22


Q ss_pred             cccc----ccccc--chhHHhhHHHHHhh
Q 006648          527 NVDI----FQEFA--SDVAHAKWWRVHDA  549 (637)
Q Consensus       527 n~~~----~~~~~--sd~~h~~WW~vyd~  549 (637)
                      ..+.    .....  .+++-+.||++|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~ww~~~~~  256 (263)
T 3u2u_A          228 KTKSVKSEAHDPNMTHPEFLILWWNIFTT  256 (263)
T ss_dssp             TTTEEECCSSCGGGSSTHHHHHHHHHHHH
T ss_pred             CCCcccccCCCcchhHHHHHHHHHHHHHh
Confidence            1111    00111  15678999999986
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 637
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 9e-46
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 9e-18
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  161 bits (407), Expect = 9e-46
 Identities = 73/258 (28%), Positives = 109/258 (42%), Gaps = 17/258 (6%)

Query: 305 EAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQ 364
           +A+ T+  +   Y  GA+    S++   ++R L +L    +S   R  LE    +V T+ 
Sbjct: 4   QAFVTLTTNDA-YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVD 62

Query: 365 RIRNPKAEKDAYNEWN-----YSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISA 419
            + +  +      +        +K   W LT Y K +F+DAD L+L NID LF   E+SA
Sbjct: 63  ILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSA 122

Query: 420 TGNNGT--MFNSGVMVIEPSSCTFQLLMDHINEFESYNGGDQGYLNEVFTWWHR--IPKH 475
             + G    FNSGV V +PS  T+  L+   +E  S++GGDQG LN  F  W    I KH
Sbjct: 123 APDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKH 182

Query: 476 MNFLKHFWFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPWLCFRDYDCNWNVDIFQEF 534
           + F+ +                F A      V+H+LG  KPW    D           + 
Sbjct: 183 LPFIYNLSSISIYSYLPA----FKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDP 238

Query: 535 ASDVA--HAKWWRVHDAM 550
                     WW +    
Sbjct: 239 TMTHPQFLNVWWDIFTTS 256
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query637
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.97
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 93.04
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 87.0
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=7.6e-40  Score=326.35  Aligned_cols=239  Identities=29%  Similarity=0.421  Sum_probs=188.4

Q ss_pred             CCEEEEEEeecCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEeeccCCccc-----ccccc
Q 006648          303 HREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISAYHRSGLEAAGWKVRTIQRIRNPKAE-----KDAYN  377 (637)
Q Consensus       303 ~R~AYVTlLtsdd~YL~gAiVL~~SLr~~ns~~dlVILvtd~ISee~r~~Lk~~g~~V~~I~~I~~P~~~-----~~~~~  377 (637)
                      ...||||+++ |++|++||+|+++||+++++.+++|||++++++++.++.|++.+.+++.++.+..+...     ...+.
T Consensus         2 ~~~A~vt~~t-~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           2 TDQAFVTLTT-NDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CSEEEEEEES-SHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CccEEEEEEe-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            3579999775 68999999999999999999999999999999999999999999999998877655432     12344


Q ss_pred             chhHHHHHHcccCCCceEEEecccccccCCchhhhCCCCeeeecC--CCCcccceEEEEecCHHHHHHHHHHHHhcCCCC
Q 006648          378 EWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEISATGN--NGTMFNSGVMVIEPSSCTFQLLMDHINEFESYN  455 (637)
Q Consensus       378 ~~tysKL~Iw~LtdYDRVLYLDAD~LVL~nLDeLFdlp~IaAv~D--~~~yFNSGVMVInPs~~~fe~L~e~l~~~~sy~  455 (637)
                      ..+|+||++|++++||||||||||+||++|||+||+.+.++|+++  ...+||||||+++|+..+++.+.+.+.+...+.
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~  160 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD  160 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHhhCCCC
Confidence            568999999999999999999999999999999999999888876  468999999999999999999999988888888


Q ss_pred             CCChhHHHHhcc------cceecCCccCccccc-cCCChHHHHhhhhcccCCCCCCeEEEEecC-CCCCCCCCCCC--CC
Q 006648          456 GGDQGYLNEVFT------WWHRIPKHMNFLKHF-WFGDEEEVKQKKTRLFGADPPILYVLHYLG-MKPWLCFRDYD--CN  525 (637)
Q Consensus       456 ~~DQdiLN~vF~------~w~~LP~rYN~l~~~-w~~~~~~~~~~k~e~f~~~~~~~kIIHF~G-~KPW~~~~~yd--cn  525 (637)
                      ++||++||..|.      .|..||..||+.... +....    .     +.....+++||||+| .|||+......  ..
T Consensus       161 ~~dq~~ln~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~-----~~~~~~~~~iIHf~g~~KPW~~~~~~~~~~~  231 (263)
T d1ll2a_         161 GGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLP----A-----FKAFGANAKVVHFLGQTKPWNYTYDTKTKSV  231 (263)
T ss_dssp             SSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHH----H-----HHHHGGGCSEEECCSSCCGGGSCEETTTTEE
T ss_pred             hhhhhHHHHHHHhhhccCcccccCHHHhhhhhhhhhhhH----h-----HHhhcCCeEEEEeCCCCCCCCCCCCCCcccc
Confidence            999999999986      466788888876532 11100    0     111124678999999 99998653211  11


Q ss_pred             ccccccccccchhHHhhHHHHHhhcH
Q 006648          526 WNVDIFQEFASDVAHAKWWRVHDAMP  551 (637)
Q Consensus       526 Wn~~~~~~~~sd~~h~~WW~vyd~mp  551 (637)
                      +............+++.||++|++.-
T Consensus       232 ~~~~~~~~~~~~~l~~~Ww~~~~~~~  257 (263)
T d1ll2a_         232 RSEGHDPTMTHPQFLNVWWDIFTTSV  257 (263)
T ss_dssp             C--------CCHHHHHHHHHHHHHTH
T ss_pred             ccchhhccccHHHHHHHHHHHHhccc
Confidence            11111111123578999999999864
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure