Citrus Sinensis ID: 006657
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 636 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRT1 | 1016 | Probably inactive leucine | no | no | 0.801 | 0.501 | 0.310 | 5e-48 | |
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.781 | 0.586 | 0.327 | 2e-47 | |
| Q9ZVR7 | 1008 | Phytosulfokine receptor 1 | no | no | 0.786 | 0.496 | 0.293 | 2e-45 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.737 | 0.399 | 0.320 | 9e-45 | |
| Q9FRS6 | 1029 | Leucine-rich repeat recep | no | no | 0.893 | 0.551 | 0.291 | 1e-43 | |
| O82318 | 960 | Probably inactive leucine | no | no | 0.863 | 0.571 | 0.295 | 1e-43 | |
| O22476 | 1196 | Protein BRASSINOSTEROID I | no | no | 0.742 | 0.394 | 0.326 | 2e-43 | |
| C0LGP4 | 1010 | Probable LRR receptor-lik | no | no | 0.779 | 0.491 | 0.291 | 1e-42 | |
| C0LGE4 | 882 | Probable LRR receptor-lik | no | no | 0.798 | 0.575 | 0.284 | 5e-42 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.781 | 0.509 | 0.298 | 5e-42 |
| >sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 187/602 (31%), Positives = 277/602 (46%), Gaps = 92/602 (15%)
Query: 38 ALLRFKQDLKDPANRLASWS--DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLE 95
L+ FK DL DP + L SW+ D C+W+ V CN T RV+EL L
Sbjct: 39 GLIVFKSDLNDPFSHLESWTEDDNTPCSWSYVKCNPKTSRVIELSL-------------- 84
Query: 96 DYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTG 155
+ L GKIN + L+ L L LSNNNF N L L+ +DLS L+G
Sbjct: 85 ----DGLALTGKINRGIQKLQRLKVLSLSNNNFTGNINA--LSNNNHLQKLDLSHNNLSG 138
Query: 156 MIPHQLGNLFNLQYLDLSIDT----------HNPISFSFLYLEN-------FSWLSGLSL 198
IP LG++ +LQ+LDL+ ++ +N S +L L + S L S+
Sbjct: 139 QIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSV 198
Query: 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 258
L L+L+ S + L L+ L LS+ SL S+P L I + +L L L N
Sbjct: 199 LNSLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIP-LGILSLHNLKELQLQRN 257
Query: 259 EFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLH 318
+F L PS + HL +DL N F G +P LQ L SL H D+ +N P W+
Sbjct: 258 QFSGAL-PSDIGLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIG 316
Query: 319 KFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWIGEKLLRNLILRLR 372
T L +L N L G + S L ++ EN SG +P + E +I++L+
Sbjct: 317 DMTGLVHLDFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESL-ESCKELMIVQLK 375
Query: 373 SNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTI 432
N F G IP L L +D S N +G++PR + L E+ + D +++ T
Sbjct: 376 GNDFSGNIPDGFFDL-GLQEMDFSGNGLTGSIPRGSSRLF-----ESLIRLDLSHNSLTG 429
Query: 433 ----ELSILVVMKGRELAYN----------------TMLKL------------------V 454
E+ + + M+ L++N T+L L +
Sbjct: 430 SIPGEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQNLTVLDLRNSALIGSVPADICESQSL 489
Query: 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSG 514
+ + L GN+L+G IPE + N +L+ L+LSHN L G IP+++ ++ L+ + N LSG
Sbjct: 490 QILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTGPIPKSLSNLQELKILKLEANKLSG 549
Query: 515 RIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNVP 574
IP+ + L L +N+S N L G++PLG Q + S GN +PL + NVP
Sbjct: 550 EIPKELGDLQNLLLVNVSFNRLIGRLPLGDVFQSLDQSAIQGNLGICSPLLRGPCTLNVP 609
Query: 575 IP 576
P
Sbjct: 610 KP 611
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 181/552 (32%), Positives = 261/552 (47%), Gaps = 55/552 (9%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGS---LRHIDLSR 150
LE +D + G SLL + L + L N F P+ S L+ + L R
Sbjct: 304 LEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTG---PIEFANTSSSTKLQDLILGR 360
Query: 151 AELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLS 210
L G IP + L NL+ LD+S HN + + +S L L HLDL+ +L
Sbjct: 361 NRLHGPIPESISRLLNLEELDIS---HNNFTGAIP-----PTISKLVNLLHLDLSKNNLE 412
Query: 211 ---TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPS 267
A W L T +L S +L E LDL+ N F +P
Sbjct: 413 GEVPACLWRLNTMVLSHNSFSSFENTSQEEALIE----------ELDLNSNSFQGP-IPY 461
Query: 268 WLFGLSHLVFLDLGFNSFGGPIPDGLQNLT-SLEHLDLRSNNFISSIPTWLHKFTRLEYL 326
+ LS L FLDL N F G IP ++N + S++ L+L NNF ++P K T L L
Sbjct: 462 MICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSL 521
Query: 327 SLRENRLQGMISSVLV------VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQI 380
+ N+L+G L+ + ++ N P+W+ E L +L LRSNKF G +
Sbjct: 522 DVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPL 580
Query: 381 PAELCRL--TSLHILDLSHNNFSGTLP-------RCINNLTAMMNQENSMETDKEYDTFT 431
+ SL I+D+SHNNFSGTLP + + LT M+Q + E + D++
Sbjct: 581 YHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMT-EFWRYADSYY 639
Query: 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGK 491
E+ + V KG ++++ + + R +D SGN ++G+IPE + L L+ LNLS N
Sbjct: 640 HEMEM--VNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSV 697
Query: 492 IPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNA 551
IP + + LE++D S N LSG+IPQ +++L+FLS++N S N L G +P GTQ Q
Sbjct: 698 IPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKC 757
Query: 552 SCFAGN-NLCGAPLPKNCTDQNVPIPAEN--ENGSEDEDEMGYWLYVSTAFGFVVGFWCV 608
S F N L G L C D P E+ SE E+ M W+ + A+G V V
Sbjct: 758 SSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLV 815
Query: 609 IGPLLI--NRRW 618
IG N W
Sbjct: 816 IGHFYTSHNHEW 827
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 186/633 (29%), Positives = 269/633 (42%), Gaps = 133/633 (21%)
Query: 31 CIQSERKALLRFKQDLK-DPANRLASWSDGNCCTWAGVVCN-DSTGRVLELRLGNPFLHD 88
C + +AL F L+ P + S S +CC W G+ CN ++TGRV+ L LGN
Sbjct: 31 CHPHDLEALRDFIAHLEPKPDGWINSSSSTDCCNWTGITCNSNNTGRVIRLELGN----- 85
Query: 89 DEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDL 148
KL GK++ SL L + L+LS N F + IP+ + + +L+ +DL
Sbjct: 86 -------------KKLSGKLSESLGKLDEIRVLNLSRN-FIKDSIPLSIFNLKNLQTLDL 131
Query: 149 SRAELTGMIPHQLGNLFNLQYLDLSIDT----------HNPISFSFLYLE------NF-S 191
S +L+G IP + NL LQ DLS + HN + L NF S
Sbjct: 132 SSNDLSGGIPTSI-NLPALQSFDLSSNKFNGSLPSHICHNSTQIRVVKLAVNYFAGNFTS 190
Query: 192 WLSGLSLLKHLDLTGVDLS--TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSS 249
LL+HL L DL+ D F L L +L + L SL I N SS
Sbjct: 191 GFGKCVLLEHLCLGMNDLTGNIPEDLF----HLKRLNLLGIQENRLSGSLSR-EIRNLSS 245
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVF-------------------------------- 277
L LD+S+N F +P L L F
Sbjct: 246 LVRLDVSWNLFSGE-IPDVFDELPQLKFFLGQTNGFIGGIPKSLANSPSLNLLNLRNNSL 304
Query: 278 ----------------LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFT 321
LDLG N F G +P+ L + L++++L N F +P F
Sbjct: 305 SGRLMLNCTAMIALNSLDLGTNRFNGRLPENLPDCKRLKNVNLARNTFHGQVPESFKNFE 364
Query: 322 RLEYLSLRENRLQGMISSV---------------------------------LVVFDIGE 348
L Y SL + L + S++ L V +
Sbjct: 365 SLSYFSLSNSSLANISSALGILQHCKNLTTLVLTLNFHGEALPDDSSLHFEKLKVLVVAN 424
Query: 349 NGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408
+G++P W+ L L L N+ G IP+ + +L LDLS+N+F+G +P+ +
Sbjct: 425 CRLTGSMPRWLSSSNELQL-LDLSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEIPKSL 483
Query: 409 NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDI 468
L ++ ++ S+ F ++ + R L YN + ++L NNLSG I
Sbjct: 484 TKLESLTSRNISVNEPSPDFPFFMKRN----ESARALQYNQIFGFPPTIELGHNNLSGPI 539
Query: 469 PEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSH 528
EE NL L +L N L+G IP ++ M SLE++D S N LSG IP S+ L+FLS
Sbjct: 540 WEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSK 599
Query: 529 LNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCG 561
+++ NNL+G IP G Q Q F S F N+LCG
Sbjct: 600 FSVAYNNLSGVIPSGGQFQTFPNSSFESNHLCG 632
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Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 187/583 (32%), Positives = 268/583 (45%), Gaps = 114/583 (19%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
L D D ++L GKI +L +L L L+ N E + IP +G SL ++L +L
Sbjct: 218 LTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGD-IPAEIGNCSSLVQLELYDNQL 276
Query: 154 TGMIPHQLGNLFNLQYLDLSID----------------TH---------NPISFSFLYLE 188
TG IP +LGNL LQ L + + TH PIS +LE
Sbjct: 277 TGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLE 336
Query: 189 NFSWLS------------GLSLLKHLDLTGVDLSTAS-----DWFLVTNM---------- 221
+ L+ ++ L++L + V + S D L+TN+
Sbjct: 337 SLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLL 396
Query: 222 ---LPS-------LQVLKLSACSLHNSLP--------------------ELP--IANFSS 249
+PS L++L LS + +P E+P I N S+
Sbjct: 397 TGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSN 456
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
L TL ++ N TL P + L L L + +NS GPIP + NL L L L SN F
Sbjct: 457 LETLSVADNNLTGTLKP-LIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGF 515
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFDIGENGFSGNIPAWIGEKL 363
IP + T L+ L + N L+G I +L V D+ N FSG IPA KL
Sbjct: 516 TGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALF-SKL 574
Query: 364 LRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP----RCINNLTAMMNQEN 419
L L+ NKF+G IPA L L+ L+ D+S N +GT+P + N+ +N N
Sbjct: 575 ESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSN 634
Query: 420 SMETDKEYDTFTIELSILVVMKGRELAYN----------TMLKLVRCMDLSGNNLSGDIP 469
++ T T EL L +++ +L+ N K V +D S NNLSG IP
Sbjct: 635 NLLTG----TIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIP 690
Query: 470 EEM-TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSH 528
+E+ + + SLNLS N +G+IP++ G M L S+D S N L+G IP+S+++L+ L H
Sbjct: 691 DEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKH 750
Query: 529 LNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLP-KNCT 569
L L+ NNL G +P + NAS GN +LCG+ P K CT
Sbjct: 751 LKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCT 793
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 193/661 (29%), Positives = 283/661 (42%), Gaps = 93/661 (14%)
Query: 34 SERKALLRFKQDLKDPANRLASW---------SDGNCCTWAGVVCNDSTGRVLELRLGNP 84
SE++ LL FK DL DP+N L W S+ C W GV C D+ G V +L L N
Sbjct: 29 SEQEILLAFKSDLFDPSNNLQDWKRPENATTFSELVHCHWTGVHC-DANGYVAKLLLSNM 87
Query: 85 FLHDDEPFWLEDY------DDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLG 138
L + ++ + D + + SL +L L +D+S N+F P LG
Sbjct: 88 NLSGNVSDQIQSFPSLQALDLSNNAFESSLPKSLSNLTSLKVIDVSVNSFFGT-FPYGLG 146
Query: 139 FMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS---IDTHNPISFSFLYLENFSWLSG 195
L H++ S +G +P LGN L+ LD + P SF L F LSG
Sbjct: 147 MATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSG 206
Query: 196 LSLLKHLDLTGVDLSTASDWFLVTN-----------MLPSLQVLKLSACSLHNSLPELPI 244
+ + +LS+ L N L LQ L L+ +L +P +
Sbjct: 207 NNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPS-SL 265
Query: 245 ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304
L T+ L N L P L G++ LVFLDL N G IP + L +L+ L+L
Sbjct: 266 GQLKQLTTVYLYQNRLTGKL-PRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNL 324
Query: 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI------SSVLVVFDIGENGFSGNIPAW 358
N IP+ + + LE L L +N L G + +S L D+ N SG+IP+
Sbjct: 325 MRNQLTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPS- 383
Query: 359 IGEKLLRNLI-LRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR----------- 406
G RNL L L +N F GQIP E+ +L + + N+ SG++P
Sbjct: 384 -GLCYSRNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLPMLQHL 442
Query: 407 --CINNLTAMMNQENSMETDKEY---------------------DTFTIELSILVVMKGR 443
NNLT + + ++ T + TF +
Sbjct: 443 ELAKNNLTGKIPDDIALSTSLSFIDISFNHLSSLSSSIFSSPNLQTFIASHNNFAGKIPN 502
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503
++ L + +DLS N+ SG IPE + + L SLNL N L G+IP+ + M L
Sbjct: 503 QIQDRPSLSV---LDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLA 559
Query: 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNN-LCGA 562
+D S N L+G IP + + L LN+S N L G IP + GNN LCG
Sbjct: 560 VLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCGG 619
Query: 563 PLPKNCTDQNVPIPAENENGSEDEDEMGYWLYVSTA-FGFVVGFWCVI--GPLLINRRWR 619
LP C+ +++ + A+ N ++V+ A FGF+VG ++ G + + RW
Sbjct: 620 VLPP-CS-KSLALSAKGRNPGR--------IHVNHAVFGFIVGTSVIVAMGMMFLAGRWI 669
Query: 620 Y 620
Y
Sbjct: 670 Y 670
|
Involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 195/661 (29%), Positives = 289/661 (43%), Gaps = 112/661 (16%)
Query: 31 CIQS-ERKALLRFKQDLKDPANRLASWS---DGNCCTWAGVVCNDSTGRVLELRLGNPFL 86
C+ + E + LL FK ++DP L+SWS + C W+GVVCN+ RV+ L L +
Sbjct: 26 CLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNN-ISRVVSLDLSGKNM 84
Query: 87 HDDE--------PFWLEDYDDETSKLIGKINPSLLDLKH--LVYLDLSNNNFENNQIPVF 136
PF L+ + + L G I + L YL+LSNNNF + IP
Sbjct: 85 SGQILTAATFRLPF-LQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNF-SGSIP-- 140
Query: 137 LGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS---IDTHNPISFSFLYLENFSWL 193
GF+ +L +DLS TG I + +G NL+ LDL + H P YL N S L
Sbjct: 141 RGFLPNLYTLDLSNNMFTGEIYNDIGVFSNLRVLDLGGNVLTGHVPG-----YLGNLSRL 195
Query: 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL 253
L+L + GV + + +L+ + L +L +P I SSL L
Sbjct: 196 EFLTLASNQLTGGVPVELGK--------MKNLKWIYLGYNNLSGEIP-YQIGGLSSLNHL 246
Query: 254 DLSYNE--------------------FDNTL---VPSWLFGLSHLVFLDLGFNSFGGPIP 290
DL YN + N L +P +F L +L+ LD NS G IP
Sbjct: 247 DLVYNNLSGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIP 306
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVL------VVF 344
+ + + SLE L L SNN IP + RL+ L L NR G I + L V
Sbjct: 307 ELVAQMQSLEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVL 366
Query: 345 DIGENGFSGNIPAWIGEK-LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403
D+ N +G +P + + L LIL SN D QIP L SL + L +N FSG
Sbjct: 367 DLSTNNLTGKLPDTLCDSGHLTKLILF--SNSLDSQIPPSLGMCQSLERVRLQNNGFSGK 424
Query: 404 LPRCINNLTAM----MNQENSMETDKEYDTFTIELSILVV---------------MKGRE 444
LPR L + ++ N +D +E+ L V +K +
Sbjct: 425 LPRGFTKLQLVNFLDLSNNNLQGNINTWDMPQLEMLDLSVNKFFGELPDFSRSKRLKKLD 484
Query: 445 LAYNTMLKLVRC----------MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPE 494
L+ N + +V +DLS N ++G IP E+++ L +L+LSHN G+IP
Sbjct: 485 LSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPS 544
Query: 495 NVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCF 554
+ + L +D S N LSG IP+++ ++ L +N+S N L G +P NA+
Sbjct: 545 SFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATAV 604
Query: 555 AGN-NLCGAPLPKNCTDQNVPIPAENENGSEDEDEMGYWLYVSTAFG-----FVVGFWCV 608
GN +LC +N P + ++ +WL +++ F V GF+ V
Sbjct: 605 EGNIDLCS----ENSASGLRPCKVVRKRSTK-----SWWLIITSTFAAFLAVLVSGFFIV 655
Query: 609 I 609
+
Sbjct: 656 L 656
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 189/578 (32%), Positives = 257/578 (44%), Gaps = 106/578 (18%)
Query: 101 TSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFL-GFMGSLRHIDLSRAELTGMIPH 159
+++ +G I P L LK L YL L+ N F +IP FL G +L +DLS G +P
Sbjct: 278 SNQFVGPIPP--LPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 334
Query: 160 QLG-------------------------NLFNLQYLDLSIDTHNPISFSFLYLENFSWLS 194
G + L+ LDLS + FS E+ + LS
Sbjct: 335 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-----EFSGELPESLTNLS 389
Query: 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLD 254
SLL LDL+ + S L N +LQ L L +P ++N S L +L
Sbjct: 390 A-SLLT-LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLH 446
Query: 255 LSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP 314
LS+N T +PS L LS L L L N G IP L + +LE L L N+ IP
Sbjct: 447 LSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 505
Query: 315 TWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRS 373
+ L T L ++SL NRL +G IP WIG L NL IL+L +
Sbjct: 506 SGLSNCTNLNWISLSNNRL------------------TGEIPKWIGR--LENLAILKLSN 545
Query: 374 NKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETD----KEY-- 427
N F G IPAEL SL LDL+ N F+GT+P AM Q + + K Y
Sbjct: 546 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP------AAMFKQSGKIAANFIAGKRYVY 599
Query: 428 ---DTFTIEL----SILVVMKGRELAYNTMLKLVRC-----------------------M 457
D E ++L R N + C +
Sbjct: 600 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 659
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517
D+S N LSG IP+E+ ++ L LNL HN ++G IP+ VG +R L +D S N L GRIP
Sbjct: 660 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 719
Query: 518 QSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLPKNCTDQNVPIP 576
Q++S+LT L+ ++LS+NNL+G IP Q + F + F N LCG PLP+ C N
Sbjct: 720 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGY 778
Query: 577 AENENGSEDEDEMGYWLYVSTAFGFVVGFWCVIGPLLI 614
A ++ L S A G + F C+ G +L+
Sbjct: 779 AHHQ---RSHGRRPASLAGSVAMGLLFSFVCIFGLILV 813
|
Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 183/627 (29%), Positives = 267/627 (42%), Gaps = 131/627 (20%)
Query: 33 QSERKALLRFKQDL-KDPANRLASWSDG-NCCTWAGVVCNDSTGRVLELRLGNPFLHDDE 90
+++R+ALL+FK + +D L+SW+ C W GV C RV L LG
Sbjct: 23 ETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGR------- 75
Query: 91 PFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHID--- 147
+L G I+PS+ +L LV LDL N F IP +G + L ++D
Sbjct: 76 -----------LQLGGVISPSIGNLSFLVSLDLYEN-FFGGTIPQEVGQLSRLEYLDMGI 123
Query: 148 ---------------------LSRAELTGMIPHQLGNLFNLQYLDL---SIDTHNPISFS 183
L L G +P +LG+L NL L+L ++ P S
Sbjct: 124 NYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTS-- 181
Query: 184 FLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 243
L N + L L+L H +L G S + L + L+L A + P
Sbjct: 182 ---LGNLTLLEQLAL-SHNNLEGEIPSDVAQ-------LTQIWSLQLVANNFSGVFPP-A 229
Query: 244 IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLD 303
+ N SSL L + YN F L P L +L+ ++G N F G IP L N+++LE L
Sbjct: 230 LYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLG 289
Query: 304 LRSNNFISSIPTW-----------------------------LHKFTRLEYLSLRENRLQ 334
+ NN SIPT+ L T+LE L + NRL
Sbjct: 290 MNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLG 349
Query: 335 G-------MISSVLVVFDIGENGFSGNIPAWIGE-----------------------KLL 364
G +S+ LV D+G SG+IP IG KLL
Sbjct: 350 GDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLL 409
Query: 365 RNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN---QENSM 421
L L SN+ G IPA + +T L LDLS+N F G +P + N + ++ +N +
Sbjct: 410 NLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKL 469
Query: 422 ETDKEYDTFTIELSILVVMKGRELAYN-----TMLKLVRCMDLSGNNLSGDIPEEMTNLL 476
+ I+ + + M G L + L+ + + L N LSG +P+ + N L
Sbjct: 470 NGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCL 529
Query: 477 ALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536
++SL L N G IP+ + + ++ +D S N LSG IP+ +S + L +LNLS NNL
Sbjct: 530 TMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNL 588
Query: 537 TGKIPLGTQLQGFNASCFAGNN-LCGA 562
GK+P+ + GNN LCG
Sbjct: 589 EGKVPVKGIFENATTVSIVGNNDLCGG 615
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 171/601 (28%), Positives = 270/601 (44%), Gaps = 93/601 (15%)
Query: 34 SERKALLRFKQDLKD-PANRLASW-SDGNCC-TWAGVVCNDSTGRVLELRLGNPFLHDDE 90
SER LL+FK + D P N LASW SDG+ C ++ G+ CN G V ++ L N
Sbjct: 25 SERDILLQFKGSISDDPYNSLASWVSDGDLCNSFNGITCN-PQGFVDKIVLWN------- 76
Query: 91 PFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSR 150
+ L G + P L +LK + L+L N F N +P+ + +L I++S
Sbjct: 77 -----------TSLAGTLAPGLSNLKFIRVLNLFGNRFTGN-LPLDYFKLQTLWTINVSS 124
Query: 151 AELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLS 210
L+G IP + L +L++LDLS + F+ +SL K D T
Sbjct: 125 NALSGPIPEFISELSSLRFLDLSKN-------------GFTGEIPVSLFKFCDKT----- 166
Query: 211 TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF 270
+ + L+ ++ S+P I N ++L D SYN L P +
Sbjct: 167 ---------------KFVSLAHNNIFGSIPA-SIVNCNNLVGFDFSYNNLKGVL-PPRIC 209
Query: 271 GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330
+ L ++ + N G + + +Q L +DL SN F P + F + Y ++
Sbjct: 210 DIPVLEYISVRNNLLSGDVSEEIQKCQRLILVDLGSNLFHGLAPFAVLTFKNITYFNVSW 269
Query: 331 NRLQGMISSV------LVVFDIGENGFSGNIPAWI-GEKLLRNLILRLRSNKFDGQIPAE 383
NR G I + L D N +G IP + G K L+ +L L SNK +G IP
Sbjct: 270 NRFGGEIGEIVDCSESLEFLDASSNELTGRIPTGVMGCKSLK--LLDLESNKLNGSIPGS 327
Query: 384 LCRLTSLHILDLSHNNFSGTLPRCINNLT--AMMNQENSMETDKEYDTFTIELSILVVMK 441
+ ++ SL ++ L +N+ G +PR I +L ++N N + +
Sbjct: 328 IGKMESLSVIRLGNNSIDGVIPRDIGSLEFLQVLNLHN------------------LNLI 369
Query: 442 GRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRS 501
G + +++ +D+SGN+L G I +++ NL ++ L+L N L G IP +G +
Sbjct: 370 GEVPEDISNCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSK 429
Query: 502 LESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNN-LC 560
++ +D S N LSG IP S+ SL L+H N+S NNL+G IP +Q F +S F+ N LC
Sbjct: 430 VQFLDLSQNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGSSAFSNNPFLC 489
Query: 561 GAPLPKNCTDQNVPIPAENENGSEDEDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRY 620
G PL C + + N + + FG C++ L + R R
Sbjct: 490 GDPLVTPCNSRGAAAKSRNSDALSISVIIVIIAAAVILFGV-----CIVLALNLRARKRR 544
Query: 621 K 621
K
Sbjct: 545 K 545
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 179/600 (29%), Positives = 263/600 (43%), Gaps = 103/600 (17%)
Query: 27 AYIGCIQSERKA-LLRFKQDLKDPANRLASWS---DGNCCTWAGVVCNDSTGRVLELRLG 82
+ + + SE A LL K+ KD N L W+ + C W GV C + T V+ L L
Sbjct: 17 SLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLS 76
Query: 83 NPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGS 142
+ L G+I+P++ DLK L+ +DL N + QIP +G S
Sbjct: 77 D------------------LNLDGEISPAIGDLKSLLSIDLRGNRL-SGQIPDEIGDCSS 117
Query: 143 LRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT-HNPISFSFLYLENFSWL-------S 194
L+++DLS EL+G IP + L L+ L L + PI + + N L S
Sbjct: 118 LQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLS 177
Query: 195 GL--------SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK------LSACSLHNSLP 240
G +L++L L G +L V N+ P L L + SL S+P
Sbjct: 178 GEIPRLIYWNEVLQYLGLRGNNL--------VGNISPDLCQLTGLWYFDVRNNSLTGSIP 229
Query: 241 ELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLE 300
E I N ++ LDLSYN+ + + G + L L N G IP + + +L
Sbjct: 230 ET-IGNCTAFQVLDLSYNQLTGEI--PFDIGFLQVATLSLQGNQLSGKIPSVIGLMQALA 286
Query: 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFDIGENGFSGN 354
LDL N SIP L T E L L N+L G I S L ++ +N +G+
Sbjct: 287 VLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGH 346
Query: 355 IPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414
IP +G KL L + +N +G IP L T+L+ L++ N FSGT+PR L +M
Sbjct: 347 IPPELG-KLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESM 405
Query: 415 MNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTN 474
++ ++ +ELS + + +DLS N ++G IP + +
Sbjct: 406 TYL--NLSSNNIKGPIPVELS--------------RIGNLDTLDLSNNKINGIIPSSLGD 449
Query: 475 LLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT---------- 524
L L +NLS N + G +P + G +RS+ ID S N +SG IP+ ++ L
Sbjct: 450 LEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENN 509
Query: 525 -------------FLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLPKNCTD 570
L+ LN+S NNL G IP F+ F GN LCG+ L C D
Sbjct: 510 NLTGNVGSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCGSWLNSPCHD 569
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 636 | ||||||
| 356561562 | 721 | PREDICTED: probable leucine-rich repeat | 0.902 | 0.796 | 0.400 | 1e-116 | |
| 224072885 | 1024 | predicted protein [Populus trichocarpa] | 0.863 | 0.536 | 0.381 | 6e-95 | |
| 255547794 | 909 | serine-threonine protein kinase, plant-t | 0.822 | 0.575 | 0.399 | 9e-91 | |
| 255543959 | 602 | serine-threonine protein kinase, plant-t | 0.817 | 0.863 | 0.397 | 1e-90 | |
| 350284771 | 978 | receptor-like protein [Malus x domestica | 0.831 | 0.540 | 0.403 | 1e-90 | |
| 350284745 | 976 | receptor-like protein [Malus x domestica | 0.831 | 0.542 | 0.405 | 1e-90 | |
| 350284747 | 978 | receptor-like protein [Malus x domestica | 0.831 | 0.540 | 0.405 | 2e-90 | |
| 302143881 | 691 | unnamed protein product [Vitis vinifera] | 0.897 | 0.826 | 0.381 | 2e-90 | |
| 350284739 | 978 | receptor-like protein [Malus x domestica | 0.816 | 0.530 | 0.390 | 4e-90 | |
| 209970607 | 1045 | M18S-3Ap [Malus floribunda] | 0.811 | 0.493 | 0.398 | 5e-90 |
| >gi|356561562|ref|XP_003549050.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 287/716 (40%), Positives = 367/716 (51%), Gaps = 142/716 (19%)
Query: 31 CIQSERKALLRFKQDLKDPANRLASWSDG--NCCTWAGVVCNDSTGRVLELRLGNPFLHD 88
CI SER+ LL+FK +L DP+NRL SW+ NCC W GV+C++ T +L+L L
Sbjct: 25 CIPSERETLLKFKNNLIDPSNRLWSWNHNHTNCCHWYGVLCHNVTSHLLQLHL------- 77
Query: 89 DEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNF--ENNQIPVFLGFMGSLRHI 146
+ G+I+P L DLKHL YLDLS N F E IP FLG M SL H+
Sbjct: 78 ---------NTTRWSFGGEISPCLADLKHLNYLDLSGNYFLGEGMSIPSFLGTMTSLTHL 128
Query: 147 DLSRAELTGMIPHQLGNLFNLQYLDLS-IDTHNPISFSFLYLENFSWLSGLSLLKHLDLT 205
+LS G IP Q+GNL NL YLDL + P L EN W+S + L++LDL+
Sbjct: 129 NLSYTGFRGKIPPQIGNLSNLVYLDLRYVANRTP-----LLAENVEWVSSMWKLEYLDLS 183
Query: 206 GVDLSTASDWFLVTNMLPSLQVLKLSACSL-HNSLPELPIANFSSLYTL----------- 253
+LS A DW LPSL L L C+L H + P L NFSSL TL
Sbjct: 184 NANLSKAFDWLHTLQSLPSLTHLYLLECTLPHYNEPSL--LNFSSLQTLHLSFTSYSPAI 241
Query: 254 -----------------------------------------DLSYNEFDNTLVPSWLFGL 272
DLS+N F ++ +P L+GL
Sbjct: 242 SFVPKWIFKLKKLVSLQLSDNYEIQGPIPCGIRNLTLLQNLDLSFNSFSSS-IPDCLYGL 300
Query: 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHL------------------------------ 302
L FL+L N+ G I D L NLTSL L
Sbjct: 301 HRLKFLNLMDNNLHGTISDALGNLTSLVELHLLYNQLEGTIPTSLGNLTSLVELHLRIPD 360
Query: 303 -----------DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI------SSVLVVFD 345
+L+SN+F+ + P + L+ L +R N L G+ +S L+ D
Sbjct: 361 CWINWPFLVEVNLQSNHFVGNFPPSMGSLAELQSLEIRNNLLSGIFPTSLKKTSQLISLD 420
Query: 346 IGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
+GEN SG IP W+GEKL ILRLRSN F G IP E+C+++ L +LDL+ NN SG +P
Sbjct: 421 LGENNLSGCIPTWVGEKLSNMKILRLRSNSFSGHIPNEICQMSLLQVLDLAKNNLSGNIP 480
Query: 406 RCINNLTAMMNQENSM--------ETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCM 457
C NL+AM S D Y + + +S+L+ +KGR Y +L LV +
Sbjct: 481 SCFRNLSAMTLVNRSTYPLIYSHAPNDTRYSSVSGIVSVLLWLKGRGDEYGNILGLVTSI 540
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517
DLS N L G+IP E+T+L L LNLSHN L G IPE + M SL++IDFS N +SG IP
Sbjct: 541 DLSSNKLLGEIPREITDLNGLNFLNLSHNQLIGPIPEGIDNMGSLQTIDFSRNQISGEIP 600
Query: 518 QSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNVPIPA 577
+IS+L+FLS L++S N+L GKIP GTQLQ F+AS F GNNLCG PLP NC+
Sbjct: 601 PTISNLSFLSMLDVSYNHLKGKIPTGTQLQTFDASRFIGNNLCGPPLPINCSSNGKTHSY 660
Query: 578 ENENGSEDEDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIAKL 633
E +G W +VS GFVVG W VI PLLI R WR+ Y HFLD + KL
Sbjct: 661 EGSHGHGVN-----WFFVSATIGFVVGLWIVIAPLLICRSWRHVYFHFLDHLWFKL 711
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 355 bits (910), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 245/643 (38%), Positives = 338/643 (52%), Gaps = 94/643 (14%)
Query: 65 AGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLS 124
+ V N VLE+ LG +E +E D L G++ L ++L YL L
Sbjct: 389 SNVKLNQDIAEVLEVLLG---CVSEE---VESLDLAGCLLFGQLTNHLGKFRNLAYLGLR 442
Query: 125 NNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHN------ 178
+N+ + IP+ LG + SLR + LS +L G +P G L L+ +D+S HN
Sbjct: 443 SNSI-SGPIPMALGELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDIS---HNLFQGEV 498
Query: 179 -PISFSFLY-LENFS-----------------------------------WLSGLSLLKH 201
+ F+ L L NFS W+ L L +
Sbjct: 499 SEVHFANLKNLRNFSAAGNQLNLRVSPDWIPPQLVFIDLRSWNVGPQFPKWVRPLEHLSY 558
Query: 202 LDLTGVDLSTASD-WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL-DLSYNE 259
LD++ +S+ WF + ++ L LS + +P +F++ Y L DLS N+
Sbjct: 559 LDISNSSISSTIPIWFWTMSF--RMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQ 616
Query: 260 F-----------------DNTLVPSWLFGLSHLV-------FLDLGFNSFGGPIPDGLQN 295
F +N+ S L L H + L+LG N G IPD +
Sbjct: 617 FKGPLPSIFSNVGALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSS 676
Query: 296 LTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFDIGEN 349
L + L +N +IP + + LE L +R + L G + + L+ D+ EN
Sbjct: 677 WQYLVAIKLSNNKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAEN 736
Query: 350 GFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN 409
G++PAWIG++ ++L +R+NKF G+IP ELC L SL ILDL+HN S ++P C N
Sbjct: 737 ELVGSMPAWIGKRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFN 796
Query: 410 NLTAMMNQENSMET---DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSG 466
L+AM + +S+ D TF ++L+VMKG+ + Y+T+LK VR +DLS N L G
Sbjct: 797 KLSAMATRNDSLGKIYLDSGSSTFD---NVLLVMKGKVVEYSTILKFVRSIDLSSNALCG 853
Query: 467 DIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFL 526
+IPEE+T L LQSLNLS N L G+IPE +G++R LES+DFS N LSG IPQS+S LTFL
Sbjct: 854 EIPEEVTRLSELQSLNLSQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFL 913
Query: 527 SHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNVPIPAENENGSEDE 586
SHLNLSDN L G+IP GTQLQ F S F+GN LCG PL KNC+ N E+E +
Sbjct: 914 SHLNLSDNRLRGRIPSGTQLQSFGPSSFSGNELCGPPLSKNCSVDN-KFHVEHEREEDGN 972
Query: 587 DEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRI 629
G W YVS GF+VGFW V+GPL+ NRRWRY Y HFLDR+
Sbjct: 973 GLKGRWFYVSMVLGFIVGFWGVVGPLMFNRRWRYVYYHFLDRL 1015
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547794|ref|XP_002514954.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223546005|gb|EEF47508.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 341 bits (874), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 242/606 (39%), Positives = 322/606 (53%), Gaps = 83/606 (13%)
Query: 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFN 166
K++ L+ K LV L LS+N+ + IP+ LG + SLR++ L +L G +P LG L N
Sbjct: 303 KLSNHLIHFKALVSLYLSSNSI-SGPIPLALGELMSLRYLYLDNNKLNGSMPVSLGGLTN 361
Query: 167 LQYLDLS--------IDTH---------------------------NPISFSFLYLENFS 191
L+ L +S D H PI L L +++
Sbjct: 362 LESLSISDNLLEGNVSDIHFAKLIKLRYFDASENHLMLRVSSDWIPPPIHLQVLQLSSWA 421
Query: 192 -------WLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 243
WLS L L LDL+ +S+ WF N L L LS ++ ++P++P
Sbjct: 422 IGPQFPRWLSLLKSLAVLDLSNSKISSNIPFWFW--NSSSQLFYLNLSHNQIYGNIPDIP 479
Query: 244 IANFSSLY-TLDLSYNEFDNTL-----------VPSWLFG--LSHLV-----------FL 278
+ Y T+DLS N F L + + LF +SH V +
Sbjct: 480 YFSHYYYYSTIDLSSNHFQGPLPHVSSNVTDLYLSNNLFSGSISHFVCRKIHKVKRMRLI 539
Query: 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS 338
+L N G I D + ++LE++ L +NNF +IP + T L+ L LR N L G I
Sbjct: 540 NLDNNFLSGQIRDCWSSWSNLEYIRLSNNNFSGNIPRSIGTLTFLKSLHLRNNSLSGEIP 599
Query: 339 ------SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHI 392
+ LV D+GEN G+IP W+G L LR NKF G IP ELC+L SL I
Sbjct: 600 LSLRDCTSLVSLDLGENQLIGHIPPWMGASFPSMAFLNLRENKFHGHIPPELCQLASLQI 659
Query: 393 LDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELS--ILVVMKGRELAYNTM 450
LDL+HN+ + T+P CI+ L+AM N + Y + S +V KGR + Y ++
Sbjct: 660 LDLAHNDLARTIPSCIDKLSAM-TTSNPAASFYGYRSLYASASDYATIVSKGRIVEYFSI 718
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
L V+ +DLSGNNLSGDIPE +T L+ LQSLNLS N L+G+IPE++GAM +E+IDFS N
Sbjct: 719 LGFVKSLDLSGNNLSGDIPEVLTKLIGLQSLNLSDNLLSGRIPEDIGAMVEVEAIDFSQN 778
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNN-LCGAPLPKNCT 569
L G IPQS++ LT+LS LNLSDNNL+G IP GTQLQ FNAS F GN LCG PL NCT
Sbjct: 779 QLFGEIPQSMTKLTYLSDLNLSDNNLSGTIPTGTQLQSFNASSFTGNKGLCGPPLTNNCT 838
Query: 570 DQNVPIPAE--NENGSEDEDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLD 627
V E NEN D YVS A GF+VGFW GPL++NR+WR+ Y HFLD
Sbjct: 839 VPGVQPRTESSNENRKSDGGFEVNGFYVSMALGFIVGFWGAFGPLVVNRQWRHAYFHFLD 898
Query: 628 RIIAKL 633
+ K+
Sbjct: 899 HLWDKV 904
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543959|ref|XP_002513042.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548053|gb|EEF49545.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 227/571 (39%), Positives = 310/571 (54%), Gaps = 51/571 (8%)
Query: 100 ETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPH 159
+ + + G I S+ DLK + LDLS NN N +P+ G + L +D S L G +
Sbjct: 39 QGNSISGPIPLSIGDLKFMKLLDLSQNNL-NKTLPLSFGELAELETVDHSYNSLRGDVSE 97
Query: 160 -QLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD---W 215
L L D S + L L S L +LDL +L AS W
Sbjct: 98 SHFARLTKLWKFDASGNQ--------LRLRVDPNWSPPPYLYYLDLGSWNLGIASTIPFW 149
Query: 216 FLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSW------- 268
F N +L L +S +H +P+ + +S +DLS N F L +
Sbjct: 150 FW--NFSSNLNYLNISHNQIHGVIPQEQVREYSG-ELIDLSSNRFQGPLPYIYSNARALY 206
Query: 269 -----------------LFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFIS 311
+ L L LDLG N G +PD + L ++L +NN
Sbjct: 207 LSNNSFSGPISKFLCHKMNELRFLEVLDLGDNHLSGELPDCWMSWDGLVVINLSNNNLSG 266
Query: 312 SIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFDIGENGFSGNIPAWIGEKLLR 365
+IP + +RLE L LR N L G I + L D+G+N GNIP WIGE
Sbjct: 267 TIPRSIGGLSRLESLHLRNNTLTGEIPPSLRNCTGLSTLDLGQNQLVGNIPRWIGETFPD 326
Query: 366 NLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS--MET 423
+IL LRSNKF G +P +LC ++SL+ILDL+ NN SGT+P+C+NN +AM+++++S M
Sbjct: 327 MVILSLRSNKFQGDVPKKLCLMSSLYILDLADNNLSGTIPKCLNNFSAMVSRDDSIGMLL 386
Query: 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNL 483
+ + ++ S+ +VMKG+ Y+++LK VR +DLS N LSG+IPEE +L LQSLNL
Sbjct: 387 EGDASSWPFYESMFLVMKGKMDGYSSILKFVRSIDLSKNKLSGEIPEETISLKGLQSLNL 446
Query: 484 SHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
SHN L G+IP ++G M SLES+DFS N L G IP+S++ LTFLS LNLS NNLTG+IP G
Sbjct: 447 SHNLLTGRIPTDIGDMESLESLDFSQNQLFGEIPRSMAKLTFLSFLNLSFNNLTGRIPTG 506
Query: 544 TQLQGFNASCFAGNN-LCGAPLPKNCT-DQNVPIPAENENGSEDEDEMGYWLYVSTAFGF 601
TQLQ F++ F GN LCG P+ NC+ D +P + ++ E+ W YVS A GF
Sbjct: 507 TQLQSFSSFSFKGNKELCGPPVTMNCSGDSELPGTIDGRGDDQNGQEVN-WFYVSVALGF 565
Query: 602 VVGFWCVIGPLLINRRWRYKYCHFLDRIIAK 632
VVGFW GPL++NRRWR Y FLD + K
Sbjct: 566 VVGFWGAFGPLVLNRRWRQVYFRFLDSLWDK 596
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350284771|gb|AEQ27757.1| receptor-like protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 241/597 (40%), Positives = 318/597 (53%), Gaps = 68/597 (11%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
L +D ++ + G I SL +L L LD+S N F I V +G + L +D+S L
Sbjct: 385 LRHFDLSSNSISGPIPMSLGNLSSLEKLDISGNQFNGTFIEV-IGQLKMLMDLDISYNSL 443
Query: 154 TGMIPH-QLGNLFNLQY---------LDLSIDTHNPISFSFLYLENFS-------WLSGL 196
G + NL L++ L S D P L L+++ WL
Sbjct: 444 EGAMSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQ 503
Query: 197 SLLKHLDLTGVDLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 255
+ LK L L+G +S T WF N+ ++ L LS L+ + + FS T+DL
Sbjct: 504 TQLKELSLSGTGISSTIPTWFW--NLTSQVEYLNLSRNQLYGQIQNIVAVPFS---TVDL 558
Query: 256 SYNEFDNTL--VPSWLFGL-------SHLVF---------------LDLGFNSFGGPIPD 291
S N+F L VP+ L L S VF L LG N G +PD
Sbjct: 559 SSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPKQHYVLHLGNNFLTGKVPD 618
Query: 292 GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFD 345
+ +SLE L+L +NN ++P + L L LR N L G + + L V D
Sbjct: 619 CWMSWSSLEFLNLENNNLTGNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVD 678
Query: 346 IGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
+ ENGFSG+IP WIG LL LILR SNKF+G IP E+C LTSL ILDL+HN SG +P
Sbjct: 679 LSENGFSGSIPTWIGNSLLNVLILR--SNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIP 736
Query: 406 RCINNLTAMMNQENSMETDKEYDT----FTIELSILVVMKGRELAYNTMLKLVRCMDLSG 461
RC ++L+AM + S + + T F + + ++V KG E+ Y+ +L V+ MDLS
Sbjct: 737 RCFHDLSAMADFSESFSPTRGFGTSAHMFELSDNAILVKKGIEMEYSKILGFVKGMDLSC 796
Query: 462 NNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSIS 521
N + G+IPEE+T LLALQSLNLS+N G+IP +G M LES+DFS N L G IPQS++
Sbjct: 797 NFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSKIGNMAWLESLDFSMNQLDGEIPQSMT 856
Query: 522 SLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNVPIPAENEN 581
+LTFLSHLNLS NNLTG+IP TQLQ + S F GN LCGAPL K+C+ V PA E
Sbjct: 857 NLTFLSHLNLSYNNLTGRIPESTQLQLLDQSSFVGNELCGAPLHKHCSANGVIPPATVEQ 916
Query: 582 GSED-----EDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIAKL 633
D EDE W YVS GF GFW V+G LL+N W L+RI+ K+
Sbjct: 917 DGGDGYRLLEDE---WFYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRIVLKM 970
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350284745|gb|AEQ27744.1| receptor-like protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 242/597 (40%), Positives = 318/597 (53%), Gaps = 68/597 (11%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
L +D ++ + G I SL +L L LD+S N F I V +G + L +D+S L
Sbjct: 383 LRHFDLSSNSISGPIPMSLGNLSSLEKLDISGNQFNGTFIEV-IGQLKMLMDLDISYNSL 441
Query: 154 TGMIPH-QLGNLFNLQY---------LDLSIDTHNPISFSFLYLENFS-------WLSGL 196
G + NL L++ L S D P L L+++ WL
Sbjct: 442 EGAMSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQ 501
Query: 197 SLLKHLDLTGVDLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 255
+ LK L L+G +S T WF N+ ++ L LS L+ + + FS T+DL
Sbjct: 502 TQLKELSLSGTGISSTIPTWFW--NLTSQVEYLNLSRNQLYGQIQNIVAVPFS---TVDL 556
Query: 256 SYNEFDNTL--VPSWLFGL-------SHLVF---------------LDLGFNSFGGPIPD 291
S N+F L VP+ L L S VF L LG N G +PD
Sbjct: 557 SSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPKQHYVLHLGNNFLTGKVPD 616
Query: 292 GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFD 345
+ +SLE L+L +NN ++P + L L LR N L G + + L V D
Sbjct: 617 CWMSWSSLEFLNLENNNLTGNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVD 676
Query: 346 IGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
+ ENGFSG+IP WIG LL LILR SNKF+G IP E+C LTSL ILDL+HN SG +P
Sbjct: 677 LSENGFSGSIPTWIGNSLLNVLILR--SNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIP 734
Query: 406 RCINNLTAMMNQENSMETDKEYDT----FTIELSILVVMKGRELAYNTMLKLVRCMDLSG 461
RC ++L+AM + S + + T F + + ++V KG E+ Y+ +L V+ MDLS
Sbjct: 735 RCFHDLSAMADFSESFSPTRGFGTSAHMFELSDNAILVKKGIEMEYSKILGFVKGMDLSC 794
Query: 462 NNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSIS 521
N + G+IPEE+T LLALQSLNLS+N G+IP +G M LES+DFS N L G IPQS++
Sbjct: 795 NFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSKIGNMAWLESLDFSMNQLDGEIPQSMT 854
Query: 522 SLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNVPIPAENEN 581
+LTFLSHLNLS NNLTG+IP TQLQ + S F GN LCGAPL K+C+ V PA E
Sbjct: 855 NLTFLSHLNLSYNNLTGRIPESTQLQLLDQSSFVGNELCGAPLHKHCSANGVIPPATVEQ 914
Query: 582 GSED-----EDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIAKL 633
D EDE W YVS GF GFW V+G LLIN W L+RI+ K+
Sbjct: 915 DGGDGYRLLEDE---WFYVSLGVGFFTGFWIVLGSLLINMPWSILLSQLLNRIVLKM 968
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350284747|gb|AEQ27745.1| receptor-like protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 242/597 (40%), Positives = 318/597 (53%), Gaps = 68/597 (11%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
L +D ++ + G I SL +L L LD+S N F I V +G + L +D+S L
Sbjct: 385 LRHFDLSSNSISGPIPMSLGNLSSLEKLDISGNQFNGTFIEV-IGQLKMLMDLDISYNSL 443
Query: 154 TGMIPH-QLGNLFNLQY---------LDLSIDTHNPISFSFLYLENFS-------WLSGL 196
G + NL L++ L S D P L L+++ WL
Sbjct: 444 EGAMSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQ 503
Query: 197 SLLKHLDLTGVDLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 255
+ LK L L+G +S T WF N+ ++ L LS L+ + + FS T+DL
Sbjct: 504 TQLKELSLSGTGISSTIPTWFW--NLTSQVEYLNLSRNQLYGQIQNIVAVPFS---TVDL 558
Query: 256 SYNEFDNTL--VPSWLFGL-------SHLVF---------------LDLGFNSFGGPIPD 291
S N+F L VP+ L L S VF L LG N G +PD
Sbjct: 559 SSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPKQHYVLHLGNNFLTGKVPD 618
Query: 292 GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFD 345
+ +SLE L+L +NN ++P + L L LR N L G + + L V D
Sbjct: 619 CWMSWSSLEFLNLENNNLTGNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVD 678
Query: 346 IGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
+ ENGFSG+IP WIG LL LILR SNKF+G IP E+C LTSL ILDL+HN SG +P
Sbjct: 679 LSENGFSGSIPTWIGNSLLNVLILR--SNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIP 736
Query: 406 RCINNLTAMMNQENSMETDKEYDT----FTIELSILVVMKGRELAYNTMLKLVRCMDLSG 461
RC ++L+AM + S + + T F + + ++V KG E+ Y+ +L V+ MDLS
Sbjct: 737 RCFHDLSAMADFSESFSPTRGFGTSAHMFELSDNAILVKKGIEMEYSKILGFVKGMDLSC 796
Query: 462 NNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSIS 521
N + G+IPEE+T LLALQSLNLS+N G+IP +G M LES+DFS N L G IPQS++
Sbjct: 797 NFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSKIGNMAWLESLDFSMNQLDGEIPQSMT 856
Query: 522 SLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNVPIPAENEN 581
+LTFLSHLNLS NNLTG+IP TQLQ + S F GN LCGAPL K+C+ V PA E
Sbjct: 857 NLTFLSHLNLSYNNLTGRIPESTQLQLLDQSSFVGNELCGAPLHKHCSANGVIPPATVEQ 916
Query: 582 GSED-----EDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIAKL 633
D EDE W YVS GF GFW V+G LLIN W L+RI+ K+
Sbjct: 917 DGGDGYRLLEDE---WFYVSLGVGFFTGFWIVLGSLLINMPWSILLSQLLNRIVLKM 970
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143881|emb|CBI22742.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 246/645 (38%), Positives = 335/645 (51%), Gaps = 74/645 (11%)
Query: 2 KLAIALLLLELLALANIKIGYCNGSAYIGCIQSERKALLRFKQDLKDPANRLASWS-DGN 60
KL L +L L L + + C + + C + E++ALL FK L PAN+L+SWS +
Sbjct: 3 KLKAILGVLLLWFLCSTILRSCRANNLV-CNEKEKQALLSFKHALLHPANQLSSWSIKED 61
Query: 61 CCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVY 120
CC W GV C++ T RVL+L L + +L
Sbjct: 62 CCGWRGVHCSNVTARVLKLELAD--------------------------------MNLGV 89
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT-HNP 179
LDLS N N ++P +L + SL + LS + G IP LG+ L+YLDLS ++ H P
Sbjct: 90 LDLSENKI-NQEMPNWLFNLSSLASLSLSDNQFKGQIPESLGHFKYLEYLDLSSNSFHGP 148
Query: 180 ISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM--LPSLQVLKLSACSLHN 237
I S + LS L+ L+L L+ L T+M L +L L L SL
Sbjct: 149 IPTS---------IGNLSSLRELNLYYNRLNGT----LPTSMGRLSNLMALALGHDSLTG 195
Query: 238 SLPELPIANFSSLYTLDLSYNE-FDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296
++ E S+L T+ +S F N + G S L LD+ N+ G I D +
Sbjct: 196 AISEAHFTTLSNLKTVQISETSLFFN------MNGTSQLEVLDISINALSGEISDCWMHW 249
Query: 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------VLVVFDIGENG 350
SL H+++ SNN IP + L+ LSL N G + S VL + ++ +N
Sbjct: 250 QSLTHINMGSNNLSGKIPNSMGSLVGLKALSLHNNSFYGDVPSSLENCKVLGLINLSDNK 309
Query: 351 FSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINN 410
FSG IP WI E+ +++ LR+NKF+G IP ++C+L+SL +LDL+ N+ SG +P+C+NN
Sbjct: 310 FSGIIPRWIVERTTV-MVIHLRTNKFNGIIPPQICQLSSLIVLDLADNSLSGEIPKCLNN 368
Query: 411 LTAMMNQENSMETDKEYDTFTIEL-------SILVVMKGRELAYNTMLKLVRCMDLSGNN 463
+AM + D YD E S+++ +KGRE Y +LK VR +DLS NN
Sbjct: 369 FSAMAEGPIRGQYDILYDALEAEYDYESYMESLVLDIKGRESEYKEILKYVRAIDLSSNN 428
Query: 464 LSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL 523
LSG IP E+ +L LQ LNLS N L G I +G M LES+D S N LSG IPQSI++L
Sbjct: 429 LSGSIPVEIFSLSGLQLLNLSCNHLRGMISAKIGGMEYLESLDLSRNHLSGEIPQSIANL 488
Query: 524 TFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLPKNCTDQNVPIPAENENG 582
TFLS+LN+S N +GKIP TQLQ + F GN LCGAPL KNCT P
Sbjct: 489 TFLSYLNVSYNKFSGKIPSSTQLQSLDPLYFFGNAELCGAPLSKNCTKDEEPQDTNTNEE 548
Query: 583 SEDEDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLD 627
S + E+ W Y+ GFVVGFW V G L R WR+ Y LD
Sbjct: 549 SGEHPEIA-WFYIGMGTGFVVGFWGVCGALFFKRSWRHAYFRVLD 592
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350284739|gb|AEQ27741.1| receptor-like protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 237/607 (39%), Positives = 316/607 (52%), Gaps = 88/607 (14%)
Query: 106 GKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLF 165
G+I+ S+ +LK L + DLS+N+ + IP+ LG + SL +D+S +L G +G L
Sbjct: 373 GEISSSIGNLKSLRHFDLSSNSI-SGPIPMSLGNLSSLEKLDISGNQLNGTFIEVIGQLK 431
Query: 166 NLQYLDLSI----------------------------------DTHNPISFSFLYLENFS 191
L LD+S D P L L+++
Sbjct: 432 MLMDLDISYNSLEGAMSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWH 491
Query: 192 -------WLSGLSLLKHLDLTGVDLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 243
WL + LK L L+G +S T WF N+ ++ L LS L+ + +
Sbjct: 492 LGPKWPMWLRTQTQLKELSLSGTGISSTIPTWFW--NLTSQVEYLNLSRNQLYGQIQNIV 549
Query: 244 IANFSSLYTLDLSYNEFDNTL--VPSWLFGLS----------------------HLVFLD 279
FS T+DLS N+F L VP+ L L L L
Sbjct: 550 AVPFS---TVDLSSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPRKLGILH 606
Query: 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS- 338
LG NS G +PD + SL L+L +NN ++P + ++ L LR N L G +
Sbjct: 607 LGNNSLTGKVPDCWMSWQSLSFLNLENNNLTGNVPMSMGYLLYIQSLYLRNNHLYGELPH 666
Query: 339 -----SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHIL 393
+ L V D+ ENGFSG+IP WIG+ L +L LRSNKF+G IP E+C LTSL IL
Sbjct: 667 SLQNCTSLSVVDLSENGFSGSIPTWIGKSLSLLNVLILRSNKFEGDIPNEVCYLTSLQIL 726
Query: 394 DLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELS--ILVVMKGRELAYNTML 451
DL+HN SG +PRC +NL+A+ N S + L+ ++V KG E+ Y+T+L
Sbjct: 727 DLAHNKLSGMIPRCFHNLSALANFSESFSPTSYWGEVASGLTENAILVTKGIEMEYSTIL 786
Query: 452 KLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511
V+ MDLS N + G+IPEE+T LLALQSLNLS+N G+IP +G M LES+DFS N
Sbjct: 787 GFVKGMDLSCNFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSKIGNMAQLESLDFSMNQ 846
Query: 512 LSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQ 571
L G IP S++ LTFLSHLNLS NNLTG+IP TQLQ + S F GN LCGAPL KNC++
Sbjct: 847 LDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCSEN 906
Query: 572 NV-PIPAENENG----SEDEDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFL 626
V P P +G S EDE W YVS GF GFW V+G LL+N W L
Sbjct: 907 GVIPPPTVEHDGGGGYSLLEDE---WFYVSLGVGFFTGFWMVLGSLLVNMPWSILLSQLL 963
Query: 627 DRIIAKL 633
+RI+ K+
Sbjct: 964 NRIVLKM 970
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 235/590 (39%), Positives = 310/590 (52%), Gaps = 74/590 (12%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
LE D ++ G + LK L LD+SNN+ E+ V + L+H +
Sbjct: 472 LEKLDISGNQFNGTFTEVIGQLKMLTDLDISNNSLEDAVSEVSFSNLTKLKHFIAN---- 527
Query: 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS-------WLSGLSLLKHLDL-- 204
GN F L+ S D P L L+++ WL + L L L
Sbjct: 528 --------GNSFTLKT---SRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQLTRLSLSC 576
Query: 205 TGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 264
TG+ ST WF N+ ++ L LS L+ + + S +DLS N F L
Sbjct: 577 TGIS-STVPTWFW--NLTSKVRYLNLSHNQLYGQIQNIVAGPMS---VVDLSSNHFTGAL 630
Query: 265 --VPSWLFGLS----------------------HLVFLDLGFNSFGGPIPDGLQNLTSLE 300
VP+ LF L L FL LG N G +PD + L
Sbjct: 631 PIVPTSLFWLDLSNSSFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGKVPDCWMSWQYLS 690
Query: 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFDIGENGFSGN 354
L+L +NN ++P + LE L LR N L G + + L V D+GENGFSG+
Sbjct: 691 FLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVVDLGENGFSGS 750
Query: 355 IPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414
IP WIG+ L IL LRSNKF+G IP E+C LTSL ILDL+HN SG +PRC +NL+AM
Sbjct: 751 IPIWIGKSLSELQILNLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSAM 810
Query: 415 MNQENSMETDKEY--DTFTIELSI----LVVMKGRELAYNTMLKLVRCMDLSGNNLSGDI 468
+ S + + ++ LS+ ++V KGRE+ Y +LK V+ MDLS N + G+I
Sbjct: 811 ADFSESRDASVYVILNGISVPLSVTAKAILVTKGREMEYGKILKFVKFMDLSCNFMYGEI 870
Query: 469 PEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSH 528
PEE+T+LLAL+SLNLS+N G+IP +G M LES+DFS N L G IPQS+++LTFLSH
Sbjct: 871 PEELTDLLALKSLNLSNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSH 930
Query: 529 LNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNV-PIPAENENGSED-- 585
LNLS+NNLTG+IP TQLQ + S F GN LCGAPL KNC++ V P P +G
Sbjct: 931 LNLSNNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGGYN 990
Query: 586 --EDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIAKL 633
EDE W YVS GF GFW V+G LL+N W L+RI+ K+
Sbjct: 991 LLEDE---WFYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRIVLKM 1037
|
Source: Malus floribunda Species: Malus floribunda Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 636 | ||||||
| TAIR|locus:2090754 | 711 | RLP43 "receptor like protein 4 | 0.748 | 0.669 | 0.305 | 1.1e-52 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.765 | 0.546 | 0.309 | 5.9e-48 | |
| TAIR|locus:2044767 | 905 | AT2G34930 "AT2G34930" [Arabido | 0.814 | 0.572 | 0.298 | 5.2e-47 | |
| TAIR|locus:2020382 | 756 | RLP3 "AT1G17250" [Arabidopsis | 0.605 | 0.509 | 0.326 | 1.1e-46 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.858 | 0.583 | 0.305 | 1.2e-46 | |
| TAIR|locus:2825384 | 847 | RLP12 "AT1G71400" [Arabidopsis | 0.712 | 0.534 | 0.317 | 1e-45 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.772 | 0.503 | 0.285 | 1.8e-45 | |
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.754 | 0.443 | 0.293 | 2e-45 | |
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.767 | 0.505 | 0.314 | 2.1e-45 | |
| TAIR|locus:2046397 | 589 | RLP22 "receptor like protein 2 | 0.588 | 0.634 | 0.326 | 1.5e-44 |
| TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 159/521 (30%), Positives = 238/521 (45%)
Query: 126 NNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTH-------- 177
N F + Q+P +G + L ++LS G P +G L +L L+L ++
Sbjct: 179 NQF-SGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPSSI 237
Query: 178 -NPISFSFLYL--ENFXXXXXXXXXXXXXXTGVDLSTASDWFLVTNML---PSLQVLKLS 231
N + + LYL NF T +DLS+ + + + L P+L + LS
Sbjct: 238 GNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWLWTLPNLFYVNLS 297
Query: 232 ACSLHN-SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP 290
+ P P + L S N F +PS++ L L LDL N+F G IP
Sbjct: 298 YNTFIGFQRPNKPEPSMGHLLG---SNNNFTGK-IPSFICELRSLETLDLSDNNFSGLIP 353
Query: 291 DGLQNLTS-LEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVV 343
+ NL S L HL+LR NN +P H F L L + N+L G + S L V
Sbjct: 354 RCMGNLKSNLSHLNLRQNNLSGGLPK--HIFEILRSLDVGHNQLVGKLPRSLRFFSTLEV 411
Query: 344 FDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403
++ N + P W+ SN F G P L I+D+SHN+F+GT
Sbjct: 412 LNVESNRINDTFPFWL-TSLPKLQVLVLRSNAFHG--PIHEASFLKLRIIDISHNHFNGT 468
Query: 404 LPRCINNLTAMMNQENSMETDKEYDTFTIELSI-----LVVM-KGRELAYNTMLKLVRCM 457
LP ++ + +S+ TD++ S+ +V+M KG E +L + +
Sbjct: 469 LP---SDYFVKWSAMSSLGTDEDRSNANYMGSVYYQDSMVLMNKGVESELIRILTIYTAL 525
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517
D SGN G+IP+ + L L LNLS+N G IP ++G + +LES+D S N L G IP
Sbjct: 526 DFSGNKFEGEIPKSIGLLKELLVLNLSNNAFTGHIPSSMGKLTALESLDVSQNKLYGEIP 585
Query: 518 QSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLPKNCTDQNVPIP 576
Q I +L+FLS +N S N L G +P G Q S F N L G+ L ++C D + P
Sbjct: 586 QEIGNLSFLSCMNFSHNQLAGLVPGGQQFLTQPCSSFEDNLGLFGSTLEEDCRDIHTPAS 645
Query: 577 AENENGSEDEDEMGYWL-YVSTAFGFVVGF--WCVIGPLLI 614
+ E E+E + +++ A GF+ G IG +L+
Sbjct: 646 HQQYKTPETEEEDEEVISWIAAAIGFIPGIVLGLTIGYILV 686
|
|
| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 5.9e-48, Sum P(3) = 5.9e-48
Identities = 166/537 (30%), Positives = 248/537 (46%)
Query: 124 SNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQL-GNLFNLQYLDLSIDTHNPISF 182
SNN F N +P + M ++ +DLS +G +P L ++L +L LS HN S
Sbjct: 381 SNNEFLGN-MPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLS---HNRFSG 436
Query: 183 SFLYLENFXXXXXXXXXXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL 242
+ + TG T + N L L V+ LS L ++P
Sbjct: 437 PIIRKSSDETSLITLIMDNNMFTGKIPRT------LLN-LRMLSVIDLSNNLLTGTIPRW 489
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEH- 301
+ NF L L +S N + PS LF + +L LDL N G +P L++ + +
Sbjct: 490 -LGNFF-LEVLRISNNRLQGAIPPS-LFNIPYLWLLDLSGNFLSGSLP--LRSSSDYGYI 544
Query: 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFDIGENGFSGNI 355
LDL +NN SIP L RL L LR N+L G I S+ VV + EN +G I
Sbjct: 545 LDLHNNNLTGSIPDTLWYGLRL--LDLRNNKLSGNIPLFRSTPSISVVL-LRENNLTGKI 601
Query: 356 PAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNF-SGTLPRCI-NNLTA 413
P + N+ + IP+ C +T+L H+N S P + +N
Sbjct: 602 PVELCG-LSNVRMLDFAHNRLNESIPS--C-VTNLSFGSGGHSNADSDWYPASLLSNFME 657
Query: 414 MMNQ---ENSMETDKEYDTFTIELSILV--VMKGR-ELAYNTMLKLVRCMDLSGNNLSGD 467
+ + E+ + +D+ ++++ ++ V +K R +L L + +DLS N LSG+
Sbjct: 658 IYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGN 717
Query: 468 IPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527
IPEE+ +L ++SLNLS N L+G IP + +RS+ES+D S N L G IP ++ L L
Sbjct: 718 IPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLV 777
Query: 528 HLNLSDNNLTGKIPLGTQLQGFNASCFAGNNL-CGAPLPKNCTDQNVPIPAENENGSEDE 586
N+S NNL+G IP G Q F + GN L CG+P ++C + E E+ E
Sbjct: 778 VFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGGTTISSGKEYEDDDESG 837
Query: 587 --DEMGYW-----LYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIAKLGCL 636
D + W YV+ GF+V F C P R W F+DR+ LG +
Sbjct: 838 LLDIVVLWWSLGTTYVTVMMGFLV-FLCFDSPW--RRAWFCLVDTFIDRVKDVLGVI 891
|
|
| TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 5.2e-47, P = 5.2e-47
Identities = 167/560 (29%), Positives = 257/560 (45%)
Query: 31 CIQSERKALLRFKQDLKDPANRLASWSDGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDE 90
CI +ER+ALL F+ L D ++RL SWS +CC W GV+C+ T V+++ L NP +
Sbjct: 33 CISTERQALLTFRAALTDLSSRLFSWSGPDCCNWPGVLCDARTSHVVKIDLRNP----SQ 88
Query: 91 PFWLEDYDDETSKLIGKINPSXXXXXXXXXXXXSNNNFENNQIPVFLGFMGSLRHIDLSR 150
++Y + L GKI+PS S+N+F +IP F+G + SLR+++LS
Sbjct: 89 DVRSDEY--KRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSS 146
Query: 151 AELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFXXXXXXXXXXXXXXTG-VDL 209
+ +G IP LGNL L+ LDL ++ L N G V+L
Sbjct: 147 SSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNL 206
Query: 210 STASD-WFLVTNMLPSLQVLKLSACSLHNSLPELPI-ANFSSLYTLDLSYNEFDNTLVPS 267
S A + W + + +L+ L L L N P L A+ L LDLS N N+ +P+
Sbjct: 207 SGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKLLEVLDLSENSL-NSPIPN 265
Query: 268 WLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFI--SSIPTWLHKFTRLEY 325
WLFGL++L L L ++ G IP G +NL LE LDL SNN IP+ L +L++
Sbjct: 266 WLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDL-SNNLALQGEIPSVLGDLPQLKF 324
Query: 326 LSLRENRLQGMISSVL----------VVF-DIGENGFSGNIPAWIGEKXXXXXXXXXXSN 374
L L N L G I L +VF D+ N +G +P +G SN
Sbjct: 325 LDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGS-LRNLQTLDLSSN 383
Query: 375 KFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIEL 434
F G +P+ + + SL LDLS+N +GT+ + L +++ N M +T+
Sbjct: 384 SFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDL-NLMA-----NTWGG-- 435
Query: 435 SILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPE 494
V+ K + + LK +R +L +P L+ + + N G P
Sbjct: 436 ---VLQKSHFVNLRS-LKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIE-NCRIGLFPM 490
Query: 495 NVGAMRSLESIDFSGNLLSGRIPQS-ISSLTF-LSHLNLSDNNLTGKIPLGTQLQGFNAS 552
+ L + + IP S S ++ +++L L++N + G++P N
Sbjct: 491 WLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNTI 550
Query: 553 CFAGNNLCGA-PL-PKNCTD 570
+ NN G PL N T+
Sbjct: 551 DLSSNNFEGTFPLWSTNATE 570
|
|
| TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 438 (159.2 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 133/407 (32%), Positives = 188/407 (46%)
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
+L L L L +L EL + F SL LDL N F P + L + N
Sbjct: 348 NLVKLNLRLNRLEGTLSELDFSRFQSLSILDLGNNSFSGDF-PWRVHSCKSLSAMRFASN 406
Query: 284 SFGGPIPDGLQNLTSLEHLDLRSNNF--ISSIPTWLHKFTRLEYLSLRENRL-------Q 334
G I + L SL L L N I+ L L L + +N +
Sbjct: 407 KLTGQISPHVLELESLSILSLSDNKLMNITGALGILQGCRNLSTLLIGKNFYNETFPSDK 466
Query: 335 GMISSV----LVVFDIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSL 390
+ISS L +F G +G G IPAW+ K N+ G IP L L
Sbjct: 467 DLISSDGFPNLQIFASGGSGLRGEIPAWL-IKLKSLAVIDLSHNQLVGSIPGWLGTFPHL 525
Query: 391 HILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTM 450
+DLS N SG LP+ + L A+M+Q+ T++ Y + +S V ++ YN +
Sbjct: 526 FYIDLSENLLSGELPKDLFQLKALMSQKAYDATERNYLKLPVFVSPNNVTTHQQ--YNQL 583
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
L + + NNL G IP E+ L L L LSHN+L+G IP + + SLE +D S N
Sbjct: 584 FSLPPGIYIRRNNLKGSIPIEVGQLKVLHVLELSHNYLSGIIPHELSKLTSLERLDLSNN 643
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNL-CGAPLPKNC- 568
LSGRIP S++SL ++S+ N+ +N+L G IP G+Q F + F GN L CG L +C
Sbjct: 644 HLSGRIPWSLTSLHYMSYFNVVNNSLDGPIPTGSQFDTFPQANFKGNPLLCGGILLTSCK 703
Query: 569 TDQNVPIPAENENGSEDEDEMGYWLYVSTAFGFVVGF---WCVIGPL 612
+P N+ +EDE+E+ + + A GF V + WC L
Sbjct: 704 ASTKLPATTTNKADTEDEEELKFIFILGVATGFFVSYCFYWCFFARL 750
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 183/599 (30%), Positives = 278/599 (46%)
Query: 59 GNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYD--DETSKLIGKI-NPSXXXX 115
GN TW ++ N+ VL+L+ N F P + + D ++ IGK +
Sbjct: 357 GNIPTW--LLTNNPELEVLQLQ-NNSFTIFPIPTMVHNLQIFDFSANNIGKFPDKMDHAL 413
Query: 116 XXXXXXXXSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQ-LGNLFNLQYLDLSI 174
SNN F+ P +G M ++ +DLS +G +P + ++ +L LS
Sbjct: 414 PNLVRLNGSNNGFQG-YFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLS- 471
Query: 175 DTHNPISFSFLYLENFXXXXXXXXXXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234
HN S FL E TG ++ ++N L++L +S
Sbjct: 472 --HNKFSGRFLPRETNFPSLDVLRMDNNLFTG-NIGGG-----LSNST-MLRILDMSNNG 522
Query: 235 LHNSLPELPIANFSSL-YTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGL 293
L ++P + F L Y L +S N + T+ PS L G+ L FLDL N F G +P +
Sbjct: 523 LSGAIPRW-LFEFPYLDYVL-ISNNFLEGTIPPS-LLGMPFLSFLDLSGNQFSGALPSHV 579
Query: 294 QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI------SSVLVVFDIG 347
+ + ++ L +NNF IP L K ++ L LR N+L G I S+ ++ G
Sbjct: 580 DSELGI-YMFLHNNNFTGPIPDTLLKSVQI--LDLRNNKLSGSIPQFDDTQSINILLLKG 636
Query: 348 ENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRC 407
N +G+IP + + NK +G IP+ C L++L L + + +P
Sbjct: 637 NN-LTGSIPRELCD-LSNVRLLDLSDNKLNGVIPS--C-LSNLSFGRLQEDAMALNIPPS 691
Query: 408 INNLTAMMN-QENSMETDK-EYDTFTI-ELSILVVMKGRELAYNT-------MLKLVRCM 457
+ M +++ DK E D T E I K R +Y+ +L+L+ M
Sbjct: 692 FLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGM 751
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517
DLS N LSG IP E+ +LL L++LNLSHN L G IP + + +ES+D S N+L G IP
Sbjct: 752 DLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIP 811
Query: 518 QSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNL-CGAPLPKNCTDQNVPIP 576
Q +SSLT L+ ++S NNL+G IP G Q F + GN L CG P ++C + N P
Sbjct: 812 QLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCGPPTSRSC-ETNKS-P 869
Query: 577 AENENGSEDEDEMG----YWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIA 631
E +NG E+ED+ Y STA +V V+ + + WR + +D IA
Sbjct: 870 EEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIA 928
|
|
| TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 158/498 (31%), Positives = 232/498 (46%)
Query: 143 LRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFXXXXXXXXXXXX 202
L+ + L R L G IP + L NL+ LD+S HN NF
Sbjct: 353 LQDLILGRNRLHGPIPESISRLLNLEELDIS---HN----------NFTGAIPPTISKLV 399
Query: 203 XXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSS--LYTLDLSYNEF 260
+DLS + V L L + LS HNS + + LDL+ N F
Sbjct: 400 NLLHLDLSKNNLEGEVPACLWRLNTMVLS----HNSFSSFENTSQEEALIEELDLNSNSF 455
Query: 261 DNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLT-SLEHLDLRSNNFISSIPTWLHK 319
+P + LS L FLDL N F G IP ++N + S++ L+L NNF ++P K
Sbjct: 456 QGP-IPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSK 514
Query: 320 FTRLEYLSLRENRLQGMISSVLV------VFDIGENGFSGNIPAWIGEKXXXXXXXXXXS 373
T L L + N+L+G L+ + ++ N P+W+ E S
Sbjct: 515 ATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRS 573
Query: 374 NKFDGQIPAELCRL--TSLHILDLSHNNFSGTLPRCI----NNLTAMMNQENSMETD--K 425
NKF G + + SL I+D+SHNNFSGTLP ++T + + + T+ +
Sbjct: 574 NKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWR 633
Query: 426 EYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSH 485
D++ E+ + V KG ++++ + + R +D SGN ++G+IPE + L L+ LNLS
Sbjct: 634 YADSYYHEMEM--VNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSG 691
Query: 486 NFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQ 545
N IP + + LE++D S N LSG+IPQ +++L+FLS++N S N L G +P GTQ
Sbjct: 692 NAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQ 751
Query: 546 LQGFNASCFAGN-NLCGAPLPKNCTDQNVPIPAEN--ENGSEDEDEMGYWLYVSTAFGFV 602
Q S F N L G L C D P E+ SE E+ M W+ + A+G
Sbjct: 752 FQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPG 809
Query: 603 VGFWCVIGPLLI--NRRW 618
V VIG N W
Sbjct: 810 VLCGLVIGHFYTSHNHEW 827
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| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.8e-45, Sum P(2) = 1.8e-45
Identities = 150/525 (28%), Positives = 237/525 (45%)
Query: 124 SNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQL-GNLFNLQYLDLSIDTHNPISF 182
S+N F+ N +P +G M + +DLS +G +P L F+L L LS HN S
Sbjct: 462 SHNGFQGN-LPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLS---HNSFSG 517
Query: 183 SFLYLENFXXXXXXXXXXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL 242
L ++ TG ++ L T L +L + S L +
Sbjct: 518 PILPIQTRLTSLIVLRMHNNLFTG-EIGVG----LRT--LVNLSIFDASNNRLTGLISSS 570
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302
+ S L L LS N + TL PS L + HL FLDL N G +P + N +
Sbjct: 571 IPPDSSHLIMLLLSNNLLEGTLPPS-LLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKI 629
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI-----SSVLVVFDIGENGFSGNIPA 357
L +N+F +P L + + L LR N+L G I + ++ + N +G+IP
Sbjct: 630 FLHNNSFTGPLPVTLLENAYI--LDLRNNKLSGSIPQFVNTGKMITLLLRGNNLTGSIPR 687
Query: 358 WIGEKXXXXXXXXXXSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQ 417
+ + NK +G IP L L++ + + FS + + M
Sbjct: 688 KLCD-LTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEIS--FGDSLQMEFY 744
Query: 418 ENSMETDK---EYDTFTIELSILVVMKGRELAYNT-MLKLVRCMDLSGNNLSGDIPEEMT 473
++ D+ YD+ + + I K R +++ L + +DLS N LSG IP E+
Sbjct: 745 RSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELG 804
Query: 474 NLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSD 533
+L L++LNLS N L+ IP N ++ +ES+D S N+L G IP +++LT L+ N+S
Sbjct: 805 DLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSF 864
Query: 534 NNLTGKIPLGTQLQGFNASCFAGNNL-CGAPLPKNCTDQNVPIPAEN---ENGSEDEDEM 589
NNL+G IP G Q FN + + GN L CG P ++C + A+N E +D+DE
Sbjct: 865 NNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEA 924
Query: 590 GY---WLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIA 631
LY +T + + ++ + + WR + +D IA
Sbjct: 925 AIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIA 969
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| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 440 (159.9 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 156/531 (29%), Positives = 249/531 (46%)
Query: 124 SNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQ-LGNLFNLQYLDLSIDTHNPISF 182
S+N+F+ IP +G M SL+ +D+S L G +P L ++L+ L LS +N +
Sbjct: 561 SSNHFQGT-IPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLS---NNQLQG 616
Query: 183 SFLYLENFXXXXXXXXXXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL 242
F G + + + + L+ + +L +L +S LP L
Sbjct: 617 KI-----FSKHANLTGLVGLFLDGNNFTGSLEEGLLKSK--NLTLLDISDNRFSGMLP-L 668
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302
I S L L +S N+ P +L + +D+ NSF G IP + N SL L
Sbjct: 669 WIGRISRLSYLYMSGNQLKGPF-P-FLRQSPWVEVMDISHNSFSGSIPRNV-NFPSLREL 725
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI------SSVLVVFDIGENGFSGNIP 356
L++N F +P L K LE L LR N G I +S L + + N F IP
Sbjct: 726 RLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIP 785
Query: 357 AWIGEKXXXXXXXXXXSNKFDGQIPAELCRLT--------SLHIL---DLSHNNFSGTLP 405
I + N+F G IP+ +++ ++ ++ D S+ F LP
Sbjct: 786 GKICQ-LSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITF---LP 841
Query: 406 RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN-TMLKLVRCMDLSGNNL 464
C + +N ++ + + T+ + + K R AY +L+ + +DLS N L
Sbjct: 842 HC--QYGSHLNLDDGVRNGYQPKPATV---VDFLTKSRYEAYQGDILRYMHGLDLSSNEL 896
Query: 465 SGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT 524
SG+IP E+ +L ++SLNLS N L G IP+++ ++ LES+D S N L G IP +++ L
Sbjct: 897 SGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPPALADLN 956
Query: 525 FLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLPKNCTDQNVPIPAE-NENG 582
L +LN+S NNL+G+IP L F+ + GN +LCG P KNC Q VP P + +
Sbjct: 957 SLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHA 1016
Query: 583 SEDE-DEMG-----YWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLD 627
E+E +E G W Y + A ++ + L I+ RW ++ + +D
Sbjct: 1017 KEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFYRVD 1067
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| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 169/537 (31%), Positives = 253/537 (47%)
Query: 124 SNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN-LFNLQYLDLSIDTHN---- 178
S NNF+ N +P LG M ++++DLSR G +P N +++ L LS + +
Sbjct: 446 SKNNFQEN-LPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIF 504
Query: 179 PISFSF-----LYLEN--FXXXXXXXXXXXXXXTGVDLSTASDWFLVTNM---LPSLQVL 228
P S +F L+++N F +D+S + ++ + LPSL L
Sbjct: 505 PESTNFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTAL 564
Query: 229 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP 288
+S L +P + + N SSL LDLS N + P + V L L N G
Sbjct: 565 LISDNFLKGDIP-MSLFNKSSLQLLDLSANSLSGVIPPQ--HDSRNGVVLLLQDNKLSGT 621
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLV 342
IPD L L ++E LDLR+N F IP +++ + L LR N G I S +
Sbjct: 622 IPDTL--LANVEILDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQ 678
Query: 343 VFDIGENGFSGNIPAWIGEKXXXXXXXXXXSN-KFDGQIPAELCRLTSLHILDLSHNNFS 401
+ D+ N +G IP+ + + F P+++ SLH D S N
Sbjct: 679 LLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLH-QDFSSNKNG 737
Query: 402 GTLPRCINNLTAM-MNQENSMETDKEYDTFTIELSILVVMKGRELAY-NTMLKLVRCMDL 459
G + + L + M+ + + +T E+ T K R AY LKL+ MDL
Sbjct: 738 GIYFKSLLTLDPLSMDYKAATQTKIEFAT-----------KHRYDAYMGGNLKLLFGMDL 786
Query: 460 SGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQS 519
S N LSG+IP E LL L++LNLSHN L+G IP+++ +M +ES D S N L GRIP
Sbjct: 787 SENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQ 846
Query: 520 ISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNL-CGAPLPKNCTDQNVPIPAE 578
++ LT LS +S NNL+G IP G Q F+A + GN L CG P ++C + + E
Sbjct: 847 LTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSYE---E 903
Query: 579 NENGSE-DEDEMGYW-LYVSTAFGFVVGFWCVIGPLLINRRWRYKYCHFLDRIIAKL 633
+NG E DE + Y+S A +V ++ L + W + + +D I K+
Sbjct: 904 ADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFIKKV 960
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| TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 132/404 (32%), Positives = 201/404 (49%)
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
S+QVL ++ S S P P+ S+ L N F +P + + L LDL +N
Sbjct: 173 SVQVLDIALNSFKGSFPNPPV----SIINLSAWNNSFTGD-IPLSVCNRTSLDVLDLSYN 227
Query: 284 SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG-----MIS 338
+F G IP + N T + +LR N +IP + + L + N+L G +++
Sbjct: 228 NFTGSIPPCMGNFTIV---NLRKNKLEGNIPDEFYSGALTQTLDVGYNQLTGELPRSLLN 284
Query: 339 SVLVVF-DIGENGFSGNIPAWIGEKXXXXXXXXXXSNKFDGQI--PAELCRLT--SLHIL 393
+ F + N + + P W+ + SN F G + P + L L IL
Sbjct: 285 CSFIRFLSVDHNRINDSFPLWL-KALPNLKVLTLRSNSFHGPMSPPDDQSSLAFPKLQIL 343
Query: 394 DLSHNNFSGTLPR------CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAY 447
++SHN F+G+LP + +L M ++E D D F E ++ + KG +
Sbjct: 344 EISHNRFTGSLPTNYFANWSVKSLK-MYDEERLYMGDYSSDRFVYEDTLDLQYKGLYMEQ 402
Query: 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDF 507
+L +D SGN L G+IPE + L L +LNLS+N G IP + + LES+D
Sbjct: 403 GKVLTFYSAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDL 462
Query: 508 SGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNN-LCGAPLPK 566
SGN LSG IPQ + L++L+++++SDN LTGKIP GTQ+ G S F GN+ LCG PL +
Sbjct: 463 SGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEE 522
Query: 567 NCTDQNVPIPAENENGSEDEDEMGYWLYVSTAFGFVVGFWCVIG 610
+C ++ P E E E+E+E+ W + +G V F IG
Sbjct: 523 SCLREDAPSTQEPE---EEEEEILEWRAAAIGYGPGVLFGLAIG 563
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00037770001 | SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (723 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 636 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-51 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-36 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-33 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-18 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-08 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 4e-08 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-08 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 5e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 3e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 6e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 8e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 9e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.001 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.002 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 0.003 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-51
Identities = 173/568 (30%), Positives = 256/568 (45%), Gaps = 94/568 (16%)
Query: 35 ERKALLRFKQDLKDPANRLASWSDGN-CCTWAGVVCNDST--------GRVLELRLGNPF 85
E + LL FK + DP L++W+ C W G+ CN+S+ G+ + ++ +
Sbjct: 30 ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI 89
Query: 86 LHDDEPFWLEDYDDETSKLIGKINPSLLDLKH-LVYLDLSNNNF---------------- 128
P+ ++ + ++L G I + L YL+LSNNNF
Sbjct: 90 FR--LPY-IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146
Query: 129 -ENN----QIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS---------I 174
NN +IP +G SL+ +DL L G IP+ L NL +L++L L+
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206
Query: 175 DTHNPISFSFLYL--ENFSW-----LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 227
+ S ++YL N S + GL+ L HLDL +L T +PS
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL---------TGPIPS--- 254
Query: 228 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG 287
+ N +L L L N+ + PS +F L L+ LDL NS G
Sbjct: 255 ---------------SLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSG 298
Query: 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI------SSVL 341
IP+ + L +LE L L SNNF IP L RL+ L L N+ G I + L
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358
Query: 342 VVFDIGENGFSGNIPAWIGEK-LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNF 400
V D+ N +G IP + L LIL SN +G+IP L SL + L N+F
Sbjct: 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILF--SNSLEGEIPKSLGACRSLRRVRLQDNSF 416
Query: 401 SGTLPR------CINNLTAMMNQENSMETDKEYDTFTIELSILVVMK-GRELAYNTMLKL 453
SG LP + L N +++D ++++ L K L + K
Sbjct: 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR 476
Query: 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513
+ +DLS N SG +P ++ +L L L LS N L+G+IP+ + + + L S+D S N LS
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536
Query: 514 GRIPQSISSLTFLSHLNLSDNNLTGKIP 541
G+IP S S + LS L+LS N L+G+IP
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIP 564
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 4e-36
Identities = 111/335 (33%), Positives = 152/335 (45%), Gaps = 53/335 (15%)
Query: 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLT-SLEHLDL 304
N S + ++DLS + + +F L ++ ++L N GPIPD + + SL +L+L
Sbjct: 67 NSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS------SVLVVFDIGENGFSGNIPAW 358
+NNF SIP LE L L N L G I S L V D+G N G IP
Sbjct: 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183
Query: 359 IGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQE 418
+ L L L SN+ GQIP EL ++ SL + L +NN SG +P I LT++ +
Sbjct: 184 LT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH-- 240
Query: 419 NSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLAL 478
+DL NNL+G IP + NL L
Sbjct: 241 --------------------------------------LDLVYNNLTGPIPSSLGNLKNL 262
Query: 479 QSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538
Q L L N L+G IP ++ +++ L S+D S N LSG IP+ + L L L+L NN TG
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322
Query: 539 KIPLG-TQLQGFNASCFAGNNLCGAPLPKNCTDQN 572
KIP+ T L N G +PKN N
Sbjct: 323 KIPVALTSLPRLQVLQLWSNKFSGE-IPKNLGKHN 356
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-33
Identities = 110/353 (31%), Positives = 157/353 (44%), Gaps = 52/353 (14%)
Query: 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS 256
S + +DL+G ++S LP +Q + LS L +P+ SSL L+LS
Sbjct: 69 SRVVSIDLSGKNIS--GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 257 YNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTW 316
N F ++ + L L DL N G IP+ + + +SL+ LDL N + IP
Sbjct: 127 NNNFTGSIPRGSIPNLETL---DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183
Query: 317 LHKFTRLEYLSLRENRLQGMISSVLVVFD------IGENGFSGNIPAWIGEKLLRNLILR 370
L T LE+L+L N+L G I L +G N SG IP IG N L
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH-LD 242
Query: 371 LRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430
L N G IP+ L L +L L L N SG +P I +L +++
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS-------------- 288
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
+DLS N+LSG+IPE + L L+ L+L N G
Sbjct: 289 --------------------------LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322
Query: 491 KIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
KIP + ++ L+ + N SG IP+++ L+ L+LS NNLTG+IP G
Sbjct: 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-18
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 7/117 (5%)
Query: 457 MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRI 516
+ L L G IP +++ L LQS+NLS N + G IP ++G++ SLE +D S N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 517 PQSISSLTFLSHLNLSDNNLTGKIP--LGTQL---QGFNASCFAGNNLCGAPLPKNC 568
P+S+ LT L LNL+ N+L+G++P LG +L FN + AG LCG P + C
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG--LCGIPGLRAC 537
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 32/87 (36%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
L+ ++ ++LSGN++ G+IP + ++ +L+ L+LS+N G IPE++G + SL ++ +GN
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 511 LLSGRIPQSISSLTFLSH---LNLSDN 534
LSGR+P ++ L H N +DN
Sbjct: 501 SLSGRVPAALGGR--LLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 42/127 (33%), Positives = 56/127 (44%), Gaps = 25/127 (19%)
Query: 265 VPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLE 324
+P+ + L HL ++L NS G IP L ++TSLE LDL N+F SIP L + T L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 325 YLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAEL 384
L+L N L SG +PA +G +LL N A L
Sbjct: 494 ILNLNGNSL------------------SGRVPAALGGRLLHRASFNFTDN-------AGL 528
Query: 385 CRLTSLH 391
C + L
Sbjct: 529 CGIPGLR 535
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-08
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 32 IQSERKALLRFKQDL-KDPANRLASW--SDGNCCTWAGVVCN 70
+ +R ALL FK L DP+ L+SW S + C+W GV C+
Sbjct: 1 LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 473 TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF-LSHLNL 531
N + S++LS ++GKI + + +++I+ S N LSG IP I + + L +LNL
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 532 SDNNLTGKIPLGT 544
S+NN TG IP G+
Sbjct: 126 SNNNFTGSIPRGS 138
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 52/151 (34%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
L +KL G+I L K LV LDLS+N + QIP M L +DLS+ +L
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL-SGQIPASFSEMPVLSQLDLSQNQL 559
Query: 154 TGMIPHQLGNLFNLQYLDLSIDTHN------PISFSFLYLENFSWLSGLSLLKHLDLTG- 206
+G IP LGN+ +L +++S HN P + +FL + N S ++G L D T
Sbjct: 560 SGEIPKNLGNVESLVQVNIS---HNHLHGSLPSTGAFLAI-NASAVAGNIDLCGGDTTSG 615
Query: 207 -----VDLSTASDWFLVTNMLPSLQVLKLSA 232
T S WF +T L + VL L A
Sbjct: 616 LPPCKRVRKTPSWWFYITCTLGAFLVLALVA 646
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 104 LIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
L G I + L+HL ++LS N+ N IP LG + SL +DLS G IP LG
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488
Query: 164 LFNLQYLDL 172
L +L+ L+L
Sbjct: 489 LTSLRILNL 497
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 5e-06
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN 308
+L +LDLS N + GL +L LDL N+ P+ L SL LDL NN
Sbjct: 1 NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 309 F 309
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGE 361
L L + IP + K L+ ++L N ++G I L G+I +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-----------GSITSLE-- 469
Query: 362 KLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
+L L N F+G IP L +LTSL IL+L+ N+ SG +P
Sbjct: 470 ------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
L LQ + LS S+ ++P + + +SL LDLSYN F N +P L L+ L L+L
Sbjct: 441 LRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSF-NGSIPESLGQLTSLRILNLN 498
Query: 282 FNSFGGPIPDGL 293
NS G +P L
Sbjct: 499 GNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 88/327 (26%), Positives = 142/327 (43%), Gaps = 39/327 (11%)
Query: 99 DETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGS-LRHIDLSRAELTGMI 157
D + LL+L +L LDL NNN IP +G + S L+ +DLS ++ +
Sbjct: 99 DLNLNRLRSNISELLELTNLTSLDLDNNNI--TDIPPLIGLLKSNLKELDLSDNKIE-SL 155
Query: 158 PHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFL 217
P L NL NL+ LDLS N +S + LS LS L +LDL+G +S
Sbjct: 156 PSPLRNLPNLKNLDLS---FNDLS------DLPKLLSNLSNLNNLDLSGNKISDLPP--- 203
Query: 218 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277
+L +L+ L LS S+ L ++N +L L+LS N+ +P + LS+L
Sbjct: 204 EIELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSNNKL--EDLPESIGNLSNLET 259
Query: 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM- 336
LDL N L +LT+L LDL N+ +++P LE L L+ +
Sbjct: 260 LDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALE 317
Query: 337 --ISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILD 394
++S+L+ +I NG + + A + L NL ++L+
Sbjct: 318 LKLNSILLNNNILSNGETSSPEALSILESLNNL-----------WTLDNALDESNLNRYI 366
Query: 395 LSHNNFSGTLPRCINNLTAMMNQENSM 421
+ + N + ++ + +NQ
Sbjct: 367 VKNPN---AIGSLLDLVKKHVNQLLEK 390
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 350 GFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408
G G IP I + LR+L + L N G IP L +TSL +LDLS+N+F+G++P +
Sbjct: 429 GLRGFIPNDISK--LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 409 NNLTAM 414
LT++
Sbjct: 487 GQLTSL 492
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Query: 166 NLQYLDLSIDTHNPISFSFLYLENFSWLS------GLSLLKHLDLTGVDLSTASDWFLVT 219
+ LD S + N + L L S L+ L LDL +++ L+
Sbjct: 79 GISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP--LIG 136
Query: 220 NMLPSLQVLKLSACSLHNSLPEL--PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277
+ +L+ L LS N + L P+ N +L LDLS+N D + +P L LS+L
Sbjct: 137 LLKSNLKELDLS----DNKIESLPSPLRNLPNLKNLDLSFN--DLSDLPKLLSNLSNLNN 190
Query: 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI 337
LDL N +P ++ L++LE LDL SNN I + + L L L L N+L+ +
Sbjct: 191 LDLSGNKIS-DLPPEIELLSALEELDL-SNNSIIELLSSLSNLKNLSGLELSNNKLEDLP 248
Query: 338 SSV 340
S+
Sbjct: 249 ESI 251
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 6e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 478 LQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536
L+SL+LS+N L + +L+ +D SGN L+ P++ S L L L+LS NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 8e-05
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 274 HLVFLDLGFNSFGGPIPDG-LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332
+L LDL N IPDG + L +L+ LDL NN S P L L L N
Sbjct: 1 NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Query: 333 L 333
L
Sbjct: 60 L 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 70/257 (27%)
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLHKFT-RLEYLSLRENRLQGMISSVLVVFDIGENGF 351
L LT+L LDL +NN I+ IP + L+ L L +N+++
Sbjct: 112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIE----------------- 153
Query: 352 SGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINN 410
++P+ + + L NL L L N +P L L++L+ LDLS N S LP I
Sbjct: 154 --SLPSPL--RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207
Query: 411 LTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE 470
L+A+ +DLS N++ ++
Sbjct: 208 LSALEE----------------------------------------LDLSNNSII-ELLS 226
Query: 471 EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLN 530
++NL L L LS+N L +PE++G + +LE++D S N +S S+ SLT L L+
Sbjct: 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELD 283
Query: 531 LSDNNLTGKIPLGTQLQ 547
LS N+L+ +PL L
Sbjct: 284 LSGNSLSNALPLIALLL 300
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 35 ERKALLRFKQDLKDPANRLASWSDGNCCT-----WAGVVC--NDSTGR--VLELRLGNP- 84
E AL K L P R W +G+ C W+G C + + G+ + L L N
Sbjct: 373 EVSALQTLKSSLGLPL-RFG-W-NGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG 429
Query: 85 ---FLHDDEPFW--LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGF 139
F+ +D L+ + + + G I PSL + L LDLS N+F N IP LG
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-NGSIPESLGQ 488
Query: 140 MGSLRHIDLSRAELTGMIPHQLG 162
+ SLR ++L+ L+G +P LG
Sbjct: 489 LTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 54/215 (25%), Positives = 76/215 (35%), Gaps = 28/215 (13%)
Query: 142 SLRHIDLSRAELTGMIP-------HQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLS 194
SL+ + LS TG IP L LQ LDLS + + L
Sbjct: 52 SLKELCLS-LNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-----ALGPDGCGVLESLL 105
Query: 195 GLSLLKHLDLTGVDLSTASDWFLVTNML---PSLQVLKLSACSLHN----SLPELPIANF 247
S L+ L L L L + P+L+ L L L +L + AN
Sbjct: 106 RSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN- 164
Query: 248 SSLYTLDLSYNEFDNTLVPSWLFGL---SHLVFLDLGFNSF----GGPIPDGLQNLTSLE 300
L L+L+ N + + + GL +L LDL N + + L +L SLE
Sbjct: 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224
Query: 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335
L+L NN + L +SL L
Sbjct: 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 449 TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDF 507
T+ ++ M+LS N ++ ++PE + + ALQSL+L HN ++ +PEN+ +R L D
Sbjct: 238 TLPDTIQEMELSINRIT-ELPERLPS--ALQSLDLFHNKISC-LPENLPEELRYLSVYDN 293
Query: 508 SGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
S L +P I +HLN+ N+LT
Sbjct: 294 SIRTLPAHLPSGI------THLNVQSNSLT 317
|
Length = 754 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 27/134 (20%)
Query: 425 KEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLA----LQS 480
+ +T ++ ++ M+ + +DLSGN + + EE+ N++A L+
Sbjct: 11 LKLETKEDVKGVVEELE--------MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRV 62
Query: 481 LNLSHNFLAGKIPENVGAMR----------SLESIDFSGNLLSGRIPQS----ISSLTFL 526
+N S F E + L+ +D S N P+ ISS T L
Sbjct: 63 VNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDL 122
Query: 527 SHLNLSDNNLTGKI 540
HL L++N L G I
Sbjct: 123 VHLKLNNNGL-GPI 135
|
Length = 388 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 636 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.85 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.82 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.79 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.76 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.74 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.62 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.6 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.55 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.29 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.23 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.23 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.23 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.11 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.11 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.04 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.03 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.98 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.96 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.91 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.91 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.81 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.76 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.75 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.74 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.69 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.69 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.62 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.54 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.37 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.36 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.33 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.25 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.18 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.11 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.11 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.8 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.73 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.7 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.63 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.61 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.52 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.34 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.27 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.8 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.75 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.67 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.41 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.23 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.11 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.06 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.22 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.05 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.68 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.46 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.38 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.89 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 90.75 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 90.2 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 90.09 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 86.61 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 86.61 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 86.08 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 86.08 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 82.6 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-62 Score=574.73 Aligned_cols=518 Identities=32% Similarity=0.481 Sum_probs=358.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCcccccEEeCCCCCcEEEEEcCCCCCCCCCC------ccccccCCCCCcc
Q 006657 32 IQSERKALLRFKQDLKDPANRLASWS-DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEP------FWLEDYDDETSKL 104 (636)
Q Consensus 32 ~~~~~~~Ll~~k~~~~~~~~~l~~W~-~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l 104 (636)
.++|+.||++||+++.+|.+.+.+|+ ..+||.|.||+|++ .++|++|+|+++.+.+..+ ..++.+++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 35799999999999988888889998 67899999999985 5799999999988877655 3567788888888
Q ss_pred eeecCcccc-CCCCCCEEeCCCCCCCCC---------------------CCchhhcCCCCCCEEEccCCccCCCCCccCc
Q 006657 105 IGKINPSLL-DLKHLVYLDLSNNNFENN---------------------QIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162 (636)
Q Consensus 105 ~g~i~~~l~-~l~~L~~L~Ls~n~l~~~---------------------~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 162 (636)
.|.+|..+. .+++|++|+|++|.+++. .+|..++++++|++|++++|.+.+.+|..++
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 888887765 777777777777766543 1444444555555555555555545555555
Q ss_pred CCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCc
Q 006657 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL 242 (636)
Q Consensus 163 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 242 (636)
++++|++|++++|.+.... ...+.++++|++|++++|.+++. .+..++.+++|++|++++|.+++.+| .
T Consensus 186 ~l~~L~~L~L~~n~l~~~~--------p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p-~ 254 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQI--------PRELGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYNNLTGPIP-S 254 (968)
T ss_pred hCcCCCeeeccCCCCcCcC--------ChHHcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCceeccccC-h
Confidence 5555555555555443211 12245566666666666665543 12245566666666666666666565 4
Q ss_pred cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCC
Q 006657 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTR 322 (636)
Q Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 322 (636)
.++++++|+.|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 333 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence 56666666666666666665555 55666666666666666666666666666666666666666666666666666666
Q ss_pred CCEEEccCcccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEcc
Q 006657 323 LEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLS 396 (636)
Q Consensus 323 L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 396 (636)
|++|++++|.+.+.+|. .|+.|++++|.+.|.+|.++.. +.+|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus 334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 66666666666665553 4566666666666666665553 5556666666666666666666666666666666
Q ss_pred CccCccccchhhhhhhhhccccCC-----Cc------------------------ccccccc--ceeeceEEEEeecccc
Q 006657 397 HNNFSGTLPRCINNLTAMMNQENS-----ME------------------------TDKEYDT--FTIELSILVVMKGREL 445 (636)
Q Consensus 397 ~N~l~~~~p~~l~~l~~L~~~~~~-----~~------------------------~~~~~~~--~~~~~~~~~~~~~~~~ 445 (636)
+|++++.+|..+.+++.|+.++.+ +. .+..... +....-....+.+..+
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccC
Confidence 666666666555555555444321 11 1110000 0000000112344555
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 525 (636)
.....++.|+.|+|++|++++.+|..++++++|++|+|++|++++.+|..++.+++|+.|||++|+++|.+|..+..+++
T Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 66677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 526 LSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 526 L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
|+++++++|+++|.+|..+++..+....+.|| .+||.+
T Consensus 573 L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 573 LVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999 899854
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-48 Score=454.10 Aligned_cols=450 Identities=33% Similarity=0.468 Sum_probs=305.4
Q ss_pred cccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhc-CCCCCCEEEccCCccCCCCCccCcCCCCCCeEe
Q 006657 93 WLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLG-FMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLD 171 (636)
Q Consensus 93 ~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 171 (636)
.++.+++++|.+.|.+|+++..+++|++|+|++|.+++. +|..+. .+++|++|++++|++++.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 456788999999999999999999999999999999875 887654 899999999999999888775 4678888888
Q ss_pred ccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCc
Q 006657 172 LSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY 251 (636)
Q Consensus 172 Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 251 (636)
+++|.+.... + ..++++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+.+| ..++++++|+
T Consensus 147 Ls~n~~~~~~-p-------~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~ 215 (968)
T PLN00113 147 LSNNMLSGEI-P-------NDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLK 215 (968)
T ss_pred CcCCcccccC-C-------hHHhcCCCCCEEECccCcccccC--ChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCcc
Confidence 8888775321 1 12566677777777777665431 1245566666666666666666666 4566666666
Q ss_pred EEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCc
Q 006657 252 TLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331 (636)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 331 (636)
.|++++|.+.+.+| ..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 216 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 216 WIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred EEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 66666666665555 55666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccc
Q 006657 332 RLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405 (636)
Q Consensus 332 ~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 405 (636)
.+.+.+|. .|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 66655543 4555566666655555555543 5555555555555555555555555555555555555555555
Q ss_pred hhh------------------------hhhhhhccccC-----CCccccccccceeeceE--------------------
Q 006657 406 RCI------------------------NNLTAMMNQEN-----SMETDKEYDTFTIELSI-------------------- 436 (636)
Q Consensus 406 ~~l------------------------~~l~~L~~~~~-----~~~~~~~~~~~~~~~~~-------------------- 436 (636)
..+ ..+++|+.+.. .+..+.....+.....+
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 444 44444443321 11111111100000000
Q ss_pred --EE-----EeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCC
Q 006657 437 --LV-----VMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSG 509 (636)
Q Consensus 437 --~~-----~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~ 509 (636)
.. .+.+..+... ..+.|+.||+++|++++.+|..+.++++|++|+|++|++++.+|..+..+++|++|+|++
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 00 0111122211 235688999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCchhccCCCCCCeeeccCCcCcccCCCC-CccCCccccccCCCCC
Q 006657 510 NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG-TQLQGFNASCFAGNNL 559 (636)
Q Consensus 510 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l 559 (636)
|+++|.+|..+..+++|++|++++|+++|.+|.. ..+..+....+.+|.+
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 9999999999999999999999999999999964 2234444445556633
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=322.64 Aligned_cols=424 Identities=24% Similarity=0.293 Sum_probs=250.6
Q ss_pred cccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCC
Q 006657 62 CTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMG 141 (636)
Q Consensus 62 c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~ 141 (636)
|.-.-.-|+. .++.++|-+ .+.|..|...+.+++++|.+...-+..+-++++|+.+++.+|.++ .||.+.+...
T Consensus 52 c~~~lldcs~--~~lea~~~~--~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sg 125 (873)
T KOG4194|consen 52 CNTRLLDCSD--RELEAIDKS--RLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESG 125 (873)
T ss_pred CCceeeecCc--ccccccccc--ccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh--hccccccccc
Confidence 4434445542 345554433 234444444455555555555544445555556666666655555 4555555555
Q ss_pred CCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCC
Q 006657 142 SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM 221 (636)
Q Consensus 142 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 221 (636)
+|+.|+|.+|.|+..-.+++..++.|+.||||.|.+..++.+. +..-.++++|+|++|.++.... ..+..
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s--------fp~~~ni~~L~La~N~It~l~~--~~F~~ 195 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS--------FPAKVNIKKLNLASNRITTLET--GHFDS 195 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC--------CCCCCCceEEeecccccccccc--ccccc
Confidence 5566666655555444455555555556666655555544433 3333455555555555555421 12334
Q ss_pred CCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCE
Q 006657 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEH 301 (636)
Q Consensus 222 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 301 (636)
+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|++. .+.-..|.++++|+.|.|..|.+...-...|-.+.++++
T Consensus 196 lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 445555555555555 444445555555555555555553 221234555555555555555555444444555555555
Q ss_pred EEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCc
Q 006657 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIP 381 (636)
Q Consensus 302 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p 381 (636)
|+|+.|+++..--.++.++++|+.|++++|.+... .+..|- -.++|+.|+|+.|+++..-+
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-----------------h~d~Ws--ftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-----------------HIDSWS--FTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchhhhhee-----------------ecchhh--hcccceeEeccccccccCCh
Confidence 55555555544444555555555555555554411 112222 24566666666666665555
Q ss_pred cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcC
Q 006657 382 AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSG 461 (636)
Q Consensus 382 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 461 (636)
..|..+..|++|.|++|+++..-...|.. +++|+.|||++
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~----------------------------------------lssL~~LdLr~ 374 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAFVG----------------------------------------LSSLHKLDLRS 374 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHHHH----------------------------------------hhhhhhhcCcC
Confidence 55666666666666666655322223333 34488899999
Q ss_pred CccCccCCc---ccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcc
Q 006657 462 NNLSGDIPE---EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 462 N~l~g~~p~---~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
|.+++.|.+ .|..+++|+.|+|.+|++....-.+|..+..||+|||.+|.+...-|..|..+ .|++|-+..-.+-|
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 999877654 47789999999999999996666789999999999999999998889999988 89999999888888
Q ss_pred cCCCCCccCCccccccCCC--CCCCCC
Q 006657 539 KIPLGTQLQGFNASCFAGN--NLCGAP 563 (636)
Q Consensus 539 ~ip~~~~~~~~~~~~~~~n--~lc~~~ 563 (636)
.|...|..+|+....+..- .-|+.|
T Consensus 454 DCql~Wl~qWl~~~~lq~sv~a~CayP 480 (873)
T KOG4194|consen 454 DCQLKWLAQWLYRRKLQSSVIAKCAYP 480 (873)
T ss_pred eccHHHHHHHHHhcccccceeeeccCC
Confidence 8887777777665555433 457655
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=303.96 Aligned_cols=353 Identities=27% Similarity=0.266 Sum_probs=303.9
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGL 196 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l 196 (636)
.-+.||+++|.+... -+.+|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.+.++... .+..+
T Consensus 79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se--------~L~~l 148 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSE--------ELSAL 148 (873)
T ss_pred ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHH--------HHHhH
Confidence 557799999999976 6788999999999999999998 8898777777899999999988775433 37788
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCc
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLV 276 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 276 (636)
+.|+.||||.|.++.++.- .+..-.++++|+|++|.++. +....|.++.+|..|.|+.|+++ .+|+..|.++++|+
T Consensus 149 ~alrslDLSrN~is~i~~~--sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKP--SFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLE 224 (873)
T ss_pred hhhhhhhhhhchhhcccCC--CCCCCCCceEEeeccccccc-cccccccccchheeeecccCccc-ccCHHHhhhcchhh
Confidence 9999999999999988531 33444689999999999984 44478999999999999999998 88989999999999
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccc
Q 006657 277 FLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIP 356 (636)
Q Consensus 277 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip 356 (636)
.|+|..|++...---.|.++++|+.|.|..|.+.......|..+.++++|+|+.|+++. .--
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------vn~ 286 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------VNE 286 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------hhc
Confidence 99999999974445568999999999999999988778889999999999999998872 112
Q ss_pred hHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceE
Q 006657 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSI 436 (636)
Q Consensus 357 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 436 (636)
.|++. ++.|+.|+|+.|.+...-+..+...++|+.|||++|+++..-+..|..+..
T Consensus 287 g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~----------------------- 342 (873)
T KOG4194|consen 287 GWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ----------------------- 342 (873)
T ss_pred ccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-----------------------
Confidence 45554 999999999999999888899999999999999999999777777777665
Q ss_pred EEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCc---cccCCCCCCEEeCCCCCCC
Q 006657 437 LVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPE---NVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 437 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~---~~~~l~~L~~L~Ls~N~l~ 513 (636)
|++|+|++|+++..--..|..+++|++|||++|.++..|.+ .|..+++|+.|+|.+|++.
T Consensus 343 -----------------Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 343 -----------------LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred -----------------hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 78899999999977777899999999999999999876654 4778999999999999999
Q ss_pred ccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 514 GRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
...-..|..+..|++|||.+|.+-..=|.
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeeccc
Confidence 66667899999999999999998754443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=303.74 Aligned_cols=385 Identities=29% Similarity=0.414 Sum_probs=276.0
Q ss_pred ccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEecc
Q 006657 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 173 (636)
+.++...+|.++ +.|++++.+..++.|+.++|+++ .+|..++.+.+|+.|+.++|.+. .+|++++.+..|+.++..
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 344444455554 56777777777777777777777 57777777777777777777777 667777777777777777
Q ss_pred CCCCCCccccccccccc--------------ccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCC
Q 006657 174 IDTHNPISFSFLYLENF--------------SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSL 239 (636)
Q Consensus 174 ~n~~~~~~~~~~~~~~l--------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 239 (636)
+|++.+.|........+ +..-+++.|++||...|.+...|. .++.+.+|+-|+|..|.+. .+
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~---~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPP---ELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCCh---hhcchhhhHHHHhhhcccc-cC
Confidence 77776655332111000 112346778888888888777765 7788888888899888887 56
Q ss_pred CCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhC
Q 006657 240 PELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHK 319 (636)
Q Consensus 240 p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 319 (636)
| .|.++..|++|+++.|++. .+|.+....++++.+||+..|+++ ..|+++..+.+|++||+++|.++ .+|.++++
T Consensus 222 P--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 222 P--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred C--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 6 5888888999999999886 667556668999999999999998 78999999999999999999998 56778999
Q ss_pred CCCCCEEEccCccccccc-------------------------------------Cc----------cceEEEccCCCCc
Q 006657 320 FTRLEYLSLRENRLQGMI-------------------------------------SS----------VLVVFDIGENGFS 352 (636)
Q Consensus 320 l~~L~~L~L~~n~l~~~~-------------------------------------p~----------~L~~L~l~~n~l~ 352 (636)
+ .|+.|-+.+|++...- |. +.+.|+++.-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 8 8999999999874210 00 3455566655555
Q ss_pred cccchHHHHhhhc---CceEecCCCcCc-----------------------ccCccccCCCCCCCEEEccCccCccccch
Q 006657 353 GNIPAWIGEKLLR---NLILRLRSNKFD-----------------------GQIPAELCRLTSLHILDLSHNNFSGTLPR 406 (636)
Q Consensus 353 g~ip~~~~~~~~~---L~~L~L~~n~l~-----------------------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 406 (636)
.+|+.++. ..+ ....+++.|++. +.+|..++.+++|..|++++|.+. .+|.
T Consensus 376 -~VPdEVfe-a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 376 -LVPDEVFE-AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred -cCCHHHHH-HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence 56665554 222 445555555554 234444455555555555555444 4444
Q ss_pred hhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCc
Q 006657 407 CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHN 486 (636)
Q Consensus 407 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N 486 (636)
.++.+. .|+.||+|.|+|. .+|..+..+..++.+-.++|
T Consensus 453 e~~~lv----------------------------------------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 453 EMGSLV----------------------------------------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNN 491 (565)
T ss_pred hhhhhh----------------------------------------hhheecccccccc-cchHHHhhHHHHHHHHhccc
Confidence 444333 2778888888887 77887777788888877888
Q ss_pred cCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCc
Q 006657 487 FLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 487 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 537 (636)
++...-|+.+.+|.+|..|||.+|.+. .+|+.++++++|++|++++|+|.
T Consensus 492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 887555555889999999999999998 78888999999999999999987
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=299.08 Aligned_cols=354 Identities=23% Similarity=0.302 Sum_probs=180.8
Q ss_pred cce-eecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 103 KLI-GKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 103 ~l~-g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
.++ +..|..+.++++++-|.|...++. .+|+.++.+.+|++|.++.|++. .+-..++.++.|+.+++..|++....
T Consensus 18 DFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsG 94 (1255)
T KOG0444|consen 18 DFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSG 94 (1255)
T ss_pred cCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCC
Confidence 444 344555555555555555555555 45555555555555555555555 33444555555555555555554433
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
+| ..+.++..|..||||+|++...|. .+..-+++-.|+|++|++. .||...+.+++.|-.||||+|.+.
T Consensus 95 iP-------~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 95 IP-------TDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred CC-------chhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 33 114445555555555555554443 3444444555555555554 444444444455555555555543
Q ss_pred CCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCC-cccchhhhCCCCCCEEEccCcccccccCcc
Q 006657 262 NTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFI-SSIPTWLHKFTRLEYLSLRENRLQGMISSV 340 (636)
Q Consensus 262 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 340 (636)
.+| ..+..+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+++|
T Consensus 164 -~LP-PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS----------- 230 (1255)
T KOG0444|consen 164 -MLP-PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS----------- 230 (1255)
T ss_pred -hcC-HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-----------
Confidence 333 33444444555555554443221122223344444444443322 2344444444444444444
Q ss_pred ceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC
Q 006657 341 LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS 420 (636)
Q Consensus 341 L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 420 (636)
.|.+. .+|..+.. +++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|.++..++.|+.+...
T Consensus 231 -------~N~Lp-~vPecly~-l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 231 -------ENNLP-IVPECLYK-LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred -------ccCCC-cchHHHhh-hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence 44444 67777775 888888888888887 34445556677888888888887 788888777775432110
Q ss_pred CccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCC
Q 006657 421 METDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR 500 (636)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 500 (636)
... .. -..+|+-++.+..|+++..++|.+. ..|+.+..|..|+.|.|++|++. .+|+.+.-++
T Consensus 300 ~Nk--------------L~-FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 300 NNK--------------LT-FEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred cCc--------------cc-ccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 000 00 0012222333333444455555544 44555555555555555555554 4455555555
Q ss_pred CCCEEeCCCCC
Q 006657 501 SLESIDFSGNL 511 (636)
Q Consensus 501 ~L~~L~Ls~N~ 511 (636)
.|+.||+..|.
T Consensus 363 ~l~vLDlreNp 373 (1255)
T KOG0444|consen 363 DLKVLDLRENP 373 (1255)
T ss_pred CcceeeccCCc
Confidence 55555555554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=298.15 Aligned_cols=348 Identities=26% Similarity=0.360 Sum_probs=261.1
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
+-|+..+-.|+++|.++|..+|.....|++++.|.|....+. .+|+.++.|.+|++|.+++|++...- ..
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh---------GE 73 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH---------GE 73 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh---------hh
Confidence 456778889999999998889999999999999999999998 89999999999999999999886542 22
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+..++.||.+++..|++.... +|..+..+..|+.|+|++|++. ..| ..+..-+++-+|+||+|+|. +||...|.++
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsG-iP~diF~l~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL 149 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSG-IPTDIFRLKDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIE-TIPNSLFINL 149 (1255)
T ss_pred hccchhhHHHhhhccccccCC-CCchhcccccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence 778899999999999886542 2337788899999999999997 677 57888888999999999997 8887888899
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCc
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~ 352 (636)
+.|-+|||++|++. .+|+.+..+..|++|+|++|.+.-..-..+..+++|+.|.+++.+-+-
T Consensus 150 tDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl----------------- 211 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL----------------- 211 (1255)
T ss_pred HhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-----------------
Confidence 99999999999997 788889999999999999998764333344456778888888876441
Q ss_pred cccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcccccccccee
Q 006657 353 GNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTI 432 (636)
Q Consensus 353 g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 432 (636)
..+|..+-. +.+|..++++.|.+. .+|..+.++++|+.|+||+|+++ .+.-..+...+
T Consensus 212 ~N~Ptsld~-l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~------------------- 269 (1255)
T KOG0444|consen 212 DNIPTSLDD-LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWEN------------------- 269 (1255)
T ss_pred hcCCCchhh-hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhh-------------------
Confidence 267887775 999999999999998 78999999999999999999998 44333333333
Q ss_pred eceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcC-CCCccccCCCCCCEEeCCCCC
Q 006657 433 ELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG-KIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
|++|++|.|+++ .+|..+..++.|+.|.+.+|+++- .||..++.+.+|+.+..++|.
T Consensus 270 ---------------------lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 270 ---------------------LETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred ---------------------hhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 444555555555 445555555555555555554442 244445555555555555544
Q ss_pred CCccCchhccCCCCCCeeeccCCcCc
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~ 537 (636)
+. ..|..+..+..|+.|.|+.|++.
T Consensus 328 LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 328 LE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cc-cCchhhhhhHHHHHhccccccee
Confidence 44 44444444444555555544443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-34 Score=279.81 Aligned_cols=426 Identities=27% Similarity=0.363 Sum_probs=260.3
Q ss_pred cceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccc
Q 006657 103 KLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISF 182 (636)
Q Consensus 103 ~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 182 (636)
.+. .+.+.+.++..|.+|++++|++. ++|..++.+..++.|+++.|.++ .+|+.++.+.+|+.+++++|.+...+.
T Consensus 56 ~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 56 DLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred chh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc
Confidence 443 45566889999999999999998 68999999999999999999998 899999999999999999998877653
Q ss_pred ccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCC
Q 006657 183 SFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 262 (636)
Q Consensus 183 ~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 262 (636)
. ++.+..|+.++..+|+++..|. .+.++.+|..+++.+|++. ..|+..+ +++.|++||...|.+.
T Consensus 132 ~---------i~~~~~l~dl~~~~N~i~slp~---~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 132 S---------IGRLLDLEDLDATNNQISSLPE---DMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE- 196 (565)
T ss_pred h---------HHHHhhhhhhhccccccccCch---HHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-
Confidence 3 6667777777777777777654 4445555556666666555 2331222 2555555555555553
Q ss_pred CCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhh-CCCCCCEEEccCcccccccCc--
Q 006657 263 TLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLH-KFTRLEYLSLRENRLQGMISS-- 339 (636)
Q Consensus 263 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~-- 339 (636)
.+| ..++.+.+|..|++.+|++. .+| +|.+++.|++|.++.|++. .+|.... .++++..||+++|++....-+
T Consensus 197 tlP-~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 197 TLP-PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred cCC-hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH
Confidence 444 45555555555555555554 334 4555555555555555544 3333332 445555555555554422111
Q ss_pred ---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc-------------------------------------c
Q 006657 340 ---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG-------------------------------------Q 379 (636)
Q Consensus 340 ---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~-------------------------------------~ 379 (636)
+|..||+|+|.++ .+|..++. + .|+.|.+.+|.+.. .
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 2333333333333 23333332 2 33333333333210 0
Q ss_pred -Ccc---ccCCCCCCCEEEccCccCccccchhhhhhhh---hccccCC----Cccccccccc---eeeceEEEEeecccc
Q 006657 380 -IPA---ELCRLTSLHILDLSHNNFSGTLPRCINNLTA---MMNQENS----METDKEYDTF---TIELSILVVMKGREL 445 (636)
Q Consensus 380 -~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~ 445 (636)
.+. ....+.+.+.|++++-+++ .+|........ ....+.+ .++|...... ...........+-.+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~ 428 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVP 428 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccch
Confidence 000 0112223444555544444 33432211111 0000000 0011100000 000001112233445
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 525 (636)
.++..+++++.|+|++|-+. .+|.+++.+..|+.||+|+|++. .+|..+-.+..+|.+-.++|++....|+.+.++..
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 56667888999999999988 89999999999999999999998 88988888888899988999999777777999999
Q ss_pred CCeeeccCCcCcccCCCCCccCCccccccCCC
Q 006657 526 LSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN 557 (636)
Q Consensus 526 L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n 557 (636)
|++||+.+|.+....|.-+....+......||
T Consensus 507 L~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred cceeccCCCchhhCChhhccccceeEEEecCC
Confidence 99999999999866666566776666666665
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-31 Score=280.01 Aligned_cols=382 Identities=27% Similarity=0.365 Sum_probs=271.2
Q ss_pred EEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCC
Q 006657 76 VLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTG 155 (636)
Q Consensus 76 v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~ 155 (636)
..+||++++ ..+..|..+..+.+|+.|+++.|.+. ..|..+.++.+|++|.|.+|.+.
T Consensus 47 L~~l~lsnn-------------------~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~- 104 (1081)
T KOG0618|consen 47 LKSLDLSNN-------------------QISSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ- 104 (1081)
T ss_pred eEEeecccc-------------------ccccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-
Confidence 677888875 34566667777777777777777776 46677777777777777777666
Q ss_pred CCCccCcCCCCCCeEeccCCCCCCccccccccc-----------cc--------------------ccccCCCCCcE-EE
Q 006657 156 MIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLE-----------NF--------------------SWLSGLSLLKH-LD 203 (636)
Q Consensus 156 ~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~-----------~l--------------------~~l~~l~~L~~-L~ 203 (636)
..|.++..+.+|++||++.|.+...|....... .+ ........|++ |+
T Consensus 105 ~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ld 184 (1081)
T KOG0618|consen 105 SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLD 184 (1081)
T ss_pred cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeee
Confidence 667777777777777777777665543210000 00 00112223343 77
Q ss_pred ccCCCCCCCCChhhhhCCCC--------------------CCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCC
Q 006657 204 LTGVDLSTASDWFLVTNMLP--------------------SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 263 (636)
Q Consensus 204 Ls~n~l~~~~~~~~~~~~l~--------------------~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 263 (636)
|.+|.+... .+.+++ +|+.|+.+.|.++...+ -..-.+|+++++++|+++ .
T Consensus 185 Lr~N~~~~~-----dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~-~ 255 (1081)
T KOG0618|consen 185 LRYNEMEVL-----DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLS-N 255 (1081)
T ss_pred cccchhhhh-----hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc---ccccccceeeecchhhhh-c
Confidence 777776622 223333 45555555555542211 112257888888888887 5
Q ss_pred CChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc----
Q 006657 264 LVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS---- 339 (636)
Q Consensus 264 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---- 339 (636)
+| .|++.+.+|+.++..+|+++ .+|..+...++|+.|++..|.+. .+|....+++.|++|+|..|++....+.
T Consensus 256 lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 256 LP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred ch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhh
Confidence 66 88888888888888888885 77888888888888888888887 5566677788888899888888755433
Q ss_pred ---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccch-hhhhhhhhc
Q 006657 340 ---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR-CINNLTAMM 415 (636)
Q Consensus 340 ---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~ 415 (636)
.+..+..+.|.+. ..|..-...+..|+.|.+.+|.++...-+.+-+.++|+.|+|++|++. .+|. .+.++..
T Consensus 333 ~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~-- 408 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEE-- 408 (1081)
T ss_pred hhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHH--
Confidence 3455555666665 444333334678889999999999888888889999999999999998 5555 3444443
Q ss_pred cccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCcc
Q 006657 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPEN 495 (636)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 495 (636)
|+.|+||+|+++ .+|..+.++..|++|...+|++. ..| .
T Consensus 409 --------------------------------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 409 --------------------------------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred --------------------------------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 788999999999 88999999999999999999998 777 7
Q ss_pred ccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcC
Q 006657 496 VGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 536 (636)
+..+++|+.+|+|.|+++...-......++|++||+++|..
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 89999999999999999865433333348999999999973
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-29 Score=268.00 Aligned_cols=406 Identities=28% Similarity=0.371 Sum_probs=249.1
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
..-+|+.||+++|.+. .+|..+..+++|+.|+++.|.+. .+|.+.+++.+|++|.|..|.+...|.. +
T Consensus 43 ~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~---------~ 110 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPAS---------I 110 (1081)
T ss_pred heeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchh---------H
Confidence 3445889999999888 57888888889999999998887 7788888889999999998887665543 6
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
..+++|++|++++|.+...|. .+..++.++.+..++|..... ++... ++.+++..|.+.+.++ .....++
T Consensus 111 ~~lknl~~LdlS~N~f~~~Pl---~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~~l~~n~l~~~~~-~~i~~l~ 180 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGPIPL---VIEVLTAEEELAASNNEKIQR-----LGQTS-IKKLDLRLNVLGGSFL-IDIYNLT 180 (1081)
T ss_pred HhhhcccccccchhccCCCch---hHHhhhHHHHHhhhcchhhhh-----hcccc-chhhhhhhhhcccchh-cchhhhh
Confidence 788888999999998888764 344455555555555521111 11111 4455555555544444 3333333
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc----cCccceEEEccCC
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM----ISSVLVVFDIGEN 349 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~L~~L~l~~n 349 (636)
. .|+|.+|.+. . ..+.++.+|+.+....|++.... -..++|+.|+.+.|.++.. .|..++.+|++.|
T Consensus 181 ~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 181 H--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN 251 (1081)
T ss_pred e--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccccccccceeeecchh
Confidence 3 3555555544 1 12344445555555555443211 1124455555555554422 2345555555555
Q ss_pred CCccccchHHHHhhhcCceEecCCCcCcc----------------------cCccccCCCCCCCEEEccCccCccccchh
Q 006657 350 GFSGNIPAWIGEKLLRNLILRLRSNKFDG----------------------QIPAELCRLTSLHILDLSHNNFSGTLPRC 407 (636)
Q Consensus 350 ~l~g~ip~~~~~~~~~L~~L~L~~n~l~~----------------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 407 (636)
+++ .+|.|+.. +.+|+.+...+|+++. .+|......++|++|||..|++. ..|+.
T Consensus 252 ~l~-~lp~wi~~-~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~ 328 (1081)
T KOG0618|consen 252 NLS-NLPEWIGA-CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDN 328 (1081)
T ss_pred hhh-cchHHHHh-cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchH
Confidence 555 45555554 5555555555555431 45556666777778888888776 44442
Q ss_pred -hhhhhh-hccccCCC-ccc--cccccc-----eeeceEEEEeeccccccccccccccEEECcCCccCccCCc-cccccc
Q 006657 408 -INNLTA-MMNQENSM-ETD--KEYDTF-----TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE-EMTNLL 476 (636)
Q Consensus 408 -l~~l~~-L~~~~~~~-~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~-~~~~l~ 476 (636)
+.-... +..++.+. .++ ..+... .........+......-+..+++|+.|+|++|++. .+|+ .+.++.
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle 407 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE 407 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchH
Confidence 222211 22222100 000 000000 00000111233334444556788999999999998 5554 578899
Q ss_pred CCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcc-cCCCCCccCCccccccC
Q 006657 477 ALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG-KIPLGTQLQGFNASCFA 555 (636)
Q Consensus 477 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g-~ip~~~~~~~~~~~~~~ 555 (636)
.|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| ++..+++|+.+|+|.|+++- .+|.......+....+.
T Consensus 408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 408 ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeecc
Confidence 9999999999998 88899999999999999999998 667 78999999999999999974 44443333455555666
Q ss_pred CC
Q 006657 556 GN 557 (636)
Q Consensus 556 ~n 557 (636)
||
T Consensus 485 GN 486 (1081)
T KOG0618|consen 485 GN 486 (1081)
T ss_pred CC
Confidence 66
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=245.78 Aligned_cols=261 Identities=23% Similarity=0.267 Sum_probs=149.4
Q ss_pred cccCCCCCCEEeCCCCCCCC-----CCCchhhcCCC-CCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccc
Q 006657 111 SLLDLKHLVYLDLSNNNFEN-----NQIPVFLGFMG-SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSF 184 (636)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~l~~-----~~ip~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 184 (636)
++..+++|+.|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++++|++...+.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~-- 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWD-- 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccccc--
Confidence 46667777777775543211 12555555553 5777777777665 666665 45777777777776654321
Q ss_pred ccccccccccCCCCCcEEEccCCC-CCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCC
Q 006657 185 LYLENFSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 263 (636)
Q Consensus 185 ~~~~~l~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 263 (636)
.+..+++|+.|+|+++. +...| .+..+++|+.|++++|.....+| ..+.++++|+.|++++|..-+.
T Consensus 629 -------~~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 629 -------GVHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred -------ccccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcCc
Confidence 14567777777777654 33334 25567777777777776666677 5677777777777777654445
Q ss_pred CChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceE
Q 006657 264 LVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVV 343 (636)
Q Consensus 264 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~ 343 (636)
+| ..+ ++++|++|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|++|++.++..... +
T Consensus 697 Lp-~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l-~----- 763 (1153)
T PLN03210 697 LP-TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL-W----- 763 (1153)
T ss_pred cC-CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc-c-----
Confidence 55 322 5677777777777655555532 356777777777765 455443 456777776665332100 0
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccch
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR 406 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 406 (636)
+.+. .++.......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 764 -----~~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 764 -----ERVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred -----cccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 0000 11111111134555555555555555555555555555555555543334443
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=237.54 Aligned_cols=340 Identities=23% Similarity=0.208 Sum_probs=231.1
Q ss_pred hhhcCCCCCCEEEccCCc------cCCCCCccCcCCC-CCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCC
Q 006657 135 VFLGFMGSLRHIDLSRAE------LTGMIPHQLGNLF-NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGV 207 (636)
Q Consensus 135 ~~l~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n 207 (636)
..|..|++|++|.+..+. +...+|..+..++ +|+.|++.++.+...|.. + ...+|++|++.++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~---------f-~~~~L~~L~L~~s 621 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN---------F-RPENLVKLQMQGS 621 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc---------C-CccCCcEEECcCc
Confidence 457778888888886653 2334666666664 588888887766554322 2 3567788888877
Q ss_pred CCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcc
Q 006657 208 DLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG 287 (636)
Q Consensus 208 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 287 (636)
.+...+. .+..+++|+.|+|+++...+.+| .+..+++|+.|++++|.....+| ..+.++++|++|++++|...+
T Consensus 622 ~l~~L~~---~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 622 KLEKLWD---GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ccccccc---ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcC
Confidence 7766543 45667777888877766555666 36667777777777766555666 667777777777777765444
Q ss_pred cCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCc
Q 006657 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL 367 (636)
Q Consensus 288 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~ 367 (636)
.+|..+ ++++|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|+
T Consensus 696 ~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-------------------~lP~~~--~l~~L~ 750 (1153)
T PLN03210 696 ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-------------------EFPSNL--RLENLD 750 (1153)
T ss_pred ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-------------------cccccc--cccccc
Confidence 666554 6777777777777655455432 245666666666554 555544 267777
Q ss_pred eEecCCCcCc-------ccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEe
Q 006657 368 ILRLRSNKFD-------GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVM 440 (636)
Q Consensus 368 ~L~L~~n~l~-------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (636)
.|.+.++... ...+......++|+.|++++|...+.+|..++++++|+.+.......
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~---------------- 814 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN---------------- 814 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC----------------
Confidence 7777664321 11222233457899999999998889999999988887664311000
Q ss_pred eccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 441 KGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 441 ~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
-+..+... .+++|+.|++++|.....+|.. .++|++|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 00011111 4677999999998766566653 467899999999998 789899999999999999965444688888
Q ss_pred cCCCCCCeeeccCCcC
Q 006657 521 SSLTFLSHLNLSDNNL 536 (636)
Q Consensus 521 ~~l~~L~~L~ls~N~l 536 (636)
..+++|+.+++++|.-
T Consensus 890 ~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 890 SKLKHLETVDFSDCGA 905 (1153)
T ss_pred ccccCCCeeecCCCcc
Confidence 8899999999998863
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-22 Score=218.46 Aligned_cols=62 Identities=31% Similarity=0.465 Sum_probs=30.2
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++.+|..+
T Consensus 404 L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 444555555554 23432 123444555555554 445555555555555555555555444443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=216.13 Aligned_cols=267 Identities=22% Similarity=0.245 Sum_probs=174.3
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccC
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSG 195 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 195 (636)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|.. .++|++|++++|+++.+|. .
T Consensus 201 ~~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsLP~------------l 260 (788)
T PRK15387 201 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSLPV------------L 260 (788)
T ss_pred CCCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcccC------------c
Confidence 44667788888777 4676664 47788888888777 45542 4677777777777765431 1
Q ss_pred CCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC
Q 006657 196 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 196 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
.++|++|++++|.++..+.. .++|+.|++++|+++ .+|. ..++|+.|++++|+++ .+| .. ..+|
T Consensus 261 p~sL~~L~Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~-~Lp-~l---p~~L 324 (788)
T PRK15387 261 PPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA-SLP-AL---PSEL 324 (788)
T ss_pred ccccceeeccCCchhhhhhc------hhhcCEEECcCCccc-cccc----cccccceeECCCCccc-cCC-CC---cccc
Confidence 24667777777776655432 245666777777665 3441 2356666677666665 333 21 2345
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~i 355 (636)
+.|++++|++++ +|.. ..+|++|++++|++++ +|.. .++|+.|++++|+++ .+
T Consensus 325 ~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-------------------~L 377 (788)
T PRK15387 325 CKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-------------------SL 377 (788)
T ss_pred cccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-------------------cC
Confidence 666666666653 4421 1356666666666653 3322 134555555555544 45
Q ss_pred chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeece
Q 006657 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELS 435 (636)
Q Consensus 356 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~ 435 (636)
|.. ..+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|....
T Consensus 378 P~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~~-------------------------- 422 (788)
T PRK15387 378 PAL----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLPS-------------------------- 422 (788)
T ss_pred ccc----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcchh--------------------------
Confidence 542 3568899999999884 5643 357999999999998 4664321
Q ss_pred EEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccC
Q 006657 436 ILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA 498 (636)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 498 (636)
.|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+..
T Consensus 423 -----------------~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 423 -----------------GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred -----------------hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 2667999999998 78999999999999999999999988877643
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-23 Score=203.37 Aligned_cols=398 Identities=20% Similarity=0.176 Sum_probs=222.9
Q ss_pred CCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccC-CccCCCCCccCcCCCCCCeEeccCCC
Q 006657 98 DDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSR-AELTGMIPHQLGNLFNLQYLDLSIDT 176 (636)
Q Consensus 98 ~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~ 176 (636)
.+..|.++...|.+|..+++||.||||+|.|+.. -|..|..+++|..|-+.+ |+|+......|++|..|+.|.+.-|+
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 3334455544455667777777777777777765 666676677666665554 66664444456667777777776666
Q ss_pred CCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCC------------CCCCccc
Q 006657 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN------------SLPELPI 244 (636)
Q Consensus 177 ~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~p~~~~ 244 (636)
+...... .+..+++|..|.+.+|.+..++.- .+..+..++.+.+..|.+.. ..| ..+
T Consensus 152 i~Cir~~--------al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~-iet 220 (498)
T KOG4237|consen 152 INCIRQD--------ALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP-IET 220 (498)
T ss_pred hcchhHH--------HHHHhhhcchhcccchhhhhhccc--cccchhccchHhhhcCccccccccchhhhHHhhch-hhc
Confidence 5544322 255666666666666666555321 34445566666665554221 011 112
Q ss_pred cCCCCCcEEEcccCCCCCCCChhhhc-CCCCCcEEEccCCcCcccCCc-cccCCCCCCEEEccCCcCCcccchhhhCCCC
Q 006657 245 ANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPD-GLQNLTSLEHLDLRSNNFISSIPTWLHKFTR 322 (636)
Q Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 322 (636)
+......-..+.+.++. .+.+..|. .+..+..=..+.+...+..|. .|..+++|+.|++++|++++.-+.+|.+...
T Consensus 221 sgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred ccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 22222222223333332 12212221 111121111222223334443 4788999999999999999888999999999
Q ss_pred CCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc
Q 006657 323 LEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 323 L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 402 (636)
+++|.|..|++. .+...++..+..|+.|+|.+|+++..-|..|..+.+|.+|.+-.|.+--
T Consensus 300 l~eL~L~~N~l~-------------------~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 300 LQELYLTRNKLE-------------------FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhhhhcCcchHH-------------------HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 999999999887 5666666678999999999999998889999999999999998887641
Q ss_pred cc-chhhhhhhhhcc-ccC-CCccccccccceeeceEEEEeeccccccc---------ccccccc-EEECcCCccCccCC
Q 006657 403 TL-PRCINNLTAMMN-QEN-SMETDKEYDTFTIELSILVVMKGRELAYN---------TMLKLVR-CMDLSGNNLSGDIP 469 (636)
Q Consensus 403 ~~-p~~l~~l~~L~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~L~-~L~Ls~N~l~g~~p 469 (636)
.- -.+++..-.-+. ..+ .-..|.....+.++..-.-..+-..+... ..++.+. +..-|+..+. .+|
T Consensus 361 nC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp 439 (498)
T KOG4237|consen 361 NCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLP 439 (498)
T ss_pred ccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcC
Confidence 10 011111100000 000 00000000000000000000000000000 0111121 2233444433 333
Q ss_pred cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 470 EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 470 ~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
..+ -..-..|++.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|.++++|.+|-++||
T Consensus 440 ~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 322 123456788888888 77776 66778 8899999888666677888888888888887
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=208.05 Aligned_cols=265 Identities=19% Similarity=0.216 Sum_probs=149.6
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCC----CC-CCCCccccc----------------EEeCCCCCcEEEEEcCCCCC
Q 006657 28 YIGCIQSERKALLRFKQDLKDPANRLAS----WS-DGNCCTWAG----------------VVCNDSTGRVLELRLGNPFL 86 (636)
Q Consensus 28 ~~~~~~~~~~~Ll~~k~~~~~~~~~l~~----W~-~~~~c~w~g----------------v~C~~~~~~v~~L~L~~~~l 86 (636)
+.+-.++|.+.+++..+.+..| +...+ |+ +.++|.-+. |.|.+ +.|+.+..-+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p-~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~ 133 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFP-AYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQ 133 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCC-chhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Ccccccccccccc
Confidence 3455678999999999999766 33444 87 567886444 66643 5566665544211
Q ss_pred CCCC--CccccccCC-----CCCcceee----------cCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEcc
Q 006657 87 HDDE--PFWLEDYDD-----ETSKLIGK----------INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLS 149 (636)
Q Consensus 87 ~~~~--~~~l~~~~~-----~~~~l~g~----------i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~ 149 (636)
.... +-.....+. ..+.-.+. +... -..+...|+++++.++ .+|..+. ++|+.|+++
T Consensus 134 ~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~C--l~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 134 ASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDC--LKNNKTELRLKILGLT--TIPACIP--EQITTLILD 207 (754)
T ss_pred cccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhh--cccCceEEEeCCCCcC--cCCcccc--cCCcEEEec
Confidence 1100 000000000 00000000 1111 1245678888888887 4676553 578888888
Q ss_pred CCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEE
Q 006657 150 RAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229 (636)
Q Consensus 150 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 229 (636)
+|.++ .+|..+. ++|++|++++|.+..+|.. + .++|+.|++++|.+...|.. + .++|+.|+
T Consensus 208 ~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~---------l--~~~L~~L~Ls~N~L~~LP~~---l--~s~L~~L~ 268 (754)
T PRK15370 208 NNELK-SLPENLQ--GNIKTLYANSNQLTSIPAT---------L--PDTIQEMELSINRITELPER---L--PSALQSLD 268 (754)
T ss_pred CCCCC-cCChhhc--cCCCEEECCCCccccCChh---------h--hccccEEECcCCccCcCChh---H--hCCCCEEE
Confidence 88887 5666554 4788888888877654321 1 13577777777777765542 2 24677777
Q ss_pred eecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcC
Q 006657 230 LSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309 (636)
Q Consensus 230 L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 309 (636)
+++|+++ .+|. .+. ++|+.|++++|+++ .+| ..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+
T Consensus 269 Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt-~LP-~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L 337 (754)
T PRK15370 269 LFHNKIS-CLPE-NLP--EELRYLSVYDNSIR-TLP-AHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENAL 337 (754)
T ss_pred CcCCccC-cccc-ccC--CCCcEEECCCCccc-cCc-ccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcc
Confidence 7777776 4552 222 36777777777665 344 2221 356666666666663 443332 4666666666666
Q ss_pred CcccchhhhCCCCCCEEEccCcccc
Q 006657 310 ISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 310 ~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
++ +|..+. ++|+.|++++|+++
T Consensus 338 t~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 338 TS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred cc-CChhhc--CcccEEECCCCCCC
Confidence 53 444332 45556666555554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-22 Score=196.86 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=104.9
Q ss_pred ccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCC
Q 006657 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527 (636)
Q Consensus 448 ~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 527 (636)
++.+++|+.|+|++|++++.-+.+|..+..++.|.|..|++...-...|.+++.|+.|+|.+|+|+..-|..|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 45688899999999999999999999999999999999999877777899999999999999999999999999999999
Q ss_pred eeeccCCcCcccCCCCCccCCccccccCCCCCCCCC
Q 006657 528 HLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAP 563 (636)
Q Consensus 528 ~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lc~~~ 563 (636)
+|++-.|++.|.+-..|.-.|+......||.-|+.|
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence 999999999999988888788877776677667654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-19 Score=197.49 Aligned_cols=246 Identities=26% Similarity=0.403 Sum_probs=124.6
Q ss_pred CCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE
Q 006657 198 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 277 (636)
+...|+++++.++..|. .+ .++|+.|++++|.++ .+|. .+ .++|+.|++++|+++ .+| ..+. .+|+.
T Consensus 179 ~~~~L~L~~~~LtsLP~---~I--p~~L~~L~Ls~N~Lt-sLP~-~l--~~nL~~L~Ls~N~Lt-sLP-~~l~--~~L~~ 245 (754)
T PRK15370 179 NKTELRLKILGLTTIPA---CI--PEQITTLILDNNELK-SLPE-NL--QGNIKTLYANSNQLT-SIP-ATLP--DTIQE 245 (754)
T ss_pred CceEEEeCCCCcCcCCc---cc--ccCCcEEEecCCCCC-cCCh-hh--ccCCCEEECCCCccc-cCC-hhhh--ccccE
Confidence 34556666655555543 11 135666666666665 3442 22 135666666666665 444 2222 34666
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccch
Q 006657 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPA 357 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~ 357 (636)
|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|.
T Consensus 246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-------------------LP~ 300 (754)
T PRK15370 246 MELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-------------------LPA 300 (754)
T ss_pred EECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-------------------Ccc
Confidence 666666665 4454443 35666666666665 3444332 356666666665552 232
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
.+. .+|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|..+.
T Consensus 301 ~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~---------------------------- 345 (754)
T PRK15370 301 HLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP---------------------------- 345 (754)
T ss_pred cch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc----------------------------
Confidence 221 234455555555552 333222 355556666665552 333221
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+.|+.|++++|+++ .+|..+. ++|++|+|++|+++ .+|..+. .+|+.|++++|+++ .+|
T Consensus 346 --------------~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 346 --------------PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLP 404 (754)
T ss_pred --------------CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCc
Confidence 12555666666665 3444332 45666666666665 3444443 24666666666665 333
Q ss_pred hhc----cCCCCCCeeeccCCcCc
Q 006657 518 QSI----SSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 518 ~~l----~~l~~L~~L~ls~N~l~ 537 (636)
..+ ..++.+..+++.+|+++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 322 23355566666666655
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-19 Score=184.92 Aligned_cols=283 Identities=25% Similarity=0.269 Sum_probs=175.2
Q ss_pred EEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCC----CCCccccCCCCCcEEEcccCCCCC--C---CChhhhcC
Q 006657 201 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS----LPELPIANFSSLYTLDLSYNEFDN--T---LVPSWLFG 271 (636)
Q Consensus 201 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~l~~--~---~~~~~l~~ 271 (636)
.|+|..+.+++. .|...+..+++|++|+++++.++.. ++ ..+...+++++++++++.+.+ . ..+..+..
T Consensus 2 ~l~L~~~~l~~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTE-RATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCccccc-chHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 567777777643 2334455667788888888887542 23 235566778888888877652 0 01135566
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCC---CCEEEccCCcCCc----ccchhhhCC-CCCCEEEccCcccccccCccceE
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTS---LEHLDLRSNNFIS----SIPTWLHKF-TRLEYLSLRENRLQGMISSVLVV 343 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~L~~ 343 (636)
+++|++|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|++|++++|.+++...
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----- 154 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC----- 154 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-----
Confidence 777888888877776555555544444 7778887777763 222334455 666677666666552110
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcc----cCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccC
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG----QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~ 419 (636)
..++..+. .+.+|++|++++|.+++ .++..+...++|+.|++++|.+++.....+...
T Consensus 155 ---------~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-------- 216 (319)
T cd00116 155 ---------EALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-------- 216 (319)
T ss_pred ---------HHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH--------
Confidence 01222222 24578888888888774 233445566788888888888764433322211
Q ss_pred CCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCccccc-----ccCCCeEeCCCccCcC----
Q 006657 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTN-----LLALQSLNLSHNFLAG---- 490 (636)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~~---- 490 (636)
...+++|++|++++|.+++.....+.. .+.|++|++++|.+++
T Consensus 217 ----------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 217 ----------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred ----------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 112345788888888887533333322 3688888888888862
Q ss_pred CCCccccCCCCCCEEeCCCCCCCcc----CchhccCC-CCCCeeeccCCcC
Q 006657 491 KIPENVGAMRSLESIDFSGNLLSGR----IPQSISSL-TFLSHLNLSDNNL 536 (636)
Q Consensus 491 ~ip~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 536 (636)
.+...+..+++|+++|+++|.++.. +...+... +.|+++++.+|++
T Consensus 269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2344556667888888888888854 44445555 6788888888865
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-18 Score=180.12 Aligned_cols=285 Identities=24% Similarity=0.238 Sum_probs=199.5
Q ss_pred eEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCC------CCC
Q 006657 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHN------SLP 240 (636)
Q Consensus 169 ~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~------~~p 240 (636)
.|+|+.+.+...... ..+..+++|++|+++++.++.. ..++..+...+++++++++++.+.+ .++
T Consensus 2 ~l~L~~~~l~~~~~~-------~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~ 74 (319)
T cd00116 2 QLSLKGELLKTERAT-------ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL 74 (319)
T ss_pred ccccccCcccccchH-------HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH
Confidence 467777666533221 2356677899999999998764 2344466778899999999998863 122
Q ss_pred CccccCCCCCcEEEcccCCCCCCCChhhhcCCCC---CcEEEccCCcCcc----cCCccccCC-CCCCEEEccCCcCCcc
Q 006657 241 ELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH---LVFLDLGFNSFGG----PIPDGLQNL-TSLEHLDLRSNNFISS 312 (636)
Q Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~ 312 (636)
..+..+++|+.|++++|.+.+..+ ..+..+.. |++|++++|++++ .+...+..+ ++|++|++++|.+++.
T Consensus 75 -~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 75 -QGLTKGCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred -HHHHhcCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 346678899999999999975444 55555555 9999999999873 233445666 8999999999999843
Q ss_pred ----cchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc----Ccccc
Q 006657 313 ----IPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ----IPAEL 384 (636)
Q Consensus 313 ----~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~----~p~~l 384 (636)
++..+..+++|++|++++|.+++... ..++..+.. .++|+.|++++|.+++. ++..+
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGI--------------RALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHH--------------HHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHh
Confidence 34456677889999999888763200 012222222 45889999999888743 34456
Q ss_pred CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCcc
Q 006657 385 CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464 (636)
Q Consensus 385 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 464 (636)
..+++|++|++++|++++.....+...-. ...+.|+.|++++|.+
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~-----------------------------------~~~~~L~~L~l~~n~i 262 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALL-----------------------------------SPNISLLTLSLSCNDI 262 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHh-----------------------------------ccCCCceEEEccCCCC
Confidence 67889999999999988643333321100 0123489999999999
Q ss_pred Cc----cCCcccccccCCCeEeCCCccCcCC----CCccccCC-CCCCEEeCCCCCC
Q 006657 465 SG----DIPEEMTNLLALQSLNLSHNFLAGK----IPENVGAM-RSLESIDFSGNLL 512 (636)
Q Consensus 465 ~g----~~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l-~~L~~L~Ls~N~l 512 (636)
++ .+...+..+++|+++++++|.++.. +...+... +.|++|++.+|.+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 72 3345566778999999999999855 44444455 7899999998864
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-18 Score=151.66 Aligned_cols=183 Identities=26% Similarity=0.482 Sum_probs=133.0
Q ss_pred CCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCC
Q 006657 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSN 374 (636)
Q Consensus 295 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n 374 (636)
++++++.|.+++|+++ .+|..++.+.+|+.|++++|+++ .+|..+.. +++|+.|+++-|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-------------------~lp~~iss-l~klr~lnvgmn 89 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-------------------ELPTSISS-LPKLRILNVGMN 89 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-------------------hcChhhhh-chhhhheecchh
Confidence 3444555555555555 33444555555555555555555 45555543 566666666666
Q ss_pred cCcccCccccCCCCCCCEEEccCccCcc-ccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccccccccccc
Q 006657 375 KFDGQIPAELCRLTSLHILDLSHNNFSG-TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKL 453 (636)
Q Consensus 375 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (636)
++. ..|..|+.++.|+.||+++|++.. .+|..|..++.
T Consensus 90 rl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t---------------------------------------- 128 (264)
T KOG0617|consen 90 RLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT---------------------------------------- 128 (264)
T ss_pred hhh-cCccccCCCchhhhhhccccccccccCCcchhHHHH----------------------------------------
Confidence 655 678889999999999999998864 45665555554
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCC---CCCeee
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT---FLSHLN 530 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ 530 (636)
|+.|+|++|.+. .+|..++++++|+.|.+..|.+- .+|.+++.+++|+.|.+.+|+++ .+|.+++.+. +=+++.
T Consensus 129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r 205 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMR 205 (264)
T ss_pred HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHh
Confidence 667889999998 88999999999999999999998 88999999999999999999999 6777777664 335567
Q ss_pred ccCCcCcccCCC
Q 006657 531 LSDNNLTGKIPL 542 (636)
Q Consensus 531 ls~N~l~g~ip~ 542 (636)
+..|++...|..
T Consensus 206 ~E~NPwv~pIae 217 (264)
T KOG0617|consen 206 MEENPWVNPIAE 217 (264)
T ss_pred hhhCCCCChHHH
Confidence 778888765543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-17 Score=143.85 Aligned_cols=167 Identities=30% Similarity=0.468 Sum_probs=138.4
Q ss_pred ccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCC
Q 006657 244 IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRL 323 (636)
Q Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 323 (636)
+.++++.+.|.||+|.++ .+| ..+..+.+|+.|++++|+++ .+|..+..+++|+.|+++.|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 445667788888888886 556 66788888999999999987 68888999999999999999887 778889999999
Q ss_pred CEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccc
Q 006657 324 EYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403 (636)
Q Consensus 324 ~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 403 (636)
+.||+.+|++... .+|..++. +..|+-|+|++|.|. .+|..++++++|+.|.+.+|.+. .
T Consensus 105 evldltynnl~e~-----------------~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 105 EVLDLTYNNLNEN-----------------SLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred hhhhccccccccc-----------------cCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-h
Confidence 9999998887632 56666664 888999999999997 78889999999999999999987 7
Q ss_pred cchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccc
Q 006657 404 LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNL 475 (636)
Q Consensus 404 ~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l 475 (636)
+|..++.++. |++|.+.+|+++ .+|++++++
T Consensus 165 lpkeig~lt~----------------------------------------lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 165 LPKEIGDLTR----------------------------------------LRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred CcHHHHHHHH----------------------------------------HHHHhcccceee-ecChhhhhh
Confidence 8888888776 677888899988 667766654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-15 Score=166.29 Aligned_cols=117 Identities=38% Similarity=0.644 Sum_probs=103.9
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCCc--cCCccccccCCC-CCCCCCCCCCCC
Q 006657 533 DNNLTGKIPLGTQ--LQGFNASCFAGN-NLCGAPLPKNCT 569 (636)
Q Consensus 533 ~N~l~g~ip~~~~--~~~~~~~~~~~n-~lc~~~~~~~c~ 569 (636)
+|+++|.+|.... ........+.+| .+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997421 222334568888 899877655664
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=158.67 Aligned_cols=130 Identities=32% Similarity=0.493 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCCCCCCCCCCc----ccccEEeCC--CC--CcEEEEEcCCCCCCCCCCccccccCCC
Q 006657 29 IGCIQSERKALLRFKQDLKDPANRLASWSDGNCC----TWAGVVCND--ST--GRVLELRLGNPFLHDDEPFWLEDYDDE 100 (636)
Q Consensus 29 ~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~~~~~c----~w~gv~C~~--~~--~~v~~L~L~~~~l~~~~~~~l~~~~~~ 100 (636)
..+.++|..||+++|+++.++.. .+|++..|| .|.||.|+. .. .+|+.|+|+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n---------------- 428 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ---------------- 428 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCC----------------
Confidence 34567899999999999966532 489764442 799999952 22 25899999886
Q ss_pred CCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCC
Q 006657 101 TSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNP 179 (636)
Q Consensus 101 ~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~ 179 (636)
.+.|.+|++++.+++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..++++++|++|++++|.+.+
T Consensus 429 --~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 429 --GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred --CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 88899999999999999999999999986 99999999999999999999999999999999999999999998754
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-13 Score=141.51 Aligned_cols=196 Identities=30% Similarity=0.472 Sum_probs=149.2
Q ss_pred CCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCC
Q 006657 271 GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350 (636)
Q Consensus 271 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~ 350 (636)
.+..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|.+++++.|+++
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS---------------- 134 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS---------------- 134 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh----------------
Confidence 4455667788888887 78888888888888888888886 67888888888888888888887
Q ss_pred CccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccc
Q 006657 351 FSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430 (636)
Q Consensus 351 l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~ 430 (636)
.+|..++ .-.|+.|.+++|+++ .+|..++.++.|..||.+.|.+. .+|..++.+.+
T Consensus 135 ---~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s----------------- 190 (722)
T KOG0532|consen 135 ---HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS----------------- 190 (722)
T ss_pred ---cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH-----------------
Confidence 6777776 456888888888887 67888887788888888888887 67776766665
Q ss_pred eeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCC
Q 006657 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510 (636)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 510 (636)
|+.|.+..|++. .+|+++. .-.|..||+|+|+++ .||-.|.+|+.|++|-|.+|
T Consensus 191 -----------------------lr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 191 -----------------------LRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred -----------------------HHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccC
Confidence 566777778777 6677777 344778888888888 78888888888888888888
Q ss_pred CCCccCchhcc---CCCCCCeeeccCCc
Q 006657 511 LLSGRIPQSIS---SLTFLSHLNLSDNN 535 (636)
Q Consensus 511 ~l~~~~p~~l~---~l~~L~~L~ls~N~ 535 (636)
.+. ..|..+. ...-.++|+..-++
T Consensus 245 PLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 245 PLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCC-CChHHHHhccceeeeeeecchhcc
Confidence 887 4454432 33445667776664
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-11 Score=131.63 Aligned_cols=200 Identities=35% Similarity=0.531 Sum_probs=136.2
Q ss_pred cEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCC-CCCEEEccCCcCCcccchhhhCCCCCCEEEcc
Q 006657 251 YTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLT-SLEHLDLRSNNFISSIPTWLHKFTRLEYLSLR 329 (636)
Q Consensus 251 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 329 (636)
..++++.|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|.+. .+|..++.+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI--SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc--hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence 46777877764222 44556678889999998888 5666666664 8899999998887 555667888888888888
Q ss_pred CcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhh
Q 006657 330 ENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN 409 (636)
Q Consensus 330 ~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 409 (636)
+|+++ .+|..... .+.|+.|++++|++. .+|........|+++++++|++. ..+..+.
T Consensus 172 ~N~l~-------------------~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~ 229 (394)
T COG4886 172 FNDLS-------------------DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS 229 (394)
T ss_pred Cchhh-------------------hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh
Confidence 88887 56655533 677777888888777 55655555556777777777533 3333333
Q ss_pred hhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCc
Q 006657 410 NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLA 489 (636)
Q Consensus 410 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 489 (636)
++.. +..+.+.+|++. .++..++.++++++|++++|.++
T Consensus 230 ~~~~----------------------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 230 NLKN----------------------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred hccc----------------------------------------ccccccCCceee-eccchhccccccceecccccccc
Confidence 3332 455556677665 33666677777777777777777
Q ss_pred CCCCccccCCCCCCEEeCCCCCCCccCchh
Q 006657 490 GKIPENVGAMRSLESIDFSGNLLSGRIPQS 519 (636)
Q Consensus 490 ~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~ 519 (636)
.++. ++.+.+++.|++++|.++...|..
T Consensus 269 -~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 269 -SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -cccc-ccccCccCEEeccCccccccchhh
Confidence 4443 677777777777777777655544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=130.12 Aligned_cols=202 Identities=30% Similarity=0.434 Sum_probs=148.9
Q ss_pred CEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC-CCcEEEccCCcCcccCCccccCCCCCCEEEc
Q 006657 226 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS-HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304 (636)
Q Consensus 226 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 304 (636)
..+++..+.+...+. .+..++.++.|++.+|.++ .++ ......+ +|++|++++|++. .+|..++.+++|+.|++
T Consensus 96 ~~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~n~i~-~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 96 PSLDLNLNRLRSNIS--ELLELTNLTSLDLDNNNIT-DIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred ceeeccccccccCch--hhhcccceeEEecCCcccc-cCc-cccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence 467787777743333 4556678889999999887 666 5555564 8999999999887 56667888899999999
Q ss_pred cCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcccc
Q 006657 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAEL 384 (636)
Q Consensus 305 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l 384 (636)
++|++. .+|...+..++|+.|++++|+++ .+|..+.. ...|+++.+++|... ..+..+
T Consensus 171 ~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-------------------~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~ 228 (394)
T COG4886 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-------------------DLPPEIEL-LSALEELDLSNNSII-ELLSSL 228 (394)
T ss_pred CCchhh-hhhhhhhhhhhhhheeccCCccc-------------------cCchhhhh-hhhhhhhhhcCCcce-ecchhh
Confidence 999887 55655557788888888888887 67766542 556888888888644 456677
Q ss_pred CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCcc
Q 006657 385 CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464 (636)
Q Consensus 385 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 464 (636)
..+.++..+.+++|++.. .+..++++ +.+++|++++|.+
T Consensus 229 ~~~~~l~~l~l~~n~~~~-~~~~~~~l----------------------------------------~~l~~L~~s~n~i 267 (394)
T COG4886 229 SNLKNLSGLELSNNKLED-LPESIGNL----------------------------------------SNLETLDLSNNQI 267 (394)
T ss_pred hhcccccccccCCceeee-ccchhccc----------------------------------------cccceeccccccc
Confidence 788888888888888762 23333333 3378899999998
Q ss_pred CccCCcccccccCCCeEeCCCccCcCCCCcccc
Q 006657 465 SGDIPEEMTNLLALQSLNLSHNFLAGKIPENVG 497 (636)
Q Consensus 465 ~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 497 (636)
+ .++. ++.+.+++.|++++|.++...|....
T Consensus 268 ~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 268 S-SISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred c-cccc-ccccCccCEEeccCccccccchhhhc
Confidence 8 4444 88889999999999998876665443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-13 Score=137.62 Aligned_cols=195 Identities=29% Similarity=0.405 Sum_probs=165.8
Q ss_pred CCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+.--...|++.|++. ++| ..+..+..|+.+.+..|.+. .+|..++++..|+.+|++.|+++ ..|..+..++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp-~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELP-EEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCc-hHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344567899999997 777 77888888999999999997 78999999999999999999998 6777777764 8899
Q ss_pred EccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccch
Q 006657 327 SLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR 406 (636)
Q Consensus 327 ~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 406 (636)
.+++|+++ .+|..++ ....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+
T Consensus 149 i~sNNkl~-------------------~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 149 IVSNNKLT-------------------SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred EEecCccc-------------------cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 99999887 8888888 4899999999999998 68899999999999999999998 6777
Q ss_pred hhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCc
Q 006657 407 CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHN 486 (636)
Q Consensus 407 ~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N 486 (636)
.+..++ |..||+|.|+++ .||-.|.+++.|++|-|.+|
T Consensus 207 El~~Lp-----------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 207 ELCSLP-----------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred HHhCCc-----------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccC
Confidence 666443 788999999999 89999999999999999999
Q ss_pred cCcCCCCccc---cCCCCCCEEeCCCCC
Q 006657 487 FLAGKIPENV---GAMRSLESIDFSGNL 511 (636)
Q Consensus 487 ~l~~~ip~~~---~~l~~L~~L~Ls~N~ 511 (636)
.++ ..|..+ |...--++|+..-++
T Consensus 245 PLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 245 PLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCC-CChHHHHhccceeeeeeecchhcc
Confidence 998 556554 333445778888885
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-11 Score=123.84 Aligned_cols=195 Identities=21% Similarity=0.156 Sum_probs=89.4
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
..|++++.|||+.|-+............+|+|+.|+++.|.+........-..+++|+.|.++.|.++-.-....+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34444455555544444443333334455555555555555542222111223455556666666554222212334456
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc-chhhhCCCCCCEEEccCcccccccCccceEEEccCCCCc
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~ 352 (636)
+|+.|+|.+|...+........++.|++|||++|++.... -...+.++.|+.|+++.+.+...--.....+
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~-------- 294 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL-------- 294 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch--------
Confidence 6666666666422222233344556666666666654221 1234455666666666665542210000000
Q ss_pred cccchHHHHhhhcCceEecCCCcCccc-CccccCCCCCCCEEEccCccCc
Q 006657 353 GNIPAWIGEKLLRNLILRLRSNKFDGQ-IPAELCRLTSLHILDLSHNNFS 401 (636)
Q Consensus 353 g~ip~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 401 (636)
.....+++|++|++..|++... .-..+..+++|+.|.+..|.++
T Consensus 295 -----~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 295 -----DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred -----hhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 0111245666666666665310 0112344556666666666655
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-11 Score=123.30 Aligned_cols=214 Identities=26% Similarity=0.236 Sum_probs=142.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCC--CCccCcCCCCCCeEeccCCCCCCcccccccccc
Q 006657 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGM--IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLEN 189 (636)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 189 (636)
=.+++.|+...|.+..+...........|++++.|||+.|-+..- +-.-...|++|+.|+++.|++........
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---- 192 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---- 192 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence 357888999999888877332224677889999999999877643 22334578899999999998754321110
Q ss_pred cccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhh
Q 006657 190 FSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWL 269 (636)
Q Consensus 190 l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l 269 (636)
-.-+++|+.|.++.|.++ ..+....+..+|+|+.|+|+.|.... +.......++.|+.|||++|++...-.-...
T Consensus 193 ---~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~ 267 (505)
T KOG3207|consen 193 ---TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFDQGYKV 267 (505)
T ss_pred ---hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCccccccccccc
Confidence 125678888888888888 43334456678889999998885321 2223455677888888888887533222345
Q ss_pred cCCCCCcEEEccCCcCccc-CCcc-----ccCCCCCCEEEccCCcCCcc-cchhhhCCCCCCEEEccCcccc
Q 006657 270 FGLSHLVFLDLGFNSFGGP-IPDG-----LQNLTSLEHLDLRSNNFISS-IPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+.++.|+.|+++.+.+... .|+. ...+++|++|+++.|++... .-..+..+++|+.|.+..|.++
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6778888888888877643 2222 24568888888888887421 1123455667777777777765
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.7e-11 Score=112.21 Aligned_cols=209 Identities=25% Similarity=0.260 Sum_probs=145.0
Q ss_pred eecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccc
Q 006657 106 GKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFL 185 (636)
Q Consensus 106 g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 185 (636)
..+|-.+.-+++|..+.+|++.-. .|-.....-|.|+++.+.+..+. ..|. +--...+....-+.-....+
T Consensus 204 ~~l~f~l~~f~~l~~~~~s~~~~~--~i~~~~~~kptl~t~~v~~s~~~-~~~~-l~pe~~~~D~~~~E~~t~~G----- 274 (490)
T KOG1259|consen 204 NRLSFNLNAFRNLKTLKFSALSTE--NIVDIELLKPTLQTICVHNTTIQ-DVPS-LLPETILADPSGSEPSTSNG----- 274 (490)
T ss_pred cccccchHHhhhhheeeeeccchh--heeceeecCchhheeeeeccccc-cccc-ccchhhhcCccCCCCCccCC-----
Confidence 344556667788888888877644 23333334577888888777655 2221 11111111111111000010
Q ss_pred cccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCC
Q 006657 186 YLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 186 ~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (636)
.....+.-.+.|+++|||+|.++.+.. +..-.|+++.|++++|++.. + ..++.+++|+.||||+|.++ .+.
T Consensus 275 --~~~~~~dTWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~-v--~nLa~L~~L~~LDLS~N~Ls-~~~ 345 (490)
T KOG1259|consen 275 --SALVSADTWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRT-V--QNLAELPQLQLLDLSGNLLA-ECV 345 (490)
T ss_pred --ceEEecchHhhhhhccccccchhhhhh---hhhhccceeEEeccccceee-e--hhhhhcccceEeecccchhH-hhh
Confidence 111234556789999999999987754 56678999999999999973 3 34888999999999999987 555
Q ss_pred hhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc-chhhhCCCCCCEEEccCccccc
Q 006657 266 PSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 266 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
.|-.++.+++.|.|++|.+.. -..++++-+|..||+++|++.... -..++++|.|+.+.|.+|++.+
T Consensus 346 -Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 346 -GWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred -hhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 777789999999999998863 245788899999999999987322 3568899999999999999873
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-11 Score=119.34 Aligned_cols=245 Identities=21% Similarity=0.152 Sum_probs=144.7
Q ss_pred CcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCC---CCchh-------hcCCCCC
Q 006657 74 GRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENN---QIPVF-------LGFMGSL 143 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~---~ip~~-------l~~l~~L 143 (636)
..++.|+|+++.++.. -...+.+.+.+.++|+.-++|.-- +|. .+|+. +-.+++|
T Consensus 30 ~s~~~l~lsgnt~G~E--------------Aa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTE--------------AARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred CceEEEeccCCchhHH--------------HHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCce
Confidence 3588999988744311 111234455666677777776432 221 23332 3345677
Q ss_pred CEEEccCCccCCCCCccC----cCCCCCCeEeccCCCCCCcccccccc-----cccccccCCCCCcEEEccCCCCCCC--
Q 006657 144 RHIDLSRAELTGMIPHQL----GNLFNLQYLDLSIDTHNPISFSFLYL-----ENFSWLSGLSLLKHLDLTGVDLSTA-- 212 (636)
Q Consensus 144 ~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~~~~~~~~~~~~-----~~l~~l~~l~~L~~L~Ls~n~l~~~-- 212 (636)
++||||.|.+.-..++.+ ..+..|++|.|.+|.+.......+.. ..-...+.-++||++..++|.+...
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 777777777764444433 35667777777777553321111000 0112245567788888888877765
Q ss_pred CChhhhhCCCCCCCEEEeecCCCCCC---CCCccccCCCCCcEEEcccCCCCCC---CChhhhcCCCCCcEEEccCCcCc
Q 006657 213 SDWFLVTNMLPSLQVLKLSACSLHNS---LPELPIANFSSLYTLDLSYNEFDNT---LVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 213 ~~~~~~~~~l~~L~~L~L~~n~l~~~---~p~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
..+...+...+.|+.+.+++|.+... +-...+..+++|++|||..|.++.. .....+..+++|++|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 33455566678888888888877421 1113456778888888888877522 12245666778888888888776
Q ss_pred ccCCccc-----cCCCCCCEEEccCCcCCccc----chhhhCCCCCCEEEccCccc
Q 006657 287 GPIPDGL-----QNLTSLEHLDLRSNNFISSI----PTWLHKFTRLEYLSLRENRL 333 (636)
Q Consensus 287 ~~~p~~l-----~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l 333 (636)
..-...+ ...++|+.|.+.+|.++... ...+...+.|+.|+|++|.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4322222 23577888888888776322 23344567777788887776
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-11 Score=116.81 Aligned_cols=253 Identities=24% Similarity=0.258 Sum_probs=137.4
Q ss_pred ccccCCCCCCEEeCCCCCCCCC---CCchhhcCCCCCCEEEccCC---ccCCCCCccCcCCCCCCeEeccCCCCCCcccc
Q 006657 110 PSLLDLKHLVYLDLSNNNFENN---QIPVFLGFMGSLRHIDLSRA---ELTGMIPHQLGNLFNLQYLDLSIDTHNPISFS 183 (636)
Q Consensus 110 ~~l~~l~~L~~L~Ls~n~l~~~---~ip~~l~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~ 183 (636)
+.+-....++.++||+|.|... .+...+.+.++|+.-++++- +....+|+.+..+
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l------------------- 84 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML------------------- 84 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH-------------------
Confidence 3445566777777777776532 13334445556666665542 2222333322110
Q ss_pred cccccccccccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCC------------CccccCCCC
Q 006657 184 FLYLENFSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLP------------ELPIANFSS 249 (636)
Q Consensus 184 ~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p------------~~~~~~l~~ 249 (636)
.+.+..+++|++||||+|.+... +.+-..+..+..|++|+|.+|.+...-. ......-+.
T Consensus 85 ------~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 85 ------SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred ------HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 01234444555555555544322 3333344556666666666666541100 011233456
Q ss_pred CcEEEcccCCCCCCC---ChhhhcCCCCCcEEEccCCcCccc----CCccccCCCCCCEEEccCCcCCcc----cchhhh
Q 006657 250 LYTLDLSYNEFDNTL---VPSWLFGLSHLVFLDLGFNSFGGP----IPDGLQNLTSLEHLDLRSNNFISS----IPTWLH 318 (636)
Q Consensus 250 L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~ 318 (636)
|+++..++|++...- ....|...+.|+++.++.|.+... +...+..+++|+.|||.+|-++.. +...+.
T Consensus 159 Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 159 LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 777777777765221 113455667788888887766421 223456678888888888877633 234455
Q ss_pred CCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc----cCccccCCCCCCCEEE
Q 006657 319 KFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG----QIPAELCRLTSLHILD 394 (636)
Q Consensus 319 ~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ 394 (636)
.+++|++|++++|.+...-. -.+-..+....++|+++.+.+|.++. .+...+...+.|..|+
T Consensus 239 s~~~L~El~l~dcll~~~Ga--------------~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGA--------------IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred ccchheeecccccccccccH--------------HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 66777888887777652100 01222333345677778888877762 2223344577888888
Q ss_pred ccCccCc
Q 006657 395 LSHNNFS 401 (636)
Q Consensus 395 Ls~N~l~ 401 (636)
|++|++.
T Consensus 305 LngN~l~ 311 (382)
T KOG1909|consen 305 LNGNRLG 311 (382)
T ss_pred CCccccc
Confidence 8888883
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.4e-10 Score=100.80 Aligned_cols=127 Identities=28% Similarity=0.299 Sum_probs=44.5
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhC-CCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhh-cC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTN-MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWL-FG 271 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~ 271 (636)
.+..++++|+|.+|.++.+.. ++ .+.+|+.|++++|.++. ++ .+..++.|+.|++++|.++ .+. ..+ ..
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~----L~~~l~~L~~L~Ls~N~I~~-l~--~l~~L~~L~~L~L~~N~I~-~i~-~~l~~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN----LGATLDKLEVLDLSNNQITK-LE--GLPGLPRLKTLDLSNNRIS-SIS-EGLDKN 86 (175)
T ss_dssp --------------------S------TT-TT--EEE-TTS--S---T--T----TT--EEE--SS----S-C-HHHHHH
T ss_pred ccccccccccccccccccccc----hhhhhcCCCEEECCCCCCcc-cc--CccChhhhhhcccCCCCCC-ccc-cchHHh
Confidence 344456666666666665532 22 45667777777777763 33 3666777788888888776 444 333 35
Q ss_pred CCCCcEEEccCCcCcccC-CccccCCCCCCEEEccCCcCCccc---chhhhCCCCCCEEEcc
Q 006657 272 LSHLVFLDLGFNSFGGPI-PDGLQNLTSLEHLDLRSNNFISSI---PTWLHKFTRLEYLSLR 329 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~ 329 (636)
+++|++|++++|++...- -..+..+++|++|++.+|.++... ...+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 778888888888776321 134567788888888888876432 2345678888888754
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-10 Score=101.21 Aligned_cols=84 Identities=35% Similarity=0.430 Sum_probs=17.9
Q ss_pred cCCCCCCEEEccCCccCCCCCccCc-CCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChh
Q 006657 138 GFMGSLRHIDLSRAELTGMIPHQLG-NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWF 216 (636)
Q Consensus 138 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~ 216 (636)
.+..++++|+|++|.++. + +.++ .+.+|+.|++++|.+.... .+..++.|++|++++|.++....
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~----------~l~~L~~L~~L~L~~N~I~~i~~-- 81 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE----------GLPGLPRLKTLDLSNNRISSISE-- 81 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T----------T----TT--EEE--SS---S-CH--
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc----------CccChhhhhhcccCCCCCCcccc--
Confidence 344567777777777763 2 2454 4666777777777665431 14455566666666666555432
Q ss_pred hhh-CCCCCCCEEEeecCCCC
Q 006657 217 LVT-NMLPSLQVLKLSACSLH 236 (636)
Q Consensus 217 ~~~-~~l~~L~~L~L~~n~l~ 236 (636)
.+ ..+++|++|++++|++.
T Consensus 82 -~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 82 -GLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp -HHHHH-TT--EEE-TTS---
T ss_pred -chHHhCCcCCEEECcCCcCC
Confidence 11 13455555555555554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-10 Score=106.42 Aligned_cols=134 Identities=25% Similarity=0.305 Sum_probs=99.2
Q ss_pred cCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCC
Q 006657 245 ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLE 324 (636)
Q Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 324 (636)
...+.|+.+|||+|.++ .+. ....-.++++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-.++.+.+
T Consensus 281 dTWq~LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhh-hhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 34467888888888886 555 6677788888999998888732 34778888899999988887 4455666778888
Q ss_pred EEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc-CccccCCCCCCCEEEccCccCccc
Q 006657 325 YLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ-IPAELCRLTSLHILDLSHNNFSGT 403 (636)
Q Consensus 325 ~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ 403 (636)
.|.|++|.+... ..+. .+-+|..|++++|++... --..++++|.|+.+.|.+|++.+.
T Consensus 356 tL~La~N~iE~L--------------------SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETL--------------------SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhhh--------------------hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888888877621 1223 266788888888888631 234688999999999999999854
Q ss_pred c
Q 006657 404 L 404 (636)
Q Consensus 404 ~ 404 (636)
.
T Consensus 415 v 415 (490)
T KOG1259|consen 415 V 415 (490)
T ss_pred c
Confidence 3
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-09 Score=72.10 Aligned_cols=38 Identities=45% Similarity=1.076 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCC-CCCCCCCCCC-C--CCCcccccEEeC
Q 006657 33 QSERKALLRFKQDLK-DPANRLASWS-D--GNCCTWAGVVCN 70 (636)
Q Consensus 33 ~~~~~~Ll~~k~~~~-~~~~~l~~W~-~--~~~c~w~gv~C~ 70 (636)
++|++||++||+++. +|.+.+.+|+ . .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999997 5778999998 3 699999999996
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6e-10 Score=118.77 Aligned_cols=249 Identities=29% Similarity=0.295 Sum_probs=152.2
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
..+..++.+++..|.+.. +-..+..+.+|+.|++.+|++.. +...+..+++|++|++++|.+..+ ..
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i----------~~ 135 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL----------EG 135 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc----------cc
Confidence 355667777777777763 33446677888888888888873 333366778888888888877553 22
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+..++.|+.|++++|.++.... +..++.|+.+++++|.+...-+.. ...+.+++.+++..|.+. .+ ..+..+
T Consensus 136 l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i--~~~~~~ 207 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EI--EGLDLL 207 (414)
T ss_pred hhhccchhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cc--cchHHH
Confidence 5666668888888888777753 344777888888888776321101 366777777888887764 22 334445
Q ss_pred CCCcEEEccCCcCcccCCccccCCCC--CCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCC
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTS--LEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~ 350 (636)
..+..+++..|.++..-+ +..+.. |+.+++++|++. ..+..+..+.++..|++.+|++...-.
T Consensus 208 ~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~------------ 272 (414)
T KOG0531|consen 208 KKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG------------ 272 (414)
T ss_pred HHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc------------
Confidence 555556777777663322 222333 777888888776 333445666777777777777652210
Q ss_pred CccccchHHHHhhhcCceEecCCCcCcc---cCccc-cCCCCCCCEEEccCccCccccch
Q 006657 351 FSGNIPAWIGEKLLRNLILRLRSNKFDG---QIPAE-LCRLTSLHILDLSHNNFSGTLPR 406 (636)
Q Consensus 351 l~g~ip~~~~~~~~~L~~L~L~~n~l~~---~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~ 406 (636)
++ ....+..+....|.+.. ..... ....+.++.+.+..|......+.
T Consensus 273 ----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 273 ----LE-----RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred ----cc-----ccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 00 12333344444554431 11111 45567788888888877755543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-09 Score=78.49 Aligned_cols=60 Identities=33% Similarity=0.497 Sum_probs=36.3
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCC
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 512 (636)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356666666666644445566666666666666666655555566666666666666653
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.2e-09 Score=79.24 Aligned_cols=61 Identities=39% Similarity=0.537 Sum_probs=56.6
Q ss_pred cCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcC
Q 006657 476 LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 476 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 536 (636)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999977678899999999999999999988888999999999999999985
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-08 Score=115.75 Aligned_cols=59 Identities=39% Similarity=0.578 Sum_probs=26.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccC
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 174 (636)
.++.|++|||++|.--+ .+|..++.+-+||||+++++.+. .+|..+++|.+|.+|++..
T Consensus 569 ~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred hCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccc
Confidence 34444444444433221 24444444444444444444444 4444444444444444443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-09 Score=113.14 Aligned_cols=107 Identities=30% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCC
Q 006657 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSL 299 (636)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 299 (636)
..+++|+.|++.+|++.. +. ..+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++.. ..+..++.|
T Consensus 92 ~~~~~l~~l~l~~n~i~~-i~-~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK-IE-NLLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred ccccceeeeeccccchhh-cc-cchhhhhcchheeccccccccc---cchhhccchhhheeccCcchhc--cCCccchhh
Confidence 334455555555555542 11 1144555666666666665422 2244445566666666665522 234445666
Q ss_pred CEEEccCCcCCcccc-hhhhCCCCCCEEEccCcccc
Q 006657 300 EHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 300 ~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~ 334 (636)
+.+++++|++...-+ . ...+.+++.+++.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 666666666653332 1 345556666666666544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.9e-08 Score=109.02 Aligned_cols=302 Identities=23% Similarity=0.230 Sum_probs=168.4
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCC-CCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL-HNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
...+...+-+|.+...+. -...++|++|-+.+|.. ...++...|..++.|++|||++|.--+.+| ..++.+-+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhh
Confidence 445555555555544432 22345788888887752 224443447778888888888776555666 778888888
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc--------cCccceEEEcc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM--------ISSVLVVFDIG 347 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------~p~~L~~L~l~ 347 (636)
++|++++..+. .+|..++++..|.+|++..+.....+|.....+++|++|.+..-..... ..+.|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 88888888877 6788888888888888887766555666666688888887765542111 01123322222
Q ss_pred CCCCccccchHHHHhhhcC----ceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchh---------hhhhhhh
Q 006657 348 ENGFSGNIPAWIGEKLLRN----LILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRC---------INNLTAM 414 (636)
Q Consensus 348 ~n~l~g~ip~~~~~~~~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~---------l~~l~~L 414 (636)
.... .+-..+. .+..| +.+.+..+... ..+..+..+.+|+.|.+.++.+....... |.++...
T Consensus 677 ~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 677 ISSV--LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred cchh--HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 1111 0000111 02222 12333332222 34556778888999999888876322211 1111111
Q ss_pred ccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCC-CC
Q 006657 415 MNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGK-IP 493 (636)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~-ip 493 (636)
.... ......+.+....++|+.|.+..+.....+.+....+..+..+-+..+.+.+. .-
T Consensus 753 ~~~~--------------------~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~ 812 (889)
T KOG4658|consen 753 SILN--------------------CHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRML 812 (889)
T ss_pred Hhhc--------------------cccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceee
Confidence 1000 00112223333456688888887777666666666666676666666666655 33
Q ss_pred ccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 494 ENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
.+.+.++++..+.+++=. |+.+.+..|+-.+..|.
T Consensus 813 ~~l~~l~~i~~~~l~~~~--------------l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 813 CSLGGLPQLYWLPLSFLK--------------LEELIVEECPKLGKLPL 847 (889)
T ss_pred ecCCCCceeEecccCccc--------------hhheehhcCcccccCcc
Confidence 444555555444333322 55555555555555554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-09 Score=103.79 Aligned_cols=184 Identities=26% Similarity=0.202 Sum_probs=126.3
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCC-CCCccccccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT-HNPISFSFLYLENFSWLS 194 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~~l~~l~ 194 (636)
++|++||||+..++...+-..+..|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++... .. --+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~---~~----ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA---LQ----LLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH---HH----HHHH
Confidence 4699999999999876666778889999999999999999988899999999999999753 11110 00 1167
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCC--C-CCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH--N-SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
+|+.|.+|+++.+.+....--...-.--++|+.|+++++.-. . .+. .-...+++|..|||++|.--.......|.+
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHh
Confidence 889999999998877655211111122367888888876421 1 111 223567888888888775322222256777
Q ss_pred CCCCcEEEccCCcCcccCCcc---ccCCCCCCEEEccCCcC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDG---LQNLTSLEHLDLRSNNF 309 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l 309 (636)
++.|++|.++.|.. .+|.. +...+.|.+|++.++--
T Consensus 337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 88888888888753 45543 45677888888876643
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.3e-08 Score=93.17 Aligned_cols=88 Identities=23% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCCCCCEEeCCCCCCCCC-CCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENN-QIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~-~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
..++++.+||.+|.++.- .+...+.++|+|++|+++.|++...|-..-..+.+|++|-|.+..+.-... -+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~-------~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS-------TSS 141 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh-------hhh
Confidence 356677777777777532 233445667777777777777663332211345567777776653311100 022
Q ss_pred ccCCCCCcEEEccCCC
Q 006657 193 LSGLSLLKHLDLTGVD 208 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~ 208 (636)
+..++.+++|.+|.|+
T Consensus 142 l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS 157 (418)
T ss_pred hhcchhhhhhhhccch
Confidence 5566666666666663
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-09 Score=110.54 Aligned_cols=161 Identities=29% Similarity=0.318 Sum_probs=111.3
Q ss_pred CccccCCCCCCEEeCCCCCCCCCC--------Cchhh----------------cC------CCCCCEEEccCCccCCCCC
Q 006657 109 NPSLLDLKHLVYLDLSNNNFENNQ--------IPVFL----------------GF------MGSLRHIDLSRAELTGMIP 158 (636)
Q Consensus 109 ~~~l~~l~~L~~L~Ls~n~l~~~~--------ip~~l----------------~~------l~~L~~L~L~~n~l~~~~p 158 (636)
|-+|+.++.||+|.|.++.+.... +-..| +. -..|.+.+.++|++. .+-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 557889999999999999875320 00000 00 123566667777776 455
Q ss_pred ccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCC
Q 006657 159 HQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 238 (636)
Q Consensus 159 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 238 (636)
.++.-++.|+.|||++|++.... .+..+++|++|||++|.+...|.+. ...+ +|+.|.+++|.++..
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~----------~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc-~L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD----------NLRRLPKLKHLDLSYNCLRHVPQLS--MVGC-KLQLLNLRNNALTTL 247 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH----------HHHhcccccccccccchhccccccc--hhhh-hheeeeecccHHHhh
Confidence 56667788888888888876542 2677888888999988888876532 1223 388888888888732
Q ss_pred CCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCc
Q 006657 239 LPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 239 ~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
..+.++++|+.||+++|-+.+.-.-..++.+..|+.|+|.+|.+.
T Consensus 248 ---~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 ---RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ---hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 247788888888888888775433345666777888888888764
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3e-08 Score=84.17 Aligned_cols=87 Identities=25% Similarity=0.378 Sum_probs=47.0
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccC
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSD 533 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 533 (636)
.+.|+|++|+++ .+|.++..++.|+.|+++.|.+. ..|.-+..+.++..||..+|.+. .+|..+-.-+.....++.+
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence 455666666665 55555666666666666666665 44555555556666666666555 3443333333333444455
Q ss_pred CcCcccCCCC
Q 006657 534 NNLTGKIPLG 543 (636)
Q Consensus 534 N~l~g~ip~~ 543 (636)
+++.+.+|..
T Consensus 156 epl~~~~~~k 165 (177)
T KOG4579|consen 156 EPLGDETKKK 165 (177)
T ss_pred CcccccCccc
Confidence 5555555543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-08 Score=106.19 Aligned_cols=82 Identities=35% Similarity=0.395 Sum_probs=48.2
Q ss_pred ccEEECcCCccCccCCcc-cccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc-hhccCCCCCCeeec
Q 006657 454 VRCMDLSGNNLSGDIPEE-MTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP-QSISSLTFLSHLNL 531 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l 531 (636)
|+.|||+.|.++ .+|.. ...+. |+.|++++|.++.. ..+.++.+|+.||+++|-+++.-. ..+..+.+|+.|+|
T Consensus 211 LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 211 LKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred ccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 566666666665 34432 22333 77777777776632 235667777777777776664321 12445566777777
Q ss_pred cCCcCccc
Q 006657 532 SDNNLTGK 539 (636)
Q Consensus 532 s~N~l~g~ 539 (636)
.+|++.|.
T Consensus 287 eGNPl~c~ 294 (1096)
T KOG1859|consen 287 EGNPLCCA 294 (1096)
T ss_pred cCCccccC
Confidence 77776543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-07 Score=87.96 Aligned_cols=140 Identities=24% Similarity=0.199 Sum_probs=91.4
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
..++.++++||.+|.++++.++...+.++|.|+.|+++.|++...|.... ....+|++|-|.+..+.-.-....+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 35678899999999999988777788999999999999999986655211 46678999999888876544446677888
Q ss_pred CCcEEEccCCcCccc--CCccccCC-CCCCEEEccCCcCCc--ccchhhhCCCCCCEEEccCcccc
Q 006657 274 HLVFLDLGFNSFGGP--IPDGLQNL-TSLEHLDLRSNNFIS--SIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~--~p~~l~~l-~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
.+++|.++.|.+... ........ +.+++|..-.|...- ..-..-.-++++..+.+..|++.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence 899999988844311 11111111 234444444442210 00011123567777777777665
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-08 Score=93.06 Aligned_cols=158 Identities=21% Similarity=0.212 Sum_probs=104.6
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCc-CCcc-cchhhhCCCCCCEE
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN-FISS-IPTWLHKFTRLEYL 326 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L 326 (636)
.||+|||+...++..-....++.+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++.. ..--+.+++.|++|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588888888777643333456777888888888888887777778888888888888763 3321 12345678888888
Q ss_pred EccCcccccc--------cCccceEEEccCCC--CccccchHHHHhhhcCceEecCCCc-CcccCccccCCCCCCCEEEc
Q 006657 327 SLRENRLQGM--------ISSVLVVFDIGENG--FSGNIPAWIGEKLLRNLILRLRSNK-FDGQIPAELCRLTSLHILDL 395 (636)
Q Consensus 327 ~L~~n~l~~~--------~p~~L~~L~l~~n~--l~g~ip~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L 395 (636)
+++.|.+..+ +.++++.|++++.. +..+--..+...++++..|+|++|. ++...-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8888876643 34466777776542 2222223334457888888888764 44444456677788888888
Q ss_pred cCccCccccchhh
Q 006657 396 SHNNFSGTLPRCI 408 (636)
Q Consensus 396 s~N~l~~~~p~~l 408 (636)
+.|. +.+|+.+
T Consensus 346 sRCY--~i~p~~~ 356 (419)
T KOG2120|consen 346 SRCY--DIIPETL 356 (419)
T ss_pred hhhc--CCChHHe
Confidence 7774 3555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-07 Score=86.65 Aligned_cols=140 Identities=22% Similarity=0.155 Sum_probs=71.0
Q ss_pred ccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCCcc-------------ccCCCCCcEEEccc
Q 006657 193 LSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPELP-------------IANFSSLYTLDLSY 257 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-------------~~~l~~L~~L~Ls~ 257 (636)
+.+|+.|+..+||+|.+... +..-..++.-+.|++|.+++|.+. .+.... ..+-+.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 44555555555555555433 222233455566666666666553 221111 12345677777777
Q ss_pred CCCCCCCCh----hhhcCCCCCcEEEccCCcCccc-----CCccccCCCCCCEEEccCCcCCcccc----hhhhCCCCCC
Q 006657 258 NEFDNTLVP----SWLFGLSHLVFLDLGFNSFGGP-----IPDGLQNLTSLEHLDLRSNNFISSIP----TWLHKFTRLE 324 (636)
Q Consensus 258 n~l~~~~~~----~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~ 324 (636)
|++.. .+. ..+..-.+|+++.+..|.+.-. +-..+..+.+|+.||+.+|-++-... ..+...+.|+
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 76642 221 1223334677777777755411 00112345677777777776653222 2333445567
Q ss_pred EEEccCcccc
Q 006657 325 YLSLRENRLQ 334 (636)
Q Consensus 325 ~L~L~~n~l~ 334 (636)
+|.+..|-++
T Consensus 246 EL~lnDClls 255 (388)
T COG5238 246 ELRLNDCLLS 255 (388)
T ss_pred hccccchhhc
Confidence 7777666554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-07 Score=88.89 Aligned_cols=198 Identities=18% Similarity=0.149 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCC--CCc-------hhhcCCCCCCE
Q 006657 75 RVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENN--QIP-------VFLGFMGSLRH 145 (636)
Q Consensus 75 ~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~--~ip-------~~l~~l~~L~~ 145 (636)
.++.++|+++.++... ...+...+.+-++|+..+++.-..... .+| ..+-.||+|+.
T Consensus 31 ~~~evdLSGNtigtEA--------------~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 31 ELVEVDLSGNTIGTEA--------------MEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred ceeEEeccCCcccHHH--------------HHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 5778888887443211 111223344455566655554321110 122 22334666666
Q ss_pred EEccCCccCCCCCccC----cCCCCCCeEeccCCCCCCccccccc-----ccccccccCCCCCcEEEccCCCCCCCCC--
Q 006657 146 IDLSRAELTGMIPHQL----GNLFNLQYLDLSIDTHNPISFSFLY-----LENFSWLSGLSLLKHLDLTGVDLSTASD-- 214 (636)
Q Consensus 146 L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~~~~~~~~~~~-----~~~l~~l~~l~~L~~L~Ls~n~l~~~~~-- 214 (636)
.+||.|.+....|+.+ +.-+.|++|.+++|.+-......+. .........-+.|+......|++...+.
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 6666666655555433 3445566666666654322111110 0000123445666666666666654421
Q ss_pred hhhhhCCCCCCCEEEeecCCCCCC----CCCccccCCCCCcEEEcccCCCCCC---CChhhhcCCCCCcEEEccCCcCc
Q 006657 215 WFLVTNMLPSLQVLKLSACSLHNS----LPELPIANFSSLYTLDLSYNEFDNT---LVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 215 ~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
|...+..-.+|+++.+.+|.+... +....+..+.+|+.||+..|.++-. +....+..++.|++|.+..|-++
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 222233334666666666665421 0001123445566666666655421 11123334445555555555444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.6e-07 Score=77.06 Aligned_cols=56 Identities=29% Similarity=0.458 Sum_probs=29.3
Q ss_pred ccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhh
Q 006657 354 NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNL 411 (636)
Q Consensus 354 ~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 411 (636)
.+|..+...++..+.++|++|.++ .+|..+..++.|+.++++.|++. ..|+.+..+
T Consensus 67 ~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L 122 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPL 122 (177)
T ss_pred hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHH
Confidence 444444443445555555555555 45555556666666666666655 344444333
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.5e-05 Score=54.99 Aligned_cols=35 Identities=31% Similarity=0.622 Sum_probs=14.2
Q ss_pred CCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 478 LQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 478 L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.2e-05 Score=53.28 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=17.5
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT 154 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~ 154 (636)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 24444555555555555555544
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=75.03 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=33.3
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~ 350 (636)
+.+++.|++++|.++ .+|. -.++|++|.++++.-...+|..+. ++|++|++++|.....+|..|+.|+++.+.
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~ 123 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKGSA 123 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCCCC
Confidence 344555555555444 2331 123455555554332233443331 355566666552223445555555554443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00023 Score=73.53 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=41.9
Q ss_pred cCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCC
Q 006657 294 QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRS 373 (636)
Q Consensus 294 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~ 373 (636)
..+.++++|++++|.++ .+|. + -++|++|.++++.- + ..+|..+ ..+|+.|.+++
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~n-----------------L-tsLP~~L---P~nLe~L~Ls~ 103 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNN-----------------L-TTLPGSI---PEGLEKLTVCH 103 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCC-----------------c-ccCCchh---hhhhhheEccC
Confidence 34577888888888665 4451 1 23577777766432 1 1444433 24667777777
Q ss_pred CcCcccCccccCCCCCCCEEEccCccC
Q 006657 374 NKFDGQIPAELCRLTSLHILDLSHNNF 400 (636)
Q Consensus 374 n~l~~~~p~~l~~l~~L~~L~Ls~N~l 400 (636)
|.....+|. +|+.|+++.+..
T Consensus 104 Cs~L~sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 104 CPEISGLPE------SVRSLEIKGSAT 124 (426)
T ss_pred ccccccccc------ccceEEeCCCCC
Confidence 632223443 356666665543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=1.9e-05 Score=88.36 Aligned_cols=62 Identities=26% Similarity=0.393 Sum_probs=25.5
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 259 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~ 259 (636)
.++++|+.||+|+.+++... .++++++|++|.+.+=.+.....-..+.++++|+.||+|...
T Consensus 170 ~sFpNL~sLDIS~TnI~nl~----GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNLS----GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCccceeecCCCCccCcH----HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 34444444444444444331 344444444444444333321111123444555555554443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=2.8e-05 Score=86.92 Aligned_cols=154 Identities=22% Similarity=0.240 Sum_probs=84.8
Q ss_pred CCCCEEeCCCCCCCCCCCchhhc-CCCCCCEEEccCCccCCC-CCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLG-FMGSLRHIDLSRAELTGM-IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
.+|++||+++.......=|..++ .+|+|+.|.+++-.+... .-....++++|..||+|+.++... ..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HHH
Confidence 46667777665532222233333 366777777766555322 222234566777777776655332 235
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCC--CC---ccccCCCCCcEEEcccCCCCCCCChhh
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSL--PE---LPIANFSSLYTLDLSYNEFDNTLVPSW 268 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (636)
+++++|+.|.+.+-.+.....+ ..+.++++|+.||+|.......- .. .--..+|+|+.||.|++.+.+.+....
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred hccccHHHHhccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 6667777776666666654432 23455777777777665443211 00 112346788888888887776555444
Q ss_pred hcCCCCCcEEEc
Q 006657 269 LFGLSHLVFLDL 280 (636)
Q Consensus 269 l~~l~~L~~L~L 280 (636)
+..-++|+.+..
T Consensus 271 l~sH~~L~~i~~ 282 (699)
T KOG3665|consen 271 LNSHPNLQQIAA 282 (699)
T ss_pred HHhCccHhhhhh
Confidence 444555555543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00025 Score=64.85 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccC
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSG 195 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 195 (636)
.....+||++|.+-. + ..|..+++|.+|.+.+|+|+..-|.--.-+++|+.|.+.+|++... .++..+..
T Consensus 42 d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-------~dl~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-------GDLDPLAS 111 (233)
T ss_pred cccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-------hhcchhcc
Confidence 355667777777652 1 2355677777777777777744443333456677777777665432 22233455
Q ss_pred CCCCcEEEccCCCCCCC
Q 006657 196 LSLLKHLDLTGVDLSTA 212 (636)
Q Consensus 196 l~~L~~L~Ls~n~l~~~ 212 (636)
+++|++|.+-+|..+..
T Consensus 112 ~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHK 128 (233)
T ss_pred CCccceeeecCCchhcc
Confidence 55555555555544433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00014 Score=69.39 Aligned_cols=114 Identities=23% Similarity=0.248 Sum_probs=68.8
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCC--ccCCCCCccCcCCCCCCeEeccCCCCCCcccccc
Q 006657 108 INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRA--ELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFL 185 (636)
Q Consensus 108 i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 185 (636)
+..-.-.+..|+.|++.+..++.. ..+-.+++|++|.++.| ++++.++.....+++|++|+++.|++...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l----- 106 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL----- 106 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-----
Confidence 444444555666666666665522 23445788888888888 66666666666778888888888876542
Q ss_pred cccccccccCCCCCcEEEccCCCCCCCCChh-hhhCCCCCCCEEEee
Q 006657 186 YLENFSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVLKLS 231 (636)
Q Consensus 186 ~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~l~~L~~L~L~ 231 (636)
..+..+..+.+|..|++.+|..+.....- ..+..+++|++|+-.
T Consensus 107 --stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 107 --STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred --cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 22333566677777777777655542211 123345555555443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0021 Score=59.03 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=15.5
Q ss_pred cCCCCCCEEEccCCcCCccc---chhhhCCCCCCEEEccC
Q 006657 294 QNLTSLEHLDLRSNNFISSI---PTWLHKFTRLEYLSLRE 330 (636)
Q Consensus 294 ~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~ 330 (636)
..+++|++|.+-+|..+..- --.+..+++|+.||.++
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 34444444444444443111 01233445555555544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0012 Score=63.13 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=18.2
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 236 (636)
..+++|++|.++.|.+.....+......+|+|++|++++|++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3444555555555533322222222333355555555555543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=5.4e-05 Score=76.35 Aligned_cols=267 Identities=19% Similarity=0.116 Sum_probs=141.6
Q ss_pred cCCCCCCEEeCCCCC-CCCCCCchhhcCCCCCCEEEccCC-ccCCCCCccC-cCCCCCCeEeccCCCCCCcccccccccc
Q 006657 113 LDLKHLVYLDLSNNN-FENNQIPVFLGFMGSLRHIDLSRA-ELTGMIPHQL-GNLFNLQYLDLSIDTHNPISFSFLYLEN 189 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~-l~~~~ip~~l~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 189 (636)
.+++++++|++.++. +++...-..-..+++|++|++..| .++...-..+ ..+++|++++++++.-... ..
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~-------~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG-------NG 233 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc-------Cc
Confidence 467777777777765 333222233345778888888774 4443333322 3577888888887643221 11
Q ss_pred c-ccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCC-ccccCCCCCcEEEcccCCCCCCCChh
Q 006657 190 F-SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEFDNTLVPS 267 (636)
Q Consensus 190 l-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (636)
+ ....+++.++.+.+.++.-.+...+...-+.++.+..+++..|..-..... ..-..+..|+.|+.++....+..+-.
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 1 113455556666555543333222222224455566666656532211110 11124567888888776543222212
Q ss_pred hh-cCCCCCcEEEccCCcC-cccCCccc-cCCCCCCEEEccCCcCCcc--cchhhhCCCCCCEEEccCcccccccCccce
Q 006657 268 WL-FGLSHLVFLDLGFNSF-GGPIPDGL-QNLTSLEHLDLRSNNFISS--IPTWLHKFTRLEYLSLRENRLQGMISSVLV 342 (636)
Q Consensus 268 ~l-~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~ 342 (636)
.+ .+..+|+.|.++.++. +..-...+ .+.+.|+.+++..+..... +...-.+++.|+.+.++.+...... ..+
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~--gi~ 391 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE--GIR 391 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh--hhh
Confidence 22 4567888888888763 22111112 3567888888887765321 2222345778888888877543110 000
Q ss_pred EEEccCCCCccccchHHHHhhhcCceEecCCCcCc-ccCccccCCCCCCCEEEccCccC
Q 006657 343 VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD-GQIPAELCRLTSLHILDLSHNNF 400 (636)
Q Consensus 343 ~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l 400 (636)
. -......+..+..+.|+++..+ ...-..+..+++|+.+++-+++-
T Consensus 392 ~------------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 392 H------------LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred h------------hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 0 0011112566777778777654 22334456777888888877653
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00013 Score=69.75 Aligned_cols=79 Identities=28% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCcccch-----hhhC
Q 006657 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP-DGLQNLTSLEHLDLRSNNFISSIPT-----WLHK 319 (636)
Q Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~ 319 (636)
.++.|++|.||-|.++. + ..+..+++|++|+|..|.|..... ..+.++++|+.|+|..|.-.|..+. .+.-
T Consensus 39 kMp~lEVLsLSvNkIss-L--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISS-L--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeecccccc-c--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 44444444444444431 1 224444555555555554432110 1234556666666666555444432 2334
Q ss_pred CCCCCEEE
Q 006657 320 FTRLEYLS 327 (636)
Q Consensus 320 l~~L~~L~ 327 (636)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55665554
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0057 Score=53.40 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=12.9
Q ss_pred ccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEcc
Q 006657 242 LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281 (636)
Q Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 281 (636)
..|.++++|+.+++..+ +. .+....|.++++++.+.+.
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred hhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence 33444444444444332 22 2222334444344444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0086 Score=52.25 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=38.4
Q ss_pred ccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCC
Q 006657 242 LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFT 321 (636)
Q Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 321 (636)
..|.++++|+.+.+.. .+. .+....|.++++|+.+.+..+ +...-...|.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4556666666666653 333 444455666666666666654 4433334455555666666654 33222334455556
Q ss_pred CCCEEEccC
Q 006657 322 RLEYLSLRE 330 (636)
Q Consensus 322 ~L~~L~L~~ 330 (636)
+|+.+.+..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 666665543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0004 Score=70.26 Aligned_cols=87 Identities=20% Similarity=0.165 Sum_probs=53.6
Q ss_pred cccccEEECcCCccCc--cCCcccccccCCCeEeCCCccCcCCC-----CccccCCCCCCEEeCCCCCCCc-cCchhccC
Q 006657 451 LKLVRCMDLSGNNLSG--DIPEEMTNLLALQSLNLSHNFLAGKI-----PENVGAMRSLESIDFSGNLLSG-RIPQSISS 522 (636)
Q Consensus 451 ~~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~~~i-----p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~ 522 (636)
.+.|+.+|+.++...- .+-..-.+++.|+.|.|+++.+.... ...-..+..|+.+.|+++.... ..-..+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 3446777777665431 12222356788888888888653221 1222456778899999987642 23345667
Q ss_pred CCCCCeeeccCCcCc
Q 006657 523 LTFLSHLNLSDNNLT 537 (636)
Q Consensus 523 l~~L~~L~ls~N~l~ 537 (636)
++.|+.+++-+++-.
T Consensus 425 c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 425 CRNLERIELIDCQDV 439 (483)
T ss_pred Ccccceeeeechhhh
Confidence 778888887776543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.00031 Score=67.29 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=45.4
Q ss_pred CCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccccc
Q 006657 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLS 194 (636)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~ 194 (636)
+.+.+.|+.-++.+.+. ..+..|+.|++|.|+-|.++..- .+..|++|++|.|..|.+.++ ..+..+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl-------dEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL-------DELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH-------HHHHHHh
Confidence 44566677777776644 23445677777777777666332 245566666666666655332 2233344
Q ss_pred CCCCCcEEEccCCC
Q 006657 195 GLSLLKHLDLTGVD 208 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~ 208 (636)
++++|+.|-|..|.
T Consensus 86 nlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 86 NLPSLRTLWLDENP 99 (388)
T ss_pred cCchhhhHhhccCC
Confidence 55555555544443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.0069 Score=34.70 Aligned_cols=7 Identities=86% Similarity=1.327 Sum_probs=2.5
Q ss_pred EECcCCc
Q 006657 457 MDLSGNN 463 (636)
Q Consensus 457 L~Ls~N~ 463 (636)
|||++|+
T Consensus 5 Ldls~n~ 11 (22)
T PF00560_consen 5 LDLSGNN 11 (22)
T ss_dssp EEETSSE
T ss_pred EECCCCc
Confidence 3333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.0085 Score=34.30 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=12.5
Q ss_pred CCCEEEccCCccCCCCCccCcC
Q 006657 142 SLRHIDLSRAELTGMIPHQLGN 163 (636)
Q Consensus 142 ~L~~L~L~~n~l~~~~p~~l~~ 163 (636)
+|++||+++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55655543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.0058 Score=66.68 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCCCCEEeCCCCC-CCCCCCchhhcCCCCCCEEEccC
Q 006657 115 LKHLVYLDLSNNN-FENNQIPVFLGFMGSLRHIDLSR 150 (636)
Q Consensus 115 l~~L~~L~Ls~n~-l~~~~ip~~l~~l~~L~~L~L~~ 150 (636)
.+.|+.|.+.... +....+-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4555555555443 22111223334455566666554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.01 Score=64.70 Aligned_cols=116 Identities=27% Similarity=0.236 Sum_probs=71.6
Q ss_pred CccccCCCCCCEEeCCCC-C-CCCC--CCchhhcCCCCCCEEEccCCc-cCCCCCccCcC-CCCCCeEeccCCC-CCCcc
Q 006657 109 NPSLLDLKHLVYLDLSNN-N-FENN--QIPVFLGFMGSLRHIDLSRAE-LTGMIPHQLGN-LFNLQYLDLSIDT-HNPIS 181 (636)
Q Consensus 109 ~~~l~~l~~L~~L~Ls~n-~-l~~~--~ip~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~-~~~~~ 181 (636)
-+.....++|+.|+++++ . .... ........+++|+.|+++++. +++..-..+.. +++|++|.+..+. ++...
T Consensus 207 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 207 DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH
Confidence 345567899999999973 2 1111 122344567899999999987 55444444443 7889999877664 22221
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEee
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 231 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~ 231 (636)
+. ....+++.|++|+++++.......+.....++++|+.|.+.
T Consensus 287 l~-------~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 287 LV-------SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HH-------HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 11 12456788999999987665443333344556766665543
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.00026 Score=75.93 Aligned_cols=192 Identities=28% Similarity=0.211 Sum_probs=113.0
Q ss_pred CCCCEEeCCCCCCCCCC---CchhhcCCCCCCEEEccCCccCCCCCc----cCcCC-CCCCeEeccCCCCCCcccccccc
Q 006657 116 KHLVYLDLSNNNFENNQ---IPVFLGFMGSLRHIDLSRAELTGMIPH----QLGNL-FNLQYLDLSIDTHNPISFSFLYL 187 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~---ip~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l-~~L~~L~Ls~n~~~~~~~~~~~~ 187 (636)
..+..|.|.+|.+.... +-..+...++|+.|++++|.+.+.--. .+... ..|++|++..|.+.......
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~--- 163 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP--- 163 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH---
Confidence 44888999999987652 223456678889999999988744222 22232 56777887777665432221
Q ss_pred cccccccCCCCCcEEEccCCCCCCC--CChhhhh----CCCCCCCEEEeecCCCCCCCC---CccccCCCC-CcEEEccc
Q 006657 188 ENFSWLSGLSLLKHLDLTGVDLSTA--SDWFLVT----NMLPSLQVLKLSACSLHNSLP---ELPIANFSS-LYTLDLSY 257 (636)
Q Consensus 188 ~~l~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~----~~l~~L~~L~L~~n~l~~~~p---~~~~~~l~~-L~~L~Ls~ 257 (636)
....+.....++.++++.|.+... ......+ ....++++|++.+|.++...- ...+...+. +..|++..
T Consensus 164 -l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 -LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred -HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 112355678888888888877533 1111122 246678888888887763110 011233344 55677777
Q ss_pred CCCCCCCC---hhhhcCC-CCCcEEEccCCcCcccCC----ccccCCCCCCEEEccCCcCCc
Q 006657 258 NEFDNTLV---PSWLFGL-SHLVFLDLGFNSFGGPIP----DGLQNLTSLEHLDLRSNNFIS 311 (636)
Q Consensus 258 n~l~~~~~---~~~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~ 311 (636)
|.+.+... ...+..+ ..+++++++.|.++..-. ..+..++.++++.+++|.+..
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 77653211 0223334 556777777777764432 334456677777777777653
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.0021 Score=60.12 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=74.5
Q ss_pred ccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCee
Q 006657 450 MLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHL 529 (636)
Q Consensus 450 ~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 529 (636)
..+..+.||++.|++- ..-..|+-++.|..|+++.|++. ..|..++.+..+..+++.+|..+ ..|.++...+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4455889999999987 56667888899999999999998 78889999999999999999998 789999999999999
Q ss_pred eccCCcCc
Q 006657 530 NLSDNNLT 537 (636)
Q Consensus 530 ~ls~N~l~ 537 (636)
++..|++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99999864
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.0073 Score=56.63 Aligned_cols=84 Identities=18% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCc
Q 006657 73 TGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAE 152 (636)
Q Consensus 73 ~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~ 152 (636)
..||+.||++.+++. .+-..++-++.|..||++.|.+. .+|..++....++++++..|.
T Consensus 41 ~kr~tvld~~s~r~v-------------------n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-------------------NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred cceeeeehhhhhHHH-------------------hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccc
Confidence 357888888776321 22234566778888899988887 578888888888888888888
Q ss_pred cCCCCCccCcCCCCCCeEeccCCCCC
Q 006657 153 LTGMIPHQLGNLFNLQYLDLSIDTHN 178 (636)
Q Consensus 153 l~~~~p~~l~~l~~L~~L~Ls~n~~~ 178 (636)
.+ ..|.+++.+++++++++..|.++
T Consensus 100 ~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 100 HS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hh-hCCccccccCCcchhhhccCcch
Confidence 87 78888888888888888887653
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.17 Score=26.83 Aligned_cols=6 Identities=67% Similarity=0.966 Sum_probs=2.1
Q ss_pred EeCCCc
Q 006657 481 LNLSHN 486 (636)
Q Consensus 481 L~Ls~N 486 (636)
|+|++|
T Consensus 6 L~l~~n 11 (17)
T PF13504_consen 6 LDLSNN 11 (17)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
|
... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.0028 Score=68.04 Aligned_cols=191 Identities=25% Similarity=0.206 Sum_probs=124.5
Q ss_pred cCCCCCcceee----cCccccCCCCCCEEeCCCCCCCCCCCc---hhhcCC-CCCCEEEccCCccCCC----CCccCcCC
Q 006657 97 YDDETSKLIGK----INPSLLDLKHLVYLDLSNNNFENNQIP---VFLGFM-GSLRHIDLSRAELTGM----IPHQLGNL 164 (636)
Q Consensus 97 ~~~~~~~l~g~----i~~~l~~l~~L~~L~Ls~n~l~~~~ip---~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l 164 (636)
+++.+|.+... +-..+....+|+.|++++|.+.+.... ..+... ..|++|++..|.+++. +...+...
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~ 171 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN 171 (478)
T ss_pred hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence 33444444433 334567788999999999999754222 222222 5678888888888754 45566678
Q ss_pred CCCCeEeccCCCCCCcccccccccccc-cccCCCCCcEEEccCCCCCCC--CChhhhhCCCCC-CCEEEeecCCCCCCCC
Q 006657 165 FNLQYLDLSIDTHNPISFSFLYLENFS-WLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPS-LQVLKLSACSLHNSLP 240 (636)
Q Consensus 165 ~~L~~L~Ls~n~~~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~-L~~L~L~~n~l~~~~p 240 (636)
..++.++++.|.+.....-... ..++ .+....++++|.++++.++.. ..+...+...+. +..|++..|.+.+..-
T Consensus 172 ~~l~~l~l~~n~l~~~g~~~l~-~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 172 EHLTELDLSLNGLIELGLLVLS-QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred cchhHHHHHhcccchhhhHHHh-hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 8999999999977422111000 0111 134578899999999988855 233445566666 7789999998874311
Q ss_pred C---ccccCC-CCCcEEEcccCCCCCCCC---hhhhcCCCCCcEEEccCCcCccc
Q 006657 241 E---LPIANF-SSLYTLDLSYNEFDNTLV---PSWLFGLSHLVFLDLGFNSFGGP 288 (636)
Q Consensus 241 ~---~~~~~l-~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~ 288 (636)
. ..+..+ ..+++++++.|.++..-. ...+..++.++++.++.|.+...
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 0 123344 678999999999975432 13455678999999999988743
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=86.61 E-value=0.67 Score=27.48 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=8.2
Q ss_pred CCCCEEeCCCCCCC
Q 006657 500 RSLESIDFSGNLLS 513 (636)
Q Consensus 500 ~~L~~L~Ls~N~l~ 513 (636)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666655
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=86.61 E-value=0.67 Score=27.48 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=8.2
Q ss_pred CCCCEEeCCCCCCC
Q 006657 500 RSLESIDFSGNLLS 513 (636)
Q Consensus 500 ~~L~~L~Ls~N~l~ 513 (636)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666655
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=86.08 E-value=0.74 Score=27.31 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=8.5
Q ss_pred CCCcEEEcccCCCCCCCC
Q 006657 248 SSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~ 265 (636)
++|+.|+|++|+++ .+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 34555555555554 444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=86.08 E-value=0.74 Score=27.31 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=8.5
Q ss_pred CCCcEEEcccCCCCCCCC
Q 006657 248 SSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~ 265 (636)
++|+.|+|++|+++ .+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLS-SLP 18 (26)
T ss_pred CCCCEEECCCCcCC-cCC
Confidence 34555555555554 444
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=82.60 E-value=0.53 Score=27.33 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=12.6
Q ss_pred CCCCEEEccCccCccccchhh
Q 006657 388 TSLHILDLSHNNFSGTLPRCI 408 (636)
Q Consensus 388 ~~L~~L~Ls~N~l~~~~p~~l 408 (636)
++|++|+|++|++++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 567788888887775554443
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 636 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 8e-35 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 8e-35 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 8e-19 | ||
| 3j0a_A | 844 | Homology Model Of Human Toll-Like Receptor 5 Fitted | 7e-04 | ||
| 3fxi_A | 605 | Crystal Structure Of The Human Tlr4-Human Md-2-E.Co | 8e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844 | Back alignment and structure |
|
| >pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 364 bits (936), Expect = e-116
Identities = 157/553 (28%), Positives = 241/553 (43%), Gaps = 77/553 (13%)
Query: 30 GCIQSERKALLRFKQDLKDPANRLASWSDG-NCCTWAGVVCNDSTGRVLELRLGNPFLHD 88
+ E L+ FK L D N L WS N CT+ GV C +V + L + L
Sbjct: 8 QSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPL-- 62
Query: 89 DEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDL 148
+ ++ SLL L L L LSN++ N + F SL +DL
Sbjct: 63 -------------NVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSGF-KCSASLTSLDL 107
Query: 149 SRAELTGMIP--HQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTG 206
SR L+G + LG+ L++L++S N + F S L+ L+ LDL+
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVS---SNTLDFPG----KVSGGLKLNSLEVLDLSA 160
Query: 207 VDLS-TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLV 265
+S +++++ L+ L +S + + ++ +L LD+S N F +
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGD---VDVSRCVNLEFLDVSSNNFSTGI- 216
Query: 266 PSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEY 325
+L S L LD+ N G + T L+ L++ SN F+ IP L+Y
Sbjct: 217 -PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273
Query: 326 LSLRENRLQGMI-------SSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFD 377
LSL EN+ G I L D+ N F G +P + G L L L SN F
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS--CSLLESLALSSNNFS 331
Query: 378 GQIPAE-LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN----QENSMETDKEYDTFTI 432
G++P + L ++ L +LDLS N FSG LP + NL+A + N+ + I
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF-------SGPI 384
Query: 433 ELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI 492
++ ++ + L N +G IP ++N L SL+LS N+L+G I
Sbjct: 385 LPNLC----------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 493 PENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG----TQLQG 548
P ++G++ L + N+L G IPQ + + L L L N+LTG+IP G T L
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 549 FNASCFAGNNLCG 561
+ S N L G
Sbjct: 495 ISLS---NNRLTG 504
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-109
Identities = 138/479 (28%), Positives = 199/479 (41%), Gaps = 43/479 (8%)
Query: 103 KLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162
G + P L L LS+NNF L M L+ +DLS E +G +P L
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 163 NL-FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLS-TASDWFLVTN 220
NL +L LDLS N S + + + L+ L L +
Sbjct: 365 NLSASLLTLDLS---SNNFSGP---ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS--- 415
Query: 221 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
L L LS L ++P + + S L L L N + + P L + L L L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLIL 473
Query: 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV 340
FN G IP GL N T+L + L +N IP W+ + L L L N G I +
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 341 ------LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILD 394
L+ D+ N F+G IPA + ++ +N G+ +
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMF-----KQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 395 LSHN--NFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLK 452
+ N F G +N L+ + V G
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITS----------------RVYGGHTSPTFDNNG 632
Query: 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512
+ +D+S N LSG IP+E+ ++ L LNL HN ++G IP+ VG +R L +D S N L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 513 SGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLPKNCTD 570
GRIPQ++S+LT L+ ++LS+NNL+G IP Q + F + F N LCG PLP+
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = 1e-91
Identities = 134/477 (28%), Positives = 199/477 (41%), Gaps = 81/477 (16%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIP---VFLGFMGSLRHIDLSRAELTGMIPHQLGNLFN 166
L L L LDLS N+ + V G L+H+ +S +++G + + N
Sbjct: 145 SGGLKLNSLEVLDLSANSI-SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201
Query: 167 LQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLS-TASDWFLVTNMLPSL 225
L++LD+S N S +L S L+HLD++G LS S + L
Sbjct: 202 LEFLDVS---SNNFSTGI------PFLGDCSALQHLDISGNKLSGDFSRAI---STCTEL 249
Query: 226 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG-LSHLVFLDLGFNS 284
++L +S+ +P SL L L+ N+F + P +L G L LDL N
Sbjct: 250 KLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNH 305
Query: 285 FGGPIPDGLQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMI------ 337
F G +P + + LE L L SNNF +P L K L+ L L N G +
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Query: 338 -SSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDL 395
S+ L+ D+ N FSG I + + L L L++N F G+IP L + L L L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 396 SHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVR 455
S N SGT+P + +L+ +L L
Sbjct: 426 SFNYLSGTIPSSLGSLS--------------------KLRDL------------------ 447
Query: 456 CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515
L N L G+IP+E+ + L++L L N L G+IP + +L I S N L+G
Sbjct: 448 --KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 516 IPQSISSLTFLSHLNLSDNNLTGKIPLG----TQLQGFNASCFAGNNLCGAPLPKNC 568
IP+ I L L+ L LS+N+ +G IP L + + N G +P
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN---TNLFNG-TIPAAM 558
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
+ + G +P+ + +++LD+S N IP +G M L ++L ++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDI 668
Query: 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDL 204
+G IP ++G+L L LDLS N L +S L++L +DL
Sbjct: 669 SGSIPDEVGDLRGLNILDLS---SN-----KLDGRIPQAMSALTMLTEIDL 711
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 3e-72
Identities = 95/332 (28%), Positives = 134/332 (40%), Gaps = 68/332 (20%)
Query: 243 PIANFSSLYTLDLSYNEFDNTL-VPSWLFGLSHLVFLDL-GFNSFGGPIPDGLQNLTSLE 300
+ LDLS +PS L L +L FL + G N+ GPIP + LT L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIG 360
+L + N +IP +L + L L N L SG +P I
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL------------------SGTLPPSIS 146
Query: 361 EKLLRNL-ILRLRSNKFDGQIPAELCRLTSLH-ILDLSHNNFSGTLPRCINNLTAMMNQE 418
L NL + N+ G IP + L + +S N +G +P NL
Sbjct: 147 S--LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------ 198
Query: 419 NSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLAL 478
L+ + DLS N L GD +
Sbjct: 199 ---------------LAFV--------------------DLSRNMLEGDASVLFGSDKNT 223
Query: 479 QSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538
Q ++L+ N LA + + VG ++L +D N + G +PQ ++ L FL LN+S NNL G
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 539 KIPLGTQLQGFNASCFAGNN-LCGAPLPKNCT 569
+IP G LQ F+ S +A N LCG+PLP CT
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 5e-47
Identities = 82/382 (21%), Positives = 126/382 (32%), Gaps = 106/382 (27%)
Query: 31 CIQSERKALLRFKQDLKDPANRLASWSDGN---CCTWAGVVCNDST--GRVLELRLGNPF 85
C +++ALL+ K+DL +P L+SW TW GV+C+ T RV L L
Sbjct: 3 CNPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 86 LHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRH 145
L I SL +L +L +L + N IP + + L +
Sbjct: 62 LP----------------KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 146 IDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLT 205
+ ++ ++G IP L + L LD S +N +S + +S L L +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFS---YNALSGTLP-----PSISSLPNLVGITF- 156
Query: 206 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLV 265
N +
Sbjct: 157 --------------------------------------------------DGNRISGAI- 165
Query: 266 PSWLFGLSHLV-FLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLE 324
P S L + + N G IP NL +L +DL N +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 325 YLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAE 383
+ L +N L + V G +NL L LR+N+ G +P
Sbjct: 225 KIHLAKNSLAFDLGKV------------GL---------SKNLNGLDLRNNRIYGTLPQG 263
Query: 384 LCRLTSLHILDLSHNNFSGTLP 405
L +L LH L++S NN G +P
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP 285
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 6e-36
Identities = 59/259 (22%), Positives = 96/259 (37%), Gaps = 64/259 (24%)
Query: 289 IPDGLQNLTSL----EHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVF 344
I L N T+L D + ++ + + R+ L L L
Sbjct: 14 IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK--------- 64
Query: 345 DIGENGFSGNIPAWIGE-KLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403
IP+ + L L + N G IP + +LT LH L ++H N SG
Sbjct: 65 -------PYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116
Query: 404 LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN 463
+P ++ + L L D S N
Sbjct: 117 IPDFLSQIK--------------------TLVTL--------------------DFSYNA 136
Query: 464 LSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSL-ESIDFSGNLLSGRIPQSISS 522
LSG +P +++L L + N ++G IP++ G+ L S+ S N L+G+IP + ++
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 523 LTFLSHLNLSDNNLTGKIP 541
L L+ ++LS N L G
Sbjct: 197 LN-LAFVDLSRNMLEGDAS 214
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 467 DIPEEMTNLLALQS----LNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR--IPQSI 520
I +++ N L S + + G + + + ++D SG L IP S+
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 521 SSLTFLSHLNLSD-NNLTGKIPLG----TQLQGFNASCFAGNNLCG 561
++L +L+ L + NNL G IP TQL + N+ G
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---HTNVSG 115
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 1e-57
Identities = 91/443 (20%), Positives = 158/443 (35%), Gaps = 39/443 (8%)
Query: 118 LVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTH 177
D S+ Q+P L ++ ++L+ +L + L LD+
Sbjct: 6 HEVADCSHLKL--TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG---F 58
Query: 178 NPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 237
N IS LE L +LK L+L +LS SD +L L L + S+
Sbjct: 59 NTISK----LEPEL-CQKLPMLKVLNLQHNELSQLSDKTF--AFCTNLTELHLMSNSIQ- 110
Query: 238 SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ--N 295
+ P +L TLDLS+N ++ L +L L L N + L
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169
Query: 296 LTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV---------LVVFDI 346
+SL+ L+L SN P H RL L L +L ++ + +
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 347 GENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
+ S NL +L L N + L L L +NN
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 406 RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS 465
++ L + + + + +I L+ L + + L+ +++ N++
Sbjct: 290 HSLHGLFNV----RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH---LNMEDNDIP 342
Query: 466 GDIPEEMTNLLALQSLNLSHNFLAGKIPENVG----AMRSLESIDFSGNLLSGRIPQSIS 521
G T L+ L+ L+LS++F + + N A L ++ + N +S + S
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Query: 522 SLTFLSHLNLSDNNLTGKIPLGT 544
L L L+L N + ++
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 5e-56
Identities = 86/455 (18%), Positives = 143/455 (31%), Gaps = 51/455 (11%)
Query: 108 INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167
+ L LD+ N + + + L+ ++L EL+ + NL
Sbjct: 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNL 99
Query: 168 QYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 227
L L N I ++N L LDL+ LS+ V L +LQ
Sbjct: 100 TELHLM---SNSIQ----KIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQ--LENLQE 149
Query: 228 LKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG 286
L LS + E L I SSL L+LS N+ P + L L L G
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLG 208
Query: 287 GPIPDGLQ---NLTSLEHLDLRSNNFISSIPTWLH--KFTRLEYLSLRENRLQGMISSV- 340
+ + L TS+ +L L ++ ++ T K+T L L L N L + +
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 341 -----LVVFDIGENGFSGNIPAWIGE-------KLLRNLI-LRLRSNKFDGQIPAELCRL 387
L F + N + L R+ + L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328
Query: 388 TSLHILDLSHNNFSGTLPRCINNLTAMMN---QENSMETDKEYDTFTIELSILVVMKGRE 444
L L++ N+ G L + + T+ V +
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS------LRTLTNETFVSLAHSP 382
Query: 445 LAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLE 503
L ++L+ N +S + + L L+ L+L N + ++ + ++
Sbjct: 383 LHI---------LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Query: 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538
I S N S + + L L L L
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 8e-55
Identities = 84/468 (17%), Positives = 149/468 (31%), Gaps = 59/468 (12%)
Query: 102 SKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGF-MGSLRHIDLSRAELTGMIPHQ 160
+ + L + L LSN+ FLG +L +DLS L +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 161 LGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 220
L L+Y L +N I F L GL +++L+L
Sbjct: 268 FAWLPQLEYFFLE---YNNIQHLF-----SHSLHGLFNVRYLNLKR-------------- 305
Query: 221 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
S +S SL + + L L++ N+ + + GL +L +L L
Sbjct: 306 ---SFTKQSISLASLP-KIDDFSFQWLKCLEHLNMEDNDI-PGIKSNMFTGLINLKYLSL 360
Query: 281 GFN--SFGGPIPDGLQNL--TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
+ S + +L + L L+L N LE L L N +
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420
Query: 337 IS-------SVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDG--QIPAELCR 386
++ + + N + + +L L LR P+
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL--VPSLQRLMLRRVALKNVDSSPSPFQP 478
Query: 387 LTSLHILDLSHNNFSGTLPRCINNLTAMMN---QENSMETDKEYDTFTIELSILVVMKGR 443
L +L ILDLS+NN + + L + Q N++ ++ + L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL------ 532
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503
L + ++L N E +L L+ ++L N L SL+
Sbjct: 533 -----KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587
Query: 504 SIDFSGNLLSGRIPQSIS-SLTFLSHLNLSDNNLTGKIPLGTQLQGFN 550
S++ NL++ + + L+ L++ N +
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 4e-38
Identities = 94/448 (20%), Positives = 143/448 (31%), Gaps = 113/448 (25%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
+ L + S LK L +L++ +N+ +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-------------------------I 341
Query: 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTAS 213
G+ + L NL+YL LS ++ S L E F L S L L+LT +S
Sbjct: 342 PGIKSNMFTGLINLKYLSLS---NSFTSLRTLTNETFVSL-AHSPLHILNLTKNKISKIE 397
Query: 214 DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273
L L+VL L + L +++ + LSYN++ L + +
Sbjct: 398 SDAFSW--LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVP 454
Query: 274 HLVFLDLGFNSFGG--PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
L L L + P Q L +L LDL +NN + L +LE L L+ N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514
Query: 332 RLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLH 391
L RL + G L L+ LH
Sbjct: 515 NLA-----------------------------------RLWKHANPGGPIYFLKGLSHLH 539
Query: 392 ILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTML 451
IL+L N F +L EL I+
Sbjct: 540 ILNLESNGFDEIPVEVFKDLF--------------------ELKII-------------- 565
Query: 452 KLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVG-AMRSLESIDFSGN 510
DL NNL+ N ++L+SLNL N + + G A R+L +D N
Sbjct: 566 ------DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLTG 538
S F++ +N + N+
Sbjct: 620 PFDCTCE---SIAWFVNWINETHTNIPE 644
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 56/265 (21%), Positives = 88/265 (33%), Gaps = 54/265 (20%)
Query: 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV------LVVFDIGENG 350
S E D S+ ++ +P L T + L+L N+L+ + ++ L D+G N
Sbjct: 4 VSHEVADC-SHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 351 FSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN 409
S P + L L +L L+ N+ T+L L L N+
Sbjct: 61 ISKLEPELCQK--LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 410 NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIP 469
L L DLS N LS
Sbjct: 119 KQKN--------------------LITL--------------------DLSHNGLSSTKL 138
Query: 470 EEMTNLLALQSLNLSHNFLAGKIPE--NVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527
L LQ L LS+N + E ++ A SL+ ++ S N + P ++ L
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198
Query: 528 HLNLSDNNLTGKIPLGTQLQGFNAS 552
L L++ L + L+ N S
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTS 223
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 1e-57
Identities = 65/510 (12%), Positives = 149/510 (29%), Gaps = 77/510 (15%)
Query: 94 LEDYDDETSKLIGKINPSL--LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRA 151
E D L+ ++++ + + I I
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS-IKKSSRITLKDTQIGQLSN 193
Query: 152 ELTGMIPHQLGNLFNLQYLDLSIDTHNPIS-FSFLYLENFSWLSGLSLLKHLDLTGVDLS 210
+T + + L L+ + ++P + K DL
Sbjct: 194 NITF-VSKAVMRLTKLRQFYMG---NSPFVAENICEAWENENSEYAQQYKTEDLKW---- 245
Query: 211 TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF-------DNT 263
+ L L +++ C LP + + ++++ N D+
Sbjct: 246 ---------DNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDW 295
Query: 264 LVPSWLFGLSHLVFLDLGFNSF-GGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTR 322
+ + + +G+N+ P+ LQ + L L+ N +P +
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIK 354
Query: 323 LEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNK 375
L L+L N++ + ++ + N IP K + + + N+
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNE 413
Query: 376 FDG-------QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN---QENSMETDK 425
+ + ++ ++LS+N S + + + + N +
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473
Query: 426 EYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEE--MTNLLALQSLNL 483
+ + L+ +DL N L+ + ++ T L L ++L
Sbjct: 474 KNSLKDENENF------------KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDL 520
Query: 484 SHNFLAGKIPENVGAMRSLESI------DFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
S+N + P +L+ D GN P+ I+ L+ L + N++
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Query: 538 GKIP--LGTQLQGFNASCFAGNNLCGAPLP 565
+ + + + N L
Sbjct: 580 K-VNEKITPNISVLDIK---DNPNISIDLS 605
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 3e-52
Identities = 67/449 (14%), Positives = 136/449 (30%), Gaps = 87/449 (19%)
Query: 130 NNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLEN 189
Q V L G + + L +G +P +G L L+ L L + + L
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALG---SHGEKVNER-LFG 125
Query: 190 FSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSS 249
+S + + + L +++ S+ +
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLK 184
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP-------------------IP 290
+ N T V + L+ L +G + F
Sbjct: 185 DTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350
NL L +++ + ++ +PT+L ++ +++ NR +
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS----------GEQLK 292
Query: 351 FSGNIPAWIGEKLLRNL-ILRLRSNKF-DGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408
A + + I+ + N + L ++ L +L+ +N G LP
Sbjct: 293 DDWQALADAP--VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349
Query: 409 NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN----------TMLKLVRCMD 458
+ L+ L LAYN + V +
Sbjct: 350 GSEIK--------------------LASL------NLAYNQITEIPANFCGFTEQVENLS 383
Query: 459 LSGNNLSGDIPE--EMTNLLALQSLNLSHNFLAG-------KIPENVGAMRSLESIDFSG 509
+ N L IP + ++ + +++ S+N + + ++ SI+ S
Sbjct: 384 FAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442
Query: 510 NLLSGRIPQSISSLTFLSHLNLSDNNLTG 538
N +S + S+ + LS +NL N LT
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTE 471
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 1e-51
Identities = 69/479 (14%), Positives = 145/479 (30%), Gaps = 92/479 (19%)
Query: 82 GNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMG 141
+PF+ ++ E+ + E ++ + +LK L +++ N ++P FL +
Sbjct: 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALP 273
Query: 142 SLRHIDLSRAELTGM--------IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193
++ I+++ +Q + + +N + + L
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG---YN----NLKTFPVETSL 326
Query: 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP---IANFSSL 250
+ L L+ L F L L L+ +N + E+P +
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPAF---GSEIKLASLNLA----YNQITEIPANFCGFTEQV 379
Query: 251 YTLDLSYNEFDNTLVPSWLF--GLSHLVFLDLGFNSFGG-------PIPDGLQNLTSLEH 301
L ++N+ +P+ +S + +D +N G P+ ++
Sbjct: 380 ENLSFAHNKL--KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437
Query: 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGE 361
++L +N + L ++L N L + + L +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL-----------KDENENFKN 486
Query: 362 KLLRNL-ILRLRSNKFDGQIPAEL--CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQE 418
L + LR NK + + L L +DLS+N+FS P N + +
Sbjct: 487 --TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL---- 538
Query: 419 NSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLAL 478
+ D GN + PE +T +L
Sbjct: 539 ------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSL 568
Query: 479 QSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
L + N + K+ E + ++ +D N + L +
Sbjct: 569 TQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 33/292 (11%), Positives = 63/292 (21%), Gaps = 68/292 (23%)
Query: 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF----ISSIPTWLHKFTRLEYLS 327
+ L L G +PD + LT LE L L S+ P + E
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 328 LRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRL 387
Q E + + S+ I
Sbjct: 140 KMRMHYQKTFVDYD-----------------PREDFSDLIKDCINSDPQQKSIKKSSRIT 182
Query: 388 TSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAY 447
+ NN + + + + LT L
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTK--------------------LRQF---------- 211
Query: 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDF 507
+ + + E + ++ L ++
Sbjct: 212 ----------YMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEV 256
Query: 508 SGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNL 559
++P + +L + +N++ N L Q A G +
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL-ADAPVGEKI 307
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 5e-49
Identities = 88/435 (20%), Positives = 152/435 (34%), Gaps = 35/435 (8%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT 176
LDLS N + F L+ +DLSR E+ + +L +L L L+
Sbjct: 29 STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT--- 84
Query: 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236
NPI SGLS L+ L +L++ ++ + L +L+ L ++ +
Sbjct: 85 GNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQ 137
Query: 237 NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL----VFLDLGFNSFGGPIPDG 292
+ +N ++L LDLS N+ ++ + L L + + LDL N P
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 293 LQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351
+ + L L LR+N ++ T + LE L + + + ++
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN----LEKFDKSAL 251
Query: 352 SGNIPAWIGEKLLRNLILRLRSNK-FDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN- 409
G L RL + I LT++ L N
Sbjct: 252 EGLCN-------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304
Query: 410 NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS--GD 467
+ +++ KG L + +DLS N LS G
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364
Query: 468 IPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI-SSLTFL 526
+ +L+ L+LS N + + N + LE +DF + L S+ SL L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 527 SHLNLSDNNLTGKIP 541
+L++S +
Sbjct: 424 IYLDISHTHTRVAFN 438
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 6e-47
Identities = 89/475 (18%), Positives = 141/475 (29%), Gaps = 97/475 (20%)
Query: 103 KLIGKINPSLLDLKHL----VYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIP 158
K+ L L + + LDLS N Q F L + L + +
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVM 217
Query: 159 HQ-LGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLL--KHLDLTGVDLSTASDW 215
+ L L+ L + + L + S L GL L + L +D D
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFR--NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL-DDI 274
Query: 216 FLVTNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH 274
+ N L ++ L ++ + + L+L +F L L
Sbjct: 275 IDLFNCLTNVSSFSLV----SVTIERVKDFSYNFGWQHLELVNCKF-GQFPTLKLKSLKR 329
Query: 275 LVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN--NFISSIPTWLHKFTRLEYLSLRENR 332
L F +L SLE LDL N +F T L+YL L N
Sbjct: 330 LTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 333 LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAE-LCRLTSL 390
+ M S+ F G L L L + + L +L
Sbjct: 385 VITMSSN-----------FLG----------LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 391 HILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTM 450
LD+SH + N L++ L +L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSS--------------------LEVL------------- 450
Query: 451 LKLVRCMDLSGNNLSGDI-PEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSG 509
++GN+ + P+ T L L L+LS L P ++ SL+ ++ S
Sbjct: 451 -------KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 510 NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP-----LGTQLQGFNASCFAGNNL 559
N L L L+ S N++ + L N + N+
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT---QNDF 555
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 8e-45
Identities = 90/464 (19%), Positives = 156/464 (33%), Gaps = 64/464 (13%)
Query: 103 KLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162
++ + + L HL L L+ N ++ + F + SL+ + L + +G
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIG 121
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 222
+L L+ L+++ HN I + + S L+ L+HLDL+ + + + L
Sbjct: 122 HLKTLKELNVA---HNLIQ----SFKLPEYFSNLTNLEHLDLSSNKIQS-----IYCTDL 169
Query: 223 PSLQVLKLSACSL---HNSLPELPIANFS--SLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277
L + L SL N + + F L+ L L N ++ + + GL+ L
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Query: 278 LDLGFNSFGG------PIPDGLQNLTSLEHLDLRSNN---FISSIPTWLHKFTRLEYLSL 328
L F L+ L +L + R ++ I + T + SL
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 329 RENRLQGMIS----SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAEL 384
++ + ++ F L++L RL G
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQ-----FPTLKLKSL-KRLTFTSNKGGNAFSE 343
Query: 385 CRLTSLHILDLSHN--NFSGTLPRCINNLTAMMN---QENSMETDKEYDTFTIELSILVV 439
L SL LDLS N +F G + T++ N + T +L L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL-- 401
Query: 440 MKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENVGA 498
D +NL + +L L L++SH
Sbjct: 402 ------------------DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 499 MRSLESIDFSGNLLSGRI-PQSISSLTFLSHLNLSDNNLTGKIP 541
+ SLE + +GN P + L L+ L+LS L P
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-35
Identities = 66/296 (22%), Positives = 111/296 (37%), Gaps = 25/296 (8%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT--GMIPHQLGNLFNLQ 168
L LK L L ++N N + SL +DLSR L+ G +L+
Sbjct: 320 PTLKLKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 228
YLDLS N + S GL L+HLD +L S++ + + L +L L
Sbjct: 377 YLDLS---FNGVI------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYL 426
Query: 229 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP 288
+S + + SSL L ++ N F +P L +L FLDL
Sbjct: 427 DISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV-------L 341
P +L+SL+ L++ NNF S L+ L N + L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 342 VVFDIGENGFSGNIPA-WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLS 396
++ +N F+ + + L + + + P++ + + L+++
Sbjct: 546 AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK-QGMPVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 6e-34
Identities = 61/321 (19%), Positives = 95/321 (29%), Gaps = 34/321 (10%)
Query: 235 LHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ 294
+ + ++P S LDLS+N L F L LDL Q
Sbjct: 15 MELNFYKIPDNLPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV------LVVFDIGE 348
+L+ L L L N S + L+ L E L + + L ++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 349 NGF-SGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHI----LDLSHNNFSG 402
N S +P + L NL L L SNK +L L + + LDLS N +
Sbjct: 134 NLIQSFKLPEYFSN--LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 403 TLPRCIN--NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLS 460
P L + + N + LA + +LV +
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ------------GLAGLEVHRLVLGEFRN 239
Query: 461 GNNLSGDIPEEMTNLLALQSLNLSHNFL---AGKIPENVGAMRSLESIDFSGNLLSGRIP 517
NL + L L +L I + + ++ S +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--V 297
Query: 518 QSISSLTFLSHLNLSDNNLTG 538
+ S HL L +
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQ 318
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 2e-48
Identities = 84/602 (13%), Positives = 177/602 (29%), Gaps = 114/602 (18%)
Query: 41 RFKQDLKDPANRLASWS-DGNCCTWAGVVCN--DSTGRVLELRLGN-------------- 83
R+ + +W+ + W D+ GRV L L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346
Query: 84 ----------------PFLHDDEPFWLEDYDDETSKLIGKINPSLLD-LKHLVYLDLSNN 126
L DE + ++ ++ LD + L DL +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
Query: 127 NFENNQIPVFLGFMGSLRHIDLSRAELTGM------IPHQLGNLFNLQYLDLSIDTHNPI 180
N + + I L ++ + I + L LQ + + ++
Sbjct: 407 AINRNPE---MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA---NS-- 458
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLP 240
F++ + + + + + L L ++L C LP
Sbjct: 459 --------PFTYDNIAVDWEDANSDYAKQYENEELSW--SNLKDLTDVELYNCPNMTQLP 508
Query: 241 ELPIANFSSLYTLDLSYNEF--------DNTLVPSWLFGLSHLVFLDLGFNSFGG-PIPD 291
+ + + L +L+++ N D T + + +G+N+ P
Sbjct: 509 DF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567
Query: 292 GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV------LVVFD 345
LQ + L LD +N + + +L L L N+++ + +
Sbjct: 568 SLQKMVKLGLLDC-VHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625
Query: 346 IGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIP-----AELCRLTSLHILDLSHNN 399
N IP K + + + NK + + + + + LS+N
Sbjct: 626 FSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684
Query: 400 FSGTLPRCINNLTAMMN---QENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRC 456
+ + N M + E + + L+
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY------------KNTYLLTT 732
Query: 457 MDLSGNNLSGDIPEEM--TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL--- 511
+DL N L+ + ++ T L L ++++S+N + P L++
Sbjct: 733 IDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790
Query: 512 ---LSGRIPQSISSLTFLSHLNLSDNNLTGKIP--LGTQLQGFNASCFAGNNLCGAPLPK 566
+ + P I++ L L + N++ K+ L QL + + N +
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIA---DNPNISIDVTS 846
Query: 567 NC 568
C
Sbjct: 847 VC 848
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-48
Identities = 73/479 (15%), Positives = 145/479 (30%), Gaps = 98/479 (20%)
Query: 104 LIGKINPSLLDLKHLVYLDLSNNNFE------------------NNQIPVFLGFMGSLRH 145
I I+ ++ L L + +N+ F + + L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 146 IDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL----SGLSLLKH 201
++L +P L +L LQ L+++ N + +++ L ++
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIA---CNRGISAAQLKADWTRLADDEDTGPKIQI 552
Query: 202 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEF 260
+ +L + + L +L HN + L L L L YN+
Sbjct: 553 FYMGYNNLEEFPASASLQK-MVKLGLLDCV----HNKVRHLEAFGTNVKLTDLKLDYNQI 607
Query: 261 DNTLVPSWLF-GLSHLVFLDLGFNSFGG-PIPDGLQNLTSLEHLDLRSNNFISSIPTWL- 317
+ +P + L N P +++ + +D S N I S +
Sbjct: 608 EE--IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF-SYNKIGSEGRNIS 664
Query: 318 -----HKFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWIGEKL--- 363
+K ++L N +Q + + + + N + +IP +
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723
Query: 364 ---LRNL-ILRLRSNKFDGQIPAEL--CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQ 417
L + LR NK + + L L +D+S+N FS + P N + +
Sbjct: 724 YKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQL--- 778
Query: 418 ENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLA 477
+ D GN + P +T +
Sbjct: 779 -------------------------------KAFGIRHQRDAEGNRILRQWPTGITTCPS 807
Query: 478 LQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN-LLSGRIPQSISSLTFLSHLNLSDNN 535
L L + N + K+ E + L +D + N +S + + ++ L D
Sbjct: 808 LIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-25
Identities = 42/237 (17%), Positives = 75/237 (31%), Gaps = 24/237 (10%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGF----MGSLRHIDLSRAELTGMIPHQLGNLFN 166
+ + + +D S N + + + + LS E+
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698
Query: 167 LQYLDLSIDTHNPISF--SFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
+ + LS +N ++ LL +DL L++ SD F T LP
Sbjct: 699 ISTIILS---NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT-LPY 754
Query: 225 LQVLKLSACSLHNSLPELP--IANFSSLYTLDLSYNEFDN-----TLVPSWLFGLSHLVF 277
L + +S +N P N S L + + P+ + L+
Sbjct: 755 LSNMDVS----YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810
Query: 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
L +G N + + L L LD+ N IS T + + L ++ Q
Sbjct: 811 LQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 6e-13
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 25/209 (11%)
Query: 103 KLIGKINPSLLDLKHLVYLDLSNNNFEN------NQIPVFLGFMGSLRHIDLSRAELTGM 156
++ + + LSNN + L IDL +LT +
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743
Query: 157 IPH-QLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDW 215
+ L L +D+S +N S N S L + D G +
Sbjct: 744 SDDFRATTLPYLSNMDVS---YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800
Query: 216 FLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275
+ T PSL L++ N + ++ LY LD++ N + V S +
Sbjct: 801 GITT--CPSLIQLQIG----SNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAG 854
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304
+ L ++ Q++ + L +
Sbjct: 855 M-YVLLYD--------KTQDIRGCDALGI 874
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 17/162 (10%)
Query: 102 SKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQL 161
+ + + + L +DL N + + L ++D+S + P Q
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772
Query: 162 GNLFNLQYLDLSIDTHNPISFSFLYLENF-SWLSGLSLLKHLDLTGVDLSTASDWFLVTN 220
N L+ + H + L + + ++ L L + D+ +
Sbjct: 773 LNSSQLKAFGIR---HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-----VDEK 824
Query: 221 MLPSLQVLKLSACSLHNSLPELPI---ANFSSLYTLDLSYNE 259
+ P L +L ++ N + + + L Y++
Sbjct: 825 LTPQLYILDIA----DNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 4e-47
Identities = 84/456 (18%), Positives = 151/456 (33%), Gaps = 47/456 (10%)
Query: 103 KLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162
LI +L K L +L ++ + L +L + L ++ + +
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 222
L+ LD +N + +L E+ S L + L L+L G D++
Sbjct: 151 PTEKLKVLDFQ---NN--AIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAF---DS 201
Query: 223 PSLQVLKLSACSLH-NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS--HLVFLD 279
Q L L + SL+ + + P+ GL + ++
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-EDISPAVFEGLCEMSVESIN 260
Query: 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS 339
L + F + + L+ LDL + +S +P+ L + L+ L L N+ + +
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDL-TATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319
Query: 340 V------LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD--GQIPAELCRLTSLH 391
L I N + E L L L + + +L L+ L
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379
Query: 392 ILDLSHNNFSGTLPRCINNLTAMMN---QENSMETDKEYDTFTIELSILVVMKGRELAYN 448
L+LS+N + ++ F
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF------------------ 421
Query: 449 TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA---MRSLESI 505
L L++ ++LS + L + L ALQ LNL N + + + LE +
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481
Query: 506 DFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
S LS + +SL ++H++LS N LT
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 2e-44
Identities = 83/463 (17%), Positives = 147/463 (31%), Gaps = 72/463 (15%)
Query: 108 INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167
L + K L L L +N+ + ++P L+ +D + + + +L
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQA 179
Query: 168 QYLDLSIDTHNPISFSFLYLENFSWLSGLSL--------------------LKHLDLTGV 207
L L+++ N I+ + + L+ L +
Sbjct: 180 TNLSLNLN-GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 208 DLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPS 267
D S S++ + L N FS L LDL+ + +PS
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHL--SELPS 295
Query: 268 WLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYL 326
L GLS L L L N F N SL HL ++ N + T L L L
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
Query: 327 SLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELC 385
L + ++ D L +L L L N+
Sbjct: 356 DLSHDDIETS--------DCCNLQLRN----------LSHLQSLNLSYNEPLSLKTEAFK 397
Query: 386 RLTSLHILDLSHNNFSGTLP----RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMK 441
L +LDL+ + ++ L + + + F L L +
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFD-GLPALQHL- 454
Query: 442 GRELAYNTMLKLVRCMDLSGNNLSGDI---PEEMTNLLALQSLNLSHNFLAGKIPENVGA 498
+L GN+ + L L+ L LS L+ +
Sbjct: 455 ----------------NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
Query: 499 MRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
++ + +D S N L+ +++S L + +LNL+ N+++ +P
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 2e-43
Identities = 79/446 (17%), Positives = 139/446 (31%), Gaps = 73/446 (16%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174
L+ S N Q F + +L +DL+R ++ + + L L L+
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT- 89
Query: 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234
NP+ F + LSG LKHL +S+ L +L+ L L +
Sbjct: 90 --ANPLIFM-----AETALSGPKALKHLFFIQTGISSIDFIPLHN--QKTLESLYLGSNH 140
Query: 235 LHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL--VFLDLGFNSFGGPIPDG 292
+ S+ L LD N + L + L + L+L N G I G
Sbjct: 141 IS-SIKLPKGFPTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPG 197
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLH--KFTRLEYLSLRENRL--------QGMISSVLV 342
+ + L+ + I L L + + +G+ +
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257
Query: 343 VFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFS 401
++ ++ F L L L + ++P+ L L++L L LS N F
Sbjct: 258 SINLQKHYFFNISSNTFHC--FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFE 314
Query: 402 GTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSG 461
+N L+ L + G
Sbjct: 315 NLCQISASNFP--------------------SLTHL--------------------SIKG 334
Query: 462 NNLSGDIPEEM-TNLLALQSLNLSHNFLA--GKIPENVGAMRSLESIDFSGNLLSGRIPQ 518
N ++ NL L+ L+LSH+ + + + L+S++ S N +
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 519 SISSLTFLSHLNLSDNNLTGKIPLGT 544
+ L L+L+ L K
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQSP 420
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 7e-43
Identities = 76/435 (17%), Positives = 135/435 (31%), Gaps = 72/435 (16%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
+ N N+IP S ++ S L + L NL +LDL+ I
Sbjct: 17 YNCENLGL--NEIP--GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT---RCQI 69
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSL 239
+ + + L L LT L A + +L+ L + +S+
Sbjct: 70 YW----IHEDT-FQSQHRLDTLVLTANPLIFMAETAL---SGPKALKHLFFIQTGI-SSI 120
Query: 240 PELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSL 299
+P+ N +L +L L N +++ F L LD N+ + + +L
Sbjct: 121 DFIPLHNQKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179
Query: 300 EHLDLR-SNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS--------SVLVVFDIGENG 350
+L L + N I+ I + L+ + +I L + +
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239
Query: 351 FSGNIPAWI-GEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN 409
PA G + + L+ + F + L LDL+ + S LP +
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298
Query: 410 NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIP 469
L+ L L LS N
Sbjct: 299 GLST--------------------LKKL--------------------VLSANKFENLCQ 318
Query: 470 EEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLL--SGRIPQSISSLTFL 526
+N +L L++ N ++ + +L +D S + + S + +L+ L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378
Query: 527 SHLNLSDNNLTGKIP 541
LNLS N
Sbjct: 379 QSLNLSYNEPLSLKT 393
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-40
Identities = 92/450 (20%), Positives = 155/450 (34%), Gaps = 75/450 (16%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGF-MGSLRHIDLSRAELTGMIPHQLGN 163
I I P D L+ + SL + + P
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 164 LF--NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM 221
L +++ ++L + + + S L+ LDLT LS
Sbjct: 251 LCEMSVESINLQ---KHYFFNI-----SSNTFHCFSGLQELDLTATHLSELPSGL---VG 299
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
L +L+ L LSA +L ++ +NF SL L + N L L L +L LDL
Sbjct: 300 LSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358
Query: 282 FN--SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS 339
+ L+NL+ L+ L+L N +S + +LE L L RL+ +
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA- 417
Query: 340 VLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHN 398
++ F L L +L L + D L +L L+L N
Sbjct: 418 --------QSPFQN----------LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 399 NFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN---------- 448
+F + N+L + L IL L++
Sbjct: 460 HFPKGNIQKTNSLQTLGR-----------------LEIL------VLSFCDLSSIDQHAF 496
Query: 449 TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFS 508
T LK++ +DLS N L+ E +++L + LNL+ N ++ +P + + +I+
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLR 555
Query: 509 GNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538
N L + S++ FL + L
Sbjct: 556 QNPLDC----TCSNIYFLEWYKENMQKLED 581
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 6e-38
Identities = 62/355 (17%), Positives = 106/355 (29%), Gaps = 34/355 (9%)
Query: 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP---IANFSSLYTLDLS 256
K + + L+ + + S + L+ S N LP + + +L LDL+
Sbjct: 15 KTYNCENLGLNE-----IPGTLPNSTECLEFS----FNVLPTIQNTTFSRLINLTFLDLT 65
Query: 257 YNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTW 316
+ + L L L N L +L+HL S
Sbjct: 66 RCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124
Query: 317 LHKFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWIGE-KLLRNLIL 369
LH LE L L N + + L V D N + + NL L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184
Query: 370 RLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDT 429
L N I L+ + + + N T + E + D
Sbjct: 185 NLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 430 FTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLA 489
L M + +L + LQ L+L+ L+
Sbjct: 244 SPAVFEGLCEMSVESI------------NLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291
Query: 490 GKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544
++P + + +L+ + S N S S+ L+HL++ N ++ G
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 5e-20
Identities = 37/208 (17%), Positives = 67/208 (32%), Gaps = 36/208 (17%)
Query: 103 KLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162
+ + + + L LDL+ + + L+ ++LS + L
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 163 NLFNLQYLDLSIDTHNPIS-FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM 221
L LQ+L+L N + + L
Sbjct: 447 GLPALQHLNLQ---GNHFPKGNIQKTNSLQTLG--------------------------- 476
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
L++L LS C L S+ + + + +DLS+N + L L + L+L
Sbjct: 477 --RLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRL-TSSSIEALSHLKGIY-LNLA 531
Query: 282 FNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
N +P L L+ ++LR N
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 6e-12
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 43/176 (24%)
Query: 366 NLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDK 425
N + + +IP L S L+ S N + L
Sbjct: 14 NKTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLI------------- 57
Query: 426 EYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSH 485
L+ L DL+ + + + L +L L+
Sbjct: 58 -------NLTFL--------------------DLTRCQIYWIHEDTFQSQHRLDTLVLTA 90
Query: 486 NFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
N L + ++L+ + F +S + + L L L N+++
Sbjct: 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 102 SKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQL 161
K + SL L L L LS + + + + H+DLS LT L
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Query: 162 GNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTG 206
+L + YL+L+ N IS S L LS + ++L
Sbjct: 521 SHLKGI-YLNLA---SNHISI-----ILPSLLPILSQQRTINLRQ 556
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 3e-44
Identities = 82/443 (18%), Positives = 132/443 (29%), Gaps = 87/443 (19%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMI------P 158
I I L L L N +N + L + L L E P
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252
Query: 159 HQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLV 218
+ L ++ + + T+ + L+ + + L GV + D
Sbjct: 253 SIMEGLCDVTIDEFRL-TYTNDFSD-----DIVKFHCLANVSAMSLAGVSIKYLEDVP-- 304
Query: 219 TNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278
Q L + L + P + L +L L+ N+ + L L +L
Sbjct: 305 --KHFKWQSLSII----RCQLKQFPTLDLPFLKSLTLTMNKGS---ISFKKVALPSLSYL 355
Query: 279 DLGFNSFGGPIPDGLQNL--TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
DL N+ +L SL HLDL S N + L++L + + L+ +
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDL-SFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414
Query: 337 ISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDL 395
+ F L L L + LTSL+ L +
Sbjct: 415 TEF---------SAFLS----------LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 396 SHNNFSGTLPRCI-NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLV 454
+ N+F + N T L+ L
Sbjct: 456 AGNSFKDNTLSNVFANTTN--------------------LTFL----------------- 478
Query: 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSG 514
DLS L L LQ LN+SHN L + + SL ++D S N +
Sbjct: 479 ---DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 515 RIPQSISSLTFLSHLNLSDNNLT 537
L+ NL++N++
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-40
Identities = 81/452 (17%), Positives = 146/452 (32%), Gaps = 51/452 (11%)
Query: 108 INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167
+ + L L L++++N + ++P + + +L H+DLS + + + L L
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179
Query: 168 QYLDLSID-THNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 226
++LS+D + NPI F G+ L L L G S+ + N L L
Sbjct: 180 PQVNLSLDMSLNPIDFI-----QDQAFQGIK-LHELTLRGNFNSSNIMKTCLQN-LAGLH 232
Query: 227 VLKLSACSL--HNSLPELPIANFSSLY-----TLDLSYNEFDNTLVPSWLFGLSHLVFLD 279
V +L +L + L L+Y + L+++ +
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND-FSDDIVKFHCLANVSAMS 291
Query: 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS 339
L S + + + L + + PT L+ L+L N+
Sbjct: 292 LAGVSIKY--LEDVPKHFKWQSLSI-IRCQLKQFPT--LDLPFLKSLTLTMNKGSISFKK 346
Query: 340 V----LVVFDIGENGFSGNIP-AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILD 394
V L D+ N S + ++ L L N + A L L LD
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD 405
Query: 395 LSHNNFSGTLPR----CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTM 450
H+ + L + + + D F L+ L
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-FDGIFL-GLTSLNT----------- 452
Query: 451 LKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSG 509
+ ++GN+ + + N L L+LS L + L+ ++ S
Sbjct: 453 ------LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506
Query: 510 NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
N L + L LS L+ S N +
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 5e-40
Identities = 93/461 (20%), Positives = 163/461 (35%), Gaps = 65/461 (14%)
Query: 106 GKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLF 165
G +NP + + ++ + +++P + S ++IDLS L + + N
Sbjct: 2 GSLNPCIEVVPNIT-YQCMDQKL--SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFS 56
Query: 166 NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPS 224
LQ+LDLS I +E+ + GL L +L LTG + + + F + L S
Sbjct: 57 ELQWLDLS---RCEIET----IEDKA-WHGLHHLSNLILTGNPIQSFSPGSF---SGLTS 105
Query: 225 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS 284
L+ L L SL PI +L L++++N + +P++ L++LV +DL +N
Sbjct: 106 LENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 285 FGGPIPDGLQNLTSLEHLDLR---SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV- 340
+ LQ L ++L S N I I + +L L+LR N I
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Query: 341 ------LVVFDIGENGFSGNIPAWI-------GEKLLRNLILRLRSNKFDGQIPAELCRL 387
L V + F I G + RL + L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284
Query: 388 TSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVV--MKGREL 445
++ + L+ + E + L + + ++
Sbjct: 285 ANVSAMSLAGVSIKYL----------------------EDVPKHFKWQSLSIIRCQLKQF 322
Query: 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV--GAMRSLE 503
+ L + + L+ N S I + L +L L+LS N L+ + SL
Sbjct: 323 PTLDLPFL-KSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379
Query: 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544
+D S N + + L L HL+ + L
Sbjct: 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-39
Identities = 82/450 (18%), Positives = 149/450 (33%), Gaps = 53/450 (11%)
Query: 108 INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167
+ + L HL L L+ N ++ F G + SL ++ +L + +G L L
Sbjct: 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITL 130
Query: 168 QYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFL--VTNMLPSL 225
+ L+++ HN I + ++ S L+ L H+DL+ + T + L +
Sbjct: 131 KKLNVA---HNFIH----SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 226 QVLKLSACSLHNSLPELPIANFS--SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
L +S N + + F L+ L L N + ++ + L L+ L L
Sbjct: 184 LSLDMS----LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 284 SFGG------PIPDGLQNLTSL--EHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335
F P ++ L + + L N S H + +SL ++
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299
Query: 336 MISSV----LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSL 390
+ I L L L L NK I + L SL
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLD-----LPFLKSLTLTMNKGS--ISFKKVALPSL 352
Query: 391 HILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTM 450
LDLS N S + ++L + + ++
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS------------FNGAIIMSANFMGLEE 400
Query: 451 LKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSG 509
L+ + D + L +L L L++S+ + SL ++ +G
Sbjct: 401 LQHL---DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Query: 510 NLLSGRIPQSI-SSLTFLSHLNLSDNNLTG 538
N ++ ++ T L+ L+LS L
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-34
Identities = 55/316 (17%), Positives = 108/316 (34%), Gaps = 28/316 (8%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153
++++ + L ++ + L+ + + + + + + R +L
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQL 319
Query: 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTAS 213
+L L+ L L+ N S SF L L +LDL+ LS +
Sbjct: 320 KQFPT---LDLPFLKSLTLT---MNKGSISF-------KKVALPSLSYLDLSRNALSFSG 366
Query: 214 DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273
SL+ L LS + L LD ++ S L
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENR 332
L++LD+ + + LTSL L + N+F + + T L +L L + +
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 333 LQGMISSV------LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELC 385
L+ + V L + ++ N + + L +L L N+ +
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ--LYSLSTLDCSFNRIETSKGILQH 542
Query: 386 RLTSLHILDLSHNNFS 401
SL +L++N+ +
Sbjct: 543 FPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-24
Identities = 48/209 (22%), Positives = 72/209 (34%), Gaps = 14/209 (6%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQ-LGN 163
G + S L L +LDLS N + + L+H+D + L + +
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
L L YLD+S + F + GL+ L L + G + + N
Sbjct: 423 LEKLLYLDIS---YTNTKIDFDGI-----FLGLTSLNTLKMAGNSFKDNTLSNVFAN-TT 473
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
+L L LS C L + L L++S+N L S L L LD FN
Sbjct: 474 NLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFN 531
Query: 284 SFGGPIPDGLQNLTSLEHLDLRSNNFISS 312
SL +L +N+
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVACI 560
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-37
Identities = 87/435 (20%), Positives = 166/435 (38%), Gaps = 102/435 (23%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
I +I P DL + L + + V + S+ + ++ ++ + + L
Sbjct: 12 INQIFP-DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVASIQG--IEYL 65
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
NL+YL+L+ N I+ + S LS L L +L + ++ S L +
Sbjct: 66 TNLEYLNLN---GNQIT-------DISPLSNLVKLTNLYIGTNKITDISAL----QNLTN 111
Query: 225 LQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
L+ L L+ +++ ++ P+AN + +Y+L+L N N S L ++ L +L + +
Sbjct: 112 LRELYLN----EDNISDISPLANLTKMYSLNLGANH--NLSDLSPLSNMTGLNYLTVTES 165
Query: 284 SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVV 343
P + NLT L L L + N I I L T L Y + N++ +
Sbjct: 166 KVKDVTP--IANLTDLYSLSL-NYNQIEDISP-LASLTSLHYFTAYVNQITDITP----- 216
Query: 344 FDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG 402
+ + L L++ +NK P L L+ L L++ N S
Sbjct: 217 -------VAN----------MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257
Query: 403 TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGN 462
IN + + L +L ++ N
Sbjct: 258 -----INAVKDLTK-----------------LKML--------------------NVGSN 275
Query: 463 NLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISS 522
+S + NL L SL L++N L + E +G + +L ++ S N ++ P ++S
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331
Query: 523 LTFLSHLNLSDNNLT 537
L+ + + ++ +
Sbjct: 332 LSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 59/339 (17%), Positives = 116/339 (34%), Gaps = 72/339 (21%)
Query: 222 LPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
L L S+ ++ S+ L ++ + + + L++L +L+L
Sbjct: 21 LAEGIRAVLQ----KASVTDVVTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNL 73
Query: 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS-- 338
N P L NL L +L + +N I+ I L T L L L E+ + +
Sbjct: 74 NGNQITDISP--LSNLVKLTNLYIGTNK-ITDISA-LQNLTNLRELYLNEDNISDISPLA 129
Query: 339 --SVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDL 395
+ + ++G N ++ + + L L + +K P + LT L+ L L
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP-LSN--MTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184
Query: 396 SHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVR 455
++N I+ L ++ + L
Sbjct: 185 NYNQIED-----ISPLASLTS-----------------LHYF------------------ 204
Query: 456 CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515
N ++ P + N+ L SL + +N + + + L ++ N +S
Sbjct: 205 --TAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD- 257
Query: 516 IPQSISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNAS 552
++ LT L LN+ N ++ L +QL +
Sbjct: 258 -INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLN 295
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 59/310 (19%), Positives = 108/310 (34%), Gaps = 67/310 (21%)
Query: 250 LYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF 309
TL + L+ + L S + + L S+ L +
Sbjct: 2 AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK- 55
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMIS----SVLVVFDIGENGFSGNIPAWIGEKLLR 365
++SI + T LEYL+L N++ + L IG N + +I A L
Sbjct: 56 VASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISALQN---LT 110
Query: 366 NL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETD 424
NL L L + P L LT ++ L+L N+ + ++N+T
Sbjct: 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTG----------- 156
Query: 425 KEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLS 484
L+ L ++ + + + NL L SL+L+
Sbjct: 157 ---------LNYL--------------------TVTESKVKD--VTPIANLTDLYSLSLN 185
Query: 485 HNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG- 543
+N + + ++ SL N ++ P ++++T L+ L + +N +T PL
Sbjct: 186 YNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLAN 241
Query: 544 -TQLQGFNAS 552
+QL
Sbjct: 242 LSQLTWLEIG 251
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 9e-36
Identities = 102/541 (18%), Positives = 187/541 (34%), Gaps = 52/541 (9%)
Query: 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGF-MGSLRHIDLSRAELTGMIPHQLGNLF 165
++PS L L +D S+N +L L+ L + G
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 166 N------LQYLDLSIDTHNPIS-------FSFLYLENFSWLSGLSLLKHLDLTGVDLSTA 212
N L+ LD+S N + + + L + ++
Sbjct: 199 NPFRNMVLEILDVS---GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255
Query: 213 SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272
S++ L LS + SL L L+L+YN+ N + +GL
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGL 313
Query: 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332
+L L+L +N G L + ++DL+ N+ +L+ L LR+N
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 333 LQ--GMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG-QIPAELCRLTS 389
L I S+ +F SGN + + L ++ L N+ + I L R+
Sbjct: 374 LTTIHFIPSIPDIF------LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427
Query: 390 LHILDLSHNNFSGTLPRCI----NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGREL 445
L IL L+ N FS +L + EN ++L+ +
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM-----------LQLAWETELCWDVF 476
Query: 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESI 505
+ L++ + L+ N L+ P ++L AL+ L+L+ N L + N +LE +
Sbjct: 477 EGLSHLQV---LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEIL 531
Query: 506 DFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPLP 565
D S N L P LS L+++ N + L T + N +
Sbjct: 532 DISRNQLLAPNPD---VFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYC 588
Query: 566 KNCTD-QNVPIPAENENGSEDEDEMGYWLYVSTAFGFVVGFWCVIGPLLINRRWRYKYCH 624
V + + + G ++E+ + + V ++ L + + + +
Sbjct: 589 VYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFIC 648
Query: 625 F 625
+
Sbjct: 649 Y 649
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 1e-35
Identities = 92/491 (18%), Positives = 167/491 (34%), Gaps = 67/491 (13%)
Query: 105 IGKINPSLL-DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I + S L+ L L+L + + +LR +DL +++ + P
Sbjct: 36 IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWL----------------------SGLSLLKH 201
LF+L L L +S + L F L L+ LK
Sbjct: 96 LFHLFELRLY---FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152
Query: 202 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS-----SLYTLDLS 256
+D + + + L +L L+A SL++ + + L LD+S
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212
Query: 257 YNEFD-----------NTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL--TSLEHLD 303
N + + L H++ GF++ P + L +S+ HLD
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272
Query: 304 LRSNNFISSI-PTWLHKFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIP 356
L S+ F+ S+ L+ L+L N++ + L V ++ N +
Sbjct: 273 L-SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELY 330
Query: 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG-TLPRCINNLTAMM 415
+ L + + L+ N L L LDL N + I ++
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTM---LKLVRCMDLSGNNLSGDIPEEM 472
N+ ++ T L L + L + ++ + L+ N S ++
Sbjct: 391 NKLVTLPK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446
Query: 473 -TNLLALQSLNLSHNFLAGKIPENVGA-----MRSLESIDFSGNLLSGRIPQSISSLTFL 526
+ +L+ L L N L + + L+ + + N L+ P S LT L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506
Query: 527 SHLNLSDNNLT 537
L+L+ N LT
Sbjct: 507 RGLSLNSNRLT 517
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-33
Identities = 86/439 (19%), Positives = 135/439 (30%), Gaps = 63/439 (14%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
N Q+P L + + LS + + L LQ L+L
Sbjct: 9 AFYRFCNL--TQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELG---SQYT 60
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHN-S 238
+ + L L+ LDL + D F L L L+L C L +
Sbjct: 61 PLTI----DKEAFRNLPNLRILDLGSSKIYFLHPDAF---QGLFHLFELRLYFCGLSDAV 113
Query: 239 LPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLT- 297
L + N +L LDLS N+ + + L+ L +D N L+ L
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Query: 298 -SLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355
+L L +N+ S + W + L + G +V + +
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 356 PAWIGEKLLRNLILRLRS-NKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414
+ I + + D A L R +S+ LDLSH R L
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKD- 291
Query: 415 MNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTN 474
++ ++L+ N ++ E
Sbjct: 292 ---------------------------------------LKVLNLAYNKINKIADEAFYG 312
Query: 475 LLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534
L LQ LNLS+N L N + + ID N ++ Q+ L L L+L DN
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Query: 535 NLTGKIPLGTQLQGFNASC 553
LT I + S
Sbjct: 373 ALT-TIHFIPSIPDIFLSG 390
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 6e-20
Identities = 48/306 (15%), Positives = 85/306 (27%), Gaps = 22/306 (7%)
Query: 248 SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN 307
+ VP L+ L L FN L L+ L+L S
Sbjct: 4 FDGRIAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58
Query: 308 NFISSI-PTWLHKFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWIG 360
+I L L L +++ + L + G S +
Sbjct: 59 YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118
Query: 361 EKLLRNL-ILRLRSNKFDG-QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQE 418
+ L+ L L L N+ + +L SL +D S N + L
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 419 NSME----TDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTN 474
S+ + + ++ M L + V N +S +
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238
Query: 475 LLALQSLNLSHNFLAGKIPENV---GAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNL 531
+ + + +N A S+ +D S + + +L L LNL
Sbjct: 239 AHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 532 SDNNLT 537
+ N +
Sbjct: 298 AYNKIN 303
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 2e-35
Identities = 79/426 (18%), Positives = 143/426 (33%), Gaps = 34/426 (7%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT 176
+ LDLS N +L+ + L + + + +L +L++LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS--- 82
Query: 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236
N +S + SW LS LK+L+L G T L N L +LQ L++
Sbjct: 83 DNHLSS-----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETF 136
Query: 237 NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296
+ + + A +SL L++ L + + L L + + L
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195
Query: 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIP 356
+S+ +L+LR N + L + R +
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN 416
+ N + ++ D ++ L + L + L +
Sbjct: 256 VEF-DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK- 313
Query: 417 QENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT--- 473
T+E S + ++ + L+ +DLS N + + +
Sbjct: 314 ------------RITVENSKVFLVPCSFSQHLKSLEF---LDLSENLMVEEYLKNSACKG 358
Query: 474 NLLALQSLNLSHNFLA--GKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNL 531
+LQ+L LS N L K E + +++L S+D S N +P S + LNL
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417
Query: 532 SDNNLT 537
S +
Sbjct: 418 SSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 6e-30
Identities = 74/466 (15%), Positives = 147/466 (31%), Gaps = 76/466 (16%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQ-LG 162
+ ++ S L L YL+L N ++ + + +L+ + + E I
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 222
L +L L++ + ++ L + + HL L + + + F ++L
Sbjct: 146 GLTSLNELEIK---ALSLR----NYQS-QSLKSIRDIHHLTLHLSESAFLLEIFA--DIL 195
Query: 223 PSLQVLKLSACSL--HNSLPELPIANFSSLYTLDLSYNEFDN------TLVPSWLFGLSH 274
S++ L+L +L P S + L + + + ++ LS
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 275 LVFLDLGFNSFGGPIPDGLQ--------NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326
+ F D N G P ++ L + + T +++ +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315
Query: 327 SLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF---DGQIPAE 383
++ +++ +P + L L L N + A
Sbjct: 316 TVENSKVF-------------------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356
Query: 384 LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN------QENSMETDKEYDTFTIELSIL 437
SL L LS N+ ++ + L + N N+ + + ++ L
Sbjct: 357 KGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415
Query: 438 VVMKGRELAYNTMLKLVRC-------MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
L+ + + C +D+S NNL + LQ L +S N L
Sbjct: 416 ------NLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK- 464
Query: 491 KIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536
+P+ L + S N L LT L + L N
Sbjct: 465 TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 8e-27
Identities = 77/435 (17%), Positives = 145/435 (33%), Gaps = 85/435 (19%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
D + +F IP G +++ +DLS ++T + L NLQ L L + I
Sbjct: 10 CDGRSRSF--TSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK---SSRI 62
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSL 239
+ +E + L L+HLDL+ LS+ +S WF L SL+ L L
Sbjct: 63 NT----IEGDA-FYSLGSLEHLDLSDNHLSSLSSSWF---GPLSSLKYLNLMGNPYQTLG 114
Query: 240 PELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSL 299
N ++L TL + E + + GL+ L L++ S L+++ +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174
Query: 300 EHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWI 359
HL L + + + + + YL LR+ L S L V ++
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP---------- 224
Query: 360 GEKLLRNLILRLRSNKFDG--QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQ 417
K L L F+ ++ + L+ + D + N P + ++
Sbjct: 225 -MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS----- 278
Query: 418 ENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLA 477
EL + + R + + L D+ + L
Sbjct: 279 --------------------------ELGKVETVTI-RRLHIPQFYLFYDLSTVYSLLEK 311
Query: 478 LQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
++ + + ++ + + L L L+LS+N +
Sbjct: 312 VKRITVENSKV-----------FLVPCSFSQH-------------LKSLEFLDLSENLMV 347
Query: 538 GKIPLGTQLQGFNAS 552
+ + +G S
Sbjct: 348 EEYLKNSACKGAWPS 362
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 40/245 (16%), Positives = 79/245 (32%), Gaps = 32/245 (13%)
Query: 109 NPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQ 168
++ + L + + V+ ++ I + +++ + +L +L+
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKVFLVPCSFSQHLKSLE 337
Query: 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 228
+LDLS N + YL+N + L+ L L+ L + + L +L L
Sbjct: 338 FLDLS---ENLMVE--EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392
Query: 229 KLSACSL-------------------HNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWL 269
+S + + + +L LD+S N D+
Sbjct: 393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS--FSL-- 448
Query: 270 FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLR 329
L L L + N +PD L + + N S + T L+ + L
Sbjct: 449 -FLPRLQELYISRNKLKT-LPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505
Query: 330 ENRLQ 334
N
Sbjct: 506 TNPWD 510
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-35
Identities = 68/438 (15%), Positives = 133/438 (30%), Gaps = 66/438 (15%)
Query: 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDL 172
+ +++++ + + +++ +DLS L+ + L L+ L+L
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 173 SIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 232
S N + L LS L+ LDL + PS++ L +
Sbjct: 66 S---SNVLY-------ETLDLESLSTLRTLDLNNNYVQELLV-------GPSIETLHAA- 107
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG-PIPD 291
+N++ + + + L+ N+ L S + +LDL N +
Sbjct: 108 ---NNNISRVSCSRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163
Query: 292 GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351
+ +LEHL+L NFI + + F +L+ L L N+L
Sbjct: 164 LAASSDTLEHLNL-QYNFIYDVKGQVV-FAKLKTLDLSSNKLA----------------- 204
Query: 352 SGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINN 410
+ + + LR+NK I L +L DL N F + +
Sbjct: 205 --FMGPEFQS--AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG---TLRD 256
Query: 411 LTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE 470
+ + T+ + + G+ T+ L +L +
Sbjct: 257 FFSKNQRVQ-----------TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305
Query: 471 EMTNL--LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSH 528
+ L L+ + ++ ID I Q
Sbjct: 306 RLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364
Query: 529 LNLSDNNLTGKIPLGTQL 546
L L ++ G +
Sbjct: 365 LEQKKKALDEQVSNGRRA 382
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 50/302 (16%), Positives = 91/302 (30%), Gaps = 54/302 (17%)
Query: 238 SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLT 297
++ E+ N + ++ + + S ++ LDL N L T
Sbjct: 1 AIHEIK-QNGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 298 SLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM-ISSVLVVFDIGENGFSGNIP 356
LE L+L S+N + L + L L L N +Q + + + N S +
Sbjct: 59 KLELLNL-SSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVS 115
Query: 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG-TLPRCINNLTAMM 415
G+ + L +NK + + + LDL N + +
Sbjct: 116 CSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL- 171
Query: 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNL 475
L +L N + D+ +
Sbjct: 172 ---------------------------EHL------------NLQYNFIY-DVKGQ-VVF 190
Query: 476 LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNN 535
L++L+LS N LA + + + I N L I +++ L H +L N
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 536 LT 537
Sbjct: 249 FH 250
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 33/290 (11%), Positives = 69/290 (23%), Gaps = 34/290 (11%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
+ YLDL N + +L H++L + + Q+ L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196
Query: 171 DLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
DLS N ++ ++ + + + L L +L+ L
Sbjct: 197 DLS---SNKLA----FMG--PEFQSAAGVTWISLRNNKLVLIEKAL---RFSQNLEHFDL 244
Query: 231 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP 290
H + + T+ + + + P
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304
Query: 291 DGLQNLTSLEHLDLR-SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGEN 349
D L L EH L + + R + + + +
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR--------------- 349
Query: 350 GFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNN 399
+ + + + L + D Q+ L
Sbjct: 350 ----TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 468 IPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527
I E N + ++ + L + + +++ +D SGN LS ++ T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 528 HLNLSDNNLTGKIPLG 543
LNLS N L + L
Sbjct: 62 LLNLSSNVLYETLDLE 77
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-34
Identities = 97/437 (22%), Positives = 169/437 (38%), Gaps = 47/437 (10%)
Query: 122 DLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181
NF +IP L S +++DLS L + + + LQ LDLS I
Sbjct: 13 QCMELNF--YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS---RCEIQ 65
Query: 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLP 240
+E+ + LS L L LTG + + A F + L SLQ L +L SL
Sbjct: 66 T----IEDGA-YQSLSHLSTLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLA-SLE 116
Query: 241 ELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLE 300
PI + +L L++++N + +P + L++L LDL N L+ L +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 301 HLDLR---SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPA 357
L+L S N ++ I K RL L+LR N + + G +G
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI------QGLAGLEVH 230
Query: 358 WIGEKLLR--NLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT----LPRCINNL 411
+ R + + + +G LC LT L++ ++ L C+ N+
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEG-----LCNLTIEE-FRLAYLDYYLDDIIDLFNCLTNV 284
Query: 412 TAMMNQENSMETDKEYDTFTIELSILVV--MKGRELAYNTMLKLVRCMDLSGNNLSGDIP 469
++ ++ + ++ L + K + + L + + + N
Sbjct: 285 SSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL-KRLTFTSNKGGNAFS 342
Query: 470 EEMTNLLALQSLNLSHNFLA--GKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527
E +L +L+ L+LS N L+ G ++ SL+ +D S N + + + L L
Sbjct: 343 E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399
Query: 528 HLNLSDNNLTGKIPLGT 544
HL+ +NL
Sbjct: 400 HLDFQHSNLKQMSEFSV 416
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-31
Identities = 85/442 (19%), Positives = 152/442 (34%), Gaps = 68/442 (15%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
+ LK L L++++N ++ ++P + + +L H+DLS ++ + L L + L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 171 DLSID-THNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
+LS+D + NP+ +F+ F + L L L S + L L+V +
Sbjct: 179 NLSLDLSLNPM--NFIQPGAFKEIR----LHKLTLRNNFDSLNVMKTCIQG-LAGLEVHR 231
Query: 230 LSACSL--HNSLPELPIANFSSLYTL-----DLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
L +L + + L L L+Y ++ + L+++ L
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 283 NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV-- 340
+ + D +HL+L N PT K L+ L+ N+ S V
Sbjct: 292 VTIER-VKDF-SYNFGWQHLEL-VNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDL 346
Query: 341 --LVVFDIGENGFSG-NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSH 397
L D+ NG S + L L N + + L L LD H
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 398 NNFSGTLPRCI-NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRC 456
+N + +L L L
Sbjct: 406 SNLKQMSEFSVFLSLR--------------------NLIYL------------------- 426
Query: 457 MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGR 515
D+S + L +L+ L ++ N ++ +R+L +D S L
Sbjct: 427 -DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 516 IPQSISSLTFLSHLNLSDNNLT 537
P + +SL+ L LN++ N L
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLK 507
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 5e-31
Identities = 79/453 (17%), Positives = 146/453 (32%), Gaps = 55/453 (12%)
Query: 109 NPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQ 168
+ S L LDLS + + + + L + L+ + + L +LQ
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 228
L ++ LEN + L LK L++ + + +N L +L+ L
Sbjct: 104 KLVAV---ETNLA----SLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHL 154
Query: 229 KLSACSLHNSLPELPIANFSSL-------YTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
LS N + + + L +LDLS N + F L L L
Sbjct: 155 DLS----SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLHKLTLR 208
Query: 282 FNSFGGPIPDG-LQNLTSLEHLDL-----RSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335
N + +Q L LE L R+ + L L++ E RL
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD--KSALEGLCNLTIEEFRLAY 266
Query: 336 MISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDL 395
L + + L+ I R++ ++ L +++
Sbjct: 267 -----LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG-------WQHLELVNC 314
Query: 396 SHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL------VVMKGRELAYNT 449
F + + LT N+ + + + L L + KG +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 450 MLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFS 508
++ +DLS N + + L L+ L+ H+ L +V ++R+L +D S
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 509 GNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
+ L+ L L ++ N+
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 81/442 (18%), Positives = 134/442 (30%), Gaps = 110/442 (24%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAE------LTGMIP 158
+ I P L L L NN N + + + L L E L
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 159 HQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLV 218
L L NL + + + + L + L+ + L V + D+
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDL-----FNCLTNVSSFSLVSVTIERVKDFS-- 301
Query: 219 TNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278
Q L+L ++ + P SL L + N+ N L L FL
Sbjct: 302 --YNFGWQHLEL----VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFL 352
Query: 279 DLGFN--SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
DL N SF G TSL++LDL S N + ++ + +LE+L + + L+ M
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 337 ISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLS 396
+ L +L LD+S
Sbjct: 412 SEFSV------------------------------------------FLSLRNLIYLDIS 429
Query: 397 HNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRC 456
H + N L++ L +L
Sbjct: 430 HTHTRVAFNGIFNGLSS--------------------LEVL------------------- 450
Query: 457 MDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSG 514
++GN+ + ++ T L L L+LS L ++ ++ SL+ ++ + N L
Sbjct: 451 -KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 515 RIPQSISSLTFLSHLNLSDNNL 536
LT L + L N
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-26
Identities = 53/303 (17%), Positives = 97/303 (32%), Gaps = 37/303 (12%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIP-HQLGNLFNLQYLDLSID 175
+ L+ ++ + I + ++ L + + +L+ ++
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317
Query: 176 THNPISFSFLY--------LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 227
+ L N L L+ LDL+ LS SL+
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377
Query: 228 LKLSACSLHNSLPELP--IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF 285
L LS N + + L LD ++ S L +L++LD+
Sbjct: 378 LDLS----FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 286 GGPIPDGLQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVLVVF 344
L+SLE L + N+F + + L +L L + +L+
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--------- 484
Query: 345 DIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403
+ F+ L +L +L + SN+ RLTSL + L N + +
Sbjct: 485 -LSPTAFNS----------LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
Query: 404 LPR 406
PR
Sbjct: 534 CPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 60/224 (26%), Positives = 89/224 (39%), Gaps = 16/224 (7%)
Query: 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT--GMIPHQLGNLFNLQYL 170
L LK L L ++N N + + SL +DLSR L+ G +L+YL
Sbjct: 322 LKLKSLKRLTFTSNKGGN--AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 171 DLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
DLS N + S GL L+HLD +L S++ + + L +L L +
Sbjct: 379 DLS---FNGVI------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDI 428
Query: 231 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP 290
S SSL L ++ N F +P L +L FLDL P
Sbjct: 429 SHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
+L+SL+ L++ SN S + T L+ + L N
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 57/255 (22%), Positives = 97/255 (38%), Gaps = 25/255 (9%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
+L+L N F Q P + SL+ + + + +L +L++
Sbjct: 298 KDFSYNFGWQHLELVNCKF--GQFP--TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEF 351
Query: 170 LDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
LDLS N +SF ++ G + LK+LDL+ + T S FL L L+ L
Sbjct: 352 LDLS---RNGLSFKGCCSQSDF---GTTSLKYLDLSFNGVITMSSNFL---GLEQLEHLD 402
Query: 230 LSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPI 289
+L + +L LD+S+ GLS L L + NSF
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 290 PDG-LQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGMISSV------L 341
L +L LDL S + + T + + L+ L++ N+L+ + + L
Sbjct: 462 LPDIFTELRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 342 VVFDIGENGFSGNIP 356
+ N + + P
Sbjct: 521 QKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
+ ++ + L L+ L +LD ++N + + +L ++D+S L
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
+L+ L ++ N +FL + L L LDL+ L S N L S
Sbjct: 445 SSLEVLKMA---GNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSS 495
Query: 225 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261
LQVL +++ L S+P+ +SL + L N +D
Sbjct: 496 LQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 8e-09
Identities = 32/185 (17%), Positives = 50/185 (27%), Gaps = 44/185 (23%)
Query: 364 LRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423
+ N+ + F +IP L S LDLS N +
Sbjct: 7 VPNITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFP----------- 52
Query: 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNL 483
EL +L DLS + +L L +L L
Sbjct: 53 ---------ELQVL--------------------DLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 484 SHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543
+ N + + SL+ + L+ I L L LN++ N + L
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLP 142
Query: 544 TQLQG 548
Sbjct: 143 EYFSN 147
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 50/393 (12%), Positives = 104/393 (26%), Gaps = 90/393 (22%)
Query: 142 SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKH 201
++ + L D + + + + +
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNR------------WHSAWRQANSNNPQI 60
Query: 202 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261
TG L +D P L+L + L P+ S L + +
Sbjct: 61 ETRTGRALKATADLLEDATQ-PGRVALELRSVPLP-QFPD-QAFRLSHLQHMTIDAAGL- 116
Query: 262 NTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP------- 314
+P + + L L L N +P + +L L L +R+ ++ +P
Sbjct: 117 -MELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 315 --TWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRL 371
L+ L L ++ ++PA I L+NL L++
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-------------------SLPASIAN--LQNLKSLKI 213
Query: 372 RSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431
R++ + + L L LDL P +
Sbjct: 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL----------------- 255
Query: 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGK 491
+ + L + +P ++ L L+ L+L +
Sbjct: 256 -----------------------KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 492 IPENVGAMRSLESIDFSGNLLSGRIPQSISSLT 524
+P + + + I +L + +
Sbjct: 293 LPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 43/319 (13%), Positives = 89/319 (27%), Gaps = 70/319 (21%)
Query: 222 LPSLQVLKLSACSLHNSLPELP--IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD 279
+ L +L ++ + Y D + ++
Sbjct: 11 SSGRENLYFQGS---TALRPYHDVLSQWQRHYNADRNRWHS-----AWRQANSNNPQIET 62
Query: 280 LGFNSFGGPIPDGLQNLTS--LEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI 337
+ D L++ T L+L + + P + + L+++++ L
Sbjct: 63 RTGRALKA-TADLLEDATQPGRVALEL-RSVPLPQFPDQAFRLSHLQHMTIDAAGLM--- 117
Query: 338 SSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLS 396
+P + + L L L N +PA + L L L +
Sbjct: 118 ----------------ELPDTMQQ--FAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158
Query: 397 HNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRC 456
LP + + A + L ++
Sbjct: 159 ACPELTELPEPLASTDASGEHQG-------------------------------LVNLQS 187
Query: 457 MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRI 516
+ L + +P + NL L+SL + ++ L+ + + + LE +D G
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 517 PQSISSLTFLSHLNLSDNN 535
P L L L D +
Sbjct: 246 PPIFGGRAPLKRLILKDCS 264
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 50/308 (16%), Positives = 95/308 (30%), Gaps = 50/308 (16%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
+ + + + + ++L L P Q L +LQ++
Sbjct: 51 RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM 109
Query: 171 DLSIDTHNPISFSFLYLENF-SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
+ L + + L+ L L L L L+ L
Sbjct: 110 TID---AA-------GLMELPDTMQQFAGLETLTLARNPLRALPASI---ASLNRLRELS 156
Query: 230 LSACSLHNSLPE--------LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
+ AC LPE +L +L L + +P+ + L +L L +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIR 214
Query: 282 FNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE-NRLQGMISSV 340
+ + + +L LE LDLR + + P L+ L L++ + L
Sbjct: 215 NSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL------ 267
Query: 341 LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNN 399
+P I L L L LR ++P+ + +L + I+ + +
Sbjct: 268 -------------TLPLDIHR--LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PH 311
Query: 400 FSGTLPRC 407
L +
Sbjct: 312 LQAQLDQH 319
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 4e-22
Identities = 40/287 (13%), Positives = 80/287 (27%), Gaps = 68/287 (23%)
Query: 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
S L ++ P D L + D + + +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGR 66
Query: 332 RLQGMISSV-------LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAE 383
L+ + V ++ P L +L + + + ++P
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR--LSHLQHMTIDAAGLM-ELPDT 122
Query: 384 LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGR 443
+ + L L L+ N LP I +L +
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRL----------------------------- 152
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLA---------LQSLNLSHNFLAGKIPE 494
R + + ++PE + + A LQSL L + +P
Sbjct: 153 -----------RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200
Query: 495 NVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
++ +++L+S+ + LS + +I L L L+L P
Sbjct: 201 SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP 246
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 5e-33
Identities = 106/486 (21%), Positives = 178/486 (36%), Gaps = 98/486 (20%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
I +I L + L N + V + + + R + + + L
Sbjct: 14 INQIFT-DTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSIDG--VEYL 67
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
NL ++ S +N ++ + + L L+ L + + ++ + L +
Sbjct: 68 NNLTQINFS---NNQLT-------DITPLKNLTKLVDILMNNNQIADITP----LANLTN 113
Query: 225 LQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
L L L +N + ++ P+ N ++L L+LS N + S L GL+ L L G N
Sbjct: 114 LTGLTLF----NNQITDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFG-N 165
Query: 284 SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS----S 339
P L NLT+LE LD+ SN +S I L K T LE L N++ + +
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILT 221
Query: 340 VLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHN 398
L + N +I L NL L L +N+ P L LT L L L N
Sbjct: 222 NLDELSLNGNQLK-DIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 275
Query: 399 NFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMD 458
S P + LT L+ L +
Sbjct: 276 QISNISP--LAGLT--------------------ALTNL--------------------E 293
Query: 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQ 518
L+ N L ++NL L L L N ++ P V ++ L+ + F N +S
Sbjct: 294 LNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VS 347
Query: 519 SISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNASCFAGNNLCGAPLPKNCTDQNVPIP 576
S+++LT ++ L+ N ++ PL T++ + AP + ++P
Sbjct: 348 SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN---DQAWTNAP-VNYKANVSIPNT 403
Query: 577 AENENG 582
+N G
Sbjct: 404 VKNVTG 409
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 95/453 (20%), Positives = 161/453 (35%), Gaps = 79/453 (17%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
S DL + L ++ + ++ +L I+ S +LT + P L NL L
Sbjct: 40 VSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94
Query: 170 LDLSIDTHNPIS---------------FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD 214
+ ++ +N I+ + + L L+ L L+L+ +S S
Sbjct: 95 ILMN---NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 151
Query: 215 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH 274
+ L SLQ L + P+AN ++L LD+S N+ + S L L++
Sbjct: 152 L----SGLTSLQQLSFG----NQVTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTN 200
Query: 275 LVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
L L N P L LT+L+ L L + N + I T L T L L L N++
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSL-NGNQLKDIGT-LASLTNLTDLDLANNQIS 256
Query: 335 GMIS----SVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTS 389
+ + L +G N S P L L L L N+ + P + L +
Sbjct: 257 NLAPLSGLTKLTELKLGANQISNISPL----AGLTALTNLELNENQLEDISP--ISNLKN 310
Query: 390 LHILDLSHNNFSGTLPRCINNLTAMMN---QENSMETDKEYDTFTIELSILVVMKGRELA 446
L L L NN S P +++LT + N ++S + LA
Sbjct: 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNN-------------KVSDV-----SSLA 350
Query: 447 YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESID 506
T + + N +S + NL + L L+ + ++
Sbjct: 351 NLTNINWL---SAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405
Query: 507 FSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGK 539
L P +IS + +++ N +
Sbjct: 406 NVTGALI--APATISDGGSYTEPDITWNLPSYT 436
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-27
Identities = 93/432 (21%), Positives = 157/432 (36%), Gaps = 72/432 (16%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
L +L LV + ++NN + L + +L + L ++T + P L NL NL
Sbjct: 84 TPLKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 138
Query: 170 LDLSIDTHNPISF----------SFLYLEN----FSWLSGLSLLKHLDLTGVDLSTASDW 215
L+LS N IS L N L+ L+ L+ LD++ +S S
Sbjct: 139 LELS---SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 195
Query: 216 FLVTNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH 274
L +L+ L + +N + ++ P+ ++L L L+ N+ + L L++
Sbjct: 196 ----AKLTNLESLIAT----NNQISDITPLGILTNLDELSLNGNQLKD---IGTLASLTN 244
Query: 275 LVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
L LDL N P L LT L L L N IS+I L T L L L EN+L+
Sbjct: 245 LTDLDLANNQISNLAP--LSGLTKLTELKL-GANQISNISP-LAGLTALTNLELNENQLE 300
Query: 335 GMIS----SVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTS 389
+ L + N S P + L L L +NK + L LT+
Sbjct: 301 DISPISNLKNLTYLTLYFNNISDISP--VSS--LTKLQRLFFYNNKVSD--VSSLANLTN 354
Query: 390 LHILDLSHNNFSGTLP-RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN 448
++ L HN S P + +T + + + + Y
Sbjct: 355 INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNA-------------------PVNYK 395
Query: 449 TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFS 508
+ + + L P +++ + +++ N + E +I
Sbjct: 396 ANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKG 452
Query: 509 GNLLSGRIPQSI 520
SG + Q +
Sbjct: 453 TTTFSGTVTQPL 464
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517
++ + I T L L + + + + ++ +
Sbjct: 7 TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SI 61
Query: 518 QSISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNAS 552
+ L L+ +N S+N LT PL T+L +
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 98
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-29
Identities = 70/432 (16%), Positives = 137/432 (31%), Gaps = 99/432 (22%)
Query: 113 LDLKHLVYLDLSNNNFENNQIPVFLGF----MGSLRHIDLSRAELTGMIPHQLGNLFNLQ 168
+D + + + V+ GF + + + + + + + L + ++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 228
L+L+ I ++ ++ + ++ L + N +
Sbjct: 73 LLNLN---DLQIE----EIDTYA-FAYAHTIQKLYMGF-------------NAI------ 105
Query: 229 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGG 287
LP N L L L N+ + +P +F L L + N+
Sbjct: 106 --------RYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLER 155
Query: 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM-ISSVLVVFDI 346
D Q TSL++L L S+N ++ + L L + ++ N L + I + D
Sbjct: 156 IEDDTFQATTSLQNLQL-SSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDA 212
Query: 347 GENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
N + + + L IL+L+ N L L +DLS+N +
Sbjct: 213 SHNSINV-----VRGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMY 265
Query: 406 RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS 465
+ + L +S N L
Sbjct: 266 HPFVKMQRL----------------------------ERL------------YISNNRLV 285
Query: 466 GDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525
+ + L+ L+LSHN L + N LE++ N + + +S+
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHT 340
Query: 526 LSHLNLSDNNLT 537
L +L LS N+
Sbjct: 341 LKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-26
Identities = 78/370 (21%), Positives = 140/370 (37%), Gaps = 52/370 (14%)
Query: 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM-LPSLQVLKLSACSLHNSLPELPIA 245
E S L +D+ T +F ++ L + +++ ++ LP +
Sbjct: 8 PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLD 66
Query: 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLR 305
+F + L+L+ + + + L +GFN+ P QN+ L L L
Sbjct: 67 SFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL- 124
Query: 306 SNNFISSIPTWL-HKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLL 364
N +SS+P + H +L LS+ N L+ I ++ F
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE----------RIEDDTFQA----------T 164
Query: 365 RNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423
+L L+L SN+ + L + SL ++S+N S TL I + + NS+
Sbjct: 165 TSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-TLAIPIA-VEELDASHNSI-N 218
Query: 424 DKEYDTFTIELSILVVMKGRELAYN--------TMLKLVRCMDLSGNNLSGDIPEEM-TN 474
EL+IL +L +N + +DLS N L I
Sbjct: 219 VVRGPVNV-ELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVK 270
Query: 475 LLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534
+ L+ L +S+N L + + +L+ +D S N L + ++ L +L L N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328
Query: 535 NLTGKIPLGT 544
++ + L T
Sbjct: 329 SIV-TLKLST 337
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 64/317 (20%), Positives = 104/317 (32%), Gaps = 62/317 (19%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
+ K+ +LLD + + L+L++ E F +++ + + + + PH N
Sbjct: 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQN 115
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
+ L L L N +S L L L ++ +L D
Sbjct: 116 VPLLTVLVLE---RNDLS----SLPRGI-FHNTPKLTTLSMSNNNLERIEDDTFQA--TT 165
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN-----------------TLVP 266
SLQ L+LS N L + ++ SL+ ++SYN +V
Sbjct: 166 SLQNLQLS----SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221
Query: 267 SWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEY 325
+ L L L N+ L N L +DL S N + I K RLE
Sbjct: 222 GPVN--VELTILKLQHNNLTDT--AWLLNYPGLVEVDL-SYNELEKIMYHPFVKMQRLER 276
Query: 326 LSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAEL 384
L + NRL + + + L +L L N +
Sbjct: 277 LYISNNRLV-------------------ALNLYGQP--IPTLKVLDLSHNHLL-HVERNQ 314
Query: 385 CRLTSLHILDLSHNNFS 401
+ L L L HN+
Sbjct: 315 PQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 19/166 (11%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174
L L L +NN L L +DLS EL ++ H + L+ L +S
Sbjct: 225 NVELTILKLQHNNLT--DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS- 280
Query: 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234
+N + L + + LK LDL+ L L+ L L
Sbjct: 281 --NNRLV----ALNLY--GQPIPTLKVLDLSHNHLLHVERNQP---QFDRLENLYLD--- 326
Query: 235 LHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
HNS+ L ++ +L L LS+N++D + + ++ D
Sbjct: 327 -HNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 3e-29
Identities = 57/302 (18%), Positives = 106/302 (35%), Gaps = 51/302 (16%)
Query: 108 INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167
I+ + +++++ + + +++ +DLS L+ + L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 168 QYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 227
+ L+LS N + L LS L+ LDL + PS++
Sbjct: 61 ELLNLS---SNVLY-------ETLDLESLSTLRTLDLNNNYVQELLV-------GPSIET 103
Query: 228 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG-LSHLVFLDLGFNSFG 286
L + +N++ + + + L+ N+ T++ G S + +LDL N
Sbjct: 104 LHAA----NNNISRVSCSRGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 287 G-PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFD 345
+ + +LEHL+L NFI + + F +L+ L L N+L
Sbjct: 158 TVNFAELAASSDTLEHLNL-QYNFIYDVKGQVV-FAKLKTLDLSSNKLA----------- 204
Query: 346 IGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTL 404
+ + + LR+NK I L +L DL N F
Sbjct: 205 --------FMGPEFQS--AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253
Query: 405 PR 406
R
Sbjct: 254 LR 255
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 50/302 (16%), Positives = 91/302 (30%), Gaps = 54/302 (17%)
Query: 238 SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLT 297
++ E+ N + ++ + + S ++ LDL N L T
Sbjct: 1 AIHEI-KQNGNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 298 SLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM-ISSVLVVFDIGENGFSGNIP 356
LE L+L S+N + L + L L L N +Q + + + N S +
Sbjct: 59 KLELLNL-SSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVS 115
Query: 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG-TLPRCINNLTAMM 415
G+ + L +NK + + + LDL N + +
Sbjct: 116 CSRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL- 171
Query: 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNL 475
L +L N + D+ +
Sbjct: 172 ---------------------------EHL------------NLQYNFIY-DVKGQ-VVF 190
Query: 476 LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNN 535
L++L+LS N LA + + + I N L I +++ L H +L N
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 536 LT 537
Sbjct: 249 FH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 56/377 (14%), Positives = 109/377 (28%), Gaps = 89/377 (23%)
Query: 157 IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWF 216
I N + ++ + + + S +K LDL+G LS S
Sbjct: 2 IHEIKQNGNRYKIEKVT---DSSLKQA-----LASLRQSAWNVKELDLSGNPLSQISAAD 53
Query: 217 LVTNMLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275
L L++L LS N L E + + S+L TLDL+ N L +
Sbjct: 54 LAP--FTKLELLNLS----SNVLYETLDLESLSTLRTLDLNNNYV------QELLVGPSI 101
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335
L N+ + +++ L +N +R++YL L+ N +
Sbjct: 102 ETLHAANNNISR-VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID- 157
Query: 336 MISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILD 394
+ + + L L L+ N + ++ L LD
Sbjct: 158 ---------TVNFAELAAS---------SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLD 197
Query: 395 LSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLV 454
LS N + + + ++ +
Sbjct: 198 LSSNKLA-FMGPEFQSAAG--------------------VTWI----------------- 219
Query: 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLA-GKIPENVGAMRSLESIDFSGNLLS 513
L N L I + + L+ +L N G + + + ++++
Sbjct: 220 ---SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275
Query: 514 GRIPQSISSLTFLSHLN 530
+ ++ L H
Sbjct: 276 TGQNEEECTVPTLGHYG 292
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 19/102 (18%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
+ ++ ++L + + ++ L+LS N L+ ++ LE ++ S N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNAS 552
+L + SL+ L L+L++N + ++ +G ++ +A+
Sbjct: 69 VLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAA 107
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 26/191 (13%), Positives = 50/191 (26%), Gaps = 14/191 (7%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
+ YLDL N + +L H++L + + Q+ L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196
Query: 171 DLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
DLS N ++ ++ + + + L L +L+ L
Sbjct: 197 DLS---SNKLA----FMG--PEFQSAAGVTWISLRNNKLVLIEKAL---RFSQNLEHFDL 244
Query: 231 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP 290
H + + T+ + + + P
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304
Query: 291 DGLQNLTSLEH 301
D L L H
Sbjct: 305 DRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 468 IPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527
I E N + ++ + L + + +++ +D SGN LS ++ T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 528 HLNLSDNNLTGKIPLG--TQLQ 547
LNLS N L + L + L+
Sbjct: 62 LLNLSSNVLYETLDLESLSTLR 83
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 6e-29
Identities = 81/434 (18%), Positives = 145/434 (33%), Gaps = 70/434 (16%)
Query: 108 INPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167
INP + L ++N ++PV + S + +E P G +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 168 QYLDLSIDTHNPISFSFLYLENFSWL-SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 226
L L S L L+ L + L+ + L SL
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELP---QSLKSLL 117
Query: 227 VLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG 286
V + +L +LP L L +S N+ +P L S L +D+ NS
Sbjct: 118 VDNNN----LKALSDLP----PLLEYLGVSNNQL--EKLPE-LQNSSFLKIIDVDNNSLK 166
Query: 287 GPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDI 346
+PD +L + NN + +P L L + N L+
Sbjct: 167 K-LPDLPPSLE---FIAA-GNNQLEELPE-LQNLPFLTAIYADNNSLK------------ 208
Query: 347 GENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR 406
+P L +++ +N + EL L L + +N TLP
Sbjct: 209 -------KLPDLPLS--LESIV--AGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPD 254
Query: 407 CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN---TMLKLVRCMDLSGNN 463
+L A+ ++N + L + E ++ + + ++ S N
Sbjct: 255 LPPSLEALNVRDNYLT------DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 308
Query: 464 LSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL 523
+ + + + L+ LN+S+N L ++P LE + S N L+ +P+ +L
Sbjct: 309 IR-SLCDLPPS---LEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNL 359
Query: 524 TFLSHLNLSDNNLT 537
L++ N L
Sbjct: 360 K---QLHVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 85/465 (18%), Positives = 151/465 (32%), Gaps = 68/465 (14%)
Query: 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNN--------NFENNQIPVFLGFMGSLRH 145
+Y + S+ P + + + L + N + L
Sbjct: 36 KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLES 95
Query: 146 IDLSRAELTGMIPHQLGNLFNLQYLDLSID--THNPISFSFLYL-----ENFSWLSGLSL 198
+ S LT +P +L +L + ++ + P +L + E L S
Sbjct: 96 LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154
Query: 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSY 257
LK +D+ L + ++ PSL+ + +N L ELP + N L +
Sbjct: 155 LKIIDVDNNSLKK------LPDLPPSLEFIAAG----NNQLEELPELQNLPFLTAIYADN 204
Query: 258 NEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWL 317
N +P L + G N LQNL L + NN + ++P
Sbjct: 205 NSL--KKLPDLPLSLESI---VAGNNILE--ELPELQNLPFLTTIYA-DNNLLKTLPDLP 256
Query: 318 HKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKF 376
L L + S L D+ EN FS + +L NL L SN+
Sbjct: 257 PSLEALNVRDNYLTDLPELPQS-LTFLDVSENIFS-GLS-----ELPPNLYYLNASSNEI 309
Query: 377 DGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSI 436
+ SL L++S+N LP L ++ N +
Sbjct: 310 R-SLCDLP---PSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAE------VPELPQN 358
Query: 437 LVVMKGRELAYNTMLKLVRCM----DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI 492
L + + YN + + DL N+ ++PE NL + L++ N L +
Sbjct: 359 LKQL---HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL---KQLHVETNPLR-EF 411
Query: 493 PENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
P+ S+E + + + + + L ++
Sbjct: 412 PDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 83/457 (18%), Positives = 154/457 (33%), Gaps = 94/457 (20%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFL------------GFMGSLRHIDLSRAE 152
+ ++ ++K + + +E N P ++L+
Sbjct: 23 LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82
Query: 153 LTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTA 212
L+ +P +L+ L S N ++ E L L + LS
Sbjct: 83 LS-SLPELPP---HLESLVAS---CNSLT------ELPELPQSLKSLLVDNNNLKALS-- 127
Query: 213 SDWFLVTNMLPSLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEFDNTLVPSWLFG 271
++ P L+ L +S +N L +LP + N S L +D+ N +P
Sbjct: 128 -------DLPPLLEYLGVS----NNQLEKLPELQNSSFLKIIDVDNNSL--KKLPDL--- 171
Query: 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
L F+ G N +P+ LQNL L + NN + +P LE + N
Sbjct: 172 PPSLEFIAAGNNQLEE-LPE-LQNLPFLTAIYA-DNNSLKKLPDLPLS---LESIVAGNN 225
Query: 332 RLQ-----GMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCR 386
L+ + L N +P L L +R N +P
Sbjct: 226 ILEELPELQNLPF-LTTIYADNNLLK-TLPDLPPS--LEA--LNVRDNYLT-DLPELPQS 278
Query: 387 LTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA 446
LT L + + + L NL + N + + L + ++
Sbjct: 279 LTFLDVSENIFSG----LSELPPNLYYLNASSNEIR------SLCDLPPSLEELN---VS 325
Query: 447 YNTMLKL------VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR 500
N +++L + + S N+L+ ++PE N L+ L++ +N L + P+ ++
Sbjct: 326 NNKLIELPALPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVE 380
Query: 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
L N +P+ +L L++ N L
Sbjct: 381 DLRM-----NSHLAEVPELPQNLK---QLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 9e-16
Identities = 51/289 (17%), Positives = 98/289 (33%), Gaps = 37/289 (12%)
Query: 270 FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLR 329
+ L ++ +P +N+ S + + + P + + LR
Sbjct: 8 VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 330 ENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTS 389
+ + ++ G S ++P L + L N ++P L S
Sbjct: 67 DCLDRQ-----AHELELNNLGLS-SLPELPPH--LES--LVASCNSLT-ELPELPQSLKS 115
Query: 390 LHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN- 448
L + + + L L + N +E E + L I+ ++ N
Sbjct: 116 LLVDNNNLKA----LSDLPPLLEYLGVSNNQLEKLPELQNSS-FLKII------DVDNNS 164
Query: 449 -----TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503
+ + + N L ++P E+ NL L ++ +N L K+P+ SLE
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDL---PLSLE 218
Query: 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNAS 552
SI N+L + +L FL+ + +N L L L+ N
Sbjct: 219 SIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVR 265
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 59/191 (30%)
Query: 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMM 415
P + L+ + + ++P E + S + + + P M
Sbjct: 5 PRNVSNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNL 475
L + + EL +L+ LS +PE +L
Sbjct: 62 VSR---------------LRDCLDRQAHEL------------ELNNLGLS-SLPELPPHL 93
Query: 476 LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNN 535
+SL S N L +P+ SL L N +
Sbjct: 94 ---ESLVASCNSLT-------------------------ELPELPQSLKSLLVDNNNLKA 125
Query: 536 LTGKIPLGTQL 546
L+ PL L
Sbjct: 126 LSDLPPLLEYL 136
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 68/305 (22%), Positives = 135/305 (44%), Gaps = 47/305 (15%)
Query: 105 IGKINP-SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
+ + P + +L +L L L +N + + VF G + +L +D+S ++ ++ + +
Sbjct: 68 VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQD 126
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNML 222
L+NL+ L++ N + Y+ + SGL+ L+ L L +L++ ++ + L
Sbjct: 127 LYNLKSLEVG---DNDLV----YISH-RAFSGLNSLEQLTLEKCNLTSIPTEAL---SHL 175
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLY---TLDLSYNEFDNTLVPSWLFGLSHLVFLD 279
L VL+L H ++ + +F LY L++S+ + +T+ P+ L+GL+ L L
Sbjct: 176 HGLIVLRLR----HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLS 230
Query: 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMIS 338
+ + +++L L L+L S N IS+I LH+ RL+ + L +L
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNL-SYNPISTIEGSMLHELLRLQEIQLVGGQLA---- 285
Query: 339 SVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCR-LTSLHILDLS 396
+ F G L L +L + N+ + + + +L L L
Sbjct: 286 ------VVEPYAFRG----------LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILD 328
Query: 397 HNNFS 401
N +
Sbjct: 329 SNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-27
Identities = 64/305 (20%), Positives = 108/305 (35%), Gaps = 40/305 (13%)
Query: 105 IGKINP-SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I +N HL L+L+ N + F + +LR + L L +
Sbjct: 44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTG 102
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNML 222
L NL LD+S N I L + L LK L++ DL + F + L
Sbjct: 103 LSNLTKLDIS---ENKIV----ILLD-YMFQDLYNLKSLEVGDNDLVYISHRAF---SGL 151
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
SL+ L L C+L S+P +++ L L L + N + L L L++
Sbjct: 152 NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISH 209
Query: 283 NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVL 341
+ + +L L + N ++++P + L +L+L N +
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS------- 261
Query: 342 VVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNF 400
I + L L ++L + P L L +L++S N
Sbjct: 262 ---TIEGSMLHE----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 401 SGTLP 405
+ TL
Sbjct: 309 T-TLE 312
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-26
Identities = 72/331 (21%), Positives = 117/331 (35%), Gaps = 61/331 (18%)
Query: 219 TNMLPSLQVLKLSACSLHNSLPELPIANFS---SLYTLDLSYNEFDNTLVPSWLFGLSHL 275
+ ++L L N + L F+ L L+L+ N + P L +L
Sbjct: 28 EGIPTETRLLDLG----KNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNL 82
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQ 334
L L N L++L LD+ S N I + L+ L + +N L
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDI-SENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 335 GMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAE-LCRLTSLHI 392
I FSG L +L L L IP E L L L +
Sbjct: 142 ----------YISHRAFSG----------LNSLEQLTLEKCNLT-SIPTEALSHLHGLIV 180
Query: 393 LDLSHNNFS----GTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN 448
L L H N + + R ++ ++T + + L+ L
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL----------- 229
Query: 449 TMLKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESID 506
++ NL+ +P +L+ L+ LNLS+N ++ I ++ + L+ I
Sbjct: 230 ---------SITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQ 278
Query: 507 FSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
G L+ P + L +L LN+S N LT
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 3e-22
Identities = 60/308 (19%), Positives = 92/308 (29%), Gaps = 67/308 (21%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C +P + LDL N TL HL L+L N P
Sbjct: 18 CH-RKRFVAVPEGIPTETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 293 LQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351
NL +L L L +N + IP + L L + EN++ + + F
Sbjct: 76 FNNLFNLRTLGL-RSNRLKLIPLGVFTGLSNLTKLDISENKIV----------ILLDYMF 124
Query: 352 SGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNFSGTLPRCIN 409
L NL L + N I L SL L L N + ++
Sbjct: 125 QD----------LYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Query: 410 NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIP 469
+L L +L L N++
Sbjct: 174 HLHG--------------------LIVL--------------------RLRHLNINAIRD 193
Query: 470 EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHL 529
L L+ L +SH + N +L S+ + L+ ++ L +L L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 530 NLSDNNLT 537
NLS N ++
Sbjct: 254 NLSYNPIS 261
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-19
Identities = 58/307 (18%), Positives = 105/307 (34%), Gaps = 47/307 (15%)
Query: 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRS 306
+ + F VP + + LDLG N D + LE L+L +
Sbjct: 10 SAQDRAVLCHRKRFVA--VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELEL-N 64
Query: 307 NNFISSI-PTWLHKFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWI 359
N +S++ P + L L LR NRL+ + V L DI EN +
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-----L 119
Query: 360 GEKLLRNL----ILRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414
+ + ++L L + N I L SL L L N + +++L +
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Query: 415 MN---QENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEE 471
+ + ++ ++ +F L ++ +++S +
Sbjct: 179 IVLRLRHLNINAIRD-YSF------------------KRLYRLKVLEISHWPYLDTMTPN 219
Query: 472 MTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLN 530
L L SL+++H L +P + L ++ S N +S + L L +
Sbjct: 220 CLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 531 LSDNNLT 537
L L
Sbjct: 279 LVGGQLA 285
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 38/159 (23%)
Query: 103 KLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162
+ + P+ L +L L +++ N L + +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCN---------------LTAVP----------YLAVR 245
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNM 221
+L L++L+LS +NPIS +E S L L L+ + L G L+ F
Sbjct: 246 HLVYLRFLNLS---YNPIS----TIEG-SMLHELLRLQEIQLVGGQLAVVEPYAF---RG 294
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 260
L L+VL +S L +L E + +L TL L N
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 62/302 (20%), Positives = 106/302 (35%), Gaps = 43/302 (14%)
Query: 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS-- 173
LDL NN + F + +L + L +++ + P L L+ L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 174 ----IDTHNPISFSFLYLEN-------FSWLSGLSLLKHLDLTGVDLSTA---SDWFLVT 219
+ P + L + S +GL+ + ++L L ++ + F
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF--- 167
Query: 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFL 278
+ L ++++ ++ +P SL L L N+ T V + GL++L L
Sbjct: 168 QGMKKLSYIRIA----DTNITTIPQGLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKL 221
Query: 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS 338
L FNS L N L L L +NN + +P L ++ + L N +
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHL-NNNKLVKVPGGLADHKYIQVVYLHNNNIS---- 276
Query: 339 SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF-DGQIPAELCR-LTSLHILDLS 396
IG N F P K + L SN +I R + + L
Sbjct: 277 ------AIGSNDFC---PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327
Query: 397 HN 398
+
Sbjct: 328 NY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 7e-26
Identities = 75/404 (18%), Positives = 124/404 (30%), Gaps = 117/404 (28%)
Query: 142 SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKH 201
LR + S L +P L + LDL +N I+ +++ L L
Sbjct: 32 HLRVVQCSDLGLEK-VPKDLPP--DTALLDLQ---NNKITE----IKDGD-FKNLKNLHT 80
Query: 202 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261
L L +S S L L+ L LS N L ELP +L L + NE
Sbjct: 81 LILINNKISKISPGAFAP--LVKLERLYLS----KNQLKELPEKMPKTLQELRVHENEI- 133
Query: 262 NTLVPSWLFGLSHLVFLDLGFNSFG-GPIPDG-LQNLTSLEHLDLRSNNFISSIPTWLHK 319
+ S GL+ ++ ++LG N I +G Q + L ++ + ++ I++IP L
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI-ADTNITTIPQGL-- 190
Query: 320 FTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ 379
L L L N++ + G
Sbjct: 191 PPSLTELHLDGNKIT----------KVDAASLKG-------------------------- 214
Query: 380 IPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVV 439
L +L L LS N+ S + N +
Sbjct: 215 -------LNNLAKLGLSFNSISAVDNGSLANTPHL------------------------- 242
Query: 440 MKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV--- 496
REL L+ N L +P + + +Q + L +N ++ I N
Sbjct: 243 ---REL------------HLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCP 285
Query: 497 ----GAMRSLESIDFSGN-LLSGRIPQSI-SSLTFLSHLNLSDN 534
S + N + I S + + + L +
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 68/378 (17%), Positives = 124/378 (32%), Gaps = 88/378 (23%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT 176
HL + S+ E ++P +DL ++T + NL NL L L
Sbjct: 32 HLRVVQCSDLGLE--KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILI--- 84
Query: 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236
+N IS + + + L L+ L L+ L L M +LQ L++
Sbjct: 85 NNKIS----KISPGA-FAPLVKLERLYLSKNQLKE-----LPEKMPKTLQELRVH----E 130
Query: 237 NSLPELPIANFS---SLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDG 292
N + ++ + F+ + ++L N ++ + + F G+ L ++ + + IP G
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG 189
Query: 293 LQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351
L SL L L N I+ + L L L L N + +
Sbjct: 190 L--PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSIS----------AVDNGSL 236
Query: 352 SGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINN 410
+ +L L L +NK ++P L + ++ L +NN S +
Sbjct: 237 AN----------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS---- 280
Query: 411 LTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS-GDIP 469
+ F YNT + L N + +I
Sbjct: 281 -----------------NDF------------CPPGYNTKKASYSGVSLFSNPVQYWEIQ 311
Query: 470 EEM-TNLLALQSLNLSHN 486
+ ++ L +
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 62/322 (19%), Positives = 104/322 (32%), Gaps = 70/322 (21%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
CS L ++P LDL N+ + L +L L L N P
Sbjct: 38 CS-DLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV------LVVFDI 346
L LE L L S N + +P + L+ L + EN + + SV ++V ++
Sbjct: 96 FAPLVKLERLYL-SKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 347 GENGFSGNIPAWIGEKLLRNL----ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG 402
G N + I + + +R+ IP L SL L L N +
Sbjct: 153 GTNPLK---SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITK 206
Query: 403 TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGN 462
+ L L+ L LS N
Sbjct: 207 VDAASLKGLNN--------------------LAKL--------------------GLSFN 226
Query: 463 NLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSG------R 515
++S + N L+ L+L++N L K+P + + ++ + N +S
Sbjct: 227 SIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Query: 516 IPQSISSLTFLSHLNLSDNNLT 537
P + S ++L N +
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQ 306
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 51/255 (20%), Positives = 83/255 (32%), Gaps = 39/255 (15%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I KI+P L L L LS N + + +L+ + + E+T +
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNG 143
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSL------------------LKHLDLT 205
L + ++L NP+ S + F + LS L L L
Sbjct: 144 LNQMIVVELG---TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200
Query: 206 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLV 265
G ++ L L +L L LS S+ ++ +AN L L L+ N+ V
Sbjct: 201 GNKITKVDAASL--KGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL--VKV 255
Query: 266 PSWLFGLSHLVFLDLGFNSFGG------PIPDGLQNLTSLEHLDLRSNNF-ISSI-PTWL 317
P L ++ + L N+ P S + L SN I P+
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315
Query: 318 HKFTRLEYLSLRENR 332
+ L +
Sbjct: 316 RCVYVRAAVQLGNYK 330
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 70/362 (19%), Positives = 135/362 (37%), Gaps = 51/362 (14%)
Query: 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT 252
L + + + + +T L + +++ ++ LP + +F +
Sbjct: 23 LQYDCVFYDVHIDMQTQDVYFGFEDIT--LNNQKIVTFKNSTM-RKLPAALLDSFRQVEL 79
Query: 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISS 312
L+L+ + + + L +GFN+ P QN+ L L L N +SS
Sbjct: 80 LNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL-ERNDLSS 137
Query: 313 IPTWL-HKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILR 370
+P + H +L LS+ N L+ I ++ F +L L+
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLE----------RIEDDTFQA----------TTSLQNLQ 177
Query: 371 LRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430
L SN+ + L + SL ++S+N S TL I + + NS+
Sbjct: 178 LSSNRLT-HVDLSL--IPSLFHANVSYNLLS-TLAIPIA-VEELDASHNSINV------- 225
Query: 431 TIELSILVVMKGRELAYN--------TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLN 482
+ + V + +L +N + +DLS N L + + L+ L
Sbjct: 226 -VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284
Query: 483 LSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542
+S+N L + + +L+ +D S N L + ++ L +L L N++ + L
Sbjct: 285 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL 341
Query: 543 GT 544
T
Sbjct: 342 ST 343
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 2e-25
Identities = 73/436 (16%), Positives = 134/436 (30%), Gaps = 96/436 (22%)
Query: 109 NPSLLDLKHLVYLDLSNNNFENNQIPV-FLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167
+ L + + N+ ++P L + ++L+ ++ + + +
Sbjct: 44 GFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 101
Query: 168 QYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 227
Q L + N I YL + LL L L DLS+ P L
Sbjct: 102 QKLYMG---FNAIR----YLPPHV-FQNVPLLTVLVLERNDLSSLPRGIFHN--TPKLTT 151
Query: 228 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG 287
L +S +L + + +SL L LS N T V L L ++ +N
Sbjct: 152 LSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL--THVDLSLI--PSLFHANVSYNLL-- 204
Query: 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIG 347
L ++E LD S+N I+ + L L L+ N L
Sbjct: 205 ---STLAIPIAVEELDA-SHNSINVVRG--PVNVELTILKLQHNNLT------------- 245
Query: 348 ENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNFSGTLPR 406
+ + L + L N+ + +I ++ L L +S+N L
Sbjct: 246 ------DTAWLLNYPGLV--EVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNL 295
Query: 407 CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSG 466
+ L +L DLS N+L
Sbjct: 296 YGQPIPT--------------------LKVL--------------------DLSHNHLL- 314
Query: 467 DIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFL 526
+ L++L L HN + + +L+++ S N +++ +
Sbjct: 315 HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRAL--FRNV 369
Query: 527 SHLNLSDNNLTGKIPL 542
+ + D + KI
Sbjct: 370 ARPAVDDADQHCKIDY 385
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 8e-25
Identities = 69/417 (16%), Positives = 134/417 (32%), Gaps = 63/417 (15%)
Query: 105 IGKINPSLL-DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I + P + ++ L L L N+ + +F L + +S L +
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN-TPKLTTLSMSNNNLERIEDDTFQA 169
Query: 164 LFNLQYLDLSIDTHNPIS-FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 222
+LQ L LS N ++ + + L H +++ LST +
Sbjct: 170 TTSLQNLQLS---SNRLTHVDLSLIPS---------LFHANVSYNLLSTLAI-------P 210
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
+++ L S HNS+ + L L L +N + +WL LV +DL +
Sbjct: 211 IAVEELDAS----HNSINVVRGPVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSY 263
Query: 283 NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLV 342
N + + LE L + SNN + ++ + L+ L L N L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYI-SNNRLVALNLYGQPIPTLKVLDLSHNHLL-------- 314
Query: 343 VFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFS 401
+ N L L L N + +L L LSHN++
Sbjct: 315 --HVERNQPQ-----------FDRLENLYLDHNSI-VTLKLST--HHTLKNLTLSHNDWD 358
Query: 402 GTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSG 461
+ L + + + D+ L + + + +L+ +
Sbjct: 359 CN---SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL----- 410
Query: 462 NNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQ 518
++ + A ++N + + ++ E ++ N L + Q
Sbjct: 411 TSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 18/235 (7%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGF-MGSLRHIDLSRAELTGMIPHQLG 162
+ + + D L L L LS+N F SL+++DLS + +
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 98
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNM 221
L L++LD H+ + + FS L L +LD++ + F N
Sbjct: 99 GLEQLEHLDFQ---HSNLK----QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF---NG 148
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
L SL+VLK++ S + +L LDLS + + L P+ LS L L++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207
Query: 282 FNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP--TWLHKFTRLEYLSLRENRLQ 334
N+F + L SL+ LD S N I + H + L +L+L +N
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDY-SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-22
Identities = 61/264 (23%), Positives = 92/264 (34%), Gaps = 34/264 (12%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT--GMIPHQLGNLFNLQYLDLSI 174
L+L +N ++ VF + L + LS L+ G +L+YLDLS
Sbjct: 29 SATRLELESNKLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS- 86
Query: 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234
N + NF GL L+HLD +L S++ + + L +L L +S
Sbjct: 87 --FNGVIT---MSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTH 137
Query: 235 LHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ 294
SSL L ++ N F +P L +L FLDL P
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGN 354
+L+SL+ L++ NNF S L+ L N +
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-------------------T 237
Query: 355 IPAWIGEKLLRNL-ILRLRSNKFD 377
+ +L L L N F
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 9e-22
Identities = 69/314 (21%), Positives = 110/314 (35%), Gaps = 77/314 (24%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN--SFGGPIP 290
C+ L +P SS L+L N+ + L L+ L L L N SF G
Sbjct: 14 CN-SKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350
TSL++LDL S N + ++ + +LE+L + + L+ M +
Sbjct: 72 QSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--------- 121
Query: 351 FSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCR-LTSLHILDLSHNNFSGTLPRCI 408
F LRNL L + + L+SL +L ++ N+F
Sbjct: 122 FLS----------LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLP-- 168
Query: 409 NNLTAMMNQENSMETDKEYDTFT--IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSG 466
D FT L+ L DLS L
Sbjct: 169 -------------------DIFTELRNLTFL--------------------DLSQCQLE- 188
Query: 467 DIPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSI--SS 522
+ +L +LQ LN+SHN + + SL+ +D+S N + +
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF 246
Query: 523 LTFLSHLNLSDNNL 536
+ L+ LNL+ N+
Sbjct: 247 PSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 9e-17
Identities = 56/294 (19%), Positives = 92/294 (31%), Gaps = 76/294 (25%)
Query: 252 TLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFIS 311
+ + T VP+ + S L+L N LT L L L S+N +S
Sbjct: 11 EIRCNSKGL--TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSL-SSNGLS 65
Query: 312 SIPTWLHKF---TRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL- 367
T L+YL L N + M + F G L L
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVITM-----------SSNFLG----------LEQLE 104
Query: 368 ILRLRSNKFDGQIPAE--LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDK 425
L + + Q+ L +L LD+SH + N L++
Sbjct: 105 HLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------------ 151
Query: 426 EYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLS 484
L +L ++GN+ + ++ T L L L+LS
Sbjct: 152 --------LEVL--------------------KMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 485 HNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
L ++ ++ SL+ ++ S N L L L+ S N++
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 60/305 (19%), Positives = 116/305 (38%), Gaps = 38/305 (12%)
Query: 236 HNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQN 295
+ ++ + L++ + T +P L +H+ L + N+ +P
Sbjct: 28 AAVVQKMRACLNNGNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTS-LPALPPE 82
Query: 296 LTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355
L + L++ S N ++S+P L S L + S L I N + ++
Sbjct: 83 LRT---LEV-SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG-LCKLWIFGNQLT-SL 136
Query: 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMM 415
P L+ L + N+ +PA L L +N + +LP + L +
Sbjct: 137 PVLPPG--LQE--LSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGLQELS 187
Query: 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLV---RCMDLSGNNLSGDIPEEM 472
+N + + S L + ++ L + + +SGN L+ +P
Sbjct: 188 VSDNQLA------SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLP 240
Query: 473 TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532
+ L+ L +S N L +P L S+ N L+ R+P+S+ L+ + +NL
Sbjct: 241 SE---LKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292
Query: 533 DNNLT 537
N L+
Sbjct: 293 GNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 9e-25
Identities = 64/310 (20%), Positives = 108/310 (34%), Gaps = 55/310 (17%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174
H+ L + +NN +P LR +++S +LT +P L L
Sbjct: 60 PAHITTLVIPDNNL--TSLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLELSIFSNP- 112
Query: 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234
+ S L L + G L++ + + P LQ L +S
Sbjct: 113 --LTHLPAL------------PSGLCKLWIFGNQLTS------LPVLPPGLQELSVS--- 149
Query: 235 LHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ 294
N L LP A S L L N+ T +P S L L + N +P
Sbjct: 150 -DNQLASLP-ALPSELCKLWAYNNQL--TSLPM---LPSGLQELSVSDNQLAS-LPTLPS 201
Query: 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV--LVVFDIGENGFS 352
L L NN ++S+P + L+ L + NRL + L + N +
Sbjct: 202 ELYKLWAY----NNRLTSLPALP---SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT 254
Query: 353 GNIPAWIGEKLLRNLI-LRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNL 411
++P L+ L + N+ ++P L L+S ++L N S + + +
Sbjct: 255 -SLPMLPS-----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307
Query: 412 TAMMNQENSM 421
T+ +
Sbjct: 308 TSAPGYSGPI 317
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-24
Identities = 66/355 (18%), Positives = 123/355 (34%), Gaps = 65/355 (18%)
Query: 196 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 255
+ L++ L+T L + + L + N+L LP A L TL++
Sbjct: 39 NNGNAVLNVGESGLTT-----LPDCLPAHITTLVIP----DNNLTSLP-ALPPELRTLEV 88
Query: 256 SYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPT 315
S N+ T +P GL L +P L L N ++S+P
Sbjct: 89 SGNQL--TSLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLWI----FGNQLTSLPV 138
Query: 316 WLHKFTRLEYLSLRENRLQGMISSV--LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLR 372
L+ LS+ +N+L + + L N + ++P L L +
Sbjct: 139 LP---PGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLPS-----GLQELSVS 189
Query: 373 SNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTI 432
N+ +P L L + +LP + L ++ N + + +
Sbjct: 190 DNQL-ASLPTLPSELYKLWAYNNRLT----SLPALPSGLKELIVSGNRLTS------LPV 238
Query: 433 ELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI 492
S L + + +SGN L+ +P + L SL++ N L ++
Sbjct: 239 LPSEL-----------------KELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RL 276
Query: 493 PENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQ 547
PE++ + S +++ GN LS R Q++ +T + +
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 9e-14
Identities = 55/305 (18%), Positives = 93/305 (30%), Gaps = 38/305 (12%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFE------------NNQIPVFLGFMGSLRHIDLSRAE 152
+ + L L + NQ+ L+ + +S +
Sbjct: 93 LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152
Query: 153 LTGMIPHQLGNLFNLQYLDLSIDTHNPISFS---FLYLEN--FSWL-SGLSLLKHLDLTG 206
L +P L L + + T P+ S L + + + L + S L L
Sbjct: 153 LA-SLPALPSELCKLWAYNNQL-TSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYN 210
Query: 207 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266
L++ + + L+ L +S N L LP S L L +S N T +P
Sbjct: 211 NRLTS------LPALPSGLKELIVS----GNRLTSLP-VLPSELKELMVSGNRL--TSLP 257
Query: 267 SWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326
S L+ L + N +P+ L +L+S ++L N L + T
Sbjct: 258 MLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313
Query: 327 SLRENRLQGMISSVLVVFDIGENGFSGN-IPAWIGEKLLRNLILRLRSNKFDGQIPAELC 385
S R +S + +PA GE + L
Sbjct: 314 SGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLD 373
Query: 386 RLTSL 390
RL+
Sbjct: 374 RLSET 378
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 40/178 (22%)
Query: 383 ELCRLTSLHILDLSHNNFSGTLPRCI-NNLTAMMNQENSMETDKEYDTFTIELSILVVMK 441
C +L++ + + TLP C+ ++T ++ +N++ + L
Sbjct: 35 RACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT------SLPALPPELRT-- 85
Query: 442 GRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRS 501
+++SGN L+ +P LL L + L +P
Sbjct: 86 ---------------LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSG------ 122
Query: 502 LESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNL 559
L + GN L+ +P L L++SDN L L ++L A N L
Sbjct: 123 LCKLWIFGNQLT-SLPVLPPGLQ---ELSVSDNQLASLPALPSELCKLWAY---NNQL 173
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-25
Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 22/323 (6%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDL 280
L LQ LK+ + + SSL L L YN+F + + F GL++L L L
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ--LETGAFNGLANLEVLTL 110
Query: 281 GFNSF-GGPIPDGL-QNLTSLEHLDLRSNNFISSIP--TWLHKFTRLEYLSLRENRLQGM 336
+ G + + LTSLE L LR NN I I ++ R L L N+++ +
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSI 169
Query: 337 ISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLS 396
L F G + +L + + + + TS+ LDLS
Sbjct: 170 CEEDL-------LNFQGKHFTLL--RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 397 HNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRC 456
N F ++ + + A ++ + ++ + + + +
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV-KT 279
Query: 457 MDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSG 514
DLS + + + + + ++ L+ L L+ N + KI +N + L ++ S N L
Sbjct: 280 CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGS 337
Query: 515 RIPQSISSLTFLSHLNLSDNNLT 537
+ +L L L+LS N++
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIR 360
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 8e-20
Identities = 77/440 (17%), Positives = 130/440 (29%), Gaps = 82/440 (18%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I ++N + L+ L +L + + SL + L + +
Sbjct: 42 IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG 101
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
L NL+ L L+ + + L F L+ L+ L L ++ N +
Sbjct: 102 LANLEVLTLT---QCNLDGAVLSGNFF---KPLTSLEMLVLRDNNIKKIQPASFFLN-MR 154
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
VL L+ N + + + + + LS + D+
Sbjct: 155 RFHVLDLT----FNKVKSICEEDLLNFQGKHFTL------------LRLSSITLQDMNEY 198
Query: 284 SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHK---FTRLEYLSLRENRLQGMISSV 340
G TS+ LDL N F S+ T+++ L L + G
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 341 LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCR-LTSLHILDLSHNN 399
D F G + + L +K + + T L L L+ N
Sbjct: 259 TNFKDPDNFTFKGLEASGVKT-------CDLSKSKI-FALLKSVFSHFTDLEQLTLAQNE 310
Query: 400 FSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDL 459
+ LT L L +L
Sbjct: 311 INKIDDNAFWGLT--------------------HLLKL--------------------NL 330
Query: 460 SGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIP 517
S N L I M NL L+ L+LS+N + + + + +L+ + N L +P
Sbjct: 331 SQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVP 387
Query: 518 QSI-SSLTFLSHLNLSDNNL 536
I LT L + L N
Sbjct: 388 DGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 50/298 (16%), Positives = 98/298 (32%), Gaps = 59/298 (19%)
Query: 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV-------LVVFDIGEN 349
+ ++DL N+ T + L++L + + +I + L++ + N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 350 GFSGNIPAWIGEKLLRNLILRLRSNKF-DGQIPAEL-CRLTSLHILDLSHNNFSGTLPRC 407
F + L +L L + LTSL +L L NN P
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 408 I----NNLTAMM---NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKL------- 453
+ N+ S+ + + ++L L+ T+ +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL------RLSSITLQDMNEYWLGW 202
Query: 454 -----------VRCMDLSGNNLSGDIPEEMTNLLA---LQSLNLSHNFLAG--------- 490
+ +DLSGN + + + +A +QSL LS+++ G
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 491 KIPENV---GAMRSLESIDFSGNLLSGRIPQSI-SSLTFLSHLNLSDNNLTGKIPLGT 544
+++ D S + + + +S+ S T L L L+ N + KI
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNA 318
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 65/300 (21%), Positives = 104/300 (34%), Gaps = 41/300 (13%)
Query: 105 IGKINP-SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I ++ L+HL L L NN F + L+ + +S+ L IP N
Sbjct: 66 ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYISKNHLV-EIP---PN 120
Query: 164 LF-NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 222
L +L L + N I + SGL + +++ G L + + L
Sbjct: 121 LPSSLVELRIH---DNRIR----KVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLG 281
L L++S L +P +L L L +N+ + S L L LG
Sbjct: 173 -KLNYLRIS----EAKLTGIPKDLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLG 225
Query: 282 FNSFGGPIPDG-LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV 340
N I +G L L +L L L NN +S +P L L+ + L N +
Sbjct: 226 HNQIRM-IENGSLSFLPTLRELHL-DNNKLSRVPAGLPDLKLLQVVYLHTNNIT------ 277
Query: 341 LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD-GQIPAELCR-LTSLHILDLSHN 398
+G N F G K + L +N ++ R +T + +
Sbjct: 278 ----KVGVNDFCPVGF---GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 5e-23
Identities = 65/377 (17%), Positives = 125/377 (33%), Gaps = 87/377 (23%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT 176
HL + S+ + +P + +DL +++ + L +L L L
Sbjct: 34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLV--- 86
Query: 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236
+N IS + + S L L+ L ++ L + N+ SL L++
Sbjct: 87 NNKIS----KIHEKA-FSPLRKLQKLYISKNHLVE-----IPPNLPSSLVELRIH----D 132
Query: 237 NSLPELPIANFS---SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGL 293
N + ++P FS ++ +++ N +N+ F L +L + G IP L
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL 191
Query: 294 QNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352
+L L L N I +I L ++++L L L N+++ I S
Sbjct: 192 --PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIR----------MIENGSLS 238
Query: 353 GNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNL 411
L L L L +NK ++PA L L L ++ L NN + +
Sbjct: 239 F----------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV----- 281
Query: 412 TAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS-GDIPE 470
+ F + + + L N + ++
Sbjct: 282 ----------------NDFC------------PVGFGVKRAYYNGISLFNNPVPYWEVQP 313
Query: 471 EM-TNLLALQSLNLSHN 486
+ ++ +
Sbjct: 314 ATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 60/316 (18%), Positives = 108/316 (34%), Gaps = 59/316 (18%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
CS L +P LDL N+ + L GL HL L L N
Sbjct: 40 CS-DLGLKAVPKEISPDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKA 97
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352
L L+ L + S N + IP L + L L + +NR++ + + FS
Sbjct: 98 FSPLRKLQKLYI-SKNHLVEIPPNL--PSSLVELRIHDNRIR----------KVPKGVFS 144
Query: 353 GNIPAWIGEKLLRNL-ILRLRSNKF-DGQIPAELCRLTSLHILDLSHNNFSGTLPRCINN 410
G LRN+ + + N + L+ L +S +G
Sbjct: 145 G----------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194
Query: 411 LTAMMNQENSMETDKEYDTFTIELSILVVMKG-RELAYNTMLKLVRCMDLSGNNLSGDIP 469
L + N ++ IEL L+ L L N + I
Sbjct: 195 LNELHLDHNKIQA--------IELEDLLRYSKLYRL------------GLGHNQIR-MIE 233
Query: 470 EEM-TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI-------S 521
+ L L+ L+L +N L+ ++P + ++ L+ + N ++ ++ +
Sbjct: 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGV 291
Query: 522 SLTFLSHLNLSDNNLT 537
+ + ++L +N +
Sbjct: 292 KRAYYNGISLFNNPVP 307
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 46/245 (18%), Positives = 74/245 (30%), Gaps = 65/245 (26%)
Query: 105 IGKINPSLL-DLKHLVYLDLSNNNFENNQIP--VFLGFMGSLRHIDLSRAELTGMIPHQL 161
I K+ + L+++ +++ N EN+ F G L ++ +S A+LT IP L
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLT-GIPKDL 191
Query: 162 GNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNM 221
L L L HN I ++ DL
Sbjct: 192 --PETLNELHLD---HNKIQA----------------IELEDLLR--------------- 215
Query: 222 LPSLQVLKLSACSLHNSLPELP---IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278
L L L HN + + ++ +L L L N+ + VP+ L L L +
Sbjct: 216 YSKLYRLGLG----HNQIRMIENGSLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVV 269
Query: 279 DLGFN--------SFGGPIPDGLQNLTSLEHLDLRSNNFISSI---PTWLHKFTRLEYLS 327
L N F + L NN + P T +
Sbjct: 270 YLHTNNITKVGVNDFCPVGF--GVKRAYYNGISL-FNNPVPYWEVQPATFRCVTDRLAIQ 326
Query: 328 LRENR 332
+
Sbjct: 327 FGNYK 331
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 3e-22
Identities = 54/223 (24%), Positives = 82/223 (36%), Gaps = 24/223 (10%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT 176
+ L+L N + ++ F + L + LSR + + L NL L+L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF--- 120
Query: 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSL 235
N ++ + N LS LK L L + + S F N +PSL+ L L
Sbjct: 121 DNRLT----TIPN-GAFVYLSKLKELWLRNNPIESIPSYAF---NRIPSLRRLDLGEL-- 170
Query: 236 HNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
L + F S+L L+L+ +P+ L L L LDL N P
Sbjct: 171 -KRLSYISEGAFEGLSNLRYLNLAMCNL--REIPN-LTPLIKLDELDLSGNHLSAIRPGS 226
Query: 293 LQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQ 334
Q L L+ L + + I I L ++L N L
Sbjct: 227 FQGLMHLQKLWM-IQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 4e-21
Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 19/233 (8%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I I + L+HL L LS N+ +I F G + +L ++L LT +
Sbjct: 76 IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVY 134
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
L L+ L L +NPI + ++++ + + L+ LDL + + L
Sbjct: 135 LSKLKELWLR---NNPIE----SIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEG-LS 185
Query: 224 SLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
+L+ L L+ +L E+P + L LDLS N + P GL HL L +
Sbjct: 186 NLRYLNLA----MCNLREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240
Query: 283 NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQ 334
+ + NL SL ++L NN ++ +P LE + L N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 2e-20
Identities = 71/339 (20%), Positives = 115/339 (33%), Gaps = 75/339 (22%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C +L E+P ++ L+L N+ + + L HL L L N
Sbjct: 50 CV-RKNLREVPDGISTNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107
Query: 293 LQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351
L +L L+L +N +++IP ++L+ L LR N ++ I F
Sbjct: 108 FNGLANLNTLEL-FDNRLTTIPNGAFVYLSKLKELWLRNNPIE----------SIPSYAF 156
Query: 352 SGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNFSGTLPRCIN 409
+ + +L L L K I L++L L+L+ N I
Sbjct: 157 NR----------IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-----IP 201
Query: 410 NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIP 469
NLT ++ L L DLSGN+LS I
Sbjct: 202 NLTPLIK-----------------LDEL--------------------DLSGNHLSA-IR 223
Query: 470 EEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527
L+ LQ L + + + I N ++SL I+ + N L+ + L L
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282
Query: 528 HLNLSDNNLT---GKIPLGTQLQGFNASCFAGNNLCGAP 563
++L N + L ++ S A C P
Sbjct: 283 RIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 8e-20
Identities = 67/287 (23%), Positives = 117/287 (40%), Gaps = 50/287 (17%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
+ N ++P G + R ++L ++ + + +L +L+ L LS N I
Sbjct: 48 VICVRKNLR--EVP--DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS---RNHI 100
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSL 239
+E + +GL+ L L+L L+T + F L L+ L L +N +
Sbjct: 101 R----TIEIGA-FNGLANLNTLELFDNRLTTIPNGAF---VYLSKLKELWLR----NNPI 148
Query: 240 PELPIANFS---SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296
+P F+ SL LDL + + + GLS+L +L+L + IP+ L L
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPL 206
Query: 297 TSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355
L+ LDL N+ +S+I L+ L + ++++Q I N F
Sbjct: 207 IKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQ----------VIERNAFDN-- 253
Query: 356 PAWIGEKLLRNL-ILRLRSNKFDGQIPAELCR-LTSLHILDLSHNNF 400
L++L + L N +P +L L L + L HN +
Sbjct: 254 --------LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSG 509
V C+ + + I + LNL N + I N +R LE + S
Sbjct: 45 FSKVICVRKNLREVPDGISTN------TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSR 97
Query: 510 NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544
N + + + L L+ L L DN LT IP G
Sbjct: 98 NHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGA 131
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 8e-22
Identities = 59/312 (18%), Positives = 113/312 (36%), Gaps = 40/312 (12%)
Query: 233 CSLHN-SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD 291
C + SL +P ++ +LDLS N + S L +L L L N D
Sbjct: 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 292 GLQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350
+L SLEHLDL S N++S++ + W + L +L+L N + +GE
Sbjct: 95 SFSSLGSLEHLDL-SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK----------TLGETS 143
Query: 351 FSGNIPAWIGEKLLRNLILR-LRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN 409
++ ++ ++ F G LT L L++ ++ P+ +
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAG--------LTFLEELEIDASDLQSYEPKSLK 195
Query: 410 NLTAMMN---QENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSG 466
++ + + E + + ++ EL + LS
Sbjct: 196 SIQNVSHLILHMKQHILLLEIF-----VDVTSSVECLELRDT------DLDTFHFSELST 244
Query: 467 DIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI-SSLTF 525
+ +++ ++ L ++ + + + L ++FS N L +P I LT
Sbjct: 245 GETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTS 302
Query: 526 LSHLNLSDNNLT 537
L + L N
Sbjct: 303 LQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 60/300 (20%), Positives = 106/300 (35%), Gaps = 31/300 (10%)
Query: 109 NPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQ 168
N + L S+ + + + G +++ +DLS +T + L NLQ
Sbjct: 24 NQASLSCDRNGICKGSSGSLNS----IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQ 79
Query: 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQV 227
L L+ N I+ +E S L L+HLDL+ LS +S WF L SL
Sbjct: 80 ALVLT---SNGIN----TIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWF---KPLSSLTF 128
Query: 228 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG 287
L L ++ + L L + + + GL+ L L++ +
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188
Query: 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQGMISSVLVVFDI 346
P L+++ ++ HL L + + +E L LR+ L S L
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---- 243
Query: 347 GENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR 406
K +++ Q+ L +++ L L+ S N ++P
Sbjct: 244 -------TGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-SVPD 294
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 42/236 (17%), Positives = 87/236 (36%), Gaps = 29/236 (12%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQ-LG 162
+ ++ S L L +L+L N ++ + L+ + + + I +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 222
L L+ L++ + + E L + + HL L + F+ ++
Sbjct: 172 GLTFLEELEID---ASDLQ----SYEP-KSLKSIQNVSHLILHMKQHILLLEIFV--DVT 221
Query: 223 PSLQVLKLSACSLH----NSLPELPIANFS---SLYTLDLSYNEFDNTLVPSWLFGLSHL 275
S++ L+L L + L + + + ++ V L +S L
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--FQVMKLLNQISGL 279
Query: 276 VFLDLGFNSFGGPIPDG-LQNLTSLEHLDLRSNNF------ISSIPTWLHKFTRLE 324
+ L+ N +PDG LTSL+ + L +N + I + WL+K ++ E
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 334
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 1e-21
Identities = 53/223 (23%), Positives = 83/223 (37%), Gaps = 24/223 (10%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT 176
+ YL+L NN + Q F + L + L R + + L +L L+L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF--- 131
Query: 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSL 235
N ++ + + LS L+ L L + + S F N +PSL L L
Sbjct: 132 DNWLT----VIPS-GAFEYLSKLRELWLRNNPIESIPSYAF---NRVPSLMRLDLGEL-- 181
Query: 236 HNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
L + F +L L+L +P+ L L L L++ N F P
Sbjct: 182 -KKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPN-LTPLVGLEELEMSGNHFPEIRPGS 237
Query: 293 LQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQ 334
L+SL+ L + N+ +S I L L+L N L
Sbjct: 238 FHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 19/233 (8%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I I L HL L L N+ ++ F G + SL ++L LT +
Sbjct: 87 IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELFDNWLTVIPSGAFEY 145
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
L L+ L L +NPI + + + + L LDL + L
Sbjct: 146 LSKLRELWLR---NNPIES----IPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEG-LF 196
Query: 224 SLQVLKLSACSLHNSLPELP-IANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
+L+ L L ++ ++P + L L++S N F + P GLS L L +
Sbjct: 197 NLKYLNLG----MCNIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251
Query: 283 NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQ 334
+ + L SL L+L NN +SS+P L L L N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 4e-21
Identities = 66/287 (22%), Positives = 110/287 (38%), Gaps = 50/287 (17%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
+ + ++P G + R+++L + + +L +L+ L L N I
Sbjct: 59 VVCTRRGLS--EVP--QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG---RNSI 111
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSL 239
+E + +GL+ L L+L L+ S F L L+ L L +N +
Sbjct: 112 R----QIEVGA-FNGLASLNTLELFDNWLTVIPSGAF---EYLSKLRELWLR----NNPI 159
Query: 240 PELPIANFS---SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296
+P F+ SL LDL + + GL +L +L+LG + +P+ L L
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPL 217
Query: 297 TSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355
LE L++ S N I H + L+ L + +++ I N F G
Sbjct: 218 VGLEELEM-SGNHFPEIRPGSFHGLSSLKKLWVMNSQVS----------LIERNAFDG-- 264
Query: 356 PAWIGEKLLRNL-ILRLRSNKFDGQIPAELCR-LTSLHILDLSHNNF 400
L +L L L N +P +L L L L L HN +
Sbjct: 265 --------LASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 7e-20
Identities = 62/302 (20%), Positives = 98/302 (32%), Gaps = 73/302 (24%)
Query: 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRS 306
+ + + + VP + S+ +L+L N+ D ++L LE L L
Sbjct: 53 SNQFSKVVCTRRGL--SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQL-G 107
Query: 307 NNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLR 365
N I I + L L L +N L I F L
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLT----------VIPSGAFEY----------LS 147
Query: 366 NL-ILRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423
L L LR+N IP+ R+ SL LDL +
Sbjct: 148 KLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISE----------------- 189
Query: 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNL 483
F L L + ++L N+ D+P +T L+ L+ L +
Sbjct: 190 ----GAFE-GLFNL-----------------KYLNLGMCNIK-DMPN-LTPLVGLEELEM 225
Query: 484 SHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542
S N +I + SL+ + + +S + L L LNL+ NNL+ +P
Sbjct: 226 SGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283
Query: 543 GT 544
Sbjct: 284 DL 285
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-18
Identities = 66/288 (22%), Positives = 105/288 (36%), Gaps = 58/288 (20%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C+ L E+P S+ L+L N + L HL L LG NS I G
Sbjct: 61 CT-RRGLSEVPQGIPSNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQ-IEVG 117
Query: 293 -LQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSV------LVVF 344
L SL L+L +N+++ IP+ ++L L LR N ++ + S L+
Sbjct: 118 AFNGLASLNTLEL-FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176
Query: 345 DIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTL 404
D+GE I E L L L +P L L L L++S N+F
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIR 234
Query: 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464
P + L+++ ++L + + +
Sbjct: 235 PGSFHGLSSL----------------------------KKL------------WVMNSQV 254
Query: 465 SGDIPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGN 510
S I L +L LNL+HN L+ +P ++ +R L + N
Sbjct: 255 S-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 5e-16
Identities = 60/272 (22%), Positives = 90/272 (33%), Gaps = 76/272 (27%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278
L L+VL+L NS+ ++ + F +SL TL+L N + LS L L
Sbjct: 98 LHHLEVLQLG----RNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLREL 152
Query: 279 DLGFNSFGGPIPDG-LQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGM 336
L N IP + SL LDL + I L+YL+L ++
Sbjct: 153 WLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-- 209
Query: 337 ISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDL 395
++P L L L + N F P L+SL L +
Sbjct: 210 -----------------DMPNLTP---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 396 SHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVR 455
++ S + L + L L
Sbjct: 250 MNSQVSLIERNAFDGLAS--------------------LVEL------------------ 271
Query: 456 CMDLSGNNLSGDIPEEM-TNLLALQSLNLSHN 486
+L+ NNLS +P ++ T L L L+L HN
Sbjct: 272 --NLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 66/429 (15%), Positives = 137/429 (31%), Gaps = 93/429 (21%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
S L L LD N++ + + + + L + + +T + L NL YL
Sbjct: 37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYL 90
Query: 171 DLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
N ++ N ++ L+ L +L+ L+ L + P L L
Sbjct: 91 ACD---SNKLT-------NLD-VTPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNC 134
Query: 231 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP 290
+ N+L E+ +++ + L LD N + + + L LD FN +
Sbjct: 135 A----RNTLTEIDVSHNTQLTELDCHLN---KKITKLDVTPQTQLTTLDCSFNKITE-LD 186
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350
+ L L+ N I+ + L++ +L +L N+L D+
Sbjct: 187 --VSQNKLLNRLNC-DTNNITKLD--LNQNIQLTFLDCSSNKLTE--------IDVTP-- 231
Query: 351 FSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG-TLPRCI 408
L L N ++ + L+ L L + L
Sbjct: 232 -------------LTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNT 275
Query: 409 NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDI 468
+ ++ ++ +NT L L+ D ++ ++
Sbjct: 276 QLIYFQAEGCRKIKEL-------------------DVTHNTQLYLL---DCQAAGIT-EL 312
Query: 469 PEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSH 528
++ L L L++ L ++ V L+S+ + S+ + L++
Sbjct: 313 D--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FS-SVGKIPALNN 365
Query: 529 LNLSDNNLT 537
++
Sbjct: 366 NFEAEGQTI 374
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 36/225 (16%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
+ L LD S N + + L ++ +T + L L +
Sbjct: 164 LDVTPQTQLTTLDCSFNKITE----LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216
Query: 170 LDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
LD S N ++ ++ ++ L+ L + D + L+ L + L L L
Sbjct: 217 LDCS---SNKLT----EID----VTPLTQLTYFDCSVNPLTE-----LDVSTLSKLTTLH 260
Query: 230 LSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPI 289
L E+ + + + L + + + L LD +
Sbjct: 261 CI----QTDLLEIDLTHNTQLIYFQAEGC---RKIKELDVTHNTQLYLLDCQAAGI-TEL 312
Query: 290 PDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
L L +L L +N ++ + + T+L+ LS +Q
Sbjct: 313 D--LSQNPKLVYLYL-NNTELTELD--VSHNTKLKSLSCVNAHIQ 352
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 6e-13
Identities = 49/314 (15%), Positives = 91/314 (28%), Gaps = 46/314 (14%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
+ L YL+ + N + + L +D + + + L L
Sbjct: 122 DVSQNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175
Query: 171 DLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
D S N I+ L+ +S LL L+ +++ L N L L
Sbjct: 176 DCS---FNKIT----ELD----VSQNKLLNRLNCDTNNITK-----LDLNQNIQLTFLDC 219
Query: 231 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP 290
S N L E+ + + L D S N T + LS L L I
Sbjct: 220 S----SNKLTEIDVTPLTQLTYFDCSVNPL--TELDVS--TLSKLTTLHCIQTDLLE-ID 270
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM-ISSV--LVVFDIG 347
L + T L + I + + T+L L + + + +S LV +
Sbjct: 271 --LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326
Query: 348 ENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR 406
+ + L L + + ++ +L+ +
Sbjct: 327 NTELT-ELDV----SHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKE 379
Query: 407 CINNLTAMMNQENS 420
+ N + +
Sbjct: 380 TLTNNSLTIAVSPD 393
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 4e-21
Identities = 56/327 (17%), Positives = 103/327 (31%), Gaps = 91/327 (27%)
Query: 218 VTNMLPSLQVLKLSACSLHNSLPELP---IANFSSLYTLDLSYNEFDNTLVPSWLFGLSH 274
++ MLP LS S +N++ + + L + + ++
Sbjct: 1 MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60
Query: 275 LVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
L L + +PD L + L++ + N + S+P LEYL +NRL
Sbjct: 61 FSELQLNRLNLSS-LPDNL--PPQITVLEI-TQNALISLPELP---ASLEYLDACDNRLS 113
Query: 335 GMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILD 394
+P L++ L + +N+ +P L ++
Sbjct: 114 -------------------TLPELPAS--LKH--LDVDNNQLT-MLPELPALLEY---IN 146
Query: 395 LSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLV 454
+N + LP +L L
Sbjct: 147 ADNNQLT-MLPELPTSL-------------------------------EVL--------- 165
Query: 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLES----IDFSGN 510
+ N L+ +PE + L++L++S N L +P E N
Sbjct: 166 ---SVRNNQLT-FLPELPES---LEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCREN 217
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLT 537
++ IP++I SL + L DN L+
Sbjct: 218 RIT-HIPENILSLDPTCTIILEDNPLS 243
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 7e-17
Identities = 55/292 (18%), Positives = 97/292 (33%), Gaps = 62/292 (21%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174
L N + + + L+R L+ +P L + L+++
Sbjct: 33 WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLPP--QITVLEIT- 88
Query: 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234
N + S + L++LD LST + + SL+ L +
Sbjct: 89 --QNALI---------SLPELPASLEYLDACDNRLST------LPELPASLKHLDVD--- 128
Query: 235 LHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ 294
+N L LP + L ++ N+ T++P + L L + N +P+ +
Sbjct: 129 -NNQLTMLP-ELPALLEYINADNNQL--TMLPEL---PTSLEVLSVRNNQLTF-LPELPE 180
Query: 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLE----YLSLRENRLQGMISSVLVVFDIGENG 350
+ LE LD+ S N + S+P + E + RENR+
Sbjct: 181 S---LEALDV-STNLLESLPAVPVRNHHSEETEIFFRCRENRIT---------------- 220
Query: 351 FSGNIPAWIGEKLLRNLI-LRLRSNKFDGQIPAELCRLTSLHILDLSHNNFS 401
+IP I L + L N +I L + T+ FS
Sbjct: 221 ---HIPENILS--LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 58/308 (18%), Positives = 87/308 (28%), Gaps = 92/308 (29%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C L +P+ ++ + L N + + + +L L L N
Sbjct: 18 CP-QQGLQAVPVGIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 293 LQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351
L LE LDL N + S+ H RL L L LQ ++G F
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ----------ELGPGLF 125
Query: 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNL 411
G L +L L L N +L
Sbjct: 126 RG---------------------------------LAALQYLYLQDNALQALPDDTFRDL 152
Query: 412 TAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEE 471
L+ L L GN +S +PE
Sbjct: 153 GN--------------------LTHL--------------------FLHGNRIS-SVPER 171
Query: 472 M-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSI-SSLTFLSH 528
L +L L L N +A + + + L ++ N LS +P + L L +
Sbjct: 172 AFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQY 229
Query: 529 LNLSDNNL 536
L L+DN
Sbjct: 230 LRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 47/201 (23%), Positives = 72/201 (35%), Gaps = 19/201 (9%)
Query: 138 GFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLS 197
G + + I L ++ + NL L L N ++ ++ + +GL+
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH---SNVLAR----IDA-AAFTGLA 80
Query: 198 LLKHLDLTG-VDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 255
LL+ LDL+ L + F + L L L L C L L ++L L L
Sbjct: 81 LLEQLDLSDNAQLRSVDPATF---HGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL 136
Query: 256 SYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP 314
N +P F L +L L L N + L SL+ L L N ++ +
Sbjct: 137 QDNAL--QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL-HQNRVAHVH 193
Query: 315 TW-LHKFTRLEYLSLRENRLQ 334
RL L L N L
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 55/216 (25%), Positives = 78/216 (36%), Gaps = 16/216 (7%)
Query: 118 LVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTH 177
+ L N + F +L + L L + L L+ LDLS
Sbjct: 34 SQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS---D 89
Query: 178 NPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLH 236
N + F GL L L L L F L +LQ L L +L
Sbjct: 90 NAQ-LRSVDPATFH---GLGRLHTLHLDRCGLQELGPGLF---RGLAALQYLYLQDNALQ 142
Query: 237 NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296
+LP+ + +L L L N ++ GL L L L N P ++L
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 297 TSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLREN 331
L L L +NN +S++PT L L+YL L +N
Sbjct: 201 GRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 7e-17
Identities = 56/232 (24%), Positives = 80/232 (34%), Gaps = 30/232 (12%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSR-AELTGMIPHQLG 162
I + + ++L L L +N F G + L +DLS A+L + P
Sbjct: 44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFH 102
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNM 221
L L L L + L GL+ L++L L L D F
Sbjct: 103 GLGRLHTLHLD---RCGLQ----ELGP-GLFRGLAALQYLYLQDNALQALPDDTF---RD 151
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFS---SLYTLDLSYNEFDNTLVPSWLF-GLSHLVF 277
L +L L L N + +P F SL L L N V F L L+
Sbjct: 152 LGNLTHLFLH----GNRISSVPERAFRGLHSLDRLLLHQNRV--AHVHPHAFRDLGRLMT 205
Query: 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF-----ISSIPTWLHKFTRLE 324
L L N+ + L L +L++L L N + + WL KF
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSS 257
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 48/212 (22%), Positives = 74/212 (34%), Gaps = 31/212 (14%)
Query: 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 258
+ + L G +S +L +L L + L + + L LDLS N
Sbjct: 34 SQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90
Query: 259 EFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG-LQNLTSLEHLDLRSNNFISSIPT-W 316
++ P+ GL L L L + G + L +L++L L+ N + ++P
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNA-LQALPDDT 148
Query: 317 LHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNK 375
L +L L NR+ + E F G L +L L L N+
Sbjct: 149 FRDLGNLTHLFLHGNRIS----------SVPERAFRG----------LHSLDRLLLHQNR 188
Query: 376 FDGQIPAE-LCRLTSLHILDLSHNNFSGTLPR 406
+ L L L L NN S LP
Sbjct: 189 VA-HVHPHAFRDLGRLMTLYLFANNLS-ALPT 218
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 59/275 (21%), Positives = 85/275 (30%), Gaps = 74/275 (26%)
Query: 219 TNMLPSLQVLKLSACSLHNSLPELPIANFS---SLYTLDLSYNEFDNTLVPSWLFGLSHL 275
+ + Q + L N + +P A+F +L L L N + + GL+ L
Sbjct: 28 VGIPAASQRIFLH----GNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALL 82
Query: 276 VFLDLGFNSFGGPIPDG-LQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRL 333
LDL N+ + L L L L + + L+YL L++N L
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNAL 141
Query: 334 QGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHI 392
Q + ++ F L NL L L N+ L SL
Sbjct: 142 Q----------ALPDDTFRD----------LGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 393 LDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLK 452
L L N + P +L L L
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGR--------------------LMTL--------------- 206
Query: 453 LVRCMDLSGNNLSGDIPEE-MTNLLALQSLNLSHN 486
L NNLS +P E + L ALQ L L+ N
Sbjct: 207 -----YLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 47/259 (18%), Positives = 70/259 (27%), Gaps = 91/259 (35%)
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVLVVFDIG 347
+P G+ + + + L N IS +P L L L N L I
Sbjct: 26 VPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLA----------RID 72
Query: 348 ENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRC 407
F+G L L LDLS N ++
Sbjct: 73 AAAFTG---------------------------------LALLEQLDLSDNAQLRSVDP- 98
Query: 408 INNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD 467
TF L L L L L +
Sbjct: 99 --------------------ATFH-GLGRL-----HTL------------HLDRCGLQ-E 119
Query: 468 IPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSISSLTF 525
+ + L ALQ L L N L +P++ + +L + GN +S ++ L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 526 LSHLNLSDNNLTGKIPLGT 544
L L L N + +
Sbjct: 179 LDRLLLHQNRVA-HVHPHA 196
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 3e-19
Identities = 50/215 (23%), Positives = 76/215 (35%), Gaps = 16/215 (7%)
Query: 104 LIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMG-----SLRHIDLSRAELTGMIP 158
+ G P LL+ L+ N +L + L+ + +++A
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166
Query: 159 HQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWF-L 217
Q+ L LDLS NP L + L+ L L + T S
Sbjct: 167 EQVRVFPALSTLDLS---DNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222
Query: 218 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277
+ LQ L LS SL ++ S L +L+LS+ VP L + L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGLP--AKLSV 278
Query: 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISS 312
LDL +N P L + +L L+ N F+ S
Sbjct: 279 LDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 55/296 (18%), Positives = 91/296 (30%), Gaps = 35/296 (11%)
Query: 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG---LQNLTSLEHLDLR 305
SL L + + + + L L + I G + ++ L+ L L
Sbjct: 44 SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103
Query: 306 SNNFISSIPTWLHKFT--RLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKL 363
+ + P L + T L L+LR + + + W+ L
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA------------WLAELQQWLKPGL 151
Query: 364 LRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423
L + ++ +L LDLS N G T
Sbjct: 152 KV---LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------LISALCPLKFPT 202
Query: 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLL-ALQSLN 482
+ + + A L+ + DLS N+L + L SLN
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGL---DLSHNSLRDAAGAPSCDWPSQLNSLN 259
Query: 483 LSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538
LS L ++P+ + L +D S N L R P S L + +L+L N
Sbjct: 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 8e-18
Identities = 59/301 (19%), Positives = 94/301 (31%), Gaps = 45/301 (14%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFN---LQYLD 171
+ L YL + + + SL+ + + A + I + LQ L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 172 LSIDTHNPISFSFLYLENFSWLSGLSL-LKHLDLTGVDLSTASDWF--LVTNMLPSLQVL 228
L + L L L+L V +T W L + P L+VL
Sbjct: 102 LE-------NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154
Query: 229 KLSACSLHNSLPELPIANFSSLYTLDLSYN------EFDNTLVPSWLFGLSHLVFLDLGF 282
++ + + F +L TLDLS N + L P L L + G
Sbjct: 155 SIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 283 NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGMISSVL 341
+ G L+ LDL N+ + ++L L+L L+
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ------ 267
Query: 342 VVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFS 401
+P + KL +L L N+ D P+ L + L L N F
Sbjct: 268 -------------VPKGLPAKL---SVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPFL 309
Query: 402 G 402
Sbjct: 310 D 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 1e-13
Identities = 59/346 (17%), Positives = 95/346 (27%), Gaps = 90/346 (26%)
Query: 161 LGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTAS-DWFLVT 219
G +L+YL +DT L F+ + LK L + + + L
Sbjct: 39 YGGGRSLEYLLKRVDTE-------ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91
Query: 220 NMLPSLQVLKLSACSL-HNSLPELPIANFSSLYTLDLSYNE---FDNTLVPSWLFGLSHL 275
+ LQ L L + + P L A L L+L D L + L
Sbjct: 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTW----LHKFTRLEYLSLREN 331
L + + ++ +L LDL N + KF L+ L+LR
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211
Query: 332 RLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLH 391
+ G A L
Sbjct: 212 GM----------------------------------------ETPSGVCSALAAARVQLQ 231
Query: 392 ILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTML 451
LDLSHN+ + + +N N L++ +
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLN-------------------------LSFTGLK 266
Query: 452 KLVRCM-------DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
++ + + DLS N L P L + +L+L N
Sbjct: 267 QVPKGLPAKLSVLDLSYNRLDR-NPSP-DELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 47/260 (18%), Positives = 79/260 (30%), Gaps = 29/260 (11%)
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEK 362
+ S NF P W + L + L G S L + + K
Sbjct: 11 ESCSCNFSDPKPDW---SSAFNCLGAADVELYGGGRS-LEYLLKRVDTEADLGQFTDIIK 66
Query: 363 LLRNLILRLRSNKFDGQIPAELCRL---TSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419
L L +R+ + +I R+ + L L L + +GT P + T
Sbjct: 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126
Query: 420 SME----TDKEYDTFTIELSILVVMKGRELAYNTM----------LKLVRCMDLSGNNLS 465
++ ++ ++ + +K +A + +DLS N
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 466 GDIPEEMT----NLLALQSLNLSHNFLA---GKIPENVGAMRSLESIDFSGNLLSGRIPQ 518
G+ LQ L L + + G A L+ +D S N L
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
Query: 519 SISS-LTFLSHLNLSDNNLT 537
+ L+ LNLS L
Sbjct: 247 PSCDWPSQLNSLNLSFTGLK 266
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 457 MDLSGNNLSGDIPEEMTNL--LALQSLNLSHNFLAGKIPENVG----AMRSLESIDFSGN 510
+ L ++G P + L LNL + A + L+ + +
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQL 546
+ + LS L+LSDN G+ L + L
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 9e-19
Identities = 86/462 (18%), Positives = 159/462 (34%), Gaps = 66/462 (14%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I ++ S + L L L +S+N + I VF F L ++DLS +L + H N
Sbjct: 33 ISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKISCHPTVN 91
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
L ++LDLS N L +S LK L L+ L +
Sbjct: 92 L---KHLDLS---FNAFD----ALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIA 136
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT----LVPSWLFGLSHLVFLD 279
L + K+ + T L N ++ + +++L +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196
Query: 280 LGFNSFGGPIPDGLQNLTSLE------HLDLRSNNFISSIPTWLHKF---TRLEYLSLRE 330
+ L L L+ +L L + + + + T + Y S+
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256
Query: 331 NRLQGMISS-----------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ 379
+LQG + L + + + F ++I E I +
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMV 315
Query: 380 IPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN---QENSMETDKEYDTFTIELSI 436
+++ LD S+N + T+ +LT + Q N ++ +
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE--------LSKIA 367
Query: 437 LVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPEN 495
+ + + L +D+S N++S D + + +L SLN+S N L I
Sbjct: 368 EMTTQMKSLQQ---------LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 496 VGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
+ ++ +D N + IP+ + L L LN++ N L
Sbjct: 419 L--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 5e-18
Identities = 64/391 (16%), Positives = 124/391 (31%), Gaps = 30/391 (7%)
Query: 166 NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 225
L++S N IS L + LS L+ L ++ + V L
Sbjct: 22 KTTILNIS---QNYIS----ELWTSD-ILSLSKLRILIISHNRIQYLDI--SVFKFNQEL 71
Query: 226 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF 285
+ L LS HN L ++ +L LDLS+N FD + +S L FL L
Sbjct: 72 EYLDLS----HNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 286 GGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFD 345
+ +L + L + + SL ++ D
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFIL--D 183
Query: 346 IGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
+ + + I L N S Q +L LT +I ++
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243
Query: 406 RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN----------TMLKLVR 455
+ ++ ++ F + L + ++ + + +
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303
Query: 456 CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS-- 513
+ + + + + L+ S+N L + EN G + LE++ N L
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363
Query: 514 GRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544
+I + + + L L++S N+++ G
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 4e-17
Identities = 84/446 (18%), Positives = 150/446 (33%), Gaps = 67/446 (15%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
+D S N + V +++S+ ++ + + +L L+ L +S HN I
Sbjct: 5 VDRSKNGLIH----VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIIS---HNRI 57
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLP 240
YL+ S L++LDL+ L S + +L+ L LS N+
Sbjct: 58 Q----YLDI-SVFKFNQELEYLDLSHNKLVKISC-----HPTVNLKHLDLS----FNAFD 103
Query: 241 ELPIA----NFSSLYTLDLSYNEFDNTLVPSWLFGLSHL-VFLDLGFNSFGGPIPDGLQN 295
LPI N S L L LS + + L+ V L LG P+GLQ+
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162
Query: 296 LTSLE-HLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSG 353
+ H+ +N I + LE +++ S L + +
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222
Query: 354 NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTA 413
+ + N +R+ T++ +S+ G L + +
Sbjct: 223 SNLTLNNIETTWNSFIRILQLV----------WHTTVWYFSISNVKLQGQLDFRDFDYS- 271
Query: 414 MMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKL------------------VR 455
S++ + + + +
Sbjct: 272 ----GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327
Query: 456 CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA---MRSLESIDFSGNLL 512
+D S N L+ + E +L L++L L N L ++ + M+SL+ +D S N +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 513 SGRIPQSI-SSLTFLSHLNLSDNNLT 537
S + S L LN+S N LT
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILT 412
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 9e-17
Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 17/230 (7%)
Query: 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMG-SLRHIDLSRAELTGMIPHQLGNLF 165
+ S LK L + ++ F Q ++ F ++++ +S + M+ +
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS--KIS 324
Query: 166 NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 225
+LD S +N + EN L+ L+ L L L S +T + SL
Sbjct: 325 PFLHLDFS---NN--LLTDTVFENCG---HLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 226 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF 285
Q L +S S+ + + SL +L++S N + + L + LDL N
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-TIFRCL--PPRIKVLDLHSNKI 433
Query: 286 GGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQ 334
IP + L +L+ L++ ++N + S+P + T L+ + L N
Sbjct: 434 KS-IPKQVVKLEALQELNV-ASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 87.9 bits (217), Expect = 2e-18
Identities = 51/233 (21%), Positives = 86/233 (36%), Gaps = 36/233 (15%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
I +I P + +L + + V + S+ I + +++ + + L
Sbjct: 11 IKQIFP-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQG--IQYL 64
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
N+ L L+ N ++ + L+ L L L L + S L L
Sbjct: 65 PNVTKLFLN---GNKLT-------DIKPLTNLKNLGWLFLDENKIKDLS--SL--KDLKK 110
Query: 225 LQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
L+ L L HN + ++ + + L +L L N+ + + L L+ L L L N
Sbjct: 111 LKSLSLE----HNGISDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDN 163
Query: 284 SFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
I D L LT L++L L S N IS + L L+ L L
Sbjct: 164 ----QISDIVPLAGLTKLQNLYL-SKNHISDLRA-LAGLKNLDVLELFSQECL 210
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 1e-16
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
+ +L + + +N++ ++ Q + ++ ++ + L+ +LT + P L NL NL +
Sbjct: 37 VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91
Query: 170 LDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
L L N I + S L L LK L L +S + LP L+ L
Sbjct: 92 LFLD---ENKIK-------DLSSLKDLKKLKSLSLEHNGISDING----LVHLPQLESLY 137
Query: 230 LSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP 288
L +N + ++ ++ + L TL L N+ + L GL+ L L L N
Sbjct: 138 LG----NNKITDITVLSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSKN----H 186
Query: 289 IPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
I D L L +L+ L+L S ++ + + L
Sbjct: 187 ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 1e-13
Identities = 52/297 (17%), Positives = 93/297 (31%), Gaps = 82/297 (27%)
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD--GLQNLTSLE 300
P F+ +L + L+ + + + I G+Q L ++
Sbjct: 16 PDDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSD----IKSVQGIQYLPNVT 68
Query: 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIG 360
L L + N ++ I L L +L L EN+++ D+ +
Sbjct: 69 KLFL-NGNKLTDIKP-LTNLKNLGWLFLDENKIK----------DL--SSLKD------- 107
Query: 361 EKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419
L+ L L L N I L L L L L +N I ++T +
Sbjct: 108 ---LKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNK--------ITDITVLSRLTK 154
Query: 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQ 479
L L L N +S DI + L LQ
Sbjct: 155 --------------LDTL--------------------SLEDNQIS-DI-VPLAGLTKLQ 178
Query: 480 SLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536
+L LS N + + +++L+ ++ + S+L + + +D +L
Sbjct: 179 NLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 4e-13
Identities = 58/348 (16%), Positives = 99/348 (28%), Gaps = 111/348 (31%)
Query: 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL-PIANFSSLY 251
+ +L ++ A N L S+ + + ++ + + I ++
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVTQ----NELNSIDQIIAN----NSDIKSVQGIQYLPNVT 68
Query: 252 TLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD--GLQNLTSLEHLDLRSNNF 309
L L+ N+ + L L +L +L L N I D L++L L+ L L N
Sbjct: 69 KLFLNGNKLTDI---KPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNG- 120
Query: 310 ISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLIL 369
IS I L +LE L L N++ +
Sbjct: 121 ISDING-LVHLPQLESLYLGNNKITDITV------------------------------- 148
Query: 370 RLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDT 429
L RLT L L L N I+++ +
Sbjct: 149 --------------LSRLTKLDTLSLEDNQ--------ISDIVPLAGLTK---------- 176
Query: 430 FTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLA 489
L L LS N++S D+ + L L L L
Sbjct: 177 ----LQNL--------------------YLSKNHIS-DL-RALAGLKNLDVLELFSQECL 210
Query: 490 GKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
K + + ++ + L P+ IS N+ +
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 47/200 (23%)
Query: 364 LRNLI-LRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSME 422
I L+ + L S+ + ++++ + + + N
Sbjct: 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-----SVQGIQYLPN------ 66
Query: 423 TDKEYDTFTIELSILVVMKGRELAYN--------TMLKLVRCMDLSGNNLSGDIPEEMTN 474
++ L L N T LK + + L N + D+ + +
Sbjct: 67 -----------VTKL------FLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DL-SSLKD 107
Query: 475 LLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534
L L+SL+L HN ++ I + + LES+ N ++ +S LT L L+L DN
Sbjct: 108 LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163
Query: 535 NLTGKIPLG--TQLQGFNAS 552
++ +PL T+LQ S
Sbjct: 164 QISDIVPLAGLTKLQNLYLS 183
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 84/458 (18%), Positives = 155/458 (33%), Gaps = 60/458 (13%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
I ++ + L L L LS+N + VF F L ++D+S L I
Sbjct: 64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHVF-LFNQDLEYLDVSHNRLQN-IS--CCP 119
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
+ +L++LDLS N F L L+ L L L+ + L
Sbjct: 120 MASLRHLDLS---FND----FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
+ L L + + E +++ L N + V + L HL ++ N
Sbjct: 173 CIL-LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231
Query: 284 SFGGP----IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKF---TRLEYLSLRENRLQGM 336
L +L ++ L+ L +F +EYL++ +
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291
Query: 337 IS-----------SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC 385
I L++ + F + I L + D +C
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSIS--DTPFIHMVC 348
Query: 386 --RLTSLHILDLSHNNFSGTLPR---CINNLTAMMNQENSMETDKEYDTFTIELSILVVM 440
+S L+ + N F+ ++ + + L ++ Q N ++ + T +S L
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL--- 405
Query: 441 KGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLA-LQSLNLSHNFLAGKIPENVGAM 499
+D+S N+L+ + + LNLS N L G + +
Sbjct: 406 --------------ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449
Query: 500 RSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
++ +D N + IP+ ++ L L LN++ N L
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 2e-17
Identities = 70/433 (16%), Positives = 140/433 (32%), Gaps = 56/433 (12%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174
+ L +LDLS N+F+ + G + L + LS A+ + +L + L +
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDL 178
Query: 175 DTHNP--ISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 232
+++ L + N + L + L V++S + L + +
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG--GPIP 290
+ + L P +L ++ ++ W + +L +L
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350
L SL +++ F+ S F + L + +V
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP---FIHMVCPPS---- 351
Query: 351 FSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN 409
+ L N F + L L L L N +
Sbjct: 352 -------------PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVAL 397
Query: 410 NLTAMM------NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN 463
M NS+ + YD ++V+ +LS N
Sbjct: 398 MTKNMSSLETLDVSLNSLNSH-AYDRTCAWAESILVL-----------------NLSSNM 439
Query: 464 LSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI-SS 522
L+G + + + + L+L +N + IP++V +++L+ ++ + N L +P +
Sbjct: 440 LTGSVFRCLPPKV--KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495
Query: 523 LTFLSHLNLSDNN 535
LT L ++ L DN
Sbjct: 496 LTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 8e-13
Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 15/222 (6%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
S LK L+ + N F ++ ++ F + LS ++ + + + +L
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358
Query: 171 DLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
+ + N F+ + S L L+ L L L L+T + SL+ L +
Sbjct: 359 NFT---QN--VFTDSVFQGCS---TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410
Query: 231 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP 290
S SL++ + A S+ L+LS N V L + LDL N IP
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SVFRCL--PPKVKVLDLHNNRIMS-IP 466
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLREN 331
+ +L +L+ L++ ++N + S+P + T L+Y+ L +N
Sbjct: 467 KDVTHLQALQELNV-ASNQLKSVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 17/198 (8%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174
+ LS ++ + S ++ ++ T + L LQ L L
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPS-PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ- 385
Query: 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234
N + F + +S L+ LD++ L++ + S+ VL LS+
Sbjct: 386 --RNGLKNFF---KVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNLSSNM 439
Query: 235 LHNSLPE-LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG- 292
L S+ LP + LDL N + +P + L L L++ N +PDG
Sbjct: 440 LTGSVFRCLP----PKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLKS-VPDGV 492
Query: 293 LQNLTSLEHLDLRSNNFI 310
LTSL+++ L N +
Sbjct: 493 FDRLTSLQYIWLHDNPWD 510
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 9e-11
Identities = 58/305 (19%), Positives = 100/305 (32%), Gaps = 19/305 (6%)
Query: 109 NPSLLDLKHLVYLDLSNNNFENNQIPVFLGF-MGSLRHIDLSRAELTGMIPHQLGNLFNL 167
+ + L +L LSN + + F R L L + ++
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270
Query: 168 QYLDLSIDTHNPIS----FSFLYLENFSWLSG-LSLLKHLDLTGVDLSTASDWFLVTNML 222
Q+ + I + E F++ L L + + + + ++
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA--LYSVF 328
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
+ + LS + + + SS L+ + N F V L L L L
Sbjct: 329 AEMNIKMLSISDT-PFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQR 386
Query: 283 NSFG--GPIPDGLQNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQGMISS 339
N + +N++SLE LD+ N+ S + L+L N L G +
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446
Query: 340 VLV----VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDL 395
L V D+ N +IP + L L + SN+ RLTSL + L
Sbjct: 447 CLPPKVKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504
Query: 396 SHNNF 400
N +
Sbjct: 505 HDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 45/268 (16%), Positives = 80/268 (29%), Gaps = 29/268 (10%)
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLEYLSLRENRLQGMISSV------L 341
+P L + L L S N IS + + + L L L NR++ + V L
Sbjct: 46 VPKDL--PPRTKALSL-SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102
Query: 342 VVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIP--AELCRLTSLHILDLSHN 398
D+ N NI + +L L L N FD +P E LT L L LS
Sbjct: 103 EYLDVSHNRLQ-NISC----CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAA 156
Query: 399 NFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMD 458
F + +L + + + + N++ + M
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216
Query: 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQ 518
++ L ++ + + L + E L +
Sbjct: 217 VN--------ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268
Query: 519 SISSL--TFLSHLNLSDNNLTGKIPLGT 544
+ +LN+ + +T +I
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREE 296
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 8e-17
Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 41/278 (14%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
I I P L + + + +N + V + + + +T + + L
Sbjct: 9 INVIFP-DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEG--VQYL 62
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
NL L+L N I+ + + L L+ + L+L+G L S + L S
Sbjct: 63 NNLIGLELK---DNQIT-------DLAPLKNLTKITELELSGNPLKNVSA---IAG-LQS 108
Query: 225 LQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
++ L L+ + ++ P+A S+L L L N+ N S L GL++L +L +G
Sbjct: 109 IKTLDLT----STQITDVTPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNA 161
Query: 284 SFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS--- 338
+ D L NL+ L L +N IS I L L + L+ N++ +
Sbjct: 162 Q----VSDLTPLANLSKLTTLKA-DDNKISDISP-LASLPNLIEVHLKNNQISDVSPLAN 215
Query: 339 -SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNK 375
S L + + + N P + L+ +++ S
Sbjct: 216 TSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSGA 252
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 48/301 (15%), Positives = 99/301 (32%), Gaps = 80/301 (26%)
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302
P ++ + + + L + L +G+Q L +L L
Sbjct: 14 PDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGL 68
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEK 362
+L +N I+ + L T++ L L N L+ + + +G
Sbjct: 69 EL-KDNQITDLAP-LKNLTKITELELSGNPLKNV------------SAIAG--------- 105
Query: 363 LLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM 421
L+++ L L S + P L L++L +L L N I N++ + N
Sbjct: 106 -LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ--------ITNISPLAGLTN-- 152
Query: 422 ETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSL 481
L L + +S D+ + NL L +L
Sbjct: 153 ------------LQYL--------------------SIGNAQVS-DL-TPLANLSKLTTL 178
Query: 482 NLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541
N ++ I + ++ +L + N +S +++ + L + L++ +T +
Sbjct: 179 KADDNKIS-DIS-PLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPV 234
Query: 542 L 542
Sbjct: 235 F 235
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 8e-10
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 33/206 (16%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
L +L + L+LS N +N + + + S++ +DL+ ++T + P L L NLQ
Sbjct: 79 APLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133
Query: 170 LDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTG---VDLSTASDWFLVTNMLPSLQ 226
L L N I+ N S L+GL+ L++L + DL+ ++ L L
Sbjct: 134 LYLD---LNQIT-------NISPLAGLTNLQYLSIGNAQVSDLTPLAN-------LSKLT 176
Query: 227 VLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF 285
LK N + ++ P+A+ +L + L N+ + S L S+L + L +
Sbjct: 177 TLKAD----DNKISDISPLASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLTNQTI 229
Query: 286 GGPIPDGLQNLTSLEHLDLRSNNFIS 311
NL + S I+
Sbjct: 230 TNQPVFYNNNLVVPNVVKGPSGAPIA 255
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 40/284 (14%), Positives = 95/284 (33%), Gaps = 77/284 (27%)
Query: 271 GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330
L++ + + G ++ + +L + L +++I + L L L++
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKD 72
Query: 331 NRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSL 390
N++ ++ + + L + L L N + + + L S+
Sbjct: 73 NQIT-DLAPL--------------------KNLTKITELELSGNPL--KNVSAIAGLQSI 109
Query: 391 HILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTM 450
LDL+ + + L + N L +L
Sbjct: 110 KTLDLTSTQITD-----VTPLAGLSN-----------------LQVL------------- 134
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
L N ++ +I + L LQ L++ + ++ + + + L ++ N
Sbjct: 135 -------YLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDN 183
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNAS 552
+S ++SL L ++L +N ++ PL + L +
Sbjct: 184 KISD--ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 24/180 (13%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
I + P L L +L L L N N I L + +L+++ + A+++ + P L NL
Sbjct: 119 ITDVTP-LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSDLTP--LANL 172
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
L L N IS + S L+ L L + L +S S +
Sbjct: 173 SKLTTLKAD---DNKIS-------DISPLASLPNLIEVHLKNNQISDVS----PLANTSN 218
Query: 225 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS 284
L ++ L+ + ++ P+ ++L ++ + P+ + +L +N
Sbjct: 219 LFIVTLT----NQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNL 274
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 6e-16
Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 36/233 (15%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
I +I + +L + + V + S+ I + +++ + + L
Sbjct: 14 IKQIFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQG--IQYL 67
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
N+ L L+ N ++ + L+ L L L L + S L
Sbjct: 68 PNVTKLFLN---GNKLT-------DIKPLANLKNLGWLFLDENKVKDLSS----LKDLKK 113
Query: 225 LQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
L+ L L HN + ++ + + L +L L N+ + + L L+ L L L N
Sbjct: 114 LKSLSLE----HNGISDINGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDN 166
Query: 284 SFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
I D L LT L++L L S N IS + L L+ L L
Sbjct: 167 ----QISDIVPLAGLTKLQNLYL-SKNHISDLRA-LAGLKNLDVLELFSQECL 213
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 7e-13
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 33/227 (14%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
+ +L + + +N++ ++ Q + ++ ++ + L+ +LT + P L NL NL +
Sbjct: 40 VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94
Query: 170 LDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
L L N + + S L L LK L L +S + LP L+ L
Sbjct: 95 LFLD---ENKVK-------DLSSLKDLKKLKSLSLEHNGISDING----LVHLPQLESLY 140
Query: 230 LSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP 288
L +N + ++ ++ + L TL L N+ + +VP L GL+ L L L N
Sbjct: 141 LG----NNKITDITVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKN----H 189
Query: 289 IPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333
I D L L +L+ L+L S ++ + + L
Sbjct: 190 ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 49/273 (17%), Positives = 89/273 (32%), Gaps = 63/273 (23%)
Query: 271 GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330
+ + +L S + L S++ + +N+ I S+ + + L L
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIA-NNSDIKSVQG-IQYLPNVTKLFLNG 77
Query: 331 NRLQGMISSV-----LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAEL 384
N+L I + L + EN + K L+ L L L N I L
Sbjct: 78 NKLT-DIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING-L 130
Query: 385 CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRE 444
L L L L +N + I L+ + L L
Sbjct: 131 VHLPQLESLYLGNNKIT-----DITVLSRLTK-----------------LDTL------- 161
Query: 445 LAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLES 504
L N +S DI + L LQ+L LS N ++ + + +++L+
Sbjct: 162 -------------SLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDV 204
Query: 505 IDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
++ + S+L + + +D +L
Sbjct: 205 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 52/282 (18%), Positives = 100/282 (35%), Gaps = 43/282 (15%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
+ +IP + + +L + +L+ +++S N +
Sbjct: 14 FLCQESKV--TEIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS---QNDV 66
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGV-DLST-ASDWFLVTNMLPSLQVLKLSACSLHNS 238
+ + FS L L + + +L + F LP+LQ L +S +
Sbjct: 67 L-EVIEADVFS---NLPKLHEIRIEKANNLLYINPEAF---QNLPNLQYLLISNTGIK-H 118
Query: 239 LPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH-LVFLDLGFNSFGGPIPDGLQNLT 297
LP++ + LD+ N +T+ + GLS V L L N I + N T
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGT 177
Query: 298 SLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIP 356
L+ L+L NN + +P H + L + R+ ++P
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-------------------SLP 218
Query: 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHN 398
++ E L + + K ++P L +L +L L++
Sbjct: 219 SYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 50/223 (22%), Positives = 82/223 (36%), Gaps = 31/223 (13%)
Query: 115 LKHLVYLDLSNNNFENNQIP--VFLGFMGSLRHIDLSRA-ELTGMIPHQLGNLFNLQYLD 171
L +++S N+ I VF + L I + +A L + P NL NLQYL
Sbjct: 53 FGDLEKIEISQNDVLEV-IEADVFSN-LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110
Query: 172 LSIDTHNPIS----FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 227
+S + I ++ L + ++++ ++ + F + +
Sbjct: 111 IS---NTGIKHLPDVHKIHSLQ---KVLLDIQDNINIHTIE----RNSF--VGLSFESVI 158
Query: 228 LKLSACSLHNSLPELPIANFS--SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF 285
L L+ N + E+ + F+ L L+LS N L G S V LD+
Sbjct: 159 LWLN----KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214
Query: 286 GGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328
GL+NL L + +PT L K L SL
Sbjct: 215 HSLPSYGLENLKKLRARSTYNL---KKLPT-LEKLVALMEASL 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 6e-12
Identities = 44/371 (11%), Positives = 94/371 (25%), Gaps = 78/371 (21%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C + + E+P + L + + G L +++ N I
Sbjct: 16 CQ-ESKVTEIPSDLPRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 293 -LQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350
NL L + + N + I L+YL + ++
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK---------------- 117
Query: 351 FSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR---- 406
L +LD+ N T+ R
Sbjct: 118 -------------------HLPDVHKIH--------SLQKVLLDIQDNINIHTIERNSFV 150
Query: 407 -CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS 465
+ +N ++ F +L NNL
Sbjct: 151 GLSFESVILWLNKNGIQEIHN-SAF------------------NGTQLDELNLSDNNNLE 191
Query: 466 GDIPEEM-TNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT 524
++P ++ L++S + +P + +L+ + ++P ++ L
Sbjct: 192 -ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TLEKLV 246
Query: 525 FLSHLNLSDN-NLTGKIPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNVPIPAENENGS 583
L +L+ + Q+ + C Q + +NE+
Sbjct: 247 ALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSY 306
Query: 584 EDEDEMGYWLY 594
+M Y +
Sbjct: 307 SRGFDMTYTEF 317
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 6e-14
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 49/205 (23%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
+ + L Y+ L+N N + LTG + N++ L
Sbjct: 39 TEAQMNSLTYITLANINVTD----------------------LTG-----IEYAHNIKDL 71
Query: 171 DLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
++ + + N++ +SGLS L+ L + G D+++ L + L SL +L +
Sbjct: 72 TIN---NIHAT-------NYNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSLTLLDI 119
Query: 231 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP 290
S + +S+ I + ++DLSYN ++P L L L L++ F+ +
Sbjct: 120 SHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG----VH 172
Query: 291 D--GLQNLTSLEHLDLRSNNFISSI 313
D G+++ L L + I
Sbjct: 173 DYRGIEDFPKLNQLYA-FSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-12
Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 32/183 (17%)
Query: 222 LPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
+ SL + L+ + ++ +L I ++ L ++ N + + GLS+L L +
Sbjct: 43 MNSLTYITLA----NINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRI 95
Query: 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV 340
L LTSL LD+ + SI T ++ ++ + L N I +
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155
Query: 341 LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNN 399
K L L L ++ + + L+ L
Sbjct: 156 ---------------------KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192
Query: 400 FSG 402
G
Sbjct: 193 IGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517
+ G +++ D ++ L +L L++SH+ I + + + SID S N I
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152
Query: 518 QSISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNAS 552
+ +L L LN+ + + + +L A
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517
++ + + + ++ L L+ L + + N+ + SL +D S + I
Sbjct: 72 TINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 518 QSISSLTFLSHLNLSDNNLTGKI 540
I++L ++ ++LS N I
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI 152
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 47/268 (17%), Positives = 81/268 (30%), Gaps = 95/268 (35%)
Query: 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
+ LG +S I + + SL ++ L +N ++ + T + ++ L++
Sbjct: 22 FKAYLNGLLGQSS-TANITEA--QMNSLTYITL-ANINVTDL-TGIEYAHNIKDLTINNI 76
Query: 332 RLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSL 390
+ N SG L NL LR+ L LTSL
Sbjct: 77 HAT----------NY--NPISG----------LSNLERLRIMGKDVTSDKIPNLSGLTSL 114
Query: 391 HILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTM 450
+LD+SH+ ++ IN L +++ +
Sbjct: 115 TLLDISHSAHDDSILTKINTLP--------------------KVNSI------------- 141
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
DLS N DI + L L+SLN+ + + D+ G
Sbjct: 142 -------DLSYNGAITDI-MPLKTLPELKSLNIQFDGVH----------------DYRG- 176
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLTG 538
I L+ L + G
Sbjct: 177 ---------IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 21/130 (16%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
NP + L +L L + + +++IP L + SL +D+S + I ++ L
Sbjct: 78 ATNYNP-ISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTG---VDLSTASDWFLVTNM 221
+ +DLS +N + + L L LK L++ D D
Sbjct: 136 PKVNSIDLS---YNG------AITDIMPLKTLPELKSLNIQFDGVHDYRGIED------- 179
Query: 222 LPSLQVLKLS 231
P L L
Sbjct: 180 FPKLNQLYAF 189
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 38/302 (12%), Positives = 83/302 (27%), Gaps = 95/302 (31%)
Query: 238 SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGL-QN 295
+P LP S TL L +PS F L ++ + + + + N
Sbjct: 25 RIPSLP----PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78
Query: 296 LTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGN 354
L+ + H+++R+ ++ I L + L++L + L+
Sbjct: 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-------------------M 119
Query: 355 IPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414
P + IL+++ N + ++P
Sbjct: 120 FPDLTK-----------------------VYSTDIFFILEITDNPYMTSIPV-------- 148
Query: 415 MNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTN 474
+ F + + L N + + N
Sbjct: 149 -------------NAFQ-----------------GLCNETLTLKLYNNGFT-SVQGYAFN 177
Query: 475 LLALQSLNLSHNFLAGKIPENV--GAMRSLESIDFSGNLLS---GRIPQSISSLTFLSHL 529
L ++ L+ N I ++ G +D S ++ + + + L +
Sbjct: 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237
Query: 530 NL 531
L
Sbjct: 238 TL 239
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 8e-12
Identities = 42/220 (19%), Positives = 86/220 (39%), Gaps = 23/220 (10%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
++ + +IP S + + L L + H NL N+ + +SID +
Sbjct: 16 FRVTCKDI--QRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID--VTL 68
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTG-VDLST-ASDWFLVTNMLPSLQVLKLSACSLHNS 238
LE+ S LS + H+++ +L+ D LP L+ L + L
Sbjct: 69 QQ----LESHS-FYNLSKVTHIEIRNTRNLTYIDPDALKE---LPLLKFLGIFNTGL-KM 119
Query: 239 LPELP-IANFSSLYTLDLSYNEFDNTLVPSWLFGL-SHLVFLDLGFNSFGGPIPDGLQNL 296
P+L + + + L+++ N + ++ + GL + + L L N F + N
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG 178
Query: 297 TSLEHLDLRSNNFISSIPTWL--HKFTRLEYLSLRENRLQ 334
T L+ + L N +++ I ++ L + + +
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 28/190 (14%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLG 281
LP++ + +S L N S + +++ + P L L L FL +
Sbjct: 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113
Query: 282 FNSFGGPIPDG--LQNLTSLEHLDLRSNNFISSIPTWL--HKFTRLEYLSLRENRLQGMI 337
PD + + L++ N +++SIP L L N
Sbjct: 114 NTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--- 169
Query: 338 SSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCR--LTSLHILDL 395
+ F+G + + L NK+ I + + +LD+
Sbjct: 170 -------SVQGYAFNG----------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212
Query: 396 SHNNFSGTLP 405
S + + LP
Sbjct: 213 SQTSVT-ALP 221
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 44/222 (19%)
Query: 115 LKHLVYLDLSNNNFENNQIP--VFLGFMGSLRHIDLSRA-ELTGMIPHQLGNLFNLQYLD 171
L ++ + +S + Q+ F + + HI++ LT + P L L L++L
Sbjct: 54 LPNISRIYVSIDV-TLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111
Query: 172 LSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 231
+ + + + + + + L++T + S+
Sbjct: 112 IF---NTGLK----MFPDLTKVYSTDIFFILEITD------------NPYMTSIP----- 147
Query: 232 ACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD 291
N+ L + TL L N F T V + F + L + L N + I
Sbjct: 148 ----VNAFQGLC----NETLTLKLYNNGF--TSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197
Query: 292 G-LQNLTS-LEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
+ S LD+ S ++++P+ L+ L R
Sbjct: 198 DAFGGVYSGPSLLDV-SQTSVTALPSKG--LEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 458 DLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGR 515
+S + + NL + + + + I + + L+ + L
Sbjct: 61 YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-M 119
Query: 516 IPQ--SISSLTFLSHLNLSDNNLTGKIPLGT 544
P + S L ++DN IP+
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 36/190 (18%)
Query: 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI----NNLTAMMNQE 418
L+ + + S+ F L ++ + +S + L + +T + +
Sbjct: 38 LIETHLRTIPSHAFSN--------LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 419 NSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEE--MTNLL 476
T + D EL +L + + + L P+ + +
Sbjct: 90 TRNLTYIDPDALK-ELPLL-----------------KFLGIFNTGLK-MFPDLTKVYSTD 130
Query: 477 ALQSLNLSHNFLAGKIPENV--GAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534
L ++ N IP N G ++ N + + + T L + L+ N
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189
Query: 535 NLTGKIPLGT 544
I
Sbjct: 190 KYLTVIDKDA 199
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 20/199 (10%)
Query: 142 SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLEN--FSWLSGLSLL 199
S +++DLS L + + + LQ LDLS I +E+ + LS L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLS---RCEIQ----TIEDGAYQ---SLSHL 78
Query: 200 KHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 258
L LTG + + A F + L SLQ L +L SL PI + +L L++++N
Sbjct: 79 STLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134
Query: 259 EFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLR---SNNFISSIPT 315
+ +P + L++L LDL N L+ L + L+L S N ++ I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 316 WLHKFTRLEYLSLRENRLQ 334
K RL+ L+L N+L+
Sbjct: 195 GAFKEIRLKELALDTNQLK 213
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 32/232 (13%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
+ + L LDLS + + + L + L+ + +
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSG 98
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
L +LQ L ++ LENF + L LK L++ + + +N L
Sbjct: 99 LSSLQKLVAV---ETNLA----SLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSN-LT 149
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSL-------YTLDLSYNEFDNTLVPSWLFGLSHLV 276
+L+ L LS N + + + L +LDLS N + F L
Sbjct: 150 NLEHLDLS----SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLK 203
Query: 277 FLDLGFNSFGGPIPDG-LQNLTSLEHLDLRSNNF------ISSIPTWLHKFT 321
L L N +PDG LTSL+ + L +N + I + WL+K +
Sbjct: 204 ELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 254
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-12
Identities = 60/284 (21%), Positives = 87/284 (30%), Gaps = 69/284 (24%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPD 291
C + ++P S LDLS+N + S+ F L LDL I D
Sbjct: 14 CM-ELNFYKIPDNLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQT-IED 69
Query: 292 GL-QNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQGMISSVLVVFDIGEN 349
G Q+L+ L L L N I S+ + L+ L E L + +
Sbjct: 70 GAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLEN--FPIGH--- 122
Query: 350 GFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELC-RLTSLHILDLSHNNFSGTLPRC 407
L+ L L + N E LT+L LDLS N
Sbjct: 123 --------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Query: 408 INNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD 467
+ L M + L DLS N ++
Sbjct: 169 LRVLHQM-------------PLLNLSL-----------------------DLSLNPMN-F 191
Query: 468 IPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGN 510
I + L+ L L N L +P+ + + SL+ I N
Sbjct: 192 IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 9e-12
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 29/222 (13%)
Query: 120 YLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNP 179
LDLS N + F F L+ +DLSR E+ + +L +L L L+ NP
Sbjct: 32 NLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT---GNP 87
Query: 180 ISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSL 239
I L L FS GLS L+ L +L++ + L +L+ L ++ HN +
Sbjct: 88 IQS--LALGAFS---GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVA----HNLI 136
Query: 240 PELPIA----NFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVF----LDLGFNSFGGPIP 290
+ N ++L LDLS N+ + L + LDL N I
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQ 193
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLREN 331
G L+ L L +N + S+P + T L+ + L N
Sbjct: 194 PGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 52/265 (19%), Positives = 81/265 (30%), Gaps = 76/265 (28%)
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIG 347
IPD L S ++LDL N + + F L+ L L +Q I
Sbjct: 22 IPDNL--PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQ----------TIE 68
Query: 348 ENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAEL-CRLTSLHILDLSHNNFSGTLP 405
+ + L +L L L N + L+SL L N +
Sbjct: 69 DGAYQS----------LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 406 RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL- 464
I +L L L +++ N +
Sbjct: 118 FPIGHLKT--------------------LKEL--------------------NVAHNLIQ 137
Query: 465 SGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSISSL 523
S +PE +NL L+ L+LS N + I + + ++ S +L + I
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPG 195
Query: 524 TF----LSHLNLSDNNLTGKIPLGT 544
F L L L N L +P G
Sbjct: 196 AFKEIRLKELALDTNQLK-SVPDGI 219
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 44/214 (20%), Positives = 70/214 (32%), Gaps = 60/214 (28%)
Query: 354 NIPAWIGE-KLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLT 412
N+P L N + L S F L +LDLS +L+
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFS--------FPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 413 AMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEM 472
LS L L+GN + +
Sbjct: 77 --------------------HLSTL--------------------ILTGNPIQ-SLALGA 95
Query: 473 -TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGN-LLSGRIPQSISSLTFLSHL 529
+ L +LQ L LA + G +++L+ ++ + N + S ++P+ S+LT L HL
Sbjct: 96 FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 530 NLSDNNLTGKIPLG-----TQLQGFNASCFAGNN 558
+LS N + I Q+ N S N
Sbjct: 155 DLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN 187
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 89/481 (18%), Positives = 142/481 (29%), Gaps = 102/481 (21%)
Query: 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLF----NLQYLD 171
+ LD+ + + L + + + L LT + + L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 172 LSIDTHNPISFSFLYLENFSWLSGLSL----LKHLDLTGVDLSTASDWFLVT--NMLPSL 225
L N + ++ L GL ++ L L L+ A L + LP+L
Sbjct: 63 LR---SNELGDVGVHC----VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115
Query: 226 QVLKLSACSLHNS----LPELPIANFSSLYTLDLSYNEFDNT---LVPSWLFGLSHLVFL 278
Q L LS L ++ L E + L L L Y + S L L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 279 DLGFNSFGGP----IPDGLQNLT-SLEHLDLRSNNF----ISSIPTWLHKFTRLEYLSLR 329
+ N + GL++ LE L L S + + L L+L
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 330 ENRL--QGMI---------SSVLVVFDIGENGFSGNIPAWIGEKLLRN---LILRLRSNK 375
N+L GM SS L I E G + + L L L N+
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295
Query: 376 FDGQIPAELCRL-----TSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430
+ LC L L + +F+ C ++ +++
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFT---AACCSHFSSV---------------- 336
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLA-----LQSLNLSH 485
LA N L + +S N L E+ L L+ L L+
Sbjct: 337 --------------LAQNRFL---LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379
Query: 486 NFL----AGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL-----TFLSHLNLSDNNL 536
+ + + A SL +D S N L + L L L D
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
Query: 537 T 537
+
Sbjct: 440 S 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 61/351 (17%), Positives = 101/351 (28%), Gaps = 80/351 (22%)
Query: 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGS----LRHIDLSRAELTGMIPHQLGNLF-- 165
L L L L LS+N + + + + L + L L+ L ++
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168
Query: 166 --NLQYLDLS--------------IDTHNPISFSFLYLEN-----------FSWLSGLSL 198
+ + L +S +P L LE+ ++ +
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228
Query: 199 LKHLDLTGVDLSTASDWFLVTNML---PSLQVLKLSACSLHN----SLPELPIANFSSLY 251
L+ L L L L +L L+ L + C + L + A SL
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLK 287
Query: 252 TLDLSYNEFDNT----LVPSWLFGLSHLVFLDLGFNSFGG----PIPDGLQNLTSLEHLD 303
L L+ NE + L + L L L + SF L L L
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347
Query: 304 LRSNNFISSIPTWLHKF-----TRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAW 358
+ +N + L + + L L L + + ++ S
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-------------VSDSSCSS----- 389
Query: 359 IGEKLLRNLILR---LRSNKFDGQIPAELCRL-----TSLHILDLSHNNFS 401
+ LL N LR L +N +L L L L +S
Sbjct: 390 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 7e-13
Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 33/193 (17%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPD 291
CS LP +P + S LDLS+N + L W L++L L L N I
Sbjct: 25 CS-KQQLPNVPQSLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNF-ISS 81
Query: 292 G-LQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVLVVFDIGEN 349
+ +L +LDL S+N + ++ + LE L L N + + N
Sbjct: 82 EAFVPVPNLRYLDL-SSNHLHTLDEFLFSDLQALEVLLLYNNHIV----------VVDRN 130
Query: 350 GFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAE----LCRLTSLHILDLSHNNFSGTL 404
F + L L L N+ + P E +L L +LDLS N
Sbjct: 131 AFED----------MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Query: 405 PRCINNLTAMMNQ 417
+ L A +
Sbjct: 180 LTDLQKLPAWVKN 192
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 45/176 (25%), Positives = 67/176 (38%), Gaps = 23/176 (13%)
Query: 166 NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPS 224
LDLS HN +S L + L+ L L L+ L+ +S+ F +P+
Sbjct: 40 YTALLDLS---HNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF---VPVPN 89
Query: 225 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFN 283
L+ L LS+ LH +L E ++ +L L L N +V F ++ L L L N
Sbjct: 90 LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQN 146
Query: 284 SFGGPIPDG----LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335
P L L LDL S+N + +P +L L
Sbjct: 147 QISR-FPVELIKDGNKLPKLMLLDL-SSNKLKKLPL--TDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 16/161 (9%)
Query: 105 IGKINP--SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162
+ ++ + L +L L LS+N+ F+ + +LR++DLS L +
Sbjct: 51 LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-VPNLRYLDLSSNHLHTLDEFLFS 109
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNM 221
+L L+ L L +N I ++ + ++ L+ L L+ +S + N
Sbjct: 110 DLQALEVLLLY---NNHIVV----VDRNA-FEDMAQLQKLYLSQNQISRFPVELIKDGNK 161
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 262
LP L +L LS N L +LP+ + L + N
Sbjct: 162 LPKLMLLDLS----SNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 43/172 (25%), Positives = 63/172 (36%), Gaps = 17/172 (9%)
Query: 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT 176
+ LDLS+NN + + +L + LS L + + NL+YLDLS
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS--- 96
Query: 177 HNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSL 235
N + L+ F S L L+ L L + + F + LQ L LS +
Sbjct: 97 SNHLH----TLDEFL-FSDLQALEVLLLYNNHIVVVDRNAF---EDMAQLQKLYLSQNQI 148
Query: 236 HNSLPE---LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS 284
P L LDLS N+ L + L L V L ++
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 53/185 (28%)
Query: 368 ILRLRSNKFDGQIPAE--LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDK 425
+L L N ++ AE RLT+LH L LSHN+ + +
Sbjct: 43 LLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISS------------------- 81
Query: 426 EYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLS 484
+ F + L R L DLS N+L + E + ++L AL+ L L
Sbjct: 82 --EAFV-PVPNL-----RYL------------DLSSNHLH-TLDEFLFSDLQALEVLLLY 120
Query: 485 HNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIP----QSISSLTFLSHLNLSDNNLTGK 539
+N + + N M L+ + S N +S R P + + L L L+LS N L K
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-K 177
Query: 540 IPLGT 544
+PL
Sbjct: 178 LPLTD 182
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 43/232 (18%), Positives = 65/232 (28%), Gaps = 75/232 (32%)
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIP--TWLHKFTRLEYLSLRENRLQGMISSVLVVFDI 346
+P L + LDL S+N +S + + T L L L N L I
Sbjct: 33 VPQSLP--SYTALLDL-SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------FI 79
Query: 347 GENGFSGNIPAWIGEKLLRNLI-LRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNFSGTL 404
F + NL L L SN + L +L +L L +N+
Sbjct: 80 SSEAFVP----------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVD 128
Query: 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464
++ +L L LS N +
Sbjct: 129 RNAFEDMA--------------------QLQKL--------------------YLSQNQI 148
Query: 465 SGDIPEE----MTNLLALQSLNLSHNFLAGKIPENVGAMRSL--ESIDFSGN 510
S P E L L L+LS N L ++ + + + N
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 35/232 (15%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
I ++ P L + V +L + + V + +++ + + + + +
Sbjct: 9 INQVFP-DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQSLAG--MQFF 62
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPS 224
NL+ L LS HN IS + S L L+ L+ L + L L
Sbjct: 63 TNLKELHLS---HNQIS-------DLSPLKDLTKLEELSVNRNRLKN-----LNGIPSAC 107
Query: 225 LQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
L L L +N L + + + +L L + N+ + L LS L LDL N
Sbjct: 108 LSRLFLD----NNELRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGN 160
Query: 284 SFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333
I + GL L + +DL ++ + + + + R
Sbjct: 161 ----EITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 35/179 (19%)
Query: 161 LGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 220
L N +L ++ + LS +++ + ++ + +
Sbjct: 15 DPGLANAVKQNLG---KQSVT-------DLVSQKELSGVQNFNGDNSNIQSLAGM----Q 60
Query: 221 MLPSLQVLKLSACSLHNSLPEL-PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH--LVF 277
+L+ L LS HN + +L P+ + + L L ++ N N L G+ L
Sbjct: 61 FFTNLKELHLS----HNQISDLSPLKDLTKLEELSVNRNRLKN------LNGIPSACLSR 110
Query: 278 LDLGFNSFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
L L N + D L +L +LE L + NN + SI L ++LE L L N +
Sbjct: 111 LFLDNNE----LRDTDSLIHLKNLEILSI-RNNKLKSIVM-LGFLSKLEVLDLHGNEIT 163
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 42/295 (14%), Positives = 81/295 (27%), Gaps = 99/295 (33%)
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302
P ++ +L + LS + + ++ G+Q T+L+ L
Sbjct: 14 PDPGLANAVKQNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEK 362
L S+N IS + L T+LE LS+ NRL+ +
Sbjct: 69 HL-SHNQISDLSP-LKDLTKLEELSVNRNRLKNL-------------------------- 100
Query: 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSME 422
L L L +N + + ++++
Sbjct: 101 --------------------NGIPSACLSRLFLDNNE--------LRDTDSLIH------ 126
Query: 423 TDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLN 482
LK + + + N L I + L L+ L+
Sbjct: 127 ----------------------------LKNLEILSIRNNKLK-SI-VMLGFLSKLEVLD 156
Query: 483 LSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
L N + + ++ + ID +G + L + + D
Sbjct: 157 LHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 67.9 bits (165), Expect = 5e-12
Identities = 60/335 (17%), Positives = 107/335 (31%), Gaps = 25/335 (7%)
Query: 204 LTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 263
L + V+ L V ++ + + L + + +++ + N
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295
Query: 264 LVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRL 323
WL L D I G + L R + T +L
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT----DEQL 351
Query: 324 EYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAE 383
L + + S + ++ E L +IL +R+
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWC-------LLTIILLMRALDPLLYEKET 404
Query: 384 LCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGR 443
L ++L +D +++L + ENS+ + D + L+ +
Sbjct: 405 LQYFSTLKAVDPMRAA-------YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL---T 454
Query: 444 ELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503
L + L LV +DLS N L +P + L L+ L S N L + + V + L+
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQ 511
Query: 504 SIDFSGNLLSG-RIPQSISSLTFLSHLNLSDNNLT 537
+ N L Q + S L LNL N+L
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 19/154 (12%)
Query: 90 EPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLS 149
+P DD SK + + + ++ + L L++ + + L + + H+DLS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LC-HLEQLLLVTHLDLS 471
Query: 150 RAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDL 209
L +P L L L+ L S N + EN ++ L L+ L L L
Sbjct: 472 HNRLRA-LPPALAALRCLEVLQAS---DNAL-------ENVDGVANLPRLQELLLCNNRL 520
Query: 210 STASDWFLVTNMLPSLQVLKLSACSLHNSLPELP 243
++ + + P L +L L NSL +
Sbjct: 521 QQSAAIQPLVS-CPRLVLLNLQ----GNSLCQEE 549
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 50/250 (20%), Positives = 82/250 (32%), Gaps = 46/250 (18%)
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHL-DLTGVDLSTASDWFLVTNM 221
L + D+ L S L+ +L +L + W L+T +
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQ--ELEPENKWCLLTII 389
Query: 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS-------H 274
L + L + + FS+L +D + + L +L S
Sbjct: 390 LLMRALDPLL-------YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442
Query: 275 LVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
+ L L + L+ L + HLDL S+N + ++P L LE L +N L+
Sbjct: 443 VRVLHLAHKDLT--VLCHLEQLLLVTHLDL-SHNRLRALPPALAALRCLEVLQASDNALE 499
Query: 335 GMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPA--ELCRLTSLH 391
N+ G L L L L +N+ Q A L L
Sbjct: 500 -------------------NVD---GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLV 536
Query: 392 ILDLSHNNFS 401
+L+L N+
Sbjct: 537 LLNLQGNSLC 546
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 48/195 (24%), Positives = 69/195 (35%), Gaps = 26/195 (13%)
Query: 142 SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKH 201
+ LS L L L L+L ++ L+ L +L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLD---RAELT----KLQVD---GTLPVLGT 81
Query: 202 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF---SSLYTLDLSYN 258
LDL+ L + LP+L VL +S N L LP+ L L L N
Sbjct: 82 LDLSHNQLQSLPLLG---QTLPALTVLDVS----FNRLTSLPLGALRGLGELQELYLKGN 134
Query: 259 EFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTW 316
E +P L L L L N+ +P GL L +L+ L L+ N+ + +IP
Sbjct: 135 EL--KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENS-LYTIPKG 190
Query: 317 LHKFTRLEYLSLREN 331
L + L N
Sbjct: 191 FFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 45/183 (24%), Positives = 62/183 (33%), Gaps = 28/183 (15%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C +L LP L LS N T + L + L L+L DG
Sbjct: 17 CD-KRNLTALPPDLPKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352
L L LDL S+N + S+P L L + NRL
Sbjct: 75 --TLPVLGTLDL-SHNQLQSLPLLGQTLPALTVLDVSFNRLT------------------ 113
Query: 353 GNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-RLTSLHILDLSHNNFSGTLPRCI-NN 410
++P L L L+ N+ +P L L L L++NN + LP + N
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170
Query: 411 LTA 413
L
Sbjct: 171 LEN 173
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 48/183 (26%), Positives = 69/183 (37%), Gaps = 24/183 (13%)
Query: 105 IGKINPSLLD-LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
+ + + L L L+L + V + L +DLS +L +P
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGT-LPVLGTLDLSHNQLQ-SLPLLGQT 98
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
L L LD+S N ++ L L GL L+ L L G +L T + P
Sbjct: 99 LPALTVLDVS---FNRLTS----LPL-GALRGLGELQELYLKGNELKTLPPG--LLTPTP 148
Query: 224 SLQVLKLSACSLHNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
L+ L L+ +N+L ELP +L TL L N +P FG L F L
Sbjct: 149 KLEKLSLA----NNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFL 202
Query: 281 GFN 283
N
Sbjct: 203 HGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 6e-10
Identities = 47/193 (24%), Positives = 71/193 (36%), Gaps = 35/193 (18%)
Query: 219 TNMLPSLQVLKLSACSLHNSLPELPIANFSS---LYTLDLSYNEFDNTLVPSWLFGLSHL 275
++ +L LS N L +A L L+L E V L L
Sbjct: 27 PDLPKDTTILHLS----ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG---TLPVL 79
Query: 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLRENRLQ 334
LDL N +P Q L +L LD+ S N ++S+P L L+ L L+ N L+
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 335 GMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-RLTSLHIL 393
+P + + L L +N ++PA L L +L L
Sbjct: 138 -------------------TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177
Query: 394 DLSHNNFSGTLPR 406
L N+ T+P+
Sbjct: 178 LLQENSLY-TIPK 189
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-08
Identities = 51/249 (20%), Positives = 77/249 (30%), Gaps = 71/249 (28%)
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGE 348
+P L L L N + L +TRL L+L L L V
Sbjct: 25 LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----KLQVDG--- 74
Query: 349 NGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408
L L L N+ +P L +L +LD+S N + +LP
Sbjct: 75 -------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119
Query: 409 -NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD 467
L EL L L GN L
Sbjct: 120 LRGLG--------------------ELQEL--------------------YLKGNELK-T 138
Query: 468 IPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQSISSLTF 525
+P + T L+ L+L++N L ++P + + +L+++ N L IP+
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196
Query: 526 LSHLNLSDN 534
L L N
Sbjct: 197 LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 49/272 (18%), Positives = 75/272 (27%), Gaps = 69/272 (25%)
Query: 240 PELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSL 299
P ++ +S ++ T +P L L L N L T L
Sbjct: 2 PICEVSKVASHLEVNCDKRNL--TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRL 57
Query: 300 EHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWI 359
L+L ++ + L L L N+LQ S+ ++ +PA
Sbjct: 58 TQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQLQ----SLPLLGQ--------TLPALT 103
Query: 360 GEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419
+ N + L G L L L L N P +
Sbjct: 104 VLDVSFNRLTSLPLGALRG--------LGELQELYLKGNELKTLPPGLLTPTP------- 148
Query: 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEM-TNLLAL 478
+L L L+ NNL+ ++P + L L
Sbjct: 149 -------------KLEKL--------------------SLANNNLT-ELPAGLLNGLENL 174
Query: 479 QSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
+L L N L IP+ L GN
Sbjct: 175 DTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517
LS N L + L LNL L K+ + + L ++D S N L +P
Sbjct: 37 HLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQLQ-SLP 93
Query: 518 QSISSLTFLSHLNLSDNNLTGKIPLG-----TQLQ 547
+L L+ L++S N LT +PLG +LQ
Sbjct: 94 LLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSG 509
L ++ +DLS N L +P L AL L++S N L +P + L+ + G
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 510 NLLSGRIPQSI-SSLTFLSHLNLSDNNLTGKIPLG-----TQLQ 547
N L +P + + L L+L++NNLT ++P G L
Sbjct: 134 NELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 22/214 (10%)
Query: 103 KLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG 162
+ + + ++DLSN+ E + + L L+++ L L+ I + L
Sbjct: 80 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139
Query: 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTG-VDLSTASDWFLVTNM 221
NL L+LS + S L + LS S L L+L+ D + V ++
Sbjct: 140 KNSNLVRLNLSGCSG--FSEFALQ----TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193
Query: 222 LPSLQVLKLSACSLH---NSLPELPIANFSSLYTLDLSYNEF--DNTLVPSWLFGLSHLV 276
++ L LS + + L L + +L LDLS + ++ F L++L
Sbjct: 194 SETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLDLSDSVMLKNDCF--QEFFQLNYLQ 250
Query: 277 FLDLGFNSFGGPIPD----GLQNLTSLEHLDLRS 306
L L I L + +L+ L +
Sbjct: 251 HLSLSRCYD---IIPETLLELGEIPTLKTLQVFG 281
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 50/199 (25%), Positives = 77/199 (38%), Gaps = 37/199 (18%)
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLY---TLDLSYNEFDNTLVPSWLF-GLSHLVFLD 279
+ L L N L LP F L L L+ N+ +P+ +F L +L L
Sbjct: 38 DTKKLDLQ----SNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLW 91
Query: 280 LGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQGMI 337
+ N +P G+ L +L L L N + S+P + T+L YLSL N LQ
Sbjct: 92 VTDNKLQA-LPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQ--- 146
Query: 338 SSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELC-RLTSLHILDL 395
+ + F L +L LRL +N+ ++P +LT L L L
Sbjct: 147 -------SLPKGVFDK----------LTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKL 188
Query: 396 SHNNFSGTLPRCINNLTAM 414
+N ++L +
Sbjct: 189 DNNQLKRVPEGAFDSLEKL 207
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 47/195 (24%), Positives = 66/195 (33%), Gaps = 27/195 (13%)
Query: 120 YLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNP 179
LDL +N + F LR + L+ +L + L NL+ L ++ N
Sbjct: 41 KLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT---DNK 96
Query: 180 IS------FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 233
+ F L L L L L + V + L L L L
Sbjct: 97 LQALPIGVFD-----------QLVNLAELRLDRNQLKSLPPR--VFDSLTKLTYLSLGYN 143
Query: 234 SLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDG 292
L SLP+ +SL L L N+ VP F L+ L L L N
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 293 LQNLTSLEHLDLRSN 307
+L L+ L L+ N
Sbjct: 201 FDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 50/192 (26%), Positives = 75/192 (39%), Gaps = 16/192 (8%)
Query: 142 SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKH 201
+ +DL +L+ + L L+ L L+ N + L F L L+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN---DNKLQT--LPAGIFK---ELKNLET 89
Query: 202 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261
L +T L V + L +L L+L L SLP + + L L L YNE
Sbjct: 90 LWVTDNKLQALPI--GVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL- 145
Query: 262 NTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWLHK 319
+P +F L+ L L L N +P+G LT L+ L L +N
Sbjct: 146 -QSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 320 FTRLEYLSLREN 331
+L+ L L+EN
Sbjct: 204 LEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 57/286 (19%), Positives = 92/286 (32%), Gaps = 93/286 (32%)
Query: 252 TLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFIS 311
++D S + T +PS + + LDL N LT L L L ++N +
Sbjct: 20 SVDCSSKKL--TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL-NDNKLQ 74
Query: 312 SIPTWL-HKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILR 370
++P + + LE L + +N+LQ +P
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQ-------------------ALPI------------- 102
Query: 371 LRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430
FD L +L L L N PR ++LT
Sbjct: 103 ---GVFDQ--------LVNLAELRLDRNQLKSLPPRVFDSLTK----------------- 134
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLA 489
L+ L L N L +P+ + L +L+ L L +N L
Sbjct: 135 ---LTYL--------------------SLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK 170
Query: 490 GKIPENV-GAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534
++PE + L+++ N L + SL L L L +N
Sbjct: 171 -RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 55/329 (16%), Positives = 97/329 (29%), Gaps = 77/329 (23%)
Query: 111 SLLDLKHLVYLDLSNNNFENN---QIPVFLGFMGSLRHIDLSR----------AELTGMI 157
LL+ + + LS N + + L + S E ++
Sbjct: 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86
Query: 158 PHQLGNLFNLQYLDLSIDTHNPIS-FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWF 216
L L + LS N + L +F LS + L+HL L L +
Sbjct: 87 LQALLKCPKLHTVRLS---DNAFGPTAQEPLIDF--LSKHTPLEHLYLHNNGLGPQA--- 138
Query: 217 LVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH-- 274
+ +LQ L ++ + + L ++ N +N + W
Sbjct: 139 -GAKIARALQELAVNKKAKNA----------PPLRSIICGRNRLENGSMKEWAKTFQSHR 187
Query: 275 -LVFLDLGFNSFG-----GPIPDGLQNLTSLEHLDLRSNNF----ISSIPTWLHKFTRLE 324
L + + N + +GL L+ LDL+ N F S++ L + L
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247
Query: 325 YLSLRENR------------LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLR 372
L L + + + L + N I +R L +
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE--------IELDAVRTLKTVID 299
Query: 373 SNKFDGQIPAELCRLTSLHILDLSHNNFS 401
+ L L+L+ N FS
Sbjct: 300 EK------------MPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 42/316 (13%), Positives = 92/316 (29%), Gaps = 77/316 (24%)
Query: 244 IANFSSLYTLDLSYNEFDN---TLVPSWLFGLSHLVFLDLGFNSFGGP----IPDGLQNL 296
+A FS + L + V + L + + L N+ G + + + +
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIP 356
LE + S+ F + + + RL +L + L + +N F
Sbjct: 60 KDLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKC-------PKLHTVRLSDNAFGPTAQ 111
Query: 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN 416
+ + L ++ T L L L +N P+ + +
Sbjct: 112 EPLIDFLSKH---------------------TPLEHLYLHNNGLG---PQAGAKIARALQ 147
Query: 417 QENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD----IPEEM 472
+ + K L+ + N L +
Sbjct: 148 ELAVNKKAKN---------------------APPLRSI---ICGRNRLENGSMKEWAKTF 183
Query: 473 TNLLALQSLNLSHNFL-----AGKIPENVGAMRSLESIDFSGNLLSGR----IPQSISSL 523
+ L ++ + N + + E + + L+ +D N + + ++ S
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 524 TFLSHLNLSDNNLTGK 539
L L L+D L+ +
Sbjct: 244 PNLRELGLNDCLLSAR 259
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 46/264 (17%), Positives = 74/264 (28%), Gaps = 48/264 (18%)
Query: 96 DYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENN---QIPVFLGFMGSLRHIDLSRAE 152
DE + + + +LL L + LS+N F + FL L H+ L
Sbjct: 74 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH--- 130
Query: 153 LTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST- 211
N L I+ + L L+ + L
Sbjct: 131 ---------NN-------GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174
Query: 212 -ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF----SSLYTLDLSYNEFDNTLVP 266
+W L +K+ + E + L LDL N F +
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234
Query: 267 SW---LFGLSHLVFLDLGFNSFGGPIPDGLQNL---------TSLEHLDLRSNNF----I 310
+ L +L L L G + L+ L L+ N +
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291
Query: 311 SSIPTWL-HKFTRLEYLSLRENRL 333
++ T + K L +L L NR
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 27/171 (15%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPD 291
C L E+P ++ + L N ++P F L +DL N +
Sbjct: 18 CR-GKGLTEIPTNLPETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISE-LAP 73
Query: 292 GL-QNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQGMISSVLVVFDIGEN 349
Q L SL L L N I+ +P L L+ L L N++
Sbjct: 74 DAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKIN--------------- 117
Query: 350 GFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNF 400
+ + L +L L NK L ++ + L+ N F
Sbjct: 118 ----CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLF-GLSHLVF 277
L+ + LS +N + EL F SL +L L N+ T +P LF GL L
Sbjct: 55 YKKLRRIDLS----NNQISELAPDAFQGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQL 108
Query: 278 LDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPT-WLHKFTRLEYLSLREN 331
L L N + Q+L +L L L +N + +I ++ + L +N
Sbjct: 109 LLLNANKINC-LRVDAFQDLHNLNLLSL-YDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 19/139 (13%)
Query: 193 LSGLSLLKHLDLTGVDLST-ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF---S 248
S L+ +DL+ +S A D F L SL L L N + ELP + F
Sbjct: 52 FSPYKKLRRIDLSNNQISELAPDAF---QGLRSLNSLVLY----GNKITELPKSLFEGLF 104
Query: 249 SLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN 307
SL L L+ N+ + F L +L L L N L +++ + L N
Sbjct: 105 SLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Query: 308 NF-----ISSIPTWLHKFT 321
F + + +LH
Sbjct: 163 PFICDCHLKWLADYLHTNP 181
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 458 DLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRI 516
L N + P + L+ ++LS+N ++ ++ + +RSL S+ GN ++ +
Sbjct: 38 RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 517 PQSI-SSLTFLSHLNLSDNNLTGKIPLGT 544
P+S+ L L L L+ N + + +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKIN-CLRVDA 123
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 28/121 (23%)
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVLVVFDIG 347
IP L ++ + L N I IP + +L + L N++ ++
Sbjct: 26 IPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQIS----------ELA 72
Query: 348 ENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAEL-CRLTSLHILDLSHNNFSGTLP 405
+ F G LR+L L L NK ++P L L SL +L L+ N + L
Sbjct: 73 PDAFQG----------LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLR 120
Query: 406 R 406
Sbjct: 121 V 121
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-09
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLG 281
L+L+ L ++ S N+ T + F G S + + L
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLT 89
Query: 282 FNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQ 334
N + + + L SL+ L LRSN I+ + + + LSL +N++
Sbjct: 90 SNRLEN-VQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT 142
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 28/172 (16%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPD 291
CS + L ++P L L+ NEF L + +F L L ++ N I +
Sbjct: 18 CS-NQKLNKIPEHIPQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITD-IEE 74
Query: 292 G-LQNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQGMISSVLVVFDIGEN 349
G + + + + L ++N + ++ + L+ L LR NR+
Sbjct: 75 GAFEGASGVNEILL-TSNRLENVQHKMFKGLESLKTLMLRSNRIT--------------- 118
Query: 350 GFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNF 400
+ L +L L N+ + L SL L+L N F
Sbjct: 119 ----CVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 27/133 (20%)
Query: 278 LDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQG 335
L L N F G+ + L L ++ SNN I+ I + + + L NRL+
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINF-SNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 336 MISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAEL-CRLTSLHIL 393
+ + F G L +L L LRSN+ + + L+S+ +L
Sbjct: 96 VQHKM----------FKG----------LESLKTLMLRSNRI-TCVGNDSFIGLSSVRLL 134
Query: 394 DLSHNNFSGTLPR 406
L N + T+
Sbjct: 135 SLYDNQIT-TVAP 146
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 458 DLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGR 515
L+ N + + L L+ +N S+N + I E + I + N L
Sbjct: 38 RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENV 96
Query: 516 IPQSISSLTFLSHLNLSDNNLTGKIPLGT 544
+ L L L L N +T + +
Sbjct: 97 QHKMFKGLESLKTLMLRSNRIT-CVGNDS 124
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 7e-08
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 15/127 (11%)
Query: 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA--------CSLHNSLPELPIANFSSL 250
LK L++ L + ++ + LP+L+ L L ++ P F +L
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254
Query: 251 YTLDLSYNEFDNTLVPSWL--FGLSHLVFLDLGFNSFGG----PIPDGLQNLTSLEHLDL 304
L + E N +V +L L L +D+ + D + + L+ +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 305 RSNNFIS 311
N++S
Sbjct: 315 -KYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 1e-04
Identities = 28/225 (12%), Positives = 72/225 (32%), Gaps = 13/225 (5%)
Query: 318 HKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD 377
+ + + + D E S + L +L K
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182
Query: 378 GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437
+ +L L++ ++ I ++ + E F ++++
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242
Query: 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE---EMTNLLALQSLNLSHNFL----AG 490
R L ++ + + + E E L L+++++S L A
Sbjct: 243 -----RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR 297
Query: 491 KIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNN 535
+ ++V ++ L+ I+ N LS + + + + +++SD+
Sbjct: 298 LLLDHVDKIKHLKFINMKYNYLSDEMKKELQK-SLPMKIDVSDSQ 341
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 5e-04
Identities = 24/235 (10%), Positives = 67/235 (28%), Gaps = 60/235 (25%)
Query: 198 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS-LPELPIANFSSLYTLDLS 256
L L + + ++ + P+L+ L++ + L +S + ++ ++ +L L L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227
Query: 257 YNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTW 316
+ F+ +L+ L + + +
Sbjct: 228 VGV-------EDYGFDGDMNVFRPLFSK---------DRFPNLKWLGIVDAEEQNVVVEM 271
Query: 317 LHKF---TRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRS 373
+ +LE + + + + G
Sbjct: 272 FLESDILPQLETMDISAGV-------------LTDEGAR--------------------- 297
Query: 374 NKFDGQIPAELCRLTSLHILDLSHNNFSGT-LPRCINNLTAMMNQENSMETDKEY 427
+ + ++ L +++ +N S +L ++ +S E D +Y
Sbjct: 298 -----LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDY 347
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 4e-07
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 23/114 (20%)
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTW-LHKFTRLEYLSLRENRLQGMISSVLVVFDIG 347
L +L L + + + + L L L++ ++ L+ +
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR----------FVA 72
Query: 348 ENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNF 400
+ F L L L N + + + + SL L LS N
Sbjct: 73 PDAFHF----------TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 4e-07
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 234 SLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGL 293
+SL LP +L L + + L L GL L L + + PD
Sbjct: 19 GALDSLHHLP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 294 QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
L L+L S N + S+ + L+ L L N L
Sbjct: 77 HFTPRLSRLNL-SFNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 3e-06
Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 18/158 (11%)
Query: 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLL 512
+RC + + D + L L + + + + L ++ + L
Sbjct: 13 LRCT----RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 513 SGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPL---PKNCT 569
P + LS LNLS N L + T G +L L P +C+
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT---------VQGLSLQELVLSGNPLHCS 118
Query: 570 DQNVPIPAENENGSEDEDEMGYWLYVSTAFGFVVGFWC 607
+ E G E + + C
Sbjct: 119 CALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASC 156
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 108 INPSLLDLKHLVYLDLSNNN----FENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
L ++L L + N E L +G LR++ + ++ L + P
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHF 78
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTG 206
L L+LS N + L + LS L+ L L+G
Sbjct: 79 TPRLSRLNLS---FNAL--ESLSWKTVQGLS----LQELVLSG 112
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 246
L++ L G L L + + + L L+ L + L +
Sbjct: 21 LDSLHHLPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGL-RFVAPDAFHF 78
Query: 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF 285
L L+LS+N +L + GLS L L L N
Sbjct: 79 TPRLSRLNLSFNAL-ESLSWKTVQGLS-LQELVLSGNPL 115
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 47/186 (25%)
Query: 364 LRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423
+ L + + A L L + L LS NN I++L
Sbjct: 25 AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-----KISSL------------ 66
Query: 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNL 483
+ ++ +R + L N + I L+ L +
Sbjct: 67 -------------------------SGMENLRILSLGRNLIK-KIENLDAVADTLEELWI 100
Query: 484 SHNFLAGKIPENVGAMRSLESIDFSGNLLSG-RIPQSISSLTFLSHLNLSDNNLTGKIPL 542
S+N +A + + + +L + S N ++ +++L L L L+ N L
Sbjct: 101 SYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158
Query: 543 GTQLQG 548
Sbjct: 159 NNATSE 164
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 33/164 (20%), Positives = 49/164 (29%), Gaps = 35/164 (21%)
Query: 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP--DGLQNLTSLEHLDLRSNNFI 310
L + + + L L L L N+ I L + +L L L N I
Sbjct: 30 LHGMIPPIEK--MDATLSTLKACKHLALSTNN----IEKISSLSGMENLRILSL-GRNLI 82
Query: 311 SSIPTWLHKFTRLEYLSLRENR------LQGMISSVLVVFDIGENGFSGNIPAWIGEKLL 364
I LE L + N+ ++ +++ L V + N I W L
Sbjct: 83 KKIENLDAVADTLEELWISYNQIASLSGIEKLVN--LRVLYMSNN----KITNWGEIDKL 136
Query: 365 RNL----ILRLRSNKFDGQIPAE----------LCRLTSLHILD 394
L L L N + RL +L LD
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 224 SLQVLKLSACSLHNSLPEL-----PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278
S+ + LH +P + ++ + L LS N + S L G+ +L L
Sbjct: 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---SSLSGMENLRIL 75
Query: 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
LG N I + +LE L + S N I+S+ + K L L + N++
Sbjct: 76 SLGRNLIKK-IENLDAVADTLEELWI-SYNQIASLSG-IEKLVNLRVLYMSNNKIT 128
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 27/126 (21%)
Query: 275 LVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
V L + L L + +HL L S N I I + L L LSL N ++
Sbjct: 27 KVELHGMIPPIEK-MDATLSTLKACKHLAL-STNNIEKISS-LSGMENLRILSLGRNLIK 83
Query: 335 GMISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHIL 393
+ EN + + L L + N+ + + + +L +L +L
Sbjct: 84 KI-----------EN----------LDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVL 120
Query: 394 DLSHNN 399
+S+N
Sbjct: 121 YMSNNK 126
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 35/194 (18%)
Query: 99 DETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIP 158
D + + + + V L E + L + + +H+ LS + +
Sbjct: 9 DAIRIFEERKSVVATEAE-KVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIEKISS 65
Query: 159 HQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLV 218
L + NL+ L L N I +EN ++ L+ L ++ +++ S
Sbjct: 66 --LSGMENLRILSLG---RNLIK----KIENLDAVAD--TLEELWISYNQIASLSGI--- 111
Query: 219 TNMLPSLQVLKLSACSLHNSLPEL----PIANFSSLYTLDLSYNEFDNTLVPSW------ 268
L +L+VL +S +N + +A L L L+ N N +
Sbjct: 112 -EKLVNLRVLYMS----NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166
Query: 269 ---LFGLSHLVFLD 279
+ L +L LD
Sbjct: 167 IEVVKRLPNLKKLD 180
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 9e-07
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
GKI + +L +L L N + L + L+ ++LS + G + L
Sbjct: 38 DGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPKLKKLELSENRIFGGLDMLAEKL 94
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD-WFLVTNMLP 223
NL +L+LS N + + L L LK LDL +++ +D V +LP
Sbjct: 95 PNLTHLNLS---GNKLK----DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147
Query: 224 SLQVL 228
L L
Sbjct: 148 QLTYL 152
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
Query: 205 TGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 264
+G+D+ L +++ L L C ++ E A F +L L L +
Sbjct: 6 SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV- 64
Query: 265 VPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTW--LHKFTR 322
S L L L L+L N G + + L +L HL+L S N + I T L K
Sbjct: 65 --SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL-SGNKLKDISTLEPLKKLEC 121
Query: 323 LEYLSLREN 331
L+ L L
Sbjct: 122 LKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 241 ELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLE 300
EL +++ L L + ++ + +L FL L L L L+
Sbjct: 17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLK 74
Query: 301 HLDLRSNNFISSIPTWLH-KFTRLEYLSLRENRLQ 334
L+L S N I L K L +L+L N+L+
Sbjct: 75 KLEL-SENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 436 ILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPEN 495
I + ++ R A L L D +N G I + L+ L+L + L + N
Sbjct: 14 IHLELRNRTPAAVRELVL----DNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SV-SN 66
Query: 496 VGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
+ + L+ ++ S N + G + L L+HLNLS N L
Sbjct: 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDF 507
+ + L L + + L L+ L LS N + G + + +L ++
Sbjct: 45 TAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102
Query: 508 SGNLLSG-RIPQSISSLTFLSHLNLSDNNLT 537
SGN L + + L L L+L + +T
Sbjct: 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 9e-07
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 29/149 (19%)
Query: 101 TSKLIGKINPSLLDLKHLVYLDLSNN------------------NFENNQIPVFLGF--M 140
T++LI + + LDL +F +N+I GF +
Sbjct: 5 TAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
Query: 141 GSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLK 200
L+ + ++ + + L +L L L+ +N + L + L+ L L
Sbjct: 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILT---NNSLV----ELGDLDPLASLKSLT 116
Query: 201 HLDLTGVDLSTASD-WFLVTNMLPSLQVL 228
+L + ++ V +P ++VL
Sbjct: 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVL 145
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
R +DL G + I L +++ S N + K+ + +R L+++ + N
Sbjct: 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLT 537
+ +L L+ L L++N+L
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 24/112 (21%)
Query: 291 DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350
N LDLR I I + + + +N ++ +
Sbjct: 13 AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-------------- 57
Query: 351 FSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFS 401
P LLR L L + +N+ L L L L++N+
Sbjct: 58 --DGFP------LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP--DGLQNLTSLEHLD 303
N LDL + ++ + L +D N I DG L L+ L
Sbjct: 17 NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNE----IRKLDGFPLLRRLKTLL 70
Query: 304 LRSNNFISSIPTWL-HKFTRLEYLSLRENRLQ 334
+ +NN I I L L L L N L
Sbjct: 71 V-NNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 25/153 (16%)
Query: 160 QLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVT 219
Q N + LDL I +EN + L +D + ++ +
Sbjct: 14 QYTNAVRDRELDLR---GYKIP----VIENLG--ATLDQFDAIDFSDNEIRKLDGF---- 60
Query: 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD 279
+L L+ L ++ + + E L L L+ N L L L +L
Sbjct: 61 PLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Query: 280 LGFNSFGGPIPDG-------LQNLTSLEHLDLR 305
+ N P+ + + + + LD +
Sbjct: 120 ILRN----PVTNKKHYRLYVIYKVPQVRVLDFQ 148
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDF 507
L +D S N + + + L L++L +++N + A+ L +
Sbjct: 38 GATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95
Query: 508 SGNLLSG-RIPQSISSLTFLSHLNLSDNNLT 537
+ N L ++SL L++L + N +T
Sbjct: 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNL 164
GK+ + + L +L N I L + L+ ++LS ++G +
Sbjct: 31 EGKLEGLTDEFEELEFLSTINVGLT--SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKC 87
Query: 165 FNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD-WFLVTNMLP 223
NL +L+LS N I L L L LK LDL +++ +D V +LP
Sbjct: 88 PNLTHLNLS---GNKIK----DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140
Query: 224 SLQVL 228
L L
Sbjct: 141 QLTYL 145
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 454 VRCMDLSGN-NLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512
V+ + L + + G + L+ L+ + L I N+ + L+ ++ S N +
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRV 76
Query: 513 SGRIPQSISSLTFLSHLNLSDNNLT 537
SG + L+HLNLS N +
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 241 ELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD--GLQNLTS 298
EL S + L L + + + L FL + L L
Sbjct: 10 ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNK 65
Query: 299 LEHLDLRSNNFISSIPTWLH-KFTRLEYLSLRENRLQ 334
L+ L+L S+N +S L K L +L+L N+++
Sbjct: 66 LKKLEL-SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG 490
+ L +G+ + + + L+ I + L L+ L LS N ++G
Sbjct: 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78
Query: 491 KIPENVGAMRSLESIDFSGNLLSG-RIPQSISSLTFLSHLNLSDNNLT 537
+ +L ++ SGN + + + L L L+L + +T
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 60/436 (13%), Positives = 130/436 (29%), Gaps = 58/436 (13%)
Query: 115 LKHLVYLDLSN-NNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLF----NLQY 169
K+ L LS+ F + + +L+ +DL +++ + H L + +L
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188
Query: 170 LDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
L++S + +SFS L ++ LK L L + P L+ L
Sbjct: 189 LNIS-CLASEVSFSAL----ERLVTRCPNLKSLKLNR--AVPLEKLATLLQRAPQLEELG 241
Query: 230 LSACSLHN-----SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS 284
+ S + ++ L L ++ L P+ S L L+L + +
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL-PAVYSVCSRLTTLNLSYAT 300
Query: 285 FGGP-IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVV 343
+ L L+ L + + + L L + + M +V +
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360
Query: 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403
+ G S P L +++ R + + ++ L
Sbjct: 361 -EQGLVSVSMGCP------KLESVLYFCRQMT-NAALITIARNRPNMTRFRLCIIEPKAP 412
Query: 404 LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN 463
+ L + + K +R + LSG
Sbjct: 413 DYLTLEPLDIGF---------------------------GAIVEH--CKDLRRLSLSGLL 443
Query: 464 LSGDIPEEMTNLLALQSLNLSHNFLAGK-IPENVGAMRSLESIDFSG-NLLSGRIPQSIS 521
T ++ L+++ + + + SL ++ + + S
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503
Query: 522 SLTFLSHLNLSDNNLT 537
L + L +S +++
Sbjct: 504 KLETMRSLWMSSCSVS 519
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 38/310 (12%), Positives = 80/310 (25%), Gaps = 62/310 (20%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLS---RAELTGMIPHQLGNLF-- 165
S +++ + N + +R ++L ++P G
Sbjct: 36 SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYP 95
Query: 166 ----------NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDW 215
L+ + L + K L L+ + +
Sbjct: 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELI-------AKSFKNFKVLVLSSCEGFSTDGL 148
Query: 216 FLVTNMLPSLQVLKLSACSLHN----SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271
+ +L+ L L + + L P ++SL +L++S + +
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFP-DTYTSLVSLNISCLASEVSFS-----A 202
Query: 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331
L LV +L+ L L + + T L + +LE L
Sbjct: 203 LERLV-----------------TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG-- 243
Query: 332 RLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLH 391
+ + + L + +PA + L
Sbjct: 244 -----------GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLT 292
Query: 392 ILDLSHNNFS 401
L+LS+
Sbjct: 293 TLNLSYATVQ 302
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 40/171 (23%)
Query: 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFIS 311
LDL TL + GL+ L +L+L +N + G+ +LT L L L +N ++
Sbjct: 40 LDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQ-LA 96
Query: 312 SIPTWL-HKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILR 370
S+P + T+L+ L L N+L+ +P+ + ++L + LR
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKS-------------------LPSGVFDRLTKLKELR 137
Query: 371 LRSNK--------FDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTA 413
L +N+ FD +LT+L L LS N + L
Sbjct: 138 LNTNQLQSIPAGAFD--------KLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 237 NSLPELPIANFSSLY---TLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDG 292
L L A F L L+L YN+ + + +F L+ L L L N +P G
Sbjct: 45 TGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLAS-LPLG 101
Query: 293 L-QNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQ 334
+ +LT L+ L L N + S+P+ + + T+L+ L L N+LQ
Sbjct: 102 VFDHLTQLDKLYL-GGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSS---LY 251
GL+ L L+L L T S V + L L L L+ +N L LP+ F L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLA----NNQLASLPLGVFDHLTQLD 110
Query: 252 TLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNF 309
L L N+ +PS +F L+ L L L N IP G LT+L+ L L +N
Sbjct: 111 KLYLGGNQL--KSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQL 167
Query: 310 ISSIPTWLHKFTRLEYLSLREN 331
S + +L+ ++L N
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGN 189
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 48/318 (15%), Positives = 96/318 (30%), Gaps = 74/318 (23%)
Query: 116 KHLVYLDLSNNNFENNQI----PVFLGFMGSLRHIDLSRAELTGMIPHQLGNLF-----N 166
+ LDLS NN + F S+ ++LS L +L + N
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 167 LQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFL---VTNMLP 223
+ L+LS N +S+ + + + LDL D S+ S +N+
Sbjct: 82 VTSLNLS---GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138
Query: 224 SLQVLKLSACSLHN----SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL----SHL 275
S+ L L L L ++ A +++ +L+L N + L + +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198
Query: 276 VFLDLGFNSFGGPIPDGLQNL--------TSLEHLDLRSNNF----ISSIPTWLHKFTRL 323
LDL N G L + L+L N + ++ L
Sbjct: 199 TSLDLSANLLG---LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255
Query: 324 EYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAE 383
+ + L + ++ + ++ + L + +
Sbjct: 256 QTVYLDYDIVKN-----------------------MSKEQCKALGAAFPNIQ-------- 284
Query: 384 LCRLTSLHILDLSHNNFS 401
+ ++D +
Sbjct: 285 -----KIILVDKNGKEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 64/384 (16%), Positives = 108/384 (28%), Gaps = 87/384 (22%)
Query: 193 LSGLSLLKHLDLTGVDLSTASDWFLVT---NMLPSLQVLKLSACSLHN----SLPELPIA 245
S + LDL+ +L + S L+ N S+ L LS SL L ++ A
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 246 NFSSLYTLDLSYNEFDNT----LVPSWLFGLSHLVFLDLGFNSFGG----PIPDGLQNL- 296
+++ +L+LS N LV + + LDLG+N F NL
Sbjct: 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137
Query: 297 TSLEHLDLRSNNF----ISSIPTWLHKF-TRLEYLSLRENRLQ-----------GMISSV 340
S+ L+LR N+ + L + L+LR N L I +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197
Query: 341 LVVFDIGENGFSGNIPAWIGEKLLRN----LILRLRSNKFDGQIPAELCRL----TSLHI 392
+ D+ N A + + L L N G L L L
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257
Query: 393 LDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLK 452
+ L ++ L G +
Sbjct: 258 VYLDYDIVKNMSKEQCKAL------------------------------GAAFPNIQKII 287
Query: 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512
L +D +G + ++NL+ S L + ++
Sbjct: 288 L---VDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNI--------- 335
Query: 513 SGRIPQSISSLTFLSHLNLSDNNL 536
+ ++ L + L
Sbjct: 336 -----EDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 54/357 (15%), Positives = 100/357 (28%), Gaps = 86/357 (24%)
Query: 244 IANFSSLYTLDLSYNEFDNTLVPSWLFGLSH----LVFLDLGFNSFGGPIPDGLQNL--- 296
+ + +LDLS N + + ++ + L+L NS G L
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQI 74
Query: 297 -----TSLEHLDLRSNNF----ISSIPTWL-HKFTRLEYLSLRENRLQGM---------- 336
++ L+L N + L + L L N
Sbjct: 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134
Query: 337 -ISSVLVVFDIGENGFSGNIPAWIGEKLLRN----LILRLRSNKFDGQIPAELCRL---- 387
+ + + ++ N + + L L LR N + AEL +
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194
Query: 388 -TSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA 446
S+ LDLS N + L + + +
Sbjct: 195 PASVTSLDLSANLLG---LKSYAELAYIFSSIPN-------------------------- 225
Query: 447 YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLA----LQSLNLSHNFLAGKIPENVGA---- 498
V ++L N L G E + L LQ++ L ++ + E A
Sbjct: 226 ------HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279
Query: 499 ---MRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNAS 552
++ + +D +G + IS+L +L + + Q N
Sbjct: 280 FPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIE 336
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 7e-06
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 253 LDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFI 310
L L+ NE + LF L HLV L+L N G I + + ++ L L N I
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENK-I 90
Query: 311 SSIPTWL-HKFTRLEYLSLRENRLQ 334
I + +L+ L+L +N++
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQIS 115
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 8e-06
Identities = 45/437 (10%), Positives = 116/437 (26%), Gaps = 78/437 (17%)
Query: 111 SLLDLKHLVYLDLSN-NNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLF---- 165
+ L L L + F + + + ++ + + + + L L
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192
Query: 166 NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 225
+L+ L+ + IS L + L + + ++ +F +L
Sbjct: 193 SLEVLNFYMTEFAKISPKDL----ETIARNCRSLVSVKVGDFEILELVGFFK---AAANL 245
Query: 226 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF 285
+ + + +PE + L + +P + + LDL +
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305
Query: 286 GGP-IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVF 344
+Q +LE L+ R+ + +L+ L + +
Sbjct: 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ--------- 356
Query: 345 DIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTL 404
+ + ++ L L A+ C+ L + + ++
Sbjct: 357 ------GMEDEEGLVSQRGLIAL--------------AQGCQ--ELEYMAVYVSDI---- 390
Query: 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464
T++ ++ L L + ++ L R ++ L
Sbjct: 391 ------------------TNESLESIGTYLKNLCDFR--------LVLLDREERITDLPL 424
Query: 465 SGDIPEEMTNLLALQSLNLSHN--FLAGKIPENVGAM-RSLESIDFSGNLLSGR-IPQSI 520
+ + L+ L +G ++ + S + +
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484
Query: 521 SSLTFLSHLNLSDNNLT 537
L L + +
Sbjct: 485 RGCPNLQKLEMRGCCFS 501
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 43/259 (16%), Positives = 79/259 (30%), Gaps = 32/259 (12%)
Query: 166 NLQYLDLSIDTHNPISFSFLYLENFSWL---------SGLSLLKHLDLTGVDLSTASDWF 216
NL+ L L + L EN+ + L LK + + +S
Sbjct: 74 NLRSLKLKGKPR--AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131
Query: 217 LVTNMLPSLQVLKLSACSL--HNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF---- 270
L L+ LKL CS + L + + + + TL + + F WL
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSI-VTHCRKIKTLLMEESSFS-EKDGKWLHELAQ 189
Query: 271 GLSHLVFLDLGFNSFGGPIPDGL----QNLTSLEHLDLRSNNFIS--SIPTWLHKFTRLE 324
+ L L+ F P L +N SL + + +
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFC 249
Query: 325 YLSLRENRLQG-MISSVLVVFDIGENGFSGNIPAWIGE-----KLLRNLILRLRSNKFDG 378
SL E+ +++ + G S P + +R L L + +
Sbjct: 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309
Query: 379 QIPAELCRLTSLHILDLSH 397
+ + +L +L+ +
Sbjct: 310 HCTL-IQKCPNLEVLETRN 327
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 40/325 (12%), Positives = 86/325 (26%), Gaps = 42/325 (12%)
Query: 96 DYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT- 154
+ ++ K + ++ L+ L + + SL + + E+
Sbjct: 175 SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234
Query: 155 -GMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTAS 213
NL L+ D P + L + L G+ +
Sbjct: 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYM-----------NLVFPRKLCRLGLSYMGPN 283
Query: 214 DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273
+ ++ ++ L L L I +L L+ D L
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE-VLAQYCK 342
Query: 274 HLVFLDLGFNSFGGPIPDGLQNLT------------SLEHLDLRSNNF----ISSIPTWL 317
L L + + + D ++ LE++ + ++ + SI T+L
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402
Query: 318 HKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD 377
+ L + V + K LR LR
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIG-----------CKKLRRFAFYLRQGGLT 451
Query: 378 GQIPAELCRL-TSLHILDLSHNNFS 401
+ + + ++ + L + S
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGES 476
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-05
Identities = 31/235 (13%), Positives = 72/235 (30%), Gaps = 17/235 (7%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS- 173
+ LDL E + +L ++ + L+ L +
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351
Query: 174 --IDTHNPISFSFLYLENFSWLS-GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
+ + L+ G L+++ + D++ S + T L +L +L
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY-LKNLCDFRL 410
Query: 231 SACSLHNSLPELP--------IANFSSLYTLDLSYN--EFDNTLVPSWLFGLSHLVFLDL 280
+ +LP + L + + ++ ++ L
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470
Query: 281 GFNSFGGP-IPDGLQNLTSLEHLDLRSNNFI-SSIPTWLHKFTRLEYLSLRENRL 333
G+ + + + +L+ L++R F +I + K L YL ++ R
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 57/195 (29%)
Query: 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE------FDNTLVPSWLFGLS 273
N L S+ + + + S+ I ++ L L N+ L+
Sbjct: 38 NELNSIDQIIANNSDI-KSVQ--GIQYLPNVRYLALGGNKLHDISALK---------ELT 85
Query: 274 HLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLREN 331
+L +L L N +P+G+ LT+L+ L L N + S+P + K T L YL+L N
Sbjct: 86 NLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN 143
Query: 332 RLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNK--------FDGQIPAE 383
+LQ ++P + +KL L L N+ FD
Sbjct: 144 QLQ-------------------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD------ 178
Query: 384 LCRLTSLHILDLSHN 398
+LT L L L N
Sbjct: 179 --KLTQLKDLRLYQN 191
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 43/172 (25%)
Query: 237 NSLPELPIAN-FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG-PIPDGLQ 294
S+ + N +S+ + + ++ V + L ++ +L LG N L
Sbjct: 29 KSVTDAVTQNELNSIDQIIANNSDI--KSVQG-IQYLPNVRYLALGGNKLHDISALKEL- 84
Query: 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGN 354
T+L +L L N S K T L+ L L EN+LQ +
Sbjct: 85 --TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------------------S 123
Query: 355 IPAWIGEKLLRNLILRLRSNK--------FDGQIPAELCRLTSLHILDLSHN 398
+P + +KL L L N+ FD +LT+L LDLS+N
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD--------KLTNLTELDLSYN 167
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 222 LPSLQVLKLSACSLHNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLF-GLSHLVF 277
L +L L L+ N L LP F ++L L L N+ +P +F L++L +
Sbjct: 84 LTNLTYLILT----GNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTY 137
Query: 278 LDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQ 334
L+L N +P G+ LT+L LDL N S+P + K T+L+ L L +N+L+
Sbjct: 138 LNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLK 194
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 7e-05
Identities = 67/561 (11%), Positives = 158/561 (28%), Gaps = 142/561 (25%)
Query: 86 LHDDEPFWLEDYD-----DETSKLIGK-------INPSLLDLKHLVYLDLSNNNFENNQI 133
L E +++++D D ++ K ++ + ++ L + +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMV 79
Query: 134 PVFLG---------FMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSF 184
F+ M ++ + +T M Q L+N D + +S
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN----DNQVFAKYNVSRLQ 135
Query: 185 LYLENFSWLSGLSLLKHLDLTGVD--------LSTASDWFLVTNMLPSLQV--LKLSACS 234
YL+ L L K++ + GV L + + M ++ L L C+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM--DFKIFWLNLKNCN 193
Query: 235 LHNSLPELPIANFSSLYTLDLSYNEFDNTLVP------SWLFGLSHLVFLDLGFNSFGGP 288
++ E + LY +D ++ + S L L+ N
Sbjct: 194 SPETVLE-MLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--L 248
Query: 289 IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGE 348
+ +QN + +L ++ TR + ++ + L ++ + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLT---------TRFKQVT---DFLSAATTTHISLDHH-S 295
Query: 349 NGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHI---------------- 392
+ +++L+L+ + +P E+ +
Sbjct: 296 MTLT--------PDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 393 -LDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTML 451
++ + + + +N L E K +D LS+ + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVL-------EPAEYRKMFD----RLSVF--PPSAHIPTILLS 393
Query: 452 KLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNF----------------------LA 489
+ ++ + N L SL L
Sbjct: 394 LI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 490 GKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQL-QG 548
I ++ ++ +S D L + + H +L + ++ L +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYF------YSHIGH-HLKNIEHPERMTLFRMVFLD 499
Query: 549 FNASCFAGNNLCGAPLPKNCT 569
F F + N +
Sbjct: 500 FR---FLEQKIRHDSTAWNAS 517
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 38/286 (13%), Positives = 72/286 (25%), Gaps = 125/286 (43%)
Query: 10 LELLAL-ANIKIG-----YCNGS----AYIGCIQSERKALLRFKQDLKDPANRLASWSDG 59
LL + + + + I +R D +W
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-------ESIR------DGLATWDNWKHV 350
Query: 60 NCCTWAGVVCNDSTGRVLELRLGN--PFLH-----------DDEP--------FWLEDYD 98
NC D ++E L P + W +
Sbjct: 351 NC---------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 99 DETSKLIGK-INPSLLDLK--------HLVYLDLSNN-------------------NFEN 130
+ ++ K SL++ + +YL+L F++
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 131 NQIPV------FLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSF 184
+ + F +G H L E + LF + +LD
Sbjct: 462 DDLIPPYLDQYFYSHIG--HH--LKNIEHPERM-----TLFRMVFLD------------- 499
Query: 185 LYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 230
F +L ++H ++ W ++L +LQ LK
Sbjct: 500 -----FRFLE--QKIRH---------DSTAWNASGSILNTLQQLKF 529
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 226 QVLKLSACSLHNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLG 281
Q+L L N + +L F +L L L N+ +P +F L+ L LDLG
Sbjct: 43 QILYLH----DNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLG 96
Query: 282 FNSFGGPIPDGL-QNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
N +P + L L+ L + N + +P + + T L +L+L +N+L+
Sbjct: 97 TNQLTV-LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK 148
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 38/125 (30%)
Query: 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIP 356
T+ + L L N P L+ L L N+L + VFD
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG---VFD----------- 85
Query: 357 AWIGEKLLRNL-ILRLRSNK--------FDGQIPAELCRLTSLHILDLSHNNFSGTLPRC 407
L L +L L +N+ FD RL L L + N + LPR
Sbjct: 86 ------SLTQLTVLDLGTNQLTVLPSAVFD--------RLVHLKELFMCCNKLT-ELPRG 130
Query: 408 INNLT 412
I LT
Sbjct: 131 IERLT 135
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 236 HNSLPELPIANF---SSLYTLDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPD 291
NSL LP F +SL L L N+ +P+ +F L+ L +L+L N +P+
Sbjct: 37 TNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQS-LPN 93
Query: 292 GL-QNLTSLEHLDLRSNNFISSIPTWL-HKFTRLEYLSLRENRLQ 334
G+ LT L+ L L + N + S+P + K T+L+ L L +N+L+
Sbjct: 94 GVFDKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 19/152 (12%)
Query: 199 LKHLDLTGVDLSTASDWFLVTNML----PSLQVLKLSACSL-HNSLPELPIANFSSLYTL 253
L+ L+L GV ++ +V +L +L + L++C L L L + F L
Sbjct: 74 LRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKL 131
Query: 254 DLSYNEFDNT----LVPSWLFGLSHLVFLDLGFNSFGGP----IPDGLQNLTSLEHLDLR 305
L N L L + L L N + +GL TS+ HL L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 306 SNNF----ISSIPTWLHKFTRLEYLSLRENRL 333
+ + L + +L+ L++ N
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 48/282 (17%), Positives = 84/282 (29%), Gaps = 50/282 (17%)
Query: 166 NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL 225
+L+ L+L+ P+ + + SG L ++L L A L+ +
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVA---AVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRA 128
Query: 226 QVLKLSACSLHNS----LPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH---LVFL 278
+ L L SL L +L + + + TL LS N V + GL+ + L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188
Query: 279 DLGFNSFGGP----IPDGLQNLTSLEHLDLRSNNF----ISSIPTWLHKFTRLEYLSLRE 330
L G + L L+ L++ N ++ + LE L L
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248
Query: 331 NR------------LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRN------------ 366
N VV + E + I ++ RN
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH 308
Query: 367 ---LILRLRSNKFDGQIPAELCRL----TSLHILDLSHNNFS 401
L+ L ++ P +L + L +
Sbjct: 309 LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 253 LDLSYNEFDNTLVPSWLF-GLSHLVFLDLGFNSFGGPIPDGL-QNLTSLEHLDLRSNNFI 310
L+L N+ +P +F L+ L L L N +PDG+ LT L L L N +
Sbjct: 33 LELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYL-HENKL 88
Query: 311 SSIPTWL-HKFTRLEYLSLRENRLQ 334
S+P + K T+L+ L+L N+L+
Sbjct: 89 QSLPNGVFDKLTQLKELALDTNQLK 113
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 202 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSS---LYTLDLSYN 258
L L G + + L ++ LS +N + L +FS+ L TL LSYN
Sbjct: 36 LYLDGNQFTLVPKEL---SNYKHLTLIDLS----NNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 259 EFDNTLVPSWLF-GLSHLVFLDLGFN---SFGGPIPDGL-QNLTSLEHLDLRSN 307
+P F GL L L L N +P+G +L++L HL + +N
Sbjct: 89 RL--RCIPPRTFDGLKSLRLLSLHGNDISV----VPEGAFNDLSALSHLAIGAN 136
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 636 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.84 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.81 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.75 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.73 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.71 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.7 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.69 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.67 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.67 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.58 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.53 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.52 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.52 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.5 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.48 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.46 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.45 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.45 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.42 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.38 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.37 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.33 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.29 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.29 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.25 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.19 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.17 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.95 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.89 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.81 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.68 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.44 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.44 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.42 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.42 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.34 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.27 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.82 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.7 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.57 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.88 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.65 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.31 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-69 Score=618.34 Aligned_cols=535 Identities=30% Similarity=0.395 Sum_probs=354.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCcccccEEeCCCCCcEEEEEcCCCCCCCC---CC--------------
Q 006657 30 GCIQSERKALLRFKQDLKDPANRLASWS-DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDD---EP-------------- 91 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~~~~l~~W~-~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~---~~-------------- 91 (636)
.+.++|++||++||+++.||. .+++|+ +.|||.|+||+|+ +|||++|+|++..+.+. .+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 346789999999999999888 899997 7899999999998 58999999999887664 11
Q ss_pred ---------------ccccccCCCCCcceeecCc--cccCCCCCCEEeCCCCCCCCCCCchhh-cCCCCCCEEEccCCcc
Q 006657 92 ---------------FWLEDYDDETSKLIGKINP--SLLDLKHLVYLDLSNNNFENNQIPVFL-GFMGSLRHIDLSRAEL 153 (636)
Q Consensus 92 ---------------~~l~~~~~~~~~l~g~i~~--~l~~l~~L~~L~Ls~n~l~~~~ip~~l-~~l~~L~~L~L~~n~l 153 (636)
..++.+++++|.+.|.+|. .++++++|++|++++|.+.+. +|..+ .++++|++|++++|++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCC
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCcc
Confidence 2456778888999998888 888888888888888877654 44332 3444444444444444
Q ss_pred CCCCCcc-------------------------CcCCCCCCeEeccCCCCCCcccccc---------------cccccccc
Q 006657 154 TGMIPHQ-------------------------LGNLFNLQYLDLSIDTHNPISFSFL---------------YLENFSWL 193 (636)
Q Consensus 154 ~~~~p~~-------------------------l~~l~~L~~L~Ls~n~~~~~~~~~~---------------~~~~l~~l 193 (636)
++..|.. +.++++|++|++++|.+........ .......+
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH
Confidence 3332221 1344455555555554433211000 00001124
Q ss_pred cCCCCCcEEEccCCCCCCCCC--------------------hhhhhCC-CCCCCEEEeecCCCCCCCCCccccCCCCCcE
Q 006657 194 SGLSLLKHLDLTGVDLSTASD--------------------WFLVTNM-LPSLQVLKLSACSLHNSLPELPIANFSSLYT 252 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~--------------------~~~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 252 (636)
.++++|++|++++|.+++... .+..+.. +++|++|++++|.+++.+| ..++++++|++
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~ 322 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLES 322 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCccE
Confidence 445555555555554442210 0112222 2556666666666555555 45666666666
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccC---------------------------CCCCCEEEcc
Q 006657 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQN---------------------------LTSLEHLDLR 305 (636)
Q Consensus 253 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------l~~L~~L~L~ 305 (636)
|++++|.++|.+|...+.++++|++|++++|++++.+|..+.+ +++|++|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 6666666666666444666666666666666666555554433 4456666666
Q ss_pred CCcCCcccchhhhCCCCCCEEEccCcccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc
Q 006657 306 SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ 379 (636)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~ 379 (636)
+|++++.+|..+.++++|++|++++|++++.+|. .|+.|++++|.+.|.+|..+.. +++|++|++++|++++.
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGE 481 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCc
Confidence 6666666777777777788888877777766554 4455555555555555544443 44455555555555444
Q ss_pred CccccCCCCCCCEEEccC------------------------ccCccccchhhhhhhhhccccC-----CCccccccccc
Q 006657 380 IPAELCRLTSLHILDLSH------------------------NNFSGTLPRCINNLTAMMNQEN-----SMETDKEYDTF 430 (636)
Q Consensus 380 ~p~~l~~l~~L~~L~Ls~------------------------N~l~~~~p~~l~~l~~L~~~~~-----~~~~~~~~~~~ 430 (636)
+|..+..+++|++|++++ |+++|.+|..+.++++|+.++. .+.+|......
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 444444444444444444 4444444444444444444332 12223221110
Q ss_pred e------eec-------------------------------------------eEEEEeeccccccccccccccEEECcC
Q 006657 431 T------IEL-------------------------------------------SILVVMKGRELAYNTMLKLVRCMDLSG 461 (636)
Q Consensus 431 ~------~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 461 (636)
. ... .....++|..+...+.++.|++|||++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 0 000 000223455555666788999999999
Q ss_pred CccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCC
Q 006657 462 NNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 462 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 541 (636)
|+++|.+|..++++++|++|+|++|+++|.+|..++.+++|++|||++|+++|.+|..+..+++|++||+++|+++|.||
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCccccccCCC-CCCCCCCCCCCCCC
Q 006657 542 LGTQLQGFNASCFAGN-NLCGAPLPKNCTDQ 571 (636)
Q Consensus 542 ~~~~~~~~~~~~~~~n-~lc~~~~~~~c~~~ 571 (636)
.+++++++...+|.|| +|||.|+. .|...
T Consensus 722 ~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 722 EMGQFETFPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp SSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence 9999999999999999 99999987 89733
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=478.54 Aligned_cols=427 Identities=19% Similarity=0.251 Sum_probs=304.2
Q ss_pred CCCHHHHHHHHHHhhcCCCCC--------CCCCCCC-CCCCccc---ccEEeCCCCCcEEEEEcCCCCCCCCCCcccccc
Q 006657 30 GCIQSERKALLRFKQDLKDPA--------NRLASWS-DGNCCTW---AGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDY 97 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~~--------~~l~~W~-~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~ 97 (636)
+....|+.||.++++++.++. ...++|+ +.+||.| .||+|+.. |||++|+|+++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~------------- 91 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGF------------- 91 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTS-------------
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCc-------------
Confidence 344679999999999985442 2345898 7899999 99999864 89999999987
Q ss_pred CCCCCcceeecCccccCCCCCCEEeCCCCCC------CC-----------------------------------------
Q 006657 98 DDETSKLIGKINPSLLDLKHLVYLDLSNNNF------EN----------------------------------------- 130 (636)
Q Consensus 98 ~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l------~~----------------------------------------- 130 (636)
++.|.+|++++++++|++|+|++|.+ .+
T Consensus 92 -----~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 92 -----GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp -----CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred -----ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence 88999999999999999999999954 11
Q ss_pred -----------------------------CCCchhhcCCCCCCEEEccCCccCCC-----------------CCccCc--
Q 006657 131 -----------------------------NQIPVFLGFMGSLRHIDLSRAELTGM-----------------IPHQLG-- 162 (636)
Q Consensus 131 -----------------------------~~ip~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~-- 162 (636)
..+|..++++++|++|++++|++++. +|..++
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~ 246 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhc
Confidence 01566677777777777777777764 777777
Q ss_pred CCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCC-CCC-CCChhhhhCC------CCCCCEEEeecCC
Q 006657 163 NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD-LST-ASDWFLVTNM------LPSLQVLKLSACS 234 (636)
Q Consensus 163 ~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~~------l~~L~~L~L~~n~ 234 (636)
++++|++|++++|.+.+. +| ..+.++++|++|++++|. +++ . ++..++. +++|++|++++|+
T Consensus 247 ~l~~L~~L~L~~n~l~~~-~p-------~~l~~l~~L~~L~Ls~n~~l~~~~--lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTK-LP-------TFLKALPEMQLINVACNRGISGEQ--LKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp GCTTCCEEEEECCTTCSS-CC-------TTTTTCSSCCEEECTTCTTSCHHH--HHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCCCCEEEecCCcCCcc-Ch-------HHHhcCCCCCEEECcCCCCCcccc--chHHHHhhhccccCCCCCEEECCCCc
Confidence 777777777777765442 11 226677777777777776 665 2 1223333 3777777777777
Q ss_pred CCCCCCCc--cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCC-CCEEEccCCcCCc
Q 006657 235 LHNSLPEL--PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTS-LEHLDLRSNNFIS 311 (636)
Q Consensus 235 l~~~~p~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~ 311 (636)
++ .+| . .++++++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+.++++ |++|++++|+++
T Consensus 317 l~-~ip-~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 317 LK-TFP-VETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp CS-SCC-CHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CC-ccC-chhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 77 666 4 57777777777777777776666 5667777777777777777 66777777777 777777777777
Q ss_pred ccchhhhCCC--CCCEEEccCcccccccCc-------------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 312 SIPTWLHKFT--RLEYLSLRENRLQGMISS-------------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 312 ~~p~~l~~l~--~L~~L~L~~n~l~~~~p~-------------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
.+|..+...+ +|++|++++|++++.+|. .|+.|++++|.++ .+|..++..+++|++|++++|++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC
Confidence 5666665543 677777777777765442 5667777777777 66666665567777777777777
Q ss_pred cccCccccCCC--------CCCCEEEccCccCccccchhhh--hhhhhccccCCCccccccccceeeceEEEEeeccccc
Q 006657 377 DGQIPAELCRL--------TSLHILDLSHNNFSGTLPRCIN--NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA 446 (636)
Q Consensus 377 ~~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (636)
+ .+|...... ++|++|++++|+++ .+|..+. .++
T Consensus 470 ~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~---------------------------------- 513 (636)
T 4eco_A 470 T-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP---------------------------------- 513 (636)
T ss_dssp S-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT----------------------------------
T ss_pred C-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC----------------------------------
Confidence 7 555443321 26777777777777 5665443 333
Q ss_pred cccccccccEEECcCCccCccCCcccccccCCCeEeC------CCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 447 YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNL------SHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 447 ~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L------s~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
+|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..++.+++|++|+|++|++ +.+|..+
T Consensus 514 ------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 514 ------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp ------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred ------CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 36777888888776 7777777788888877 45667777777777777888888888877 4677665
Q ss_pred cCCCCCCeeeccCCcCcc
Q 006657 521 SSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 521 ~~l~~L~~L~ls~N~l~g 538 (636)
. ++|++|++++|++.+
T Consensus 586 ~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 586 T--PNISVLDIKDNPNIS 601 (636)
T ss_dssp C--TTCCEEECCSCTTCE
T ss_pred h--CcCCEEECcCCCCcc
Confidence 4 677788888887764
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=477.85 Aligned_cols=426 Identities=19% Similarity=0.250 Sum_probs=356.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCCCCCCC-C-----CCC--ccc------------ccEEeCCCCCcEEEEEcCCCCCC
Q 006657 28 YIGCIQSERKALLRFKQDLKDPANRLASWS-D-----GNC--CTW------------AGVVCNDSTGRVLELRLGNPFLH 87 (636)
Q Consensus 28 ~~~~~~~~~~~Ll~~k~~~~~~~~~l~~W~-~-----~~~--c~w------------~gv~C~~~~~~v~~L~L~~~~l~ 87 (636)
..++..+|+.||++||+++.+| +|+ + .+| |.| .||+|+. .+||++|+|+++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--- 333 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--- 333 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence 3455678999999999999776 786 2 256 999 9999986 689999999987
Q ss_pred CCCCccccccCCCCCcceeecCccccCCCCCCEEeC-CCCCCCCC-----------------------------------
Q 006657 88 DDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDL-SNNNFENN----------------------------------- 131 (636)
Q Consensus 88 ~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~L-s~n~l~~~----------------------------------- 131 (636)
++.|.+|+++++|++|++|+| ++|.++|.
T Consensus 334 ---------------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 334 ---------------GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp ---------------CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred ---------------CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 899999999999999999999 77743221
Q ss_pred ----------------------------------------CCchhhcCCCCCCEEEccCCccCC----------------
Q 006657 132 ----------------------------------------QIPVFLGFMGSLRHIDLSRAELTG---------------- 155 (636)
Q Consensus 132 ----------------------------------------~ip~~l~~l~~L~~L~L~~n~l~~---------------- 155 (636)
.+|..++++++|++|+|++|++++
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 078889999999999999999998
Q ss_pred -CCCccCc--CCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCC-CCC--CCChhh----hhCCCCCC
Q 006657 156 -MIPHQLG--NLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD-LST--ASDWFL----VTNMLPSL 225 (636)
Q Consensus 156 -~~p~~l~--~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-l~~--~~~~~~----~~~~l~~L 225 (636)
.+|..++ ++++|++|++++|.+.+. +| ..+.++++|++|++++|. +++ .|.... .+..+++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP-------~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQ-LP-------DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCS-CC-------GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCcc-Ch-------HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 3899988 999999999999976542 12 237889999999999998 876 332111 23456799
Q ss_pred CEEEeecCCCCCCCCCc--cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCC-CCEE
Q 006657 226 QVLKLSACSLHNSLPEL--PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTS-LEHL 302 (636)
Q Consensus 226 ~~L~L~~n~l~~~~p~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L 302 (636)
++|++++|+++ .+| . .+.++++|+.|++++|.++ .+| .++.+++|++|++++|+++ .+|..+.++++ |++|
T Consensus 551 ~~L~Ls~N~L~-~ip-~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFP-ASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CEEECCSSCCC-BCC-CHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred cEEEeeCCcCC-ccC-ChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence 99999999998 888 5 7899999999999999998 776 7889999999999999998 88888999998 9999
Q ss_pred EccCCcCCcccchhhhCCCC--CCEEEccCcccccccCc-----------cceEEEccCCCCccccchHHHHhhhcCceE
Q 006657 303 DLRSNNFISSIPTWLHKFTR--LEYLSLRENRLQGMISS-----------VLVVFDIGENGFSGNIPAWIGEKLLRNLIL 369 (636)
Q Consensus 303 ~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~-----------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L 369 (636)
++++|+++ .+|..+..++. |++|++++|++.+.+|. .|+.|++++|.+. .+|..++..+++|+.|
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI 702 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence 99999988 77877776654 99999999999887652 6889999999998 7888887668999999
Q ss_pred ecCCCcCcccCccccCCC--------CCCCEEEccCccCccccchhhh--hhhhhccccCCCccccccccceeeceEEEE
Q 006657 370 RLRSNKFDGQIPAELCRL--------TSLHILDLSHNNFSGTLPRCIN--NLTAMMNQENSMETDKEYDTFTIELSILVV 439 (636)
Q Consensus 370 ~L~~n~l~~~~p~~l~~l--------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (636)
+|++|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .++
T Consensus 703 ~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~--------------------------- 753 (876)
T 4ecn_A 703 ILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP--------------------------- 753 (876)
T ss_dssp ECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT---------------------------
T ss_pred ECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC---------------------------
Confidence 99999998 667655443 28999999999998 7777654 443
Q ss_pred eeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCC------ccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 440 MKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSH------NFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 440 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~------N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
+|+.|+|++|++++ +|..++++++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++
T Consensus 754 -------------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 754 -------------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -------------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -------------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 38899999999997 898999999999999976 788889999999999999999999999
Q ss_pred ccCchhccCCCCCCeeeccCCcCccc
Q 006657 514 GRIPQSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
+.+|..+. ++|+.||+++|++...
T Consensus 819 ~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 819 RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CccCHhhc--CCCCEEECCCCCCCcc
Confidence 68888765 6899999999998753
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=461.72 Aligned_cols=458 Identities=30% Similarity=0.383 Sum_probs=352.8
Q ss_pred CcEEEEEcCCCCCCCCCC-----ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEc
Q 006657 74 GRVLELRLGNPFLHDDEP-----FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDL 148 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~-----~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L 148 (636)
.+++.|+++++.+.+..+ ..++.+++++|.+.+.+|..+.++++|++|++++|.+.+. +|.. .+++|++|++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~--~l~~L~~L~L 276 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-IPPL--PLKSLQYLSL 276 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEES-CCCC--CCTTCCEEEC
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCc-cCcc--ccCCCCEEEC
Confidence 468889999988877655 3567788888888888888888888888888888888764 5543 6777777777
Q ss_pred cCCccCCCCCccCcCC-CCCCeEeccCCCCCCccccccc-----------cc----cc--ccccCCCCCcEEEccCCCCC
Q 006657 149 SRAELTGMIPHQLGNL-FNLQYLDLSIDTHNPISFSFLY-----------LE----NF--SWLSGLSLLKHLDLTGVDLS 210 (636)
Q Consensus 149 ~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~~~~~~~~~~~-----------~~----~l--~~l~~l~~L~~L~Ls~n~l~ 210 (636)
++|.+++.+|..+... ++|++|++++|.+.+.....+. .. .+ ..+.++++|++|++++|.++
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 7777777777776654 7777777777765432111100 00 00 11445555555555555554
Q ss_pred CC-CChhhhhCCCC-CCCEEEeecCCCCCCCCCccccC--CCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCc
Q 006657 211 TA-SDWFLVTNMLP-SLQVLKLSACSLHNSLPELPIAN--FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 211 ~~-~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
+. |. .+..++ +|++|++++|.+++.+| ..+.. +++|++|++++|.+++.+| ..+.++++|++|++++|+++
T Consensus 357 ~~~p~---~l~~l~~~L~~L~Ls~N~l~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 357 GELPE---SLTNLSASLLTLDLSSNNFSGPIL-PNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp ECCCT---THHHHTTTCSEEECCSSEEEEECC-TTTTCSTTCCCCEEECCSSEEEEECC-GGGGGCTTCCEEECCSSEEE
T ss_pred ccccH---HHHhhhcCCcEEEccCCCcCCCcC-hhhhhcccCCccEEECCCCccccccC-HHHhcCCCCCEEECcCCccc
Confidence 22 22 233333 56666666666665555 33443 6778888888888887777 88899999999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc------cceEEEccCCCCccccchHHH
Q 006657 287 GPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIG 360 (636)
Q Consensus 287 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~ 360 (636)
+.+|..++++++|++|++++|++++.+|..+..+++|++|++++|++++.+|. .|+.|++++|.++|.+|.+++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 99999999999999999999999999999999999999999999999988875 789999999999999999998
Q ss_pred HhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC--------------------
Q 006657 361 EKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS-------------------- 420 (636)
Q Consensus 361 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~-------------------- 420 (636)
. +++|++|++++|+++|.+|..++.+++|++|++++|+++|.+|..+.....+......
T Consensus 512 ~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 512 R-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp G-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred c-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 6 9999999999999999999999999999999999999999999988776544332110
Q ss_pred -------------------------------CccccccccceeeceEE---EEeeccccccccccccccEEECcCCccCc
Q 006657 421 -------------------------------METDKEYDTFTIELSIL---VVMKGRELAYNTMLKLVRCMDLSGNNLSG 466 (636)
Q Consensus 421 -------------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g 466 (636)
+.++..+........+. ..+.|.++..++.++.|+.|+|++|+++|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 00111111111111111 24567888899999999999999999999
Q ss_pred cCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCC
Q 006657 467 DIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 467 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 541 (636)
.+|..++++++|++|||++|+++|.+|..++.+++|++||+++|+++|.+|.. ..+..+....+.+|+--|-.|
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCC
Confidence 99999999999999999999999999999999999999999999999999975 455667777888998555334
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=427.99 Aligned_cols=470 Identities=18% Similarity=0.145 Sum_probs=323.5
Q ss_pred cccEEeCCC---------CCcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCC
Q 006657 64 WAGVVCNDS---------TGRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNF 128 (636)
Q Consensus 64 w~gv~C~~~---------~~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l 128 (636)
+..|.|... ...++.|+|+++.+.+..+ ..++.+++++|.+.+..|.++.++++|++|++++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 345778532 2368889999888876543 3567888888888888888888899999999999988
Q ss_pred CCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCC
Q 006657 129 ENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD 208 (636)
Q Consensus 129 ~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~ 208 (636)
++. .|..++.+++|++|++++|.+++..|..++++++|++|++++|.+...+.+. +.++++|++|++++|.
T Consensus 94 ~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 94 IFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--------GFPTEKLKVLDFQNNA 164 (606)
T ss_dssp SEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--------TCCCTTCCEEECCSSC
T ss_pred ccc-ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc--------ccCCcccCEEEcccCc
Confidence 865 6778888899999999999888766777888889999999988887654442 4457888888888888
Q ss_pred CCCCCChhhhhCCCCCCC--EEEeecCCCCCCCCCccccCC---------------------------------------
Q 006657 209 LSTASDWFLVTNMLPSLQ--VLKLSACSLHNSLPELPIANF--------------------------------------- 247 (636)
Q Consensus 209 l~~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p~~~~~~l--------------------------------------- 247 (636)
+++.+ +..+..+++|+ +|++++|.+++..| ..+...
T Consensus 165 l~~~~--~~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 165 IHYLS--KEDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp CCEEC--HHHHHTTTTCCSEEEECTTCCCCEECT-TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred ccccC--hhhhhhhcccceeEEecCCCccCccCh-hHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence 77653 22456677777 77777777765444 222110
Q ss_pred ------------CCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccch
Q 006657 248 ------------SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPT 315 (636)
Q Consensus 248 ------------~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 315 (636)
.+|+.|++++|.++ .+++..|..+++|++|++++|+++ .+|..+.++++|++|++++|++++..|.
T Consensus 242 ~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 242 DISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred ccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh
Confidence 15677777778776 455467888888888888888887 6777788888888888888888877777
Q ss_pred hhhCCCCCCEEEccCcccccccCc-------cceEEEccCCCCcccc--chHHHHhhhcCceEecCCCcCcccCccccCC
Q 006657 316 WLHKFTRLEYLSLRENRLQGMISS-------VLVVFDIGENGFSGNI--PAWIGEKLLRNLILRLRSNKFDGQIPAELCR 386 (636)
Q Consensus 316 ~l~~l~~L~~L~L~~n~l~~~~p~-------~L~~L~l~~n~l~g~i--p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 386 (636)
.+..+++|++|++++|.+.+.+|. .|+.|++++|.+.+.. |..+.. +++|++|++++|.+.+..|..+..
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN-LSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT-CTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc-CCCCCEEECCCCcCCcCCHHHhcC
Confidence 788888888888888877765543 6778888888877554 445543 778888888888887777777778
Q ss_pred CCCCCEEEccCccCccccchh-hhhhhhhccccCCCc-----cccccccceeeceEEE---Eeec---cccccccccccc
Q 006657 387 LTSLHILDLSHNNFSGTLPRC-INNLTAMMNQENSME-----TDKEYDTFTIELSILV---VMKG---RELAYNTMLKLV 454 (636)
Q Consensus 387 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~L 454 (636)
+++|++|++++|++++..|.. +.++++|+.++.... .+...........+.. .+.+ ........+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 888888888888877665543 666666666543211 1111111000000000 0111 111234456667
Q ss_pred cEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 455 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
++|++++|++++..|..++++++|++|+|++|++++..|..+..+++| +|++++|++++..|..+..+++|+++++++|
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 777777777776666666777777777777777776666667777777 7777777777666666666667777777777
Q ss_pred cCcccCCCCCccCCc
Q 006657 535 NLTGKIPLGTQLQGF 549 (636)
Q Consensus 535 ~l~g~ip~~~~~~~~ 549 (636)
++.|.++..+...|+
T Consensus 558 ~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 558 PLDCTCSNIYFLEWY 572 (606)
T ss_dssp CEECSGGGHHHHHHH
T ss_pred CccccCCcHHHHHHH
Confidence 777666654443333
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=418.20 Aligned_cols=472 Identities=18% Similarity=0.144 Sum_probs=370.4
Q ss_pred EEEcCCCCCC---CCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccC
Q 006657 78 ELRLGNPFLH---DDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT 154 (636)
Q Consensus 78 ~L~L~~~~l~---~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~ 154 (636)
.++.++..+. ...|..++.+++++|.+.+..|.++.++++|++|+|++|.+++. .|..|+++++|++|++++|+++
T Consensus 16 ~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCS
T ss_pred eEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCccc
Confidence 4666665443 44557789999999999998899999999999999999999875 7889999999999999999999
Q ss_pred CCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCC
Q 006657 155 GMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 234 (636)
Q Consensus 155 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 234 (636)
+..|..++++++|++|++++|.+...+.. .+.++++|++|++++|.+++.+. + .+..+++|++|++++|.
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~--------~~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFI--------PLHNQKTLESLYLGSNHISSIKL-P-KGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGS--------CCTTCTTCCEEECCSSCCCCCCC-C-TTCCCTTCCEEECCSSC
T ss_pred ccChhhhcccccccEeeccccCcccCCcc--------hhccCCcccEEECCCCcccccCc-c-cccCCcccCEEEcccCc
Confidence 88999999999999999999998775322 27899999999999999998621 1 34459999999999999
Q ss_pred CCCCCCCccccCCCCCc--EEEcccCCCCCCCChhhhcCC----------------------------------------
Q 006657 235 LHNSLPELPIANFSSLY--TLDLSYNEFDNTLVPSWLFGL---------------------------------------- 272 (636)
Q Consensus 235 l~~~~p~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~l~~l---------------------------------------- 272 (636)
+++..| ..++.+++|+ .|++++|.+++..+ ..+...
T Consensus 165 l~~~~~-~~~~~l~~L~~l~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 165 IHYLSK-EDMSSLQQATNLSLNLNGNDIAGIEP-GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp CCEECH-HHHHTTTTCCSEEEECTTCCCCEECT-TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred ccccCh-hhhhhhcccceeEEecCCCccCccCh-hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 986555 6788999999 89999999985433 443221
Q ss_pred -----------CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc--
Q 006657 273 -----------SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS-- 339 (636)
Q Consensus 273 -----------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-- 339 (636)
.+|++|++++|.+++..+..++.+++|++|++++|+++ .+|..+..+++|++|++++|++++..|.
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh
Confidence 16888999999999888888999999999999999998 7888899999999999999999987653
Q ss_pred ----cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccC--ccccCCCCCCCEEEccCccCccccchhhhhhhh
Q 006657 340 ----VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQI--PAELCRLTSLHILDLSHNNFSGTLPRCINNLTA 413 (636)
Q Consensus 340 ----~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 413 (636)
.|+.|++++|.+.+.+|......+++|++|++++|.+++.. |..+..+++|++|++++|++++..|..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 79999999999999888764445999999999999999766 778999999999999999999998999999998
Q ss_pred hccccCCCc-----cccc-cccceeeceEE---EEeeccccccccccccccEEECcCCccCcc---CCcccccccCCCeE
Q 006657 414 MMNQENSME-----TDKE-YDTFTIELSIL---VVMKGRELAYNTMLKLVRCMDLSGNNLSGD---IPEEMTNLLALQSL 481 (636)
Q Consensus 414 L~~~~~~~~-----~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~---~p~~~~~l~~L~~L 481 (636)
|+.++.... .+.. .........+. ..+.+..+...+.+++|++|++++|++++. .+..+..+++|++|
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 887764221 1111 11111111111 122333445556677888888888888762 23567788888888
Q ss_pred eCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC-CccCCccccccCCCCCC
Q 006657 482 NLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG-TQLQGFNASCFAGNNLC 560 (636)
Q Consensus 482 ~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~lc 560 (636)
++++|++++..|..|+.+++|++|++++|++++..|..+..++.| +|++++|++++..|.. ..+..+.... +.
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~-----l~ 555 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN-----LR 555 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE-----CT
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe-----CC
Confidence 888888887778888888888888888888888888888888888 8888888888655542 1222333333 34
Q ss_pred CCCCCCCCC
Q 006657 561 GAPLPKNCT 569 (636)
Q Consensus 561 ~~~~~~~c~ 569 (636)
++|+.+.|.
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCccccCC
Confidence 455555564
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-47 Score=438.28 Aligned_cols=481 Identities=20% Similarity=0.175 Sum_probs=302.0
Q ss_pred cccccEEeCCCCCcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeec-CccccCCCCCCEEeCCCCCCCCCCCc
Q 006657 62 CTWAGVVCNDSTGRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKI-NPSLLDLKHLVYLDLSNNNFENNQIP 134 (636)
Q Consensus 62 c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i-~~~l~~l~~L~~L~Ls~n~l~~~~ip 134 (636)
|.|..|.+ ...+++.|+|+++.+.+..+ ..++.+++++|...+.+ |.++.++++|++|+|++|.+++. .|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p 90 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HP 90 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CH
Confidence 45666666 34679999999998876543 45788889999888888 66789999999999999999865 68
Q ss_pred hhhcCCCCCCEEEccCCccCCCCCcc--CcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCC
Q 006657 135 VFLGFMGSLRHIDLSRAELTGMIPHQ--LGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTA 212 (636)
Q Consensus 135 ~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~ 212 (636)
..|+++++|++|++++|.+++.+|.. ++++++|++|++++|.+.....+ ..+.++++|++|++++|.+++.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-------~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH-------PSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC-------GGGGTCSSCCEEEEESSCCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc-------hhHhhCCCCCEEECCCCcCCee
Confidence 89999999999999999999877765 88999999999999988765332 2378899999999999988776
Q ss_pred CChhhhhCCC--CCCCEEEeecCCCCCCCCCccccCCCC------CcEEEcccCCCCCCCChhhhc--------------
Q 006657 213 SDWFLVTNML--PSLQVLKLSACSLHNSLPELPIANFSS------LYTLDLSYNEFDNTLVPSWLF-------------- 270 (636)
Q Consensus 213 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~~l~~------L~~L~Ls~n~l~~~~~~~~l~-------------- 270 (636)
... .+..+ ++|+.|++++|.+.+..| ..+..+++ |+.|++++|.+++.++ ..+.
T Consensus 164 ~~~--~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 164 CEH--ELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDIT-GNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CSG--GGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTT-SGGGGTSCSCCBSEEECC
T ss_pred CHH--HcccccCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCchhHH-HHHHhhcCcccccceecc
Confidence 211 22222 566666666666666555 33444333 6666666665554333 1111
Q ss_pred ----------------------C--CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 271 ----------------------G--LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 271 ----------------------~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+ .++|++|++++|.+.+..|..+..+++|++|++++|++++..|..|..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 1 1456666666666665555666666666666666666665556666666666666
Q ss_pred EccCcccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc------------------Ccc
Q 006657 327 SLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ------------------IPA 382 (636)
Q Consensus 327 ~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~------------------~p~ 382 (636)
++++|++++..|. .|+.|++++|.+.+..+..+. .+++|+.|++++|.+++. +|.
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~ 398 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK-FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC-SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc-CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc
Confidence 6666666554432 456666666666533333333 255666666666655531 111
Q ss_pred ccCCCCCCCEEEccCccCcccc-chhhhhhhhhccccCCCc----cccc-----cccceeeceEEEEe-----ecccccc
Q 006657 383 ELCRLTSLHILDLSHNNFSGTL-PRCINNLTAMMNQENSME----TDKE-----YDTFTIELSILVVM-----KGRELAY 447 (636)
Q Consensus 383 ~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~~~~~~~----~~~~-----~~~~~~~~~~~~~~-----~~~~~~~ 447 (636)
. ..+++.|++++|++++.- +..+.++++|+.++.... .+.. ...+....-....+ .+..+..
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 1 122333333344333211 112233444443321100 0000 00000000000000 1122233
Q ss_pred ccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCC
Q 006657 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527 (636)
Q Consensus 448 ~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 527 (636)
...+++|+.|+|++|++++..|..+.++++|++|+|++|++++..|..+. ++|+.|||++|++++.+|..+ .+|+
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~ 550 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLS 550 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCC
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcC
Confidence 45667788888888888887788888888888888888888876666555 788888888888888877665 4678
Q ss_pred eeeccCCcCcccCCCCCccCCccccccCCC-CCCCCCCCCCCC
Q 006657 528 HLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPLPKNCT 569 (636)
Q Consensus 528 ~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~~~~c~ 569 (636)
++++++|++.|.|+..+...++. ..+ .+||.+....|.
T Consensus 551 ~l~l~~Np~~C~c~~~~f~~~~~----~~~~~~~~~~~~~~C~ 589 (844)
T 3j0a_A 551 VLDITHNKFICECELSTFINWLN----HTNVTIAGPPADIYCV 589 (844)
T ss_dssp EEEEEEECCCCSSSCCSHHHHHH----HTTTTTCCCGGGCCCS
T ss_pred EEEecCCCcccccccHHHHHHHH----hcCcccccccccCccC
Confidence 88888888888887655444332 233 556666555665
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-45 Score=413.69 Aligned_cols=453 Identities=20% Similarity=0.156 Sum_probs=243.8
Q ss_pred CcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCch-hhcCCCCCCEE
Q 006657 74 GRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPV-FLGFMGSLRHI 146 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~-~l~~l~~L~~L 146 (636)
.+++.|+|+++.+.+..+ ..++.+++++|.+.+..|.++.++++|++|++++|.++. +|. .|+++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence 468899999988877654 346778888888888888888888888888888888884 454 68888888888
Q ss_pred EccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCC-
Q 006657 147 DLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL- 225 (636)
Q Consensus 147 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L- 225 (636)
++++|++++..|..|+++++|++|++++|.+...+... +.++++|++|++++|.+++.+........+++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT--------QVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS--------SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchh--------hcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 88888888777778888888888888888776543221 344555555555555544442211111122334
Q ss_pred --------------------------------------------------CEEEeecCCCCCCCCCccccCCCC--CcEE
Q 006657 226 --------------------------------------------------QVLKLSACSLHNSLPELPIANFSS--LYTL 253 (636)
Q Consensus 226 --------------------------------------------------~~L~L~~n~l~~~~p~~~~~~l~~--L~~L 253 (636)
+.|++++|.+++..| ..+.+++. |++|
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN-TTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT-TTTGGGGGSCCCEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh-hHhhccCcCCCCEE
Confidence 444444444433333 23444433 6666
Q ss_pred EcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCC---------------------------------CC
Q 006657 254 DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTS---------------------------------LE 300 (636)
Q Consensus 254 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---------------------------------L~ 300 (636)
++++|.+++.. +.++..+++|++|++++|.+++..|..+.++++ |+
T Consensus 254 ~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 254 DLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp ECTTSCCCEEC-TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred ECCCCCcCccC-cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 66666666333 356666667777777776666555544444444 44
Q ss_pred EEEccCCcCCcccchhhhCCCCCCEEEccCccccccc-C---------ccceEEEccCCCCccccchHHHHhhhcCceEe
Q 006657 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI-S---------SVLVVFDIGENGFSGNIPAWIGEKLLRNLILR 370 (636)
Q Consensus 301 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p---------~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~ 370 (636)
+|++++|.+++..|..|.++++|++|++++|.+.+.. + ..++.+++++|.+++..|..+.. +++|+.|+
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 411 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-LGHLEVLD 411 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT-CTTCCEEE
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC-CCCCCEEe
Confidence 4444444444444444444555555555544432110 0 14555555555555444444432 55555666
Q ss_pred cCCCcCcccCc-cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCC-------ccccccccceeeceEE---EE
Q 006657 371 LRSNKFDGQIP-AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM-------ETDKEYDTFTIELSIL---VV 439 (636)
Q Consensus 371 L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~-------~~~~~~~~~~~~~~~~---~~ 439 (636)
+++|.+++.+| ..+..+++|++|++++|++++..+..+..++.|+.+.... ..+...........+. ..
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 66665555444 3455555555555555555554455555444444433211 1111111100000000 01
Q ss_pred eeccccccccccccccEEECcCCccCccCC--------cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 440 MKGRELAYNTMLKLVRCMDLSGNNLSGDIP--------EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 440 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p--------~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
+.+..+.....+++|++|++++|++++..+ ..+.++++|++|+|++|+++...+..|..+++|+.|++++|+
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 111122223344445555555555543211 124445555555555555552222335555555555555555
Q ss_pred CCccCchhccCCCCCCeeeccCCcCccc
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
+++..+..|..+++|++|++++|++++.
T Consensus 572 l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 572 LNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence 5544444445555555555555555543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=405.78 Aligned_cols=440 Identities=20% Similarity=0.123 Sum_probs=348.3
Q ss_pred CcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEE
Q 006657 74 GRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHID 147 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~ 147 (636)
.+++.|+|+++.+.+..+ ..++.+++++|.+.+..|.++.++++|++|+|++|.+++. .|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEE
Confidence 468999999998876544 3578889999999988888999999999999999999865 688899999999999
Q ss_pred ccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCC-hhhhh-------
Q 006657 148 LSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD-WFLVT------- 219 (636)
Q Consensus 148 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~------- 219 (636)
+++|.+++..|..++++++|++|++++|.+....+| ..+.++++|++|++++|.+++.+. ....+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-------AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-------GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceech-------HhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 999999977778899999999999999988764433 237788888888888888776521 11111
Q ss_pred -----------------CCCCCCCEEEeecCCCC----------------------------------------------
Q 006657 220 -----------------NMLPSLQVLKLSACSLH---------------------------------------------- 236 (636)
Q Consensus 220 -----------------~~l~~L~~L~L~~n~l~---------------------------------------------- 236 (636)
....+|++|++++|.+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 11225667777666543
Q ss_pred ------------CCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEc
Q 006657 237 ------------NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304 (636)
Q Consensus 237 ------------~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 304 (636)
+.+| .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+| .+ .+++|++|++
T Consensus 264 ~~l~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIV--KFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp EEEEECCCTTCCGGGG--SCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred hheecccccccccccc--ccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence 1122 1455678888888888885 454 678889999999999999 5778 45 8899999999
Q ss_pred cCCcCCcccchhhhCCCCCCEEEccCccccccc--C------ccceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI--S------SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 305 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p------~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
++|+..+.. .+..+++|++|++++|++++.. | ..|+.|++++|.+.+ +|..+.. +++|+.|++++|++
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~-l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMG-LEELQHLDFQHSTL 411 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTT-CTTCCEEECTTSEE
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccC-CCCCCeeECCCCcc
Confidence 999665544 5678899999999999888662 2 378899999998874 6655554 88999999999999
Q ss_pred cccCc-cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec-cccccccccccc
Q 006657 377 DGQIP-AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG-RELAYNTMLKLV 454 (636)
Q Consensus 377 ~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L 454 (636)
.+..| ..+..+++|++|++++|++++..|..+.++++|+.++.... .+.+ ..+...+.+++|
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------------~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN----------------SFKDNTLSNVFANTTNL 475 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC----------------EEGGGEECSCCTTCTTC
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC----------------cCCCcchHHhhccCCCC
Confidence 88777 67888999999999999999888888888888766543111 1122 134445667889
Q ss_pred cEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCC-CCCeeeccC
Q 006657 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT-FLSHLNLSD 533 (636)
Q Consensus 455 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~ 533 (636)
++|++++|++++..|..++++++|++|++++|++++.+|..+..+++|++|++++|+++ .+|..+..++ +|++|++++
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCS
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccC
Confidence 99999999999888999999999999999999999888999999999999999999998 6777788886 599999999
Q ss_pred CcCcccCCCCCccCCcc
Q 006657 534 NNLTGKIPLGTQLQGFN 550 (636)
Q Consensus 534 N~l~g~ip~~~~~~~~~ 550 (636)
|++.|.++..+..+++.
T Consensus 555 N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 555 NSVACICEHQKFLQWVK 571 (606)
T ss_dssp CCCCCSSTTHHHHTTTT
T ss_pred CCcccCCccHHHHHHHH
Confidence 99999998766666654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=399.49 Aligned_cols=465 Identities=20% Similarity=0.173 Sum_probs=292.5
Q ss_pred CcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEE
Q 006657 74 GRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHID 147 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~ 147 (636)
.+++.|+|+++.+.+..+ ..++.+++++|.+.+..+.+++++++|++|++++|.+++. .|..++++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc-ChhHccccCCCCEEE
Confidence 468888998888877655 3577888888888765555788899999999999988754 557788889999999
Q ss_pred ccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccc---cc------------------c----------------
Q 006657 148 LSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYL---EN------------------F---------------- 190 (636)
Q Consensus 148 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~---~~------------------l---------------- 190 (636)
+++|.+++..|..++++++|++|++++|.+...+...+.. .. +
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 9999888888888888888888888888776543211000 00 0
Q ss_pred --------------------------------ccccCC--CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCC
Q 006657 191 --------------------------------SWLSGL--SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236 (636)
Q Consensus 191 --------------------------------~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 236 (636)
.++.++ ++|++|++++|.+++.+. ..+..+++|++|++++|.+.
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSCCBS
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc--ccccCcccccEeeCCCCccC
Confidence 001111 124444444444443321 13445555666666655555
Q ss_pred CCCCCccccCCCCCcEEEcccCCCCCC-----CC---hhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCc
Q 006657 237 NSLPELPIANFSSLYTLDLSYNEFDNT-----LV---PSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN 308 (636)
Q Consensus 237 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~-----~~---~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 308 (636)
+..| ..+.++++|+.|++++|...+. +| ...+..+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 286 ~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 286 HLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp EECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 4444 3455555555555554433221 11 1256667788888888888887777778888877777777765
Q ss_pred CCccc--chhhhC--CCCCCEEEccCcccccccCc------cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc
Q 006657 309 FISSI--PTWLHK--FTRLEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG 378 (636)
Q Consensus 309 l~~~~--p~~l~~--l~~L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~ 378 (636)
+.... +..+.. .++|++|++++|++++..|. .|+.|++++|.+.+.+|...+..+++|++|++++|++++
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 43211 111211 13455555555555544332 445555555555544443222234555555555555444
Q ss_pred c--------------------------CccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcccccccccee
Q 006657 379 Q--------------------------IPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTI 432 (636)
Q Consensus 379 ~--------------------------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 432 (636)
. +|..+..+++|++|++++|++++..|..+.++++|+.++.+...-.....
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 521 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK--- 521 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS---
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccch---
Confidence 4 44455555555555555555554444445555544443321100000000
Q ss_pred eceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCC
Q 006657 433 ELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512 (636)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 512 (636)
....+........++.|++|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++
T Consensus 522 -----~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 522 -----HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp -----TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred -----hhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 000011122356788999999999999954445799999999999999999977777789999999999999999
Q ss_pred CccCchhcc-CCCCCCeeeccCCcCcccCCC-CCccCCcc
Q 006657 513 SGRIPQSIS-SLTFLSHLNLSDNNLTGKIPL-GTQLQGFN 550 (636)
Q Consensus 513 ~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~-~~~~~~~~ 550 (636)
++..|..+. .+++|+++++++|++.|.|+. .+...|++
T Consensus 597 ~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp CBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred CccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 998888887 789999999999999999986 55555554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=397.00 Aligned_cols=419 Identities=18% Similarity=0.102 Sum_probs=324.6
Q ss_pred CCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCC
Q 006657 89 DEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQ 168 (636)
Q Consensus 89 ~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 168 (636)
..+..++.+++++|.+.+..+.++.++++|++|++++|.+++. .|..|+++++|++|++++|.+++..|..|+++++|+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 3446788999999999998888999999999999999999965 678899999999999999999988899999999999
Q ss_pred eEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCC
Q 006657 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS 248 (636)
Q Consensus 169 ~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 248 (636)
+|++++|.+...+... +.++++|++|++++|.+++.. ++..++++++|++|++++|++++..+ ..++.++
T Consensus 108 ~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 177 (606)
T 3vq2_A 108 NLVAVETKLASLESFP--------IGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLR 177 (606)
T ss_dssp EEECTTSCCCCSSSSC--------CTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHH
T ss_pred EEEccCCccccccccc--------cCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecCh-hhhhhhh
Confidence 9999999987754322 789999999999999998632 12368899999999999999986555 4455444
Q ss_pred CCc----EEEcccCCCCCCCChhhh-------------------------------------------------------
Q 006657 249 SLY----TLDLSYNEFDNTLVPSWL------------------------------------------------------- 269 (636)
Q Consensus 249 ~L~----~L~Ls~n~l~~~~~~~~l------------------------------------------------------- 269 (636)
+|+ +|++++|.++ .+++..+
T Consensus 178 ~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp HCTTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred ccccccceeeccCCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 433 5666655554 2332222
Q ss_pred -------------------------cCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCC
Q 006657 270 -------------------------FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLE 324 (636)
Q Consensus 270 -------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 324 (636)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|+
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~ 331 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLK 331 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCC
T ss_pred hhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccc
Confidence 22344444444444443 233 556666777777777776 4566 34 667777
Q ss_pred EEEccCcccccccC----ccceEEEccCCCCccc--cchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCc
Q 006657 325 YLSLRENRLQGMIS----SVLVVFDIGENGFSGN--IPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHN 398 (636)
Q Consensus 325 ~L~L~~n~l~~~~p----~~L~~L~l~~n~l~g~--ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 398 (636)
+|++++|+..+.++ ..|+.|++++|.+++. +|..+.. +++|++|++++|.+++ +|..+..+++|+.|++++|
T Consensus 332 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp EEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTS
T ss_pred eeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCcccc-chhhccCCCCCCeeECCCC
Confidence 77777775444332 3688888888888765 3666654 7888888888888875 5677888888888888888
Q ss_pred cCccccc-hhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCcc-CCccccccc
Q 006657 399 NFSGTLP-RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD-IPEEMTNLL 476 (636)
Q Consensus 399 ~l~~~~p-~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~-~p~~~~~l~ 476 (636)
++++..| ..+.++++|+.++.... .+.+..+.....+++|++|++++|.+++. +|..++.++
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n----------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYT----------------NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTS----------------CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccCCccChhhhhccccCCEEECcCC----------------CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 8887777 56777777765543111 12233445566788899999999999984 789999999
Q ss_pred CCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC
Q 006657 477 ALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 477 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
+|++|++++|++++..|..++.+++|++|++++|++++.+|..+..+++|++|++++|+++ .+|..
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 56654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-44 Score=393.60 Aligned_cols=454 Identities=20% Similarity=0.196 Sum_probs=332.9
Q ss_pred CcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCC
Q 006657 61 CCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFM 140 (636)
Q Consensus 61 ~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l 140 (636)
.|.|.|+ |+....++++ ++...+..++.+++++|.+.+..|.++.++++|++|++++|.+++. .|..++.+
T Consensus 3 ~C~~~~~-c~~~~~~l~~-------ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l 73 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTS-------IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSL 73 (549)
T ss_dssp EECTTSE-EECTTSCCSS-------CCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTC
T ss_pred cCCCCce-EECCCCcccc-------ccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-Chhhcccc
Confidence 4999998 8753322321 1222234567777777898888888999999999999999999865 66789999
Q ss_pred CCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCC-CCCCCChhhhh
Q 006657 141 GSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD-LSTASDWFLVT 219 (636)
Q Consensus 141 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 219 (636)
++|++|++++|++++..|..++++++|++|++++|.+...+.+ ..+.++++|++|++++|. +...+. ..+
T Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~~l~~L~~L~L~~n~~~~~~~~--~~~ 144 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-------SLFPNLTNLQTLRIGNVETFSEIRR--IDF 144 (549)
T ss_dssp TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-------CSCTTCTTCCEEEEEESSSCCEECT--TTT
T ss_pred ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh-------hhhhccCCccEEECCCCccccccCH--hhh
Confidence 9999999999999987777799999999999999988764332 237889999999999998 444331 257
Q ss_pred CCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccC--Cc-cccCC
Q 006657 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPI--PD-GLQNL 296 (636)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~-~l~~l 296 (636)
..+++|++|++++|.+++..| ..+.++++|++|++++|.+. .++...+..+++|++|++++|++++.. |. ....+
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 222 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCC
T ss_pred hcccccCeeeccCCcccccCh-hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhh
Confidence 789999999999999998888 68899999999999999885 556455577899999999999998642 21 23456
Q ss_pred CCCCEEEccCCcCCcccchhh----hCCCCCCEEEccCcccccc------------------------------------
Q 006657 297 TSLEHLDLRSNNFISSIPTWL----HKFTRLEYLSLRENRLQGM------------------------------------ 336 (636)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~------------------------------------ 336 (636)
++|+.|++++|.+++..+..+ ..+++|+.+++++|.+.+.
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred hcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence 788888888887776544333 4456666666666665442
Q ss_pred -----cCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcc---ccCCCCCCCEEEccCccCccccc--h
Q 006657 337 -----ISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPA---ELCRLTSLHILDLSHNNFSGTLP--R 406 (636)
Q Consensus 337 -----~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p--~ 406 (636)
....++.+++++|.+. .+|..++..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ .
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 381 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh
Confidence 1136888888888886 78888866689999999999999887653 36788999999999999986533 4
Q ss_pred hhhhhhhhccccCCC----ccccccccceeeceEEEEeeccccccc--cccccccEEECcCCccCccCCcccccccCCCe
Q 006657 407 CINNLTAMMNQENSM----ETDKEYDTFTIELSILVVMKGRELAYN--TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQS 480 (636)
Q Consensus 407 ~l~~l~~L~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~ 480 (636)
.+..+++|+.++.+. .+|........ -....+.+...... ...+.|++|++++|++++.+ ..+++|++
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~--L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~ 455 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEK--MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQE 455 (549)
T ss_dssp HGGGCTTCCEEECTTCCCCCCCSCCCCCTT--CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCE
T ss_pred hhhcCCCCCEEECCCCCCccCChhhccccc--ccEEECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcE
Confidence 577777777665321 12221111000 00111222111111 11246888888888887643 46788888
Q ss_pred EeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC
Q 006657 481 LNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 481 L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..+++|++|++++|+++|.||..
T Consensus 456 L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 456 LYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp EECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred EECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 999999888 6776 467888899999999988888888888888999999999988888853
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=394.23 Aligned_cols=440 Identities=20% Similarity=0.197 Sum_probs=290.6
Q ss_pred cEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEc
Q 006657 75 RVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDL 148 (636)
Q Consensus 75 ~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L 148 (636)
+++.|+++++.+.+..+ ..++.+++++|.+.+..|..+.++++|++|++++|.+++. .|..|+.+++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccc
Confidence 56677777765543322 2345555666655555555556666666666666665543 3455556666666666
Q ss_pred cCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCC---
Q 006657 149 SRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL--- 225 (636)
Q Consensus 149 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L--- 225 (636)
++|++++..+..++++++|++|++++|.+....+| ..+.++++|++|++++|.+++.+. ..+..+++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-------~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~~ 178 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-------EYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLL 178 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-------GGGGGCTTCCEEECTTSCCCEECG--GGGHHHHTCTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecCh-------hhhcccCCCCEEeCcCCccceecH--HHccchhccchh
Confidence 66665544443455666666666666655443222 125555666666666665554421 122333334
Q ss_pred -CEEEeecCCCCCCCCCccccCCCCCcEEEcccCC---------------------------------------------
Q 006657 226 -QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE--------------------------------------------- 259 (636)
Q Consensus 226 -~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~--------------------------------------------- 259 (636)
+.|++++|.+.+..| ..+... +|+.|++++|.
T Consensus 179 ~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp CCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhcccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 556666666654333 333333 56666655542
Q ss_pred -------------CCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 260 -------------FDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 260 -------------l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+.+.++ ..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|
T Consensus 257 l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L 330 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRL 330 (570)
T ss_dssp SEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEE
T ss_pred cchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEE
Confidence 111122 44555677777777777776 466666666 7777777777776 4443 466777778
Q ss_pred EccCcccccccC----ccceEEEccCCCCcccc--chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccC
Q 006657 327 SLRENRLQGMIS----SVLVVFDIGENGFSGNI--PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNF 400 (636)
Q Consensus 327 ~L~~n~l~~~~p----~~L~~L~l~~n~l~g~i--p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 400 (636)
++++|.+.+..+ ..|+.|++++|.+++.. |..+.. +++|++|++++|.+++..+ .+..+++|++|++++|++
T Consensus 331 ~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l 408 (570)
T 2z63_A 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNL 408 (570)
T ss_dssp EEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEE
T ss_pred eCcCCccccccccccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCccccccc-cccccCCCCEEEccCCcc
Confidence 887777766554 36888888888887543 566654 7888888888888875443 478888888888888888
Q ss_pred ccccc-hhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccC-ccCCcccccccCC
Q 006657 401 SGTLP-RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS-GDIPEEMTNLLAL 478 (636)
Q Consensus 401 ~~~~p-~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-g~~p~~~~~l~~L 478 (636)
++..| ..+.++++|+.++.... .+.+..+.....+++|++|++++|.++ +.+|..+..+++|
T Consensus 409 ~~~~~~~~~~~l~~L~~L~l~~n----------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 409 KQMSEFSVFLSLRNLIYLDISHT----------------HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ESCTTSCTTTTCTTCCEEECTTS----------------CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccccchhhhhcCCCCCEEeCcCC----------------cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 76655 45666766665542111 112223445566788999999999998 6789999999999
Q ss_pred CeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCcc-CCcc
Q 006657 479 QSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQL-QGFN 550 (636)
Q Consensus 479 ~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~-~~~~ 550 (636)
++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++|.+|..+.+ .|+.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~ 545 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence 99999999999888999999999999999999999888888999999999999999999999987655 4544
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=408.74 Aligned_cols=458 Identities=18% Similarity=0.164 Sum_probs=339.3
Q ss_pred CCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCC-chhhcCCCCCCEEEccCCccCCCCCccCcCCCCCC
Q 006657 90 EPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQI-PVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQ 168 (636)
Q Consensus 90 ~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~i-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 168 (636)
.+..++.+++++|.+.+..|.++.++++|++|+|++|...+. + |..|+++++|++|+|++|.+.+..|..|+++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 456788999999999999999999999999999999976554 5 78899999999999999999999999999999999
Q ss_pred eEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCC-
Q 006657 169 YLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF- 247 (636)
Q Consensus 169 ~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l- 247 (636)
+|++++|.+.+..... ..+.++++|++|++++|.+++.+. ...++++++|++|++++|.+++..+ ..+..+
T Consensus 101 ~L~Ls~n~l~~~~~~~------~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l~ 172 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKD------GYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLVCE-HELEPLQ 172 (844)
T ss_dssp CEECTTCCCSSCCSTT------CCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCCCS-GGGHHHH
T ss_pred EeeCcCCCCCcccccC------ccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCeeCH-HHccccc
Confidence 9999999886522111 227889999999999999988732 2357899999999999999997777 677777
Q ss_pred -CCCcEEEcccCCCCCCCChhhhcCCCC------CcEEEccCCcCcccCCccccC-------------------------
Q 006657 248 -SSLYTLDLSYNEFDNTLVPSWLFGLSH------LVFLDLGFNSFGGPIPDGLQN------------------------- 295 (636)
Q Consensus 248 -~~L~~L~Ls~n~l~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~------------------------- 295 (636)
++|+.|+++.|.+.+..+ ..+..+.+ |++|++++|.+++..|..+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 899999999999998776 55555544 999999999887766654432
Q ss_pred -------------CCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc------cceEEEccCCCCccccc
Q 006657 296 -------------LTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------VLVVFDIGENGFSGNIP 356 (636)
Q Consensus 296 -------------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~L~~L~l~~n~l~g~ip 356 (636)
.++|++|++++|.+.+..|..+..+++|++|++++|++++..|. .|+.|++++|.+.+..|
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 26799999999999888888888999999999999998877654 78899999999987667
Q ss_pred hHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC-Cccccccccc-----
Q 006657 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS-METDKEYDTF----- 430 (636)
Q Consensus 357 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~-~~~~~~~~~~----- 430 (636)
..+.. +++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++. +.+++.+....+. ..++......
T Consensus 332 ~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 332 SNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF-IPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp CSCSS-CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS-CCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred HHhcC-CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC-CCCcchhccCCCCcccccccccccceeec
Confidence 76664 8899999999999987777788889999999999998874 222 2222222111110 0111110000
Q ss_pred ---------------eeeceEEEEeeccccc------cccccccccEEECcCCccC-----ccCCcccccccCCCeEeCC
Q 006657 431 ---------------TIELSILVVMKGRELA------YNTMLKLVRCMDLSGNNLS-----GDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 431 ---------------~~~~~~~~~~~~~~~~------~~~~~~~L~~L~Ls~N~l~-----g~~p~~~~~l~~L~~L~Ls 484 (636)
.........+.+.... ....+++|+.|++++|.++ +..|..+.++++|++|+|+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 0000000111111111 1223455666666666665 3334567778888888888
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCCCCCCCCC
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAPL 564 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lc~~~~ 564 (636)
+|++++..|..|..+++|+.|+|++|++++..|..+. ++|++|++++|++++.+|.. +..+....+.+| |+
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N-----p~ 559 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN-----KF 559 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE-----CC
T ss_pred CCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCC-----Cc
Confidence 8888888888888888888888888888876666555 78888888888888877753 444444445544 44
Q ss_pred CCCCC
Q 006657 565 PKNCT 569 (636)
Q Consensus 565 ~~~c~ 569 (636)
.|.|.
T Consensus 560 ~C~c~ 564 (844)
T 3j0a_A 560 ICECE 564 (844)
T ss_dssp CCSSS
T ss_pred ccccc
Confidence 55554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=398.53 Aligned_cols=409 Identities=16% Similarity=0.219 Sum_probs=267.2
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc------CC------CC---------------------CccCc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL------TG------MI---------------------PHQLG 162 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l------~~------~~---------------------p~~l~ 162 (636)
.+++.|+|+++.+.|. +|..++++++|++|++++|.+ .+ .+ |..+.
T Consensus 81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 4788999999999986 999999999999999999965 11 11 11111
Q ss_pred -------------------CCCCCCeEecc--CCCCCCcccccccccccccccCCCCCcEEEccCCCCCC----------
Q 006657 163 -------------------NLFNLQYLDLS--IDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLST---------- 211 (636)
Q Consensus 163 -------------------~l~~L~~L~Ls--~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~---------- 211 (636)
....++.+.+. .|+++++ ...++++++|++|+|++|.+++
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i---------p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV---------SKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE---------CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccC---------CHHHhcccCCCEEECcCCcccccccccccccc
Confidence 00011111111 1112111 1235666667777777666666
Q ss_pred --------CCChhhhhC--CCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCC-CCC-CCChhhhcCC------C
Q 006657 212 --------ASDWFLVTN--MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE-FDN-TLVPSWLFGL------S 273 (636)
Q Consensus 212 --------~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~l~~l------~ 273 (636)
.|. .++ ++++|++|++++|.+.+.+| ..++++++|++|++++|+ ++| .+| ..++.+ +
T Consensus 231 ~~~~~~~~ip~---~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~ 305 (636)
T 4eco_A 231 NSEYAQQYKTE---DLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLK-DDWQALADAPVGE 305 (636)
T ss_dssp TSHHHHHHTTS---CCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHH-HHHHHHHHSGGGG
T ss_pred ccchhcccCch---hhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccch-HHHHhhhccccCC
Confidence 332 455 66677777777776666666 566666777777777776 665 455 445444 6
Q ss_pred CCcEEEccCCcCcccCCc--cccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCc------c-ceEE
Q 006657 274 HLVFLDLGFNSFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISS------V-LVVF 344 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------~-L~~L 344 (636)
+|++|++++|+++ .+|. .++++++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|. . |+.|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 6777777777666 5666 66666777777777777666666 6666666777777777666 3332 3 6667
Q ss_pred EccCCCCccccchHHHHh-hhcCceEecCCCcCcccCccccC-------CCCCCCEEEccCccCccccchh-hhhhhhhc
Q 006657 345 DIGENGFSGNIPAWIGEK-LLRNLILRLRSNKFDGQIPAELC-------RLTSLHILDLSHNNFSGTLPRC-INNLTAMM 415 (636)
Q Consensus 345 ~l~~n~l~g~ip~~~~~~-~~~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~ 415 (636)
++++|.++ .+|..+... +++|+.|++++|.+++.+|..+. .+++|++|++++|+++ .+|.. +..++.|+
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS 460 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC
Confidence 77777666 566554320 22566777777777766666666 5666777777777766 34433 33455555
Q ss_pred cccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccc--cccCCCeEeCCCccCcCCCC
Q 006657 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT--NLLALQSLNLSHNFLAGKIP 493 (636)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~Ls~N~l~~~ip 493 (636)
.++.....-....... ..+ .......+++|++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|
T Consensus 461 ~L~Ls~N~l~~i~~~~--------~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 461 SINLMGNMLTEIPKNS--------LKD-ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FP 529 (636)
T ss_dssp EEECCSSCCSBCCSSS--------SEE-TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred EEECCCCCCCCcCHHH--------hcc-ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence 4432110000000000 000 0001123447999999999999 8898887 99999999999999997 89
Q ss_pred ccccCCCCCCEEeC------CCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC
Q 006657 494 ENVGAMRSLESIDF------SGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN 557 (636)
Q Consensus 494 ~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n 557 (636)
..+..+++|++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|... ...+....+.+|
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N 597 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDN 597 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSC
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCC
Confidence 99999999999999 56889999999999999999999999999 7898753 355555556665
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-42 Score=370.93 Aligned_cols=373 Identities=21% Similarity=0.196 Sum_probs=290.4
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCC-CccCcCCCCCCeEeccCCCCCCccccccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMI-PHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLS 194 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~ 194 (636)
++|++|+|++|.+++. .|..++++++|++|++++|.+.+.+ |..|.++++|++|++++|.+..... ..+.
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET--------GAFN 100 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT--------TTTT
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh--------hhcc
Confidence 5777888888877754 5677777888888888887776554 4567777888888888777654321 1266
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC--
Q 006657 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL-- 272 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l-- 272 (636)
++++|++|++++|.+++.......+..+++|++|++++|.+++..|...+.++++|++|++++|.+++..+ ..+..+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh-hhhhcccc
Confidence 77778888888877765311111367788888888888888876674347888889999999888875544 666555
Q ss_pred CCCcEEEccCCcCcccCCcc--------ccCCCCCCEEEccCCcCCcccchhhhCC---CCCCEEEccCcccccccCccc
Q 006657 273 SHLVFLDLGFNSFGGPIPDG--------LQNLTSLEHLDLRSNNFISSIPTWLHKF---TRLEYLSLRENRLQGMISSVL 341 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~L 341 (636)
.+|+.|++++|.+.+..+.. +..+++|++|++++|++++..|..+... ++|+.|++++|...+..
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---- 255 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---- 255 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC----
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc----
Confidence 67888999999888654433 2356889999999999998888777654 78999999988766542
Q ss_pred eEEEccCCCCccccchHHHH-hhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC
Q 006657 342 VVFDIGENGFSGNIPAWIGE-KLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS 420 (636)
Q Consensus 342 ~~L~l~~n~l~g~ip~~~~~-~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 420 (636)
+..+.+.+..+..+.. ..++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+.++++
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------- 324 (455)
T 3v47_A 256 ----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH------- 324 (455)
T ss_dssp ----TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT-------
T ss_pred ----cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc-------
Confidence 2223333222222211 2468999999999999999999999999999999999999888877776654
Q ss_pred CccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCC
Q 006657 421 METDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR 500 (636)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 500 (636)
|++|+|++|.+++..|..++++++|++|+|++|++++..|..+..++
T Consensus 325 ---------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 325 ---------------------------------LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp ---------------------------------CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred ---------------------------------CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 88999999999988899999999999999999999998899999999
Q ss_pred CCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCcc
Q 006657 501 SLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQL 546 (636)
Q Consensus 501 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 546 (636)
+|++|++++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999999999877778899999999999999999999965433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=383.00 Aligned_cols=424 Identities=17% Similarity=0.149 Sum_probs=299.8
Q ss_pred EEEcCCCCCCCCC---CccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccC
Q 006657 78 ELRLGNPFLHDDE---PFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELT 154 (636)
Q Consensus 78 ~L~L~~~~l~~~~---~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~ 154 (636)
.+|++++.+.... +..++.+++++|.+.+..|.++.++++|++|++++|.+++. .|..++++++|++|++++|+++
T Consensus 4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp EEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC
T ss_pred eEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee
Confidence 5788887766322 24677788888888877777888888888888888888864 5778888888888888888888
Q ss_pred CCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCC--CEEEeec
Q 006657 155 GMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL--QVLKLSA 232 (636)
Q Consensus 155 ~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L--~~L~L~~ 232 (636)
.+|.. .+++|++|++++|.+...++| ..++++++|++|++++|.+++. .+..+++| ++|++++
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p-------~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPIC-------KEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVL 147 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCC-------GGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEE
T ss_pred -ecCcc--ccCCccEEeccCCccccccch-------hhhccCCcceEEEecCcccchh-----hccccccceeeEEEeec
Confidence 56665 788888888888887665433 2377888888888888888763 34556666 8888888
Q ss_pred CCC--CCCCCCccccC--------------------------CCCCcEEEcccCC-------CCCCCChhhhcCCCCCcE
Q 006657 233 CSL--HNSLPELPIAN--------------------------FSSLYTLDLSYNE-------FDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 233 n~l--~~~~p~~~~~~--------------------------l~~L~~L~Ls~n~-------l~~~~~~~~l~~l~~L~~ 277 (636)
|.+ .+..| ..+.. +++|+.|++++|. +.+.+ ..+..+++|++
T Consensus 148 n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~l~~l~~L~~ 224 (520)
T 2z7x_B 148 GETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL--AKLQTNPKLSN 224 (520)
T ss_dssp CTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH--HGGGGCTTCCE
T ss_pred cccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch--hhhccccchhh
Confidence 888 55555 33433 4444444444443 22211 13444455555
Q ss_pred EEccCCcCcccCCcccc---CCCCCCEEEccCCcCCcccchhh-----hCCCCCCEEEccCcccccccC----------c
Q 006657 278 LDLGFNSFGGPIPDGLQ---NLTSLEHLDLRSNNFISSIPTWL-----HKFTRLEYLSLRENRLQGMIS----------S 339 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p----------~ 339 (636)
|++++|.+++..+..+. ..++|++|++++|+++|.+|..+ +.+++|+.+++++|.+ .+| .
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence 55555444432211111 13478888888888888888777 7788888888888887 445 3
Q ss_pred cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc--ccchhhhhhhhhccc
Q 006657 340 VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG--TLPRCINNLTAMMNQ 417 (636)
Q Consensus 340 ~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~~ 417 (636)
.++.|++++|.+.+.... ..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+.++++|+.+
T Consensus 303 ~L~~L~l~~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred ceeEEEcCCCccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 588888888887643210 137788888888888888788888888888888888888886 566677777776655
Q ss_pred cCCCccccccccceeeceEEEEeecccc-ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccc
Q 006657 418 ENSMETDKEYDTFTIELSILVVMKGREL-AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV 496 (636)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~ 496 (636)
+.+... +.+..+ .....++.|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+
T Consensus 380 ~Ls~N~----------------l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~ 440 (520)
T 2z7x_B 380 DISQNS----------------VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQV 440 (520)
T ss_dssp ECCSSC----------------CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGG
T ss_pred ECCCCc----------------CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhh
Confidence 431110 011011 1133456789999999999888877664 78999999999998 788888
Q ss_pred cCCCCCCEEeCCCCCCCccCchh-ccCCCCCCeeeccCCcCcccCCCCCc
Q 006657 497 GAMRSLESIDFSGNLLSGRIPQS-ISSLTFLSHLNLSDNNLTGKIPLGTQ 545 (636)
Q Consensus 497 ~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~~~ 545 (636)
..+++|++|++++|+++ .+|.. +..+++|++|++++|+++|.|+..+.
T Consensus 441 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 441 VKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp GGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred hcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 89999999999999998 45554 88889999999999999988875444
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=391.49 Aligned_cols=394 Identities=19% Similarity=0.221 Sum_probs=235.1
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEc-cCCccCCC--------------------------------------
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDL-SRAELTGM-------------------------------------- 156 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L-~~n~l~~~-------------------------------------- 156 (636)
.+++.|+|++|.+.|. +|..++++++|++|+| ++|.++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5799999999999986 9999999999999999 88876655
Q ss_pred --------------------------------------CCccCcCCCCCCeEeccCCCCCCccccc--ccc-------cc
Q 006657 157 --------------------------------------IPHQLGNLFNLQYLDLSIDTHNPISFSF--LYL-------EN 189 (636)
Q Consensus 157 --------------------------------------~p~~l~~l~~L~~L~Ls~n~~~~~~~~~--~~~-------~~ 189 (636)
+|..++++++|++|+|++|.+.+..++. .+. ..
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 4444555555555555555544310000 000 00
Q ss_pred ccccc--CCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCC-CCC-CCCCccccC-------CCCCcEEEcccC
Q 006657 190 FSWLS--GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS-LHN-SLPELPIAN-------FSSLYTLDLSYN 258 (636)
Q Consensus 190 l~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~~-------l~~L~~L~Ls~n 258 (636)
...++ ++++|++|+|++|.+.+.. +..+.++++|++|++++|+ +++ .+| ..+++ +++|+.|++++|
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ChhhhhccCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCC
Confidence 01133 4555555555555444331 1234445555555555554 444 344 22222 225555555555
Q ss_pred CCCCCCChh--hhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCC-CCEEEccCccccc
Q 006657 259 EFDNTLVPS--WLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTR-LEYLSLRENRLQG 335 (636)
Q Consensus 259 ~l~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~ 335 (636)
.++ .+| . .++++++|++|++++|+++ .+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|+++
T Consensus 559 ~L~-~ip-~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 559 NLE-EFP-ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp CCC-BCC-CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred cCC-ccC-ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 554 444 3 4555555555555555554 444 4555555555555555554 44444555554 555555555554
Q ss_pred ccCc--------cceEEEccCCCCccccchHH---HH-hhhcCceEecCCCcCcccCcccc-CCCCCCCEEEccCccCcc
Q 006657 336 MISS--------VLVVFDIGENGFSGNIPAWI---GE-KLLRNLILRLRSNKFDGQIPAEL-CRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 336 ~~p~--------~L~~L~l~~n~l~g~ip~~~---~~-~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~ 402 (636)
.+|. .|+.|++++|.+.|.+|... .. ..++|+.|++++|.++ .+|..+ ..+++|+.|+|++|+++
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence 2222 14555555555554443211 00 0124555555555555 333332 24455555555555554
Q ss_pred ccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccc--cccCCCe
Q 006657 403 TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT--NLLALQS 480 (636)
Q Consensus 403 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~ 480 (636)
.+|..+.... .....++++|+.|+|++|+++ .+|..+. .+++|+.
T Consensus 711 ~ip~~~~~~~--------------------------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 711 SIPENSLKPK--------------------------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp CCCTTSSSCT--------------------------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred ccChHHhccc--------------------------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE
Confidence 3333221100 001123457999999999999 8899887 9999999
Q ss_pred EeCCCccCcCCCCccccCCCCCCEEeCCC------CCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCcccccc
Q 006657 481 LNLSHNFLAGKIPENVGAMRSLESIDFSG------NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCF 554 (636)
Q Consensus 481 L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~ 554 (636)
|+|++|++++ +|..++.+++|+.|+|++ |++.+.+|..+..+++|++|++++|++ +.+|.. ....+....+
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdL 834 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDI 834 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEEC
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEEC
Confidence 9999999997 899999999999999977 889999999999999999999999999 889976 2344444445
Q ss_pred CCC
Q 006657 555 AGN 557 (636)
Q Consensus 555 ~~n 557 (636)
.+|
T Consensus 835 s~N 837 (876)
T 4ecn_A 835 ADN 837 (876)
T ss_dssp CSC
T ss_pred CCC
Confidence 554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=379.87 Aligned_cols=433 Identities=20% Similarity=0.169 Sum_probs=285.6
Q ss_pred CCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCC
Q 006657 88 DDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL 167 (636)
Q Consensus 88 ~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 167 (636)
..+|..++.+++++|.+.+..+.+|.++++|++|||++|.+++. .|..|.++++|++|+|++|++++..+..|.++++|
T Consensus 48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 33445566777777777766666788888888888888888743 44567788888888888888876666667888888
Q ss_pred CeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCC
Q 006657 168 QYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 247 (636)
Q Consensus 168 ~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l 247 (636)
++|++++|++...+... ++++++|++|++++|.++..+. +..+..+++|++|++++|++++..+ ..+..+
T Consensus 127 ~~L~Ls~N~l~~l~~~~--------~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L 196 (635)
T 4g8a_A 127 QKLVAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVL 196 (635)
T ss_dssp CEEECTTSCCCCSTTCC--------CTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECG-GGGHHH
T ss_pred CEEECCCCcCCCCChhh--------hhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCcccccccc-ccccch
Confidence 88888888776653221 6777888888888887766421 2245667788888888887765433 333322
Q ss_pred CCC----cEEEcccCCCCC-----------------------CCChhhhcCCC---------------------------
Q 006657 248 SSL----YTLDLSYNEFDN-----------------------TLVPSWLFGLS--------------------------- 273 (636)
Q Consensus 248 ~~L----~~L~Ls~n~l~~-----------------------~~~~~~l~~l~--------------------------- 273 (636)
+++ ..++++.|.++. .+.+..+..+.
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 221 123333333321 01101111111
Q ss_pred ------------------------------CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc----------
Q 006657 274 ------------------------------HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI---------- 313 (636)
Q Consensus 274 ------------------------------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~---------- 313 (636)
+++.+++.++.+... ..+.....|+.|++.+|.+.+..
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhc
Confidence 122222222221110 11222334444554444433211
Q ss_pred ---------chhhhCCCCCCEEEccCccccccc--C------ccceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 314 ---------PTWLHKFTRLEYLSLRENRLQGMI--S------SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 314 ---------p~~l~~l~~L~~L~L~~n~l~~~~--p------~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
+.....+++|++|++++|.+.... + ..++.+++..+...+. +..+. .+++|+.+++..++.
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~-~l~~L~~l~l~~~~~ 432 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFL-GLEQLEHLDFQHSNL 432 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCT-TCTTCCEEECTTSEE
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-ccccc-ccccccchhhhhccc
Confidence 112345678888888888776432 1 2677888888776643 33333 277888888887776
Q ss_pred cccCc-cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccccccccccccc
Q 006657 377 DGQIP-AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVR 455 (636)
Q Consensus 377 ~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 455 (636)
....+ ..+..+++++.++++.|++.+..|..+..++.++.+...+.. ...+..+.....+++|+
T Consensus 433 ~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~---------------~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---------------FQENFLPDIFTELRNLT 497 (635)
T ss_dssp ESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE---------------EGGGEECSCCTTCTTCC
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhhhhhhcc---------------cccccCchhhhhccccC
Confidence 65443 456777888888888888887777777776666544321100 01111233445677899
Q ss_pred EEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCC-CCCCeeeccCC
Q 006657 456 CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL-TFLSHLNLSDN 534 (636)
Q Consensus 456 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N 534 (636)
+|||++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|||++|++++..|..+..+ ++|++|++++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999999999999999999999999999889999999999999999999999999999988 68999999999
Q ss_pred cCcccCCCCCccCCcc
Q 006657 535 NLTGKIPLGTQLQGFN 550 (636)
Q Consensus 535 ~l~g~ip~~~~~~~~~ 550 (636)
+|+|.|...+..+|+.
T Consensus 578 p~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 578 DFACTCEHQSFLQWIK 593 (635)
T ss_dssp CBCCSGGGHHHHHHHH
T ss_pred CCcccCCcHHHHHHHH
Confidence 9999998766555554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=345.74 Aligned_cols=224 Identities=27% Similarity=0.462 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCcc--cccEEeCCCC--CcEEEEEcCCCCCCCCCCccccccCCCCCcc
Q 006657 30 GCIQSERKALLRFKQDLKDPANRLASWS-DGNCCT--WAGVVCNDST--GRVLELRLGNPFLHDDEPFWLEDYDDETSKL 104 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~~~~l~~W~-~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l 104 (636)
.|.++|++||++||+++.+|. .+++|+ +.+||. |.||+|+..+ ++|++|+|+++ .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~------------------~l 62 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------------NL 62 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------------CC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC------------------Cc
Confidence 699999999999999998876 789998 678998 9999998654 78999999887 66
Q ss_pred ee--ecCccccCCCCCCEEeCCC-CCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 105 IG--KINPSLLDLKHLVYLDLSN-NNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 105 ~g--~i~~~l~~l~~L~~L~Ls~-n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
.| .+|+++.++++|++|++++ |.+.+. +|..++++++|++|++++|++++.+|..++++++|++|++++|.+
T Consensus 63 ~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l---- 137 (313)
T 1ogq_A 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---- 137 (313)
T ss_dssp SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE----
T ss_pred cCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc----
Confidence 67 7888888888888888884 777765 777777778888888877777777776666666666666655533
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
++.+| ..+.++++|++|++++|.++
T Consensus 138 ------------------------------------------------------~~~~p-~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 138 ------------------------------------------------------SGTLP-PSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp ------------------------------------------------------ESCCC-GGGGGCTTCCEEECCSSCCE
T ss_pred ------------------------------------------------------CCcCC-hHHhcCCCCCeEECcCCccc
Confidence 22233 23444445555555555554
Q ss_pred CCCChhhhcCCC-CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 262 NTLVPSWLFGLS-HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 262 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+.+| ..+..++ +|++|++++|++++.+|..+..++ |++|++++|++++..|..+..+++|++|++++|+++
T Consensus 163 ~~~p-~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 163 GAIP-DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp EECC-GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCC-HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 4444 4444444 555555555555555555555554 555555555555555555555555555555544443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=369.29 Aligned_cols=450 Identities=18% Similarity=0.182 Sum_probs=280.1
Q ss_pred EEEEcCCCCCCCC---CCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc
Q 006657 77 LELRLGNPFLHDD---EPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153 (636)
Q Consensus 77 ~~L~L~~~~l~~~---~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l 153 (636)
+.++++++.+++. .+..++.+++++|.+.+..|.++.++++|++|++++|.+++. .|..|+.+++|++|++++|++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcC
Confidence 6788888876642 235678888899998887778889999999999999998864 577888899999999999988
Q ss_pred CCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCC--CEEEee
Q 006657 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL--QVLKLS 231 (636)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L--~~L~L~ 231 (636)
+ .+|.. .+++|++|++++|++...+.+ ..+.++++|++|++++|.++.. .+..+++| ++|+++
T Consensus 113 ~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p-------~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 113 Q-NISCC--PMASLRHLDLSFNDFDVLPVC-------KEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLD 177 (562)
T ss_dssp C-EECSC--CCTTCSEEECCSSCCSBCCCC-------GGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEE
T ss_pred C-ccCcc--ccccCCEEECCCCCccccCch-------HhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEee
Confidence 8 66766 788999999999988765443 2377888999999999888764 23334444 999999
Q ss_pred cCCC--CCCCCCccccCCC--CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCC------------------------
Q 006657 232 ACSL--HNSLPELPIANFS--SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN------------------------ 283 (636)
Q Consensus 232 ~n~l--~~~~p~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n------------------------ 283 (636)
+|.+ ++..| ..+..++ .+ .+++++|.+.+.++...+..+++|+.|++++|
T Consensus 178 ~n~l~~~~~~~-~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 178 LVSYHIKGGET-ESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp ESSCCCCSSSC-CEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred cccccccccCc-ccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 9988 66555 3444332 11 22344444433333223333333333333333
Q ss_pred ----cCccc----CCccccCCCCCCEEEccCCcCCcccchhh-----hCCCCCCEEEccCcccccccC----------cc
Q 006657 284 ----SFGGP----IPDGLQNLTSLEHLDLRSNNFISSIPTWL-----HKFTRLEYLSLRENRLQGMIS----------SV 340 (636)
Q Consensus 284 ----~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p----------~~ 340 (636)
.+.+. ++.. ...++|++|++++|.++|.+|..+ ..++.|+.++++.+.+ .+| ..
T Consensus 256 L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC
T ss_pred ecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc
Confidence 22111 0111 112356666666666666666554 3444444444444443 222 13
Q ss_pred ceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc--ccchhhhhhhhhcccc
Q 006657 341 LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG--TLPRCINNLTAMMNQE 418 (636)
Q Consensus 341 L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~~~ 418 (636)
++.|++++|.+...... ..+++|++|++++|.+++.+|..+..+++|++|++++|++++ .+|..+.++++|+.++
T Consensus 333 L~~L~l~~n~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCP---PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred ceEEEccCCCcccccCc---cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 55555555544321100 124455555555555555555555555555555555555553 2233444444444332
Q ss_pred CCCccccccccceeeceEEEEeeccc-cccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCcccc
Q 006657 419 NSMETDKEYDTFTIELSILVVMKGRE-LAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVG 497 (636)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 497 (636)
.+... +.+.. ......++.|++|++++|++++.+|..+. ++|++|+|++|+++ .+|..+.
T Consensus 410 l~~N~----------------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~ 470 (562)
T 3a79_B 410 VSLNS----------------LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT 470 (562)
T ss_dssp CTTSC----------------CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT
T ss_pred CCCCc----------------CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc
Confidence 21100 00000 01122345699999999999988887665 79999999999999 7888888
Q ss_pred CCCCCCEEeCCCCCCCccCchh-ccCCCCCCeeeccCCcCcccCCCCCccC-Ccccc--ccCCCCCCCCCCCCCCCC
Q 006657 498 AMRSLESIDFSGNLLSGRIPQS-ISSLTFLSHLNLSDNNLTGKIPLGTQLQ-GFNAS--CFAGNNLCGAPLPKNCTD 570 (636)
Q Consensus 498 ~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~~~~~-~~~~~--~~~~n~lc~~~~~~~c~~ 570 (636)
.+++|++|++++|+++ .+|.. +..+++|++|++++|++.|.||..+.++ +.... .+..+.-|+.|....|..
T Consensus 471 ~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 9999999999999999 56665 8999999999999999999998765544 22211 111112235565666763
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=368.15 Aligned_cols=443 Identities=19% Similarity=0.168 Sum_probs=356.9
Q ss_pred CCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCC
Q 006657 87 HDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFN 166 (636)
Q Consensus 87 ~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 166 (636)
+...+..++.+++++|.+.+..+.++.++++|++|++++|.+++. .|..|+++++|++|++++|++++..|..|+++++
T Consensus 23 p~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 23 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 334456788999999999998888999999999999999999864 5678999999999999999999888899999999
Q ss_pred CCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccC
Q 006657 167 LQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 246 (636)
Q Consensus 167 L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~ 246 (636)
|++|++++|.+...+... ++++++|++|++++|.+++.. ++..+.++++|++|++++|.+++..+ ..++.
T Consensus 102 L~~L~L~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~ 171 (570)
T 2z63_A 102 LQKLVAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRV 171 (570)
T ss_dssp CCEEECTTSCCCCSTTCS--------CTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECTTSCCCEECG-GGGHH
T ss_pred cccccccccccccCCCcc--------ccccccccEEecCCCccceec-ChhhhcccCCCCEEeCcCCccceecH-HHccc
Confidence 999999999887754321 789999999999999998742 12367889999999999999986555 67888
Q ss_pred CCCC----cEEEcccCCCCCCCChhhhcCCCCCcEEEccCC---------------------------------------
Q 006657 247 FSSL----YTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN--------------------------------------- 283 (636)
Q Consensus 247 l~~L----~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n--------------------------------------- 283 (636)
+++| +.|++++|.+++ +++..+... +|++|++++|
T Consensus 172 l~~L~~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 249 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTT
T ss_pred hhccchhhhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchh
Confidence 8888 899999999985 444666655 7888888876
Q ss_pred -------------------cCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccC---ccc
Q 006657 284 -------------------SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS---SVL 341 (636)
Q Consensus 284 -------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p---~~L 341 (636)
.+.+..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+..... ..|
T Consensus 250 ~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L 327 (570)
T 2z63_A 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSL 327 (570)
T ss_dssp TTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSC
T ss_pred hhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCccccccc
Confidence 333455667778899999999999887 577778888 99999999998873322 378
Q ss_pred eEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccC--ccccCCCCCCCEEEccCccCccccchhhhhhhhhccccC
Q 006657 342 VVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQI--PAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419 (636)
Q Consensus 342 ~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~ 419 (636)
+.+++++|.+.+.++. ..+++|+.|++++|.+++.. |..+..+++|++|++++|++++..+. +..+++|+.++.
T Consensus 328 ~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l 403 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDF 403 (570)
T ss_dssp CEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEEC
T ss_pred CEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEc
Confidence 8999999998877766 24889999999999988654 67788899999999999998865444 777777766543
Q ss_pred CCccccccccceeeceEEEEeecccc-ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCc-CCCCcccc
Q 006657 420 SMETDKEYDTFTIELSILVVMKGREL-AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLA-GKIPENVG 497 (636)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-~~ip~~~~ 497 (636)
... .+.+..+ .....+++|++|++++|.+++..|..+.++++|++|++++|+++ +.+|..+.
T Consensus 404 ~~n----------------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 404 QHS----------------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp TTS----------------EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred cCC----------------ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 111 1111111 23456788999999999999999999999999999999999998 67999999
Q ss_pred CCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC-CccCCccccccCCCCCCCCCCCCCCC
Q 006657 498 AMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG-TQLQGFNASCFAGNNLCGAPLPKNCT 569 (636)
Q Consensus 498 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~lc~~~~~~~c~ 569 (636)
.+++|++|++++|++++..|..+..+++|++|++++|++++..|.. ..+..+....+. ++|+.+.|.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-----~N~~~~~~~ 535 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH-----TNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC-----SSCBCCCTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec-----CCcccCCCc
Confidence 9999999999999999999999999999999999999999876642 223334433444 445555564
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=361.07 Aligned_cols=424 Identities=21% Similarity=0.240 Sum_probs=330.9
Q ss_pred cccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccC
Q 006657 95 EDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174 (636)
Q Consensus 95 ~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 174 (636)
+.+++++|.+. .+|..+. ++|++|++++|.+++. .|..+.++++|++|++++|++++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46788999998 6888776 9999999999999975 668899999999999999999988899999999999999999
Q ss_pred CCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCC--cE
Q 006657 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL--YT 252 (636)
Q Consensus 175 n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L--~~ 252 (636)
|++..++ . . .+++|++|++++|.+++.+ .+..++.+++|++|++++|.+++ ..+..+++| +.
T Consensus 79 N~l~~lp--~--------~-~l~~L~~L~L~~N~l~~~~-~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 79 NKLVKIS--C--------H-PTVNLKHLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISK 142 (520)
T ss_dssp SCCCEEE--C--------C-CCCCCSEEECCSSCCSSCC-CCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEE
T ss_pred CceeecC--c--------c-ccCCccEEeccCCcccccc-chhhhccCCcceEEEecCcccch----hhccccccceeeE
Confidence 9887532 1 2 7899999999999998742 12367889999999999999986 357778888 99
Q ss_pred EEcccCCC--CCCCChhhhcC--------------------------CCCCcEEEccCCc-------CcccCCccccCCC
Q 006657 253 LDLSYNEF--DNTLVPSWLFG--------------------------LSHLVFLDLGFNS-------FGGPIPDGLQNLT 297 (636)
Q Consensus 253 L~Ls~n~l--~~~~~~~~l~~--------------------------l~~L~~L~L~~n~-------l~~~~p~~l~~l~ 297 (636)
|++++|.+ .+..| ..+.. +++|+.|++++|. +.+.+| .++.++
T Consensus 143 L~l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~ 220 (520)
T 2z7x_B 143 VLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP 220 (520)
T ss_dssp EEEEECTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT
T ss_pred EEeeccccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc
Confidence 99999999 55555 55544 5556666666665 444444 567777
Q ss_pred CCCEEEccCCcCCcccchhhh---CCCCCCEEEccCcccccccCc-----------cceEEEccCCCCccccc-hHHHHh
Q 006657 298 SLEHLDLRSNNFISSIPTWLH---KFTRLEYLSLRENRLQGMISS-----------VLVVFDIGENGFSGNIP-AWIGEK 362 (636)
Q Consensus 298 ~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~-----------~L~~L~l~~n~l~g~ip-~~~~~~ 362 (636)
+|++|++++|.+++..+..+. ..++|++|++++|+++|.+|. .|+.+++++|.+ .+| .++...
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~ 298 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI 298 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc
Confidence 788888877777654332221 246899999999999986664 567899999999 777 566542
Q ss_pred h--hcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEe
Q 006657 363 L--LRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVM 440 (636)
Q Consensus 363 ~--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (636)
+ .+++.|++++|.+.+.. .+..+++|++|++++|++++.+|..+.++++|+.++..... +
T Consensus 299 ~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~----------------l 360 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ----------------L 360 (520)
T ss_dssp HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC----------------C
T ss_pred cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc----------------c
Confidence 2 56999999999987432 12688999999999999999999999888888766432110 1
Q ss_pred ec--cccccccccccccEEECcCCccCccCCcc-cccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 441 KG--RELAYNTMLKLVRCMDLSGNNLSGDIPEE-MTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 441 ~~--~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
.+ ..+...+.+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip 437 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIP 437 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCC
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccc
Confidence 11 22344567889999999999999867764 88999999999999999988888765 79999999999999 788
Q ss_pred hhccCCCCCCeeeccCCcCcccCCCC--CccCCccccccCCCCCCCCCCCCCCC
Q 006657 518 QSISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNASCFAGNNLCGAPLPKNCT 569 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~lc~~~~~~~c~ 569 (636)
..+..+++|++|++++|+++ .+|.. ..+..+.... +.++|+.+.|.
T Consensus 438 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~-----l~~N~~~c~c~ 485 (520)
T 2z7x_B 438 KQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW-----LHTNPWDCSCP 485 (520)
T ss_dssp GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE-----CCSSCBCCCHH
T ss_pred hhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEE-----CcCCCCcccCC
Confidence 88889999999999999999 57764 1222333333 34455665664
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=358.63 Aligned_cols=400 Identities=21% Similarity=0.201 Sum_probs=296.0
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
++|+.+. ++|++|++++|.+++. .|..++++++|++|++++|++++..|..|+++++|++|++++|.+...+.
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---- 91 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS---- 91 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH----
T ss_pred cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH----
Confidence 6777664 7999999999999865 67889999999999999999998888999999999999999998876532
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (636)
..++++++|++|++++|.+++.+. +..+..+++|++|++++|.+.+.+|...+.++++|++|++++|.+++.++
T Consensus 92 ----~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 165 (549)
T 2z81_A 92 ----SWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS- 165 (549)
T ss_dssp ----HHHTTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-
T ss_pred ----HHhccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-
Confidence 237899999999999999986421 22578899999999999997667776689999999999999999997666
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCcc-ccCCCCCCEEEccCCcCCccc--c-hhhhCCCCCCEEEccCcccccccC----
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDG-LQNLTSLEHLDLRSNNFISSI--P-TWLHKFTRLEYLSLRENRLQGMIS---- 338 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~~L~L~~n~l~~~~p---- 338 (636)
..+..+++|++|++++|.+. .+|.. +..+++|++|++++|++++.. | .....+++|++|++++|.+++..+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 88999999999999999986 44544 367899999999999998742 2 223457899999999999887543
Q ss_pred ------ccceEEEccCCCCcccc--------------------------ch--------HHHHhhhcCceEecCCCcCcc
Q 006657 339 ------SVLVVFDIGENGFSGNI--------------------------PA--------WIGEKLLRNLILRLRSNKFDG 378 (636)
Q Consensus 339 ------~~L~~L~l~~n~l~g~i--------------------------p~--------~~~~~~~~L~~L~L~~n~l~~ 378 (636)
..++.+++++|.+.|.. |. .+.....+|+.|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 36788888888776520 10 11223568889999999987
Q ss_pred cCcccc-CCCCCCCEEEccCccCccccchh---hhhhhhhccccCCCccccccccceeeceEEEEeeccc--cccccccc
Q 006657 379 QIPAEL-CRLTSLHILDLSHNNFSGTLPRC---INNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRE--LAYNTMLK 452 (636)
Q Consensus 379 ~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 452 (636)
.+|..+ ..+++|++|++++|++++.+|.. ++.+++|+.++.....- .+.. ......++
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l----------------~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL----------------RSMQKTGEILLTLK 387 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC----------------CCHHHHHHHGGGCT
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc----------------cccccchhhhhcCC
Confidence 677766 57899999999999999877543 56666666554321100 0000 01234566
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccc------------------cCCCCCCEEeCCCCCCCc
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV------------------GAMRSLESIDFSGNLLSG 514 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~------------------~~l~~L~~L~Ls~N~l~~ 514 (636)
+|++||+++|+++ .+|..+..+++|++|++++|+++ .+|..+ ..+++|++|++++|+++
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK- 464 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-
Confidence 6777777777777 56777777777777777777765 333322 24555666666666655
Q ss_pred cCchhccCCCCCCeeeccCCcCcccCC
Q 006657 515 RIPQSISSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 515 ~~p~~l~~l~~L~~L~ls~N~l~g~ip 541 (636)
.+|. ...+++|++|++++|++++..|
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred cCCC-cccCccCCEEecCCCccCCcCH
Confidence 4444 3445566666666666665444
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=348.10 Aligned_cols=424 Identities=19% Similarity=0.222 Sum_probs=321.3
Q ss_pred cccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccC
Q 006657 95 EDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174 (636)
Q Consensus 95 ~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 174 (636)
+.++++++.+.+ +|..+. ++|++|++++|.+++. .|..++++++|++|++++|++++..|..|+++++|++|++++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 567888999885 887765 8999999999999975 667899999999999999999988899999999999999999
Q ss_pred CCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCC--cE
Q 006657 175 DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL--YT 252 (636)
Q Consensus 175 n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L--~~ 252 (636)
|++...+ . . .+++|++|++++|.+++.+. +..+.++++|++|++++|.+++. .+..+++| +.
T Consensus 110 N~l~~lp--~--------~-~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~ 173 (562)
T 3a79_B 110 NRLQNIS--C--------C-PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSC 173 (562)
T ss_dssp SCCCEEC--S--------C-CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEE
T ss_pred CcCCccC--c--------c-ccccCCEEECCCCCccccCc-hHhhcccCcccEEecCCCccccC----chhhhhhceeeE
Confidence 9887532 1 2 78999999999999987641 23678899999999999999752 35555566 99
Q ss_pred EEcccCCC--CCCCChhhhcCCC-CCcEEEccCCcCcccCCc-cccCCCCCCEEEccCCc--------------------
Q 006657 253 LDLSYNEF--DNTLVPSWLFGLS-HLVFLDLGFNSFGGPIPD-GLQNLTSLEHLDLRSNN-------------------- 308 (636)
Q Consensus 253 L~Ls~n~l--~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------------------- 308 (636)
|++++|.+ ++..+ ..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+
T Consensus 174 L~L~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 174 ILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEESSCCCCSSSC-CEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEeecccccccccCc-ccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 99999999 76665 6666654 122567888888876654 34566777777777763
Q ss_pred --------CCcc----cchhhhCCCCCCEEEccCcccccccCc--------c---ceEEEccCCCCccccc-hHHHHh--
Q 006657 309 --------FISS----IPTWLHKFTRLEYLSLRENRLQGMISS--------V---LVVFDIGENGFSGNIP-AWIGEK-- 362 (636)
Q Consensus 309 --------l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~--------~---L~~L~l~~n~l~g~ip-~~~~~~-- 362 (636)
+.+. ++..+ ..++|++|++++|.++|.+|. . |+.++++.+.+ .+| .++...
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~ 329 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred EEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence 1111 11111 234899999999999987774 2 34555666666 566 344332
Q ss_pred hhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
..+++.|++++|.+.... ....+++|++|++++|++++.+|..+.++++|+.++..... +.+
T Consensus 330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~----------------l~~ 391 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG----------------LKN 391 (562)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC----------------CCB
T ss_pred cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC----------------cCC
Confidence 256999999999986432 12688999999999999999999999888888766532110 111
Q ss_pred --cccccccccccccEEECcCCccCccCCc-ccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchh
Q 006657 443 --RELAYNTMLKLVRCMDLSGNNLSGDIPE-EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQS 519 (636)
Q Consensus 443 --~~~~~~~~~~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~ 519 (636)
..+.....+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence 1223456778899999999999986665 488999999999999999988887665 79999999999999 78887
Q ss_pred ccCCCCCCeeeccCCcCcccCCCC--CccCCccccccCCCCCCCCCCCCCCC
Q 006657 520 ISSLTFLSHLNLSDNNLTGKIPLG--TQLQGFNASCFAGNNLCGAPLPKNCT 569 (636)
Q Consensus 520 l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~lc~~~~~~~c~ 569 (636)
+..+++|++|++++|+++ .+|.. ..+..+... .+.++|+.+.|.
T Consensus 469 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L-----~l~~N~~~c~c~ 514 (562)
T 3a79_B 469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI-----WLHDNPWDCTCP 514 (562)
T ss_dssp TTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCE-----ECCSCCBCCCHH
T ss_pred hcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEE-----EecCCCcCCCcc
Confidence 889999999999999999 57764 222233323 344556666664
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=333.77 Aligned_cols=367 Identities=23% Similarity=0.243 Sum_probs=260.9
Q ss_pred CEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCC
Q 006657 119 VYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSL 198 (636)
Q Consensus 119 ~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~ 198 (636)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..++++++|++|++++|.+.....+ ..+.++++
T Consensus 13 ~~~~c~~~~l~--~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-------~~~~~l~~ 80 (455)
T 3v47_A 13 YNAICINRGLH--QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-------NTFRGLSS 80 (455)
T ss_dssp TEEECCSSCCS--SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-------TTTTTCTT
T ss_pred cccCcCCCCcc--cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECc-------cccccccc
Confidence 46778888887 4776 3 48899999999999988899999999999999999976432111 22667777
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCC-ccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 277 (636)
|++|++++|.+++.. +..+..+++|++|++++|.+++.++. ..+.++++|++|++++|.+++..|...+.++++|++
T Consensus 81 L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 81 LIILKLDYNQFLQLE--TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp CCEEECTTCTTCEEC--TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred CCEEeCCCCccCccC--hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 777777777776552 12456667777777777776653331 225666667777777776664444233666666666
Q ss_pred EEccCCcCcccCCccccCC--CCCCEEEccCCcCCcccchhh--------hCCCCCCEEEccCcccccccCccceEEEcc
Q 006657 278 LDLGFNSFGGPIPDGLQNL--TSLEHLDLRSNNFISSIPTWL--------HKFTRLEYLSLRENRLQGMISSVLVVFDIG 347 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l--------~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~ 347 (636)
|++++|++++..|..+..+ .+|+.|++++|.+.+..+..+ ..+++|++ |+++
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~------------------L~Ls 220 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT------------------LDLS 220 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE------------------EECT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeee------------------EecC
Confidence 7766666666666655544 566666666666654433221 12344444 4555
Q ss_pred CCCCccccchHHHHh--hhcCceEecCCCcCccc----------CccccC--CCCCCCEEEccCccCccccchhhhhhhh
Q 006657 348 ENGFSGNIPAWIGEK--LLRNLILRLRSNKFDGQ----------IPAELC--RLTSLHILDLSHNNFSGTLPRCINNLTA 413 (636)
Q Consensus 348 ~n~l~g~ip~~~~~~--~~~L~~L~L~~n~l~~~----------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 413 (636)
+|.+.+.+|..+... ..+++.|++++|...+. .+..+. ..++|++|++++|++++..|..+..+++
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 300 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCC
Confidence 555555566655542 16677777777755432 112222 2368999999999999888887776655
Q ss_pred hccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCC
Q 006657 414 MMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIP 493 (636)
Q Consensus 414 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip 493 (636)
|++|++++|++++..|..+.++++|++|+|++|++++..|
T Consensus 301 ----------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 301 ----------------------------------------LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp ----------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred ----------------------------------------CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 8899999999999989999999999999999999998889
Q ss_pred ccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC-CccCCccccccCCC
Q 006657 494 ENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG-TQLQGFNASCFAGN 557 (636)
Q Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n 557 (636)
..++.+++|++|+|++|++++..|..+..+++|++|++++|++++..+.. ..+..+....+.+|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 99999999999999999999999999999999999999999999744332 23444444455555
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=330.81 Aligned_cols=349 Identities=19% Similarity=0.181 Sum_probs=281.3
Q ss_pred CcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc
Q 006657 74 GRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l 153 (636)
.+++.|+++++ .+.+ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+
T Consensus 42 ~~L~~L~Ls~n------------------~l~~-~~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l 97 (457)
T 3bz5_A 42 ATLTSLDCHNS------------------SITD-MT-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKL 97 (457)
T ss_dssp TTCCEEECCSS------------------CCCC-CT-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCC
T ss_pred CCCCEEEccCC------------------Cccc-Ch-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCC
Confidence 45778888776 5554 34 68889999999999999985 44 78899999999999999
Q ss_pred CCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecC
Q 006657 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 233 (636)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n 233 (636)
++. | ++++++|++|++++|++...+ +.++++|++|++++|.+++.+ ++.+++|++|++++|
T Consensus 98 ~~~-~--~~~l~~L~~L~L~~N~l~~l~-----------~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 98 TNL-D--VTPLTKLTYLNCDTNKLTKLD-----------VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLN 158 (457)
T ss_dssp SCC-C--CTTCTTCCEEECCSSCCSCCC-----------CTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTC
T ss_pred cee-e--cCCCCcCCEEECCCCcCCeec-----------CCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCC
Confidence 864 3 888999999999999886642 678889999999999988862 677899999999999
Q ss_pred CCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc
Q 006657 234 SLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI 313 (636)
Q Consensus 234 ~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 313 (636)
+..+.++ +..+++|+.|++++|++++ ++ +..+++|++|++++|++++. .++.+++|++|++++|++++ +
T Consensus 159 ~~~~~~~---~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-i 227 (457)
T 3bz5_A 159 KKITKLD---VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-I 227 (457)
T ss_dssp SCCCCCC---CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-C
T ss_pred Ccccccc---cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-c
Confidence 7666653 7788999999999999985 44 77888999999999999865 37888999999999999987 5
Q ss_pred chhhhCCCCCCEEEccCcccccccCc---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCC
Q 006657 314 PTWLHKFTRLEYLSLRENRLQGMISS---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSL 390 (636)
Q Consensus 314 p~~l~~l~~L~~L~L~~n~l~~~~p~---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 390 (636)
| +..+++|++|++++|++++..+. .++.++++.| +|+.|++++|.+.+.+| ++.+++|
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccC
Confidence 5 78889999999999998876543 4666666554 45677888898888877 5678999
Q ss_pred CEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCc
Q 006657 391 HILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE 470 (636)
Q Consensus 391 ~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~ 470 (636)
+.|++++|+..+.+|....+++.+. ....+.|++|++++|++++. +
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~--------------------------------l~~~~~L~~L~L~~N~l~~l-~- 334 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELD--------------------------------LSQNPKLVYLYLNNTELTEL-D- 334 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCC--------------------------------CTTCTTCCEEECTTCCCSCC-C-
T ss_pred CEEECCCCcccceeccCCCcceEec--------------------------------hhhcccCCEEECCCCccccc-c-
Confidence 9999999998888886443333221 22346699999999999984 3
Q ss_pred ccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCC
Q 006657 471 EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 471 ~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
++++++|+.|++++|++++ ++.|+.|++++|+++|. ..+..|+.+++++|+++|.+|..
T Consensus 335 -l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred -cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 8999999999999999986 25678889999999986 34567889999999999999974
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=331.10 Aligned_cols=368 Identities=23% Similarity=0.270 Sum_probs=214.6
Q ss_pred CcEEEEEcCCCCCCCCCC------ccccccCCCCCcceeecCccccCCCCC-------------CEEeCCCCCCCCCCCc
Q 006657 74 GRVLELRLGNPFLHDDEP------FWLEDYDDETSKLIGKINPSLLDLKHL-------------VYLDLSNNNFENNQIP 134 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~------~~l~~~~~~~~~l~g~i~~~l~~l~~L-------------~~L~Ls~n~l~~~~ip 134 (636)
.++++++++++.+ +.+| ..++.+++++|.+.|.+|.+++++++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~--lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS--LP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC--CC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc--CC
Confidence 4577778877765 3333 234555666666666666666666653 667777766663 44
Q ss_pred hhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCC
Q 006657 135 VFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD 214 (636)
Q Consensus 135 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~ 214 (636)
.. .++|++|++++|.+++ +|.. .++|++|++++|.+...+. + .++|++|++++|.+++.|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~----------~--~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD----------L--PPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS----------C--CTTCCEEECCSSCCSSCC-
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC----------C--CCCCCEEECcCCCCCCCc-
Confidence 42 3566777777776664 5543 2566777777666554210 0 156777777777766654
Q ss_pred hhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCcccc
Q 006657 215 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ 294 (636)
Q Consensus 215 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 294 (636)
.+..+++|++|++++|++++ +|. . .++|++|++++|.+++ +| .++++++|++|++++|++++ +|...
T Consensus 148 ---~~~~l~~L~~L~l~~N~l~~-lp~-~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 148 ---ELQNSSFLKIIDVDNNSLKK-LPD-L---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp ---CCTTCTTCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred ---ccCCCCCCCEEECCCCcCcc-cCC-C---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 25666777777777777663 442 1 2467777777777764 43 36667777777777777664 44322
Q ss_pred CCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc--cCccceEEEccCCCCccccchHHHHhhhcCceEecC
Q 006657 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM--ISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLR 372 (636)
Q Consensus 295 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~ 372 (636)
++|++|++++|.++ .+| .++.+++|++|++++|++++. .+..++.|++++|.+.+ +|.. .++|+.|+++
T Consensus 215 --~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~ls 285 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPEL----PQSLTFLDVS 285 (454)
T ss_dssp --TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECC
T ss_pred --CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcc----cCcCCEEECc
Confidence 46777777777766 455 366677777777777776652 33466777777776664 4443 3566777777
Q ss_pred CCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccc
Q 006657 373 SNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLK 452 (636)
Q Consensus 373 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (636)
+|++++ +|.. .++|++|++++|++++ ++. ..+
T Consensus 286 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~-------------------------------------------~~~ 317 (454)
T 1jl5_A 286 ENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD-------------------------------------------LPP 317 (454)
T ss_dssp SSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC-------------------------------------------CCT
T ss_pred CCccCc-ccCc---CCcCCEEECcCCcCCc-ccC-------------------------------------------CcC
Confidence 776665 1111 1466677777776663 111 012
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCc--cCchhccCC-------
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSG--RIPQSISSL------- 523 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l------- 523 (636)
.|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 48899999999996 6664 588999999999998 5776 47899999999999998 788888877
Q ss_pred ------CCCCeeeccCCcCcc--cCCC
Q 006657 524 ------TFLSHLNLSDNNLTG--KIPL 542 (636)
Q Consensus 524 ------~~L~~L~ls~N~l~g--~ip~ 542 (636)
++|++|++++|++++ .+|.
T Consensus 390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ---------------------------
T ss_pred ccccccCcCCEEECCCCcCCccccchh
Confidence 889999999999998 7775
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=335.24 Aligned_cols=346 Identities=22% Similarity=0.218 Sum_probs=233.9
Q ss_pred CEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCC
Q 006657 119 VYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSL 198 (636)
Q Consensus 119 ~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~ 198 (636)
+.++.+++.++ .+|..+ .+++++|++++|++++..|..|.++++|++|++++|.+......
T Consensus 14 ~~v~c~~~~l~--~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--------------- 74 (477)
T 2id5_A 14 RAVLCHRKRFV--AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG--------------- 74 (477)
T ss_dssp TEEECCSCCCS--SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------------
T ss_pred CEEEeCCCCcC--cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh---------------
Confidence 45666666666 356544 25677777777777766666677777777777776655432111
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 278 (636)
.+..+++|++|+|++|.++ .+|...+.++++|++|++++|.+.+..+ ..|.++++|++|
T Consensus 75 -------------------~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L 133 (477)
T 2id5_A 75 -------------------AFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSL 133 (477)
T ss_dssp -------------------TTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEE
T ss_pred -------------------hhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEE
Confidence 2333444444444444444 2332345566666666666666653333 566666677777
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchH
Q 006657 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAW 358 (636)
Q Consensus 279 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~ 358 (636)
++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+..+. .
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~------------------~ 195 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY------------------S 195 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT------------------C
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh------------------h
Confidence 7777776666666667777777777777777665556677777777777777766532211 1
Q ss_pred HHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEE
Q 006657 359 IGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILV 438 (636)
Q Consensus 359 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 438 (636)
+ ..+++|+.|++++|.+.+.+|.......+|+.|++++|++++..+..+.++++
T Consensus 196 ~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~------------------------- 249 (477)
T 2id5_A 196 F-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY------------------------- 249 (477)
T ss_dssp S-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT-------------------------
T ss_pred c-ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc-------------------------
Confidence 1 12566777777777666666666666668888888888888443345554443
Q ss_pred EeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCch
Q 006657 439 VMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQ 518 (636)
Q Consensus 439 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~ 518 (636)
|+.|+|++|.+++..+..+.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+.
T Consensus 250 ---------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 250 ---------------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp ---------------CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred ---------------cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 78889999988877778888899999999999999988888899999999999999999987777
Q ss_pred hccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 519 SISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 519 ~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
.|..+++|++|++++|++.|.++..+.+++.....+.++ ..|..|
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred HcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 888889999999999999988876665555544556666 566544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=322.97 Aligned_cols=347 Identities=29% Similarity=0.383 Sum_probs=281.4
Q ss_pred CcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc
Q 006657 74 GRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l 153 (636)
.+++.|++.++ .+. .+| .+..+++|++|++++|.+++ +|. ++++++|++|++++|.+
T Consensus 46 ~~l~~L~l~~~------------------~i~-~l~-~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l 102 (466)
T 1o6v_A 46 DQVTTLQADRL------------------GIK-SID-GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQI 102 (466)
T ss_dssp HTCCEEECCSS------------------CCC-CCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC
T ss_pred ccccEEecCCC------------------CCc-cCc-chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCcc
Confidence 35778888776 332 244 37788999999999999985 454 88999999999999999
Q ss_pred CCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecC
Q 006657 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 233 (636)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n 233 (636)
.+..| ++++++|++|++++|.+...+ .+.++++|++|++++|.+++.+ .+..+++|++|+++ +
T Consensus 103 ~~~~~--~~~l~~L~~L~L~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~ 165 (466)
T 1o6v_A 103 ADITP--LANLTNLTGLTLFNNQITDID----------PLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-N 165 (466)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCCG----------GGTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-E
T ss_pred ccChh--hcCCCCCCEEECCCCCCCCCh----------HHcCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-C
Confidence 86544 889999999999999876642 2778899999999999888765 47788999999997 4
Q ss_pred CCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc
Q 006657 234 SLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI 313 (636)
Q Consensus 234 ~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 313 (636)
.+.+ ++ .+.++++|+.|++++|.+++ + ..+..+++|++|++++|.+++..| ++.+++|++|++++|++++.
T Consensus 166 ~~~~-~~--~~~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 166 QVTD-LK--PLANLTTLERLDISSNKVSD-I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp SCCC-CG--GGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred cccC-ch--hhccCCCCCEEECcCCcCCC-C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-
Confidence 4543 23 48888999999999999874 3 347888999999999999886655 77889999999999988753
Q ss_pred chhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEE
Q 006657 314 PTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHIL 393 (636)
Q Consensus 314 p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 393 (636)
..+..+++|++|++++|++++. +. +. .+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~~~-------------------~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 292 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQISNL-------------------AP-LS-GLTKLTELKLGANQISNISP--LAGLTALTNL 292 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCC-------------------GG-GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred -hhhhcCCCCCEEECCCCccccc-------------------hh-hh-cCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence 3578888999998888887732 22 22 38899999999999986544 8899999999
Q ss_pred EccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccc
Q 006657 394 DLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT 473 (636)
Q Consensus 394 ~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~ 473 (636)
++++|++++..| +..+ ++|+.|++++|++++..| +.
T Consensus 293 ~L~~n~l~~~~~--~~~l----------------------------------------~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNL----------------------------------------KNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp ECCSSCCSCCGG--GGGC----------------------------------------TTCSEEECCSSCCSCCGG--GG
T ss_pred EcCCCcccCchh--hcCC----------------------------------------CCCCEEECcCCcCCCchh--hc
Confidence 999999986543 3333 348999999999997766 78
Q ss_pred cccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 474 NLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 474 ~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
.+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|++|++++|++++ +|.
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 999999999999999975 468999999999999999998877 8899999999999999997 343
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=336.13 Aligned_cols=436 Identities=21% Similarity=0.194 Sum_probs=284.0
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
++|+.+. +++++|||++|.|+.. .|..|.++++|++|+|++|++++..|.+|.++++|++|+|++|++...+..
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~--- 118 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG--- 118 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG---
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH---
Confidence 5666552 4799999999999954 456899999999999999999987788899999999999999998765432
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCC-CCCccccCCCCCcEEEcccCCCCCCCC
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS-LPELPIANFSSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (636)
.+.++++|++|++++|.+++.+.. .++.+++|++|++++|.+++. +| ..+..+++|++|++++|++++. +
T Consensus 119 -----~f~~L~~L~~L~Ls~N~l~~l~~~--~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~ 189 (635)
T 4g8a_A 119 -----AFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSI-Y 189 (635)
T ss_dssp -----GGTTCTTCCEEECTTSCCCCSTTC--CCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEE-C
T ss_pred -----HhcCCCCCCEEECCCCcCCCCChh--hhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccCcccccc-c
Confidence 378999999999999999988542 478899999999999999753 45 6788999999999999999854 4
Q ss_pred hhhhcCCCC----CcEEEccCCcCcccCCccccCCCCCCEEEccCC----------------------------------
Q 006657 266 PSWLFGLSH----LVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN---------------------------------- 307 (636)
Q Consensus 266 ~~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n---------------------------------- 307 (636)
+..+..+.+ ...++++.|.++...+..+ ....++.+++.+|
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 366654433 3357777777654322221 1122223333222
Q ss_pred ------------------------------------------------cCCcccchhhhCCCCCCEEEccCcccccccC-
Q 006657 308 ------------------------------------------------NFISSIPTWLHKFTRLEYLSLRENRLQGMIS- 338 (636)
Q Consensus 308 ------------------------------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p- 338 (636)
.+... ..+....+++.|++.+|.+.+..+
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc
Confidence 22111 112223344555555554433221
Q ss_pred --ccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCc--ccCccccCCCCCCCEEEccCccCccccchhhhhhhhh
Q 006657 339 --SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD--GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414 (636)
Q Consensus 339 --~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 414 (636)
..++.+++..|...+..+. . .+++|+.++++.|.+. +..+..+..+.+|+.++++.|...+ ++..+..++.+
T Consensus 347 ~l~~L~~l~l~~n~~~~~~~~-~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L 422 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAFSE-V--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL 422 (635)
T ss_dssp BCTTCCEEEEESCCSCCBCCC-C--BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC
T ss_pred cchhhhhcccccccCCCCccc-c--cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc
Confidence 1334444444433321111 1 1445555555555543 2233344444455555555554432 22333334443
Q ss_pred ccccCCC-----ccccc-cccceeeceE---EEEeeccccccccccccccEEECcCCcc-CccCCcccccccCCCeEeCC
Q 006657 415 MNQENSM-----ETDKE-YDTFTIELSI---LVVMKGRELAYNTMLKLVRCMDLSGNNL-SGDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 415 ~~~~~~~-----~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~~L~Ls~N~l-~g~~p~~~~~l~~L~~L~Ls 484 (636)
+.+.... ..+.. .......... ...+.+..+.....++.++.|++++|++ .+.+|..+..+++|++|+|+
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 3322100 00000 0000000000 0112333344556678899999999985 44678899999999999999
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCc-c-CCccccccCCCCCCCC
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQ-L-QGFNASCFAGNNLCGA 562 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~-~-~~~~~~~~~~n~lc~~ 562 (636)
+|++++..|..|.++++|++|+|++|++++..|..|..+++|++||+++|++++..|..-. + ..+... .+.++
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L-----~L~~N 577 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL-----NLTQN 577 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE-----ECTTC
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE-----EeeCC
Confidence 9999999999999999999999999999999999999999999999999999988775311 1 222222 45566
Q ss_pred CCCCCCC
Q 006657 563 PLPKNCT 569 (636)
Q Consensus 563 ~~~~~c~ 569 (636)
|+.|+|.
T Consensus 578 p~~C~C~ 584 (635)
T 4g8a_A 578 DFACTCE 584 (635)
T ss_dssp CBCCSGG
T ss_pred CCcccCC
Confidence 7888885
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=319.28 Aligned_cols=333 Identities=20% Similarity=0.234 Sum_probs=238.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCCch-hhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPV-FLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
..++++++|++++|.++. +|. .+..+++|++|++++|.+.+..|..++++++|++|++++|.+...+..
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 111 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-------- 111 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT--------
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH--------
Confidence 346788888888888773 554 367788888888888888766666777777777777777665443211
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 192 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
.+..+++|++|++++|.++ .+|...+.++++|++|++++|.++ .+++..+.+
T Consensus 112 --------------------------~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 163 (390)
T 3o6n_A 112 --------------------------VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA 163 (390)
T ss_dssp --------------------------TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSS
T ss_pred --------------------------HhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-ccChhhccC
Confidence 2344556666666666665 444344677777888888887776 344366777
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
+++|++|++++|++++. .+..+++|++|++++|.+++. ...++|++|++++|.+..
T Consensus 164 l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~---------------- 219 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV---------------- 219 (390)
T ss_dssp CTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE----------------
T ss_pred CCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeee----------------
Confidence 77777777777777643 245567777777777766532 223466677776666652
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
+|... .++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+++
T Consensus 220 ---~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------------------ 273 (390)
T 3o6n_A 220 ---VRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR------------------ 273 (390)
T ss_dssp ---EECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS------------------
T ss_pred ---ccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc------------------
Confidence 23221 46788889999988864 56888899999999999999877877765554
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
|++|++++|++++ +|..+..+++|++|++++|+++ .+|..++.+++|++|++++|+
T Consensus 274 ----------------------L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 274 ----------------------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ----------------------CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred ----------------------CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence 7889999999984 5677788999999999999998 677778889999999999999
Q ss_pred CCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCC
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCG 561 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~ 561 (636)
++.. | +..+++|++|++++|++.|.... ..+..+....+.++ ..|.
T Consensus 330 i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 330 IVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp CCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred ccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence 9854 3 67889999999999999986543 23444444455555 4444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=332.10 Aligned_cols=335 Identities=20% Similarity=0.213 Sum_probs=245.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
.+++++.|++++|.+... .+..++.+++|++|++++|.+++..|..|+.+++|++|++++|.+...+..
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------- 117 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH---------- 117 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT----------
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH----------
Confidence 467888888888888743 334567788888888888888877777777777777777777766543211
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
.++.+++|++|+|++|.++ .+|...+.++++|++|++++|.+++ +++..+.+++
T Consensus 118 ------------------------~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 171 (597)
T 3oja_B 118 ------------------------VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATT 171 (597)
T ss_dssp ------------------------TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCT
T ss_pred ------------------------HHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCC
Confidence 2344555666666666655 3443446777777888888777764 3336677777
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcc
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSG 353 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g 353 (636)
+|++|++++|.+++. + ++.+++|+.|++++|.+++. ...++|++|++++|.+..
T Consensus 172 ~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~------------------ 225 (597)
T 3oja_B 172 SLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV------------------ 225 (597)
T ss_dssp TCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCE------------------
T ss_pred cCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccc------------------
Confidence 777777777777653 2 45567777777777766532 233466777777766652
Q ss_pred ccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceee
Q 006657 354 NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIE 433 (636)
Q Consensus 354 ~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 433 (636)
+|..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+.++++
T Consensus 226 -~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------------------- 279 (597)
T 3oja_B 226 -VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-------------------- 279 (597)
T ss_dssp -EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS--------------------
T ss_pred -ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccC--------------------
Confidence 22221 3578888888888886 367888899999999999999888887766554
Q ss_pred ceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 434 LSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
|+.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|+++
T Consensus 280 --------------------L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 280 --------------------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp --------------------CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred --------------------CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 7889999999985 6777788999999999999999 68888899999999999999998
Q ss_pred ccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 514 GRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
+. | +..+++|++|++++|+++|.++. ..+..+....+.++ ..|+.+
T Consensus 338 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 338 TL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred Cc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 65 3 67788999999999999987654 34556666667777 778753
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=318.92 Aligned_cols=340 Identities=19% Similarity=0.195 Sum_probs=260.6
Q ss_pred eeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccc
Q 006657 105 IGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSF 184 (636)
Q Consensus 105 ~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~ 184 (636)
.+..+.+++++++|++|++++|.+++ +| .++.+++|++|++++|++++. | ++.+++|++|++++|.+...+
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---
T ss_pred CcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---
Confidence 34445578899999999999999995 56 688999999999999999964 4 899999999999999887642
Q ss_pred ccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCC
Q 006657 185 LYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 264 (636)
Q Consensus 185 ~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (636)
++++++|++|++++|.+++.+ +..+++|++|++++|++++ ++ ++++++|++|++++|...+.+
T Consensus 102 --------~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 --------VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp --------CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC
T ss_pred --------cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc
Confidence 678999999999999998863 6789999999999999986 33 788999999999999766665
Q ss_pred ChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEE
Q 006657 265 VPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVF 344 (636)
Q Consensus 265 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L 344 (636)
.+..+++|++|++++|++++ +| ++.+++|++|++++|++++. .++.+++|++|++++|++++
T Consensus 165 ---~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~--------- 226 (457)
T 3bz5_A 165 ---DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE--------- 226 (457)
T ss_dssp ---CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC---------
T ss_pred ---ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc---------
Confidence 37788999999999999986 45 88899999999999999865 37888999999999998884
Q ss_pred EccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCE----------EEccCccCccccchhhhhhhhh
Q 006657 345 DIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHI----------LDLSHNNFSGTLPRCINNLTAM 414 (636)
Q Consensus 345 ~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~----------L~Ls~N~l~~~~p~~l~~l~~L 414 (636)
+| +. .+++|+.|++++|++++..+ +.+++|+. |++++|++.|.+|. +
T Consensus 227 ----------ip--~~-~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~----- 283 (457)
T 3bz5_A 227 ----------ID--VT-PLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--E----- 283 (457)
T ss_dssp ----------CC--CT-TCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--T-----
T ss_pred ----------cC--cc-ccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCcccc--c-----
Confidence 23 11 25666666666666665432 33444444 44555554444441 2
Q ss_pred ccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCc--------ccccccCCCeEeCCCc
Q 006657 415 MNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE--------EMTNLLALQSLNLSHN 486 (636)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~--------~~~~l~~L~~L~Ls~N 486 (636)
.++.|+.|++++|...+.+|. .++++++|++|++++|
T Consensus 284 -----------------------------------~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 284 -----------------------------------GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp -----------------------------------TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred -----------------------------------ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 234477788888877666654 2556678899999999
Q ss_pred cCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCCCCCC
Q 006657 487 FLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCG 561 (636)
Q Consensus 487 ~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lc~ 561 (636)
++++. + ++.+++|+.|++++|++++ ++.|..|++++|.++|. + .+..+....+..|.+.|
T Consensus 329 ~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-~---~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 329 ELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-G---QTITMPKETLTNNSLTI 388 (457)
T ss_dssp CCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-E---EEEECCCBCCBTTBEEE
T ss_pred ccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-c---eeeecCccccccCcEEE
Confidence 99873 3 8888999999999999886 24577788899999886 2 33344444555555544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=320.00 Aligned_cols=352 Identities=22% Similarity=0.216 Sum_probs=202.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCC-------------CeEeccCCCCCCc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNL-------------QYLDLSIDTHNPI 180 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~~~~~ 180 (636)
+.++|++|++++|.+ + .+|..++++++|++|++++|.+.|.+|..++++++| ++|++++|.+.+.
T Consensus 9 ~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 345666666666666 2 366666666666666666666666666666665543 6666666665543
Q ss_pred ccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCC
Q 006657 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 260 (636)
Q Consensus 181 ~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l 260 (636)
+. -.++|++|++++|.+++.|. .+++|++|++++|++++ ++. + .++|++|++++|++
T Consensus 87 p~------------~~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~-l~~--~--~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 87 PE------------LPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKA-LSD--L--PPLLEYLGVSNNQL 143 (454)
T ss_dssp CS------------CCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSC-CCS--C--CTTCCEEECCSSCC
T ss_pred CC------------CcCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCc-ccC--C--CCCCCEEECcCCCC
Confidence 21 12456666666666666543 13566666666666653 321 1 14666666666666
Q ss_pred CCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc--ccC
Q 006657 261 DNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG--MIS 338 (636)
Q Consensus 261 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p 338 (636)
++ +| .++++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++++++|++|++++|++++ ..+
T Consensus 144 ~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~ 214 (454)
T 1jl5_A 144 EK-LP--ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP 214 (454)
T ss_dssp SS-CC--CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred CC-Cc--ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc
Confidence 53 44 36666666666666666664 44332 466666666666664 34 46666666666666666665 233
Q ss_pred ccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhcccc
Q 006657 339 SVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQE 418 (636)
Q Consensus 339 ~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~ 418 (636)
..|+.|++++|.+. .+|. +. .+++|++|++++|++++ +|.. .++|++|++++|++++ +|....+++.+ +
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~~~L~~L---~ 283 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELPQSLTFL---D 283 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCCTTCCEE---E
T ss_pred CcccEEECcCCcCC-cccc-cC-CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcccCcCCEE---E
Confidence 46666666666666 5663 33 36667777777776664 3432 3566777777776664 44433222221 1
Q ss_pred CCCccccccccceeeceEEEEeeccccccc-cccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCcccc
Q 006657 419 NSMETDKEYDTFTIELSILVVMKGRELAYN-TMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVG 497 (636)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 497 (636)
.+. ...... ...+.|++|++++|++++ ++. -.++|++|++++|++++ +|..
T Consensus 284 ls~---------------------N~l~~l~~~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~-- 335 (454)
T 1jl5_A 284 VSE---------------------NIFSGLSELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL-- 335 (454)
T ss_dssp CCS---------------------SCCSEESCCCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC--
T ss_pred CcC---------------------CccCcccCcCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc--
Confidence 100 000000 012458999999999985 332 12589999999999996 6764
Q ss_pred CCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcc--cCCCC
Q 006657 498 AMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG--KIPLG 543 (636)
Q Consensus 498 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~~ 543 (636)
+++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..
T Consensus 336 -~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 336 -PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp -CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred -CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 589999999999999 4676 47899999999999999 77753
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=311.94 Aligned_cols=349 Identities=26% Similarity=0.348 Sum_probs=289.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
..++++++|+++++.+. .+|. +..+++|++|++++|.+++. |. ++++++|++|++++|.+...+ .
T Consensus 43 ~~l~~l~~L~l~~~~i~--~l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~----------~ 107 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK--SIDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADIT----------P 107 (466)
T ss_dssp HHHHTCCEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG----------G
T ss_pred hHhccccEEecCCCCCc--cCcc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccCh----------h
Confidence 34679999999999998 3664 78899999999999999965 44 999999999999999886642 1
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+.++++|++|++++|.+++.+. +..+++|++|++++|.+.+ ++ .+.++++|+.|+++ |.+.+ + ..+.++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~-~~~~~-~--~~~~~l 176 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFG-NQVTD-L--KPLANL 176 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEE-ESCCC-C--GGGTTC
T ss_pred hcCCCCCCEEECCCCCCCCChH----HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecC-CcccC-c--hhhccC
Confidence 7889999999999999988753 7889999999999999985 44 48899999999997 55543 3 338899
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCc
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~ 352 (636)
++|++|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|++++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----------------- 235 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD----------------- 235 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-----------------
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-----------------
Confidence 9999999999999854 358899999999999999987665 7788999999999998872
Q ss_pred cccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcccccccccee
Q 006657 353 GNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTI 432 (636)
Q Consensus 353 g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~ 432 (636)
++ .+. .+++|+.|++++|.+++..| +..+++|+.|++++|++++..+ +..+
T Consensus 236 --~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l--------------------- 286 (466)
T 1o6v_A 236 --IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL--------------------- 286 (466)
T ss_dssp --CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC---------------------
T ss_pred --ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC---------------------
Confidence 22 222 38899999999999997655 8899999999999999986443 4433
Q ss_pred eceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCC
Q 006657 433 ELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512 (636)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 512 (636)
+.|+.|++++|++++..| ++.+++|++|++++|++++..| +..+++|++|++++|++
T Consensus 287 -------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 287 -------------------TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp -------------------TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred -------------------CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 348999999999997544 8899999999999999998766 78999999999999999
Q ss_pred CccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCCCCCCCC
Q 006657 513 SGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNLCGAP 563 (636)
Q Consensus 513 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~lc~~~ 563 (636)
++. ..+..+++|++|++++|++++..| ...+..+....+.+|.+.+.|
T Consensus 344 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 344 SDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred CCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCc
Confidence 975 468999999999999999999887 445556666666666444444
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-35 Score=315.98 Aligned_cols=271 Identities=20% Similarity=0.218 Sum_probs=199.3
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
.+|..+. +++++|+|++|.+++. .|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+...+...
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 99 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV-- 99 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS--
T ss_pred cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc--
Confidence 3454442 5889999999999865 5778899999999999999999888999999999999999999887654322
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (636)
+.++++|++|++++|.+++.+. ..+..+++|++|++++|.+.+..+ ..+.++++|+.|++++|.++ .+++
T Consensus 100 ------~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~ 169 (477)
T 2id5_A 100 ------FTGLSNLTKLDISENKIVILLD--YMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLT-SIPT 169 (477)
T ss_dssp ------STTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCS-SCCH
T ss_pred ------ccCCCCCCEEECCCCccccCCh--hHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCc-ccCh
Confidence 6778888888888888876632 256778888888888888876555 67888888888888888887 4565
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEc
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDI 346 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l 346 (636)
..+.++++|++|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~------------ 237 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT------------ 237 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC------------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc------------
Confidence 77888888888888888888777777888888888888888777777666555567777777776665
Q ss_pred cCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhh
Q 006657 347 GENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNL 411 (636)
Q Consensus 347 ~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 411 (636)
.+|......+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+.++
T Consensus 238 -------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 238 -------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp -------SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred -------ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 4454333345666666666666665555555556666666666665555444444433
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=296.49 Aligned_cols=257 Identities=34% Similarity=0.550 Sum_probs=202.6
Q ss_pred CCcEEEcccCCCCC--CCChhhhcCCCCCcEEEccC-CcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCE
Q 006657 249 SLYTLDLSYNEFDN--TLVPSWLFGLSHLVFLDLGF-NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEY 325 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~--~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 325 (636)
+++.|++++|.+++ .+| ..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++++.+|..+.++++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 55666666666665 555 5666666666666663 6666666666666777777777777766666666666666666
Q ss_pred EEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCC-CCCEEEccCccCcccc
Q 006657 326 LSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLT-SLHILDLSHNNFSGTL 404 (636)
Q Consensus 326 L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~ 404 (636)
|++++|++++ .+|..+.. +++|++|++++|++++.+|..+..++ +|++|++++|++++.+
T Consensus 130 L~Ls~N~l~~------------------~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 130 LDFSYNALSG------------------TLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp EECCSSEEES------------------CCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred EeCCCCccCC------------------cCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 6666666553 34444443 67777777777777777888888887 8999999999999888
Q ss_pred chhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCC
Q 006657 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 405 p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls 484 (636)
|..+..++ |++|++++|.+++.+|..+..+++|++|+++
T Consensus 191 ~~~~~~l~-----------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 191 PPTFANLN-----------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp CGGGGGCC-----------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred ChHHhCCc-----------------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 88776442 7889999999999999999999999999999
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
+|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+| .+||.|
T Consensus 230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 9999977776 88899999999999999999999999999999999999999999999888888888899999 799988
Q ss_pred CCCCC
Q 006657 564 LPKNC 568 (636)
Q Consensus 564 ~~~~c 568 (636)
+. .|
T Consensus 309 ~~-~C 312 (313)
T 1ogq_A 309 LP-AC 312 (313)
T ss_dssp SS-CC
T ss_pred CC-CC
Confidence 76 46
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=288.75 Aligned_cols=307 Identities=23% Similarity=0.354 Sum_probs=193.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
+..+++|++|++++|.+.. +|. +..+++|++|++++|.+++ +|. +.++++|++|++++|.+... +
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~----------~ 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI----------S 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC----------G
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc----------h
Confidence 4567889999999988873 553 7778899999999988884 444 88888888888888876553 1
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 192 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
.+.++++|++|++++|.+++.+. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+ ++ .+..
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~-~~--~~~~ 175 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKD-VT--PIAN 175 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCC-CG--GGGG
T ss_pred HHcCCCcCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCC-ch--hhcc
Confidence 26677777777777777766542 5566666666666665444433 25566666666666666542 22 1455
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|+
T Consensus 176 l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~------------------- 232 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK------------------- 232 (347)
T ss_dssp CTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-------------------
T ss_pred CCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc-------------------
Confidence 55566666655555532 22 4555555555555555553322 4445555555555544
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
+++. +. +..+++|++|++++|++++. + .+..
T Consensus 233 ------------------------l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~--------------------- 263 (347)
T 4fmz_A 233 ------------------------ITDL-SP-LANLSQLTWLEIGTNQISDI-N-AVKD--------------------- 263 (347)
T ss_dssp ------------------------CCCC-GG-GTTCTTCCEEECCSSCCCCC-G-GGTT---------------------
T ss_pred ------------------------cCCC-cc-hhcCCCCCEEECCCCccCCC-h-hHhc---------------------
Confidence 4422 22 55566666666666666532 1 1222
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
+++|++|++++|++++. +.+..+++|++|++++|++++..|..++.+++|++|++++|+
T Consensus 264 -------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 264 -------------------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred -------------------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 22366677777777643 346677777777777777777777777777777777777777
Q ss_pred CCccCchhccCCCCCCeeeccCCcCc
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~ 537 (636)
+++..| +..+++|++|++++|+++
T Consensus 323 l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccccC--hhhhhccceeehhhhccc
Confidence 776555 667777777777777764
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=285.61 Aligned_cols=304 Identities=24% Similarity=0.333 Sum_probs=202.9
Q ss_pred hcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChh
Q 006657 137 LGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWF 216 (636)
Q Consensus 137 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~ 216 (636)
+..+++|++|++++|.+. .+| .+..+++|++|++++|.+...+ .+.++++|++|++++|.++..
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~----------~~~~l~~L~~L~L~~n~i~~~---- 103 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDIS----------PLSNLVKLTNLYIGTNKITDI---- 103 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCCCCC----
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccch----------hhhcCCcCCEEEccCCcccCc----
Confidence 345667777777777665 333 3566666666666666554321 034444555555554444433
Q ss_pred hhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCC
Q 006657 217 LVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296 (636)
Q Consensus 217 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 296 (636)
+ .+.++++|++|++++|.++ .++ . +..+++|++|++++|.....++ .+..+
T Consensus 104 -----------------------~--~~~~l~~L~~L~l~~n~i~-~~~-~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l 154 (347)
T 4fmz_A 104 -----------------------S--ALQNLTNLRELYLNEDNIS-DIS-P-LANLTKMYSLNLGANHNLSDLS-PLSNM 154 (347)
T ss_dssp -----------------------G--GGTTCTTCSEEECTTSCCC-CCG-G-GTTCTTCCEEECTTCTTCCCCG-GGTTC
T ss_pred -----------------------h--HHcCCCcCCEEECcCCccc-Cch-h-hccCCceeEEECCCCCCccccc-chhhC
Confidence 2 3555555555555555554 222 1 5556666666666664443332 35666
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +. .+++|+.+++++|.+
T Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-------------------~~~~-~~-~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-------------------DISP-LA-SLTSLHYFTAYVNQI 211 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-------------------CCGG-GG-GCTTCCEEECCSSCC
T ss_pred CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-------------------cccc-cc-CCCccceeecccCCC
Confidence 666666666666654333 556666666666666655 2222 22 366677777777777
Q ss_pred cccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccE
Q 006657 377 DGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRC 456 (636)
Q Consensus 377 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 456 (636)
++..+ +..+++|++|++++|++++..+ +..+ ++|++
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l----------------------------------------~~L~~ 247 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITDLSP--LANL----------------------------------------SQLTW 247 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC----------------------------------------TTCCE
T ss_pred CCCch--hhcCCcCCEEEccCCccCCCcc--hhcC----------------------------------------CCCCE
Confidence 65433 7788999999999999985433 4333 34899
Q ss_pred EECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcC
Q 006657 457 MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 457 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 536 (636)
|++++|.+++. +.+..+++|++|++++|++++. ..+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 248 L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 248 LEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 99999999853 5689999999999999999964 4589999999999999999999999999999999999999999
Q ss_pred cccCCCCCccCCccccccCCC
Q 006657 537 TGKIPLGTQLQGFNASCFAGN 557 (636)
Q Consensus 537 ~g~ip~~~~~~~~~~~~~~~n 557 (636)
++..| ...+..+....+.+|
T Consensus 324 ~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 324 TDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp CCCGG-GGGCTTCSEESSSCC
T ss_pred ccccC-hhhhhccceeehhhh
Confidence 98766 344555555555555
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=290.34 Aligned_cols=279 Identities=19% Similarity=0.192 Sum_probs=237.7
Q ss_pred CCCCCHHHHHHHHHHhhcC-CCCCCCCCCCC-----CCCCcccccEEeCC--------CCCcEEEEEcCCCCCCCCCCcc
Q 006657 28 YIGCIQSERKALLRFKQDL-KDPANRLASWS-----DGNCCTWAGVVCND--------STGRVLELRLGNPFLHDDEPFW 93 (636)
Q Consensus 28 ~~~~~~~~~~~Ll~~k~~~-~~~~~~l~~W~-----~~~~c~w~gv~C~~--------~~~~v~~L~L~~~~l~~~~~~~ 93 (636)
..++..+|+.||++||+++ .|+.+.+.+|. ..++|.|.|+.|+. ...+|+.|+|+++
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n--------- 91 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV--------- 91 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS---------
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC---------
Confidence 3456788999999999998 57767778893 56899999999952 3468999999886
Q ss_pred ccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEecc
Q 006657 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 173 (636)
.+. .+|+.++++++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|+++
T Consensus 92 ---------~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 92 ---------PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp ---------CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ---------Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 554 78999999999999999999999 59999999999999999999999 889999999999999999
Q ss_pred CCCCCCcccccc-cccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcE
Q 006657 174 IDTHNPISFSFL-YLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT 252 (636)
Q Consensus 174 ~n~~~~~~~~~~-~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 252 (636)
+|.+.......+ .......+.++++|++|++++|.++..|. .+..+++|++|++++|.+++ +| ..+..+++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---~l~~l~~L~~L~L~~N~l~~-l~-~~l~~l~~L~~ 233 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA---SIANLQNLKSLKIRNSPLSA-LG-PAIHHLPKLEE 233 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG---GGGGCTTCCEEEEESSCCCC-CC-GGGGGCTTCCE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH---hhcCCCCCCEEEccCCCCCc-Cc-hhhccCCCCCE
Confidence 976544211111 00111225569999999999999996664 57889999999999999984 66 46899999999
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 253 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
|++++|.+.+.+| ..+.++++|++|++++|.+.+.+|..++++++|++|++++|++.+.+|..++++++|+.+++..+.
T Consensus 234 L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999998887 889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 006657 333 LQ 334 (636)
Q Consensus 333 l~ 334 (636)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 65
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=285.39 Aligned_cols=331 Identities=17% Similarity=0.205 Sum_probs=223.6
Q ss_pred ccccCCCCCcceeecCc-cccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEec
Q 006657 94 LEDYDDETSKLIGKINP-SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDL 172 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~-~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 172 (636)
++.++++++.+.. +|+ .+..+++|++|++++|.+++. .+..++.+++|++|++++|.+++..|..++++++|++|++
T Consensus 47 l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEecCCchhh-CChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 4556666666554 555 468899999999999999864 5568999999999999999999888888999999999999
Q ss_pred cCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcE
Q 006657 173 SIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT 252 (636)
Q Consensus 173 s~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 252 (636)
++|.+...+... +.++++|++|++++|.+++.+ + ..+.++++|++
T Consensus 125 ~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~--------------------------~-~~~~~l~~L~~ 169 (390)
T 3o6n_A 125 ERNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERIE--------------------------D-DTFQATTSLQN 169 (390)
T ss_dssp CSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBCC--------------------------T-TTTSSCTTCCE
T ss_pred CCCccCcCCHHH--------hcCCCCCcEEECCCCccCccC--------------------------h-hhccCCCCCCE
Confidence 999887543221 345556666666655555442 2 33444555555
Q ss_pred EEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 253 LDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 253 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
|++++|.+++ ++ +..+++|++|++++|.+++. ...++|++|++++|.+... |.. ..++|++|++++|+
T Consensus 170 L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~ 237 (390)
T 3o6n_A 170 LQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNN 237 (390)
T ss_dssp EECCSSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSC
T ss_pred EECCCCcCCc-cc---cccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCC
Confidence 5555555542 11 33445555555555555421 2234566666666665532 221 23456666666555
Q ss_pred cccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhh
Q 006657 333 LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLT 412 (636)
Q Consensus 333 l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 412 (636)
+++ . .++. .+++|+.|++++|.+++..|..+..+++|++|++++|++++ +|..+..
T Consensus 238 l~~-------------------~-~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-- 293 (390)
T 3o6n_A 238 LTD-------------------T-AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP-- 293 (390)
T ss_dssp CCC-------------------C-GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC--
T ss_pred Ccc-------------------c-HHHc-CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC--
Confidence 542 1 1222 26677777777777777777888888999999999998874 3433322
Q ss_pred hhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCC
Q 006657 413 AMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI 492 (636)
Q Consensus 413 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~i 492 (636)
+++|++|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus 294 --------------------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~- 333 (390)
T 3o6n_A 294 --------------------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL- 333 (390)
T ss_dssp --------------------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred --------------------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-
Confidence 344889999999998 6777888999999999999999854
Q ss_pred CccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCC
Q 006657 493 PENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 493 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 541 (636)
| +..+++|+.|++++|++.+.-... -+..+....+..+...|..|
T Consensus 334 ~--~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 334 K--LSTHHTLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp C--CCTTCCCSEEECCSSCEEHHHHHH--HTTTCCTTTBCCCCSCCCTT
T ss_pred C--chhhccCCEEEcCCCCccchhHHH--HHHHHHhhcccccCceeccc
Confidence 4 678899999999999998643322 23445555556666555443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=296.82 Aligned_cols=310 Identities=18% Similarity=0.204 Sum_probs=216.8
Q ss_pred ccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEecc
Q 006657 94 LEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 173 (636)
++.++++++.+.+..+..+..+++|++|+|++|.+++. .|..++.+++|++|++++|.+++..|..|+++++|++|+++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 45556666676554444578899999999999999965 66789999999999999999998888889999999999999
Q ss_pred CCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEE
Q 006657 174 IDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL 253 (636)
Q Consensus 174 ~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 253 (636)
+|.+...+... +.++++|++|++++|.+++. .| ..+.++++|+.|
T Consensus 132 ~n~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~~--------------------------~~-~~~~~l~~L~~L 176 (597)
T 3oja_B 132 RNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERI--------------------------ED-DTFQATTSLQNL 176 (597)
T ss_dssp SSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBC--------------------------CT-TTTTTCTTCCEE
T ss_pred CCCCCCCCHHH--------hccCCCCCEEEeeCCcCCCC--------------------------Ch-hhhhcCCcCcEE
Confidence 99887643221 34455555555555544443 33 345555555556
Q ss_pred EcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccc
Q 006657 254 DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333 (636)
Q Consensus 254 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 333 (636)
++++|.+++ ++ +..+++|+.|++++|.+++ +...++|++|++++|.+....+ .+ .++|+.|++++|.+
T Consensus 177 ~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l 244 (597)
T 3oja_B 177 QLSSNRLTH-VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNL 244 (597)
T ss_dssp ECTTSCCSB-CC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCC
T ss_pred ECcCCCCCC-cC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCC
Confidence 665555542 22 3345556666666665553 2233456666666666653222 11 24566666665555
Q ss_pred ccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhh
Q 006657 334 QGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTA 413 (636)
Q Consensus 334 ~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 413 (636)
++ +.++. .+++|+.|++++|.+++..|..++.+++|+.|+|++|++++ +|..+..
T Consensus 245 ~~--------------------~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--- 299 (597)
T 3oja_B 245 TD--------------------TAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP--- 299 (597)
T ss_dssp CC--------------------CGGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC---
T ss_pred CC--------------------Chhhc-cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc---
Confidence 42 12233 26777777777777777778888888999999999998885 4443322
Q ss_pred hccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCC
Q 006657 414 MMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIP 493 (636)
Q Consensus 414 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip 493 (636)
++.|+.|+|++|.++ .+|..+..+++|++|+|++|.+++. |
T Consensus 300 -------------------------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~ 340 (597)
T 3oja_B 300 -------------------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K 340 (597)
T ss_dssp -------------------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred -------------------------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C
Confidence 344888999999998 6788888999999999999999854 3
Q ss_pred ccccCCCCCCEEeCCCCCCCccCc
Q 006657 494 ENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+..+++|+.|++++|.+.+..+
T Consensus 341 --~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 341 --LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp --CCTTCCCSEEECCSSCEEHHHH
T ss_pred --hhhcCCCCEEEeeCCCCCChhH
Confidence 6778899999999999987543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=267.38 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=129.3
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCC--cccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFI--SSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
+|++|++++|.+++..+..+.++++|++|++++|.+. +..+..+.++++|++|++++|.++
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~----------------- 184 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT----------------- 184 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-----------------
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-----------------
Confidence 4444444444444333333444444444444444443 233445555555555555555554
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
.+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++
T Consensus 185 --~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~------------------ 241 (330)
T 1xku_A 185 --TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH------------------ 241 (330)
T ss_dssp --SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT------------------
T ss_pred --cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC------------------
Confidence 222221 245666677777776666777888888888888888888666655655443
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccC------CCCCCEE
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA------MRSLESI 505 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~------l~~L~~L 505 (636)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. ..+++.|
T Consensus 242 ----------------------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 242 ----------------------LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp ----------------------CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred ----------------------CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccce
Confidence 788888888888 78888888889999999999988766666643 3678899
Q ss_pred eCCCCCCCc--cCchhccCCCCCCeeeccCCc
Q 006657 506 DFSGNLLSG--RIPQSISSLTFLSHLNLSDNN 535 (636)
Q Consensus 506 ~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 535 (636)
++++|.+.. ..|..+..+..++.+++++|+
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EeecCcccccccCccccccccceeEEEecccC
Confidence 999998863 566788888899999998885
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-34 Score=313.98 Aligned_cols=279 Identities=22% Similarity=0.174 Sum_probs=175.0
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCC----CCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTG----MIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
++|++||+++|.++.......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.......
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~------- 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC------- 75 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH-------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH-------
Confidence 4678888888888754344447778888888888888774 34666777888888888888664321111
Q ss_pred cccCCC----CCcEEEccCCCCCCCC--ChhhhhCCCCCCCEEEeecCCCCCCCCC----ccccCCCCCcEEEcccCCCC
Q 006657 192 WLSGLS----LLKHLDLTGVDLSTAS--DWFLVTNMLPSLQVLKLSACSLHNSLPE----LPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 192 ~l~~l~----~L~~L~Ls~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~~l~~L~~L~Ls~n~l~ 261 (636)
....++ +|++|++++|.++... .++..+..+++|++|++++|.+++..+. ......++|++|++++|.++
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 012233 6888888888877542 3345677888888888888887642221 01223567888888888887
Q ss_pred CCCC---hhhhcCCCCCcEEEccCCcCcccCCcccc-----CCCCCCEEEccCCcCCcc----cchhhhCCCCCCEEEcc
Q 006657 262 NTLV---PSWLFGLSHLVFLDLGFNSFGGPIPDGLQ-----NLTSLEHLDLRSNNFISS----IPTWLHKFTRLEYLSLR 329 (636)
Q Consensus 262 ~~~~---~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~ 329 (636)
+... +..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 5321 25566778888888888887754444443 356888888888888764 46777788888888888
Q ss_pred Cccccccc-----------CccceEEEccCCCCccc----cchHHHHhhhcCceEecCCCcCcccCccccC-----CCCC
Q 006657 330 ENRLQGMI-----------SSVLVVFDIGENGFSGN----IPAWIGEKLLRNLILRLRSNKFDGQIPAELC-----RLTS 389 (636)
Q Consensus 330 ~n~l~~~~-----------p~~L~~L~l~~n~l~g~----ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~ 389 (636)
+|++++.. ...|+.|++++|.+++. ++..+.. +++|++|++++|.+++..+..+. ..++
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 88876431 12445555555544432 3333332 45555555555555432222221 1135
Q ss_pred CCEEEccCccCcc
Q 006657 390 LHILDLSHNNFSG 402 (636)
Q Consensus 390 L~~L~Ls~N~l~~ 402 (636)
|++|++++|.+++
T Consensus 315 L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 315 LESLWVKSCSFTA 327 (461)
T ss_dssp CCEEECTTSCCBG
T ss_pred ceeeEcCCCCCch
Confidence 5555555555543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=269.90 Aligned_cols=199 Identities=21% Similarity=0.240 Sum_probs=132.5
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCC--cccchhhhCCCCCCEEEccCcccccccCccceEEEccCCC
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFI--SSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENG 350 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~ 350 (636)
++|++|++++|++++..+..+.++++|++|++++|.++ +..|..+..+ +|++|++++|+++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~---------------- 185 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT---------------- 185 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS----------------
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC----------------
Confidence 34444444444444333333444555555555555543 2334444444 5555555555554
Q ss_pred CccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccc
Q 006657 351 FSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTF 430 (636)
Q Consensus 351 l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~ 430 (636)
.+|..+ .++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++
T Consensus 186 ---~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------------- 242 (332)
T 2ft3_A 186 ---GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT----------------- 242 (332)
T ss_dssp ---SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-----------------
T ss_pred ---ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-----------------
Confidence 222222 246667777777777666677888888888888888888766666655444
Q ss_pred eeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccC------CCCCCE
Q 006657 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGA------MRSLES 504 (636)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~------l~~L~~ 504 (636)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. ..+|+.
T Consensus 243 -----------------------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 243 -----------------------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp -----------------------CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred -----------------------CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence 788889999888 78888888999999999999998766666654 367899
Q ss_pred EeCCCCCCC--ccCchhccCCCCCCeeeccCCc
Q 006657 505 IDFSGNLLS--GRIPQSISSLTFLSHLNLSDNN 535 (636)
Q Consensus 505 L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 535 (636)
|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999987 6778888899999999999885
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=265.21 Aligned_cols=243 Identities=22% Similarity=0.292 Sum_probs=152.4
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGL 196 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l 196 (636)
++++++++++.++ .+|..+ .++|++|++++|.+.+..|..+.++++|++|++++|.+..... ..+.++
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE--------KAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------GGSTTC
T ss_pred cCCEEECCCCCcc--ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------hHhhCc
Confidence 6899999999988 577766 3789999999999987777889999999999999988765421 226777
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCC-CCChhhhcCCCCC
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN-TLVPSWLFGLSHL 275 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L 275 (636)
++|++|++++|.++..+. .+ .++|++|++++|.+++ ++...+.++++|+.|++++|.++. .+.+..+..+ +|
T Consensus 102 ~~L~~L~L~~n~l~~l~~---~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPP---NL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCCEEECCSSCCCSCCS---SC--CTTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred CCCCEEECCCCcCCccCc---cc--cccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 888888888887776543 11 1667777777777763 343456667777777777776642 1222555555 66
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~i 355 (636)
++|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++. .
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~------------------~ 233 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI------------------E 233 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC------------------C
T ss_pred CEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC------------------C
Confidence 666666666663 444433 5666666666666655555566666666666555555421 1
Q ss_pred chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCc
Q 006657 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFS 401 (636)
Q Consensus 356 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 401 (636)
+..+. .+++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 234 ~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 234 NGSLS-FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp TTGGG-GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred hhHhh-CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 11222 2444555555555444 34444444444555555444444
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=258.86 Aligned_cols=245 Identities=22% Similarity=0.272 Sum_probs=155.0
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGL 196 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l 196 (636)
++++++++++.++ .+|..+. ++|++|++++|++++..+..++++++|++|++++|.+...... .+.++
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG--------AFAPL 99 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT--------TTTTC
T ss_pred CCeEEEecCCCcc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH--------HhcCC
Confidence 5778888888877 4666543 6788888888888876666788888888888888877654211 25667
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCC-CCChhhhcCCCCC
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN-TLVPSWLFGLSHL 275 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L 275 (636)
++|++|++++|.++..+. .+ .++|++|++++|.+++..+ ..+.++++|+.|++++|.+.. .+.+..+.++++|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~---~~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPE---KM--PKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTCCEEECCSSCCSBCCS---SC--CTTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCCCEEECCCCcCCccCh---hh--cccccEEECCCCcccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 777777777777665543 11 2567777777777764333 456677777777777777642 1233566667777
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~i 355 (636)
++|++++|.++ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..
T Consensus 174 ~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------------ 232 (330)
T 1xku_A 174 SYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------------------ 232 (330)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------------------
T ss_pred CEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC------------------
Confidence 77777777766 3444433 66777777777776666666666666666666666655221
Q ss_pred chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc
Q 006657 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 356 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 402 (636)
+..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 233 ~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 233 NGSLA-NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTTGG-GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred hhhcc-CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 11222 2455555566555555 455555555555555555555553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-33 Score=302.18 Aligned_cols=359 Identities=18% Similarity=0.121 Sum_probs=269.7
Q ss_pred CCCCCEEEccCCccCCCCCcc-CcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCC--CChh
Q 006657 140 MGSLRHIDLSRAELTGMIPHQ-LGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTA--SDWF 216 (636)
Q Consensus 140 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~--~~~~ 216 (636)
.++|++|++++|+++...... +..+++|++|++++|.+.......+ ...+..+++|++|++++|.+++. ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l----~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI----SSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHH----HHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHH----HHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 367899999999987554333 6788999999999998754311111 12367889999999999988754 2222
Q ss_pred hhhCCCC-CCCEEEeecCCCCC----CCCCccccCCCCCcEEEcccCCCCCCCChhhh-----cCCCCCcEEEccCCcCc
Q 006657 217 LVTNMLP-SLQVLKLSACSLHN----SLPELPIANFSSLYTLDLSYNEFDNTLVPSWL-----FGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 217 ~~~~~l~-~L~~L~L~~n~l~~----~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-----~~l~~L~~L~L~~n~l~ 286 (636)
..+.... +|++|++++|.++. .++ ..+..+++|++|++++|.+++..+ ..+ ...++|++|++++|+++
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHH-HHHHHHHhcCCCcceEEECCCCCCC
Confidence 2222222 79999999999874 345 568889999999999999864322 222 23568999999999998
Q ss_pred cc----CCccccCCCCCCEEEccCCcCCcccchhhh-----CCCCCCEEEccCcccccc----cC------ccceEEEcc
Q 006657 287 GP----IPDGLQNLTSLEHLDLRSNNFISSIPTWLH-----KFTRLEYLSLRENRLQGM----IS------SVLVVFDIG 347 (636)
Q Consensus 287 ~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p------~~L~~L~l~ 347 (636)
+. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++ ..|+.|+++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 64 355667789999999999998765555444 367999999999998864 22 478999999
Q ss_pred CCCCccccchHHHH----hhhcCceEecCCCcCccc----CccccCCCCCCCEEEccCccCccccchhhhhhhhhccccC
Q 006657 348 ENGFSGNIPAWIGE----KLLRNLILRLRSNKFDGQ----IPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419 (636)
Q Consensus 348 ~n~l~g~ip~~~~~----~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~ 419 (636)
+|.+.+.....+.. .+++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+...-.
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~------ 309 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL------ 309 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT------
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc------
Confidence 99887643332222 367899999999988864 6777777889999999999887655554443210
Q ss_pred CCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCcc----CCcccccccCCCeEeCCCccCcCCCCcc
Q 006657 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGKIPEN 495 (636)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~ 495 (636)
...+.|++|++++|.+++. ++..+..+++|++|++++|++++..+..
T Consensus 310 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 310 -----------------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp -----------------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred -----------------------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 0123589999999999876 5667788899999999999998765554
Q ss_pred ccC-----CCCCCEEeCCCCCCCc----cCchhccCCCCCCeeeccCCcCccc
Q 006657 496 VGA-----MRSLESIDFSGNLLSG----RIPQSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 496 ~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 543 6799999999999996 7888899999999999999998753
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=261.16 Aligned_cols=270 Identities=21% Similarity=0.242 Sum_probs=180.6
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
.+|..+. ++|++|++++|.+++. .+..+.++++|++|++++|++++..|..++++++|++|++++|.+...+..
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 118 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS--- 118 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH---
T ss_pred ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh---
Confidence 4566554 5899999999999853 444789999999999999999988888899999999999999987654321
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (636)
.+.++++|++|++++|.++..+. ...+..+++|++|++++|...+.++...+.++++|++|++++|.+++..+
T Consensus 119 -----~~~~l~~L~~L~L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 191 (353)
T 2z80_A 119 -----WFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP- 191 (353)
T ss_dssp -----HHTTCTTCSEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-
T ss_pred -----HhCCCccCCEEECCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-
Confidence 25667777777777777776542 01345666777777776642223332456666666666666666654333
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhh---CCCCCCEEEccCcccccccCccceE
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLH---KFTRLEYLSLRENRLQGMISSVLVV 343 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~L~~ 343 (636)
..+..+++|++|++++|+++...+..+..+++|++|++++|.+++..+..+. ..+.++.++++++.+++
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~-------- 263 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-------- 263 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH--------
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC--------
Confidence 5666666666666666666432222233456666666666666554333222 23344444444443331
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccc-cCCCCCCCEEEccCccCccccc
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAE-LCRLTSLHILDLSHNNFSGTLP 405 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 405 (636)
+.+. .+|.++.. +++|+.|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 264 -----~~l~-~l~~~l~~-l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 -----ESLF-QVMKLLNQ-ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -----HHHH-HHHHHHHT-CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -----cchh-hhHHHHhc-ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1111 46777765 899999999999999 56665 5899999999999999998766
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=253.55 Aligned_cols=259 Identities=25% Similarity=0.321 Sum_probs=158.9
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCC--CChhhhcCCCCCcE
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT--LVPSWLFGLSHLVF 277 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~ 277 (636)
+.++.+++.++..|. ...++|++|++++|+++ .+|...+.++++|++|++++|.++.. .+ ..+..+++|++
T Consensus 10 ~~l~c~~~~l~~ip~-----~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-----GIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCS-QSDFGTTSLKY 82 (306)
T ss_dssp TEEECCSSCCSSCCS-----CCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEE-HHHHSCSCCCE
T ss_pred CEEEcCCCCcccCCC-----CCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcc-cccccccccCE
Confidence 355565555555543 11234555555555554 33323344555555555555544311 12 33334444444
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccc
Q 006657 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIP 356 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip 356 (636)
|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------- 124 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS------------------------------------- 124 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTT-------------------------------------
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhh-------------------------------------
Confidence 444444444 233334444444444444444443222 23333
Q ss_pred hHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc-ccchhhhhhhhhccccCCCccccccccceeece
Q 006657 357 AWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG-TLPRCINNLTAMMNQENSMETDKEYDTFTIELS 435 (636)
Q Consensus 357 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~ 435 (636)
+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..+++
T Consensus 125 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~---------------------- 176 (306)
T 2z66_A 125 ------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---------------------- 176 (306)
T ss_dssp ------CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT----------------------
T ss_pred ------ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC----------------------
Confidence 4555556666666655666667777888888888888775 45555544433
Q ss_pred EEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCcc
Q 006657 436 ILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515 (636)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~ 515 (636)
|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 177 ------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 177 ------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp ------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred ------------------CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 77888888888877788888888888888888888877776788888888888888888888
Q ss_pred CchhccCC-CCCCeeeccCCcCcccCCCCCccCCc
Q 006657 516 IPQSISSL-TFLSHLNLSDNNLTGKIPLGTQLQGF 549 (636)
Q Consensus 516 ~p~~l~~l-~~L~~L~ls~N~l~g~ip~~~~~~~~ 549 (636)
.|..+..+ ++|++|++++|+++|.++..+..+++
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred CHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 88888887 48888888888888877654444443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=249.05 Aligned_cols=233 Identities=22% Similarity=0.300 Sum_probs=165.7
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+++.|++++|.++ .+| ..+..+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3444444444443 333 33444555555555555555 45555555555555555555555 44555555555555555
Q ss_pred cCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhh
Q 006657 329 RENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408 (636)
Q Consensus 329 ~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 408 (636)
++|++.+.+|..+...++.+ .+ . .+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|..+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~-----~~----~-~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASG-----EH----Q-GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAI 225 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CC-----CE----E-ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred CCCCCccccChhHhhccchh-----hh----c-cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence 55555555554443322221 11 1 3778888888888888 788888899999999999999984 55556
Q ss_pred hhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccC
Q 006657 409 NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFL 488 (636)
Q Consensus 409 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 488 (636)
..+++ |++|++++|++.+.+|..++.+++|++|++++|++
T Consensus 226 ~~l~~----------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 226 HHLPK----------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp GGCTT----------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred ccCCC----------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 55544 88899999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCc
Q 006657 489 AGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 489 ~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 537 (636)
.+.+|..++.+++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999877654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=256.64 Aligned_cols=273 Identities=18% Similarity=0.225 Sum_probs=175.4
Q ss_pred EEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEc
Q 006657 201 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280 (636)
Q Consensus 201 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 280 (636)
..+++++.++..|. .+ .++|++|++++|++++ ++...+.++++|++|++++|.+++ +++..+.++++|++|++
T Consensus 35 ~c~~~~~~l~~iP~---~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 35 ICKGSSGSLNSIPS---GL--TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp EEECCSTTCSSCCT---TC--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred EeeCCCCCcccccc---cc--cccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEEC
Confidence 34444555544432 11 2355666666665553 332355666666666666666653 33355666666666666
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEccCcc-cccccCccceEEEccCCCCccccc-h
Q 006657 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENR-LQGMISSVLVVFDIGENGFSGNIP-A 357 (636)
Q Consensus 281 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~p~~L~~L~l~~n~l~g~ip-~ 357 (636)
++|++++..+..++++++|++|++++|++++..+ ..+..+++|++|++++|. +. .++ .
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-------------------~~~~~ 168 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-------------------KIQRK 168 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-------------------EECTT
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-------------------ccCHH
Confidence 6666664333335666666666666666653322 245566666666666653 33 221 2
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchh-hhhhhhhccccCCCccccccccceeeceE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRC-INNLTAMMNQENSMETDKEYDTFTIELSI 436 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 436 (636)
.+. .+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|.. +..+
T Consensus 169 ~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~------------------------- 221 (353)
T 2z80_A 169 DFA-GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVT------------------------- 221 (353)
T ss_dssp TTT-TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHT-------------------------
T ss_pred Hcc-CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhc-------------------------
Confidence 222 3667777777777777777778888888888888888875 44432 2222
Q ss_pred EEEeeccccccccccccccEEECcCCccCccCCcccc---cccCCCeEeCCCccCcC----CCCccccCCCCCCEEeCCC
Q 006657 437 LVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMT---NLLALQSLNLSHNFLAG----KIPENVGAMRSLESIDFSG 509 (636)
Q Consensus 437 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~---~l~~L~~L~Ls~N~l~~----~ip~~~~~l~~L~~L~Ls~ 509 (636)
++|+.|++++|.+++..+..+. ..+.++.++++++.+++ .+|..+..+++|++|++++
T Consensus 222 ---------------~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 222 ---------------SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp ---------------TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred ---------------ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 3378888888888876555443 45678888888888876 4778889999999999999
Q ss_pred CCCCccCchh-ccCCCCCCeeeccCCcCcccCCC
Q 006657 510 NLLSGRIPQS-ISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 510 N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus 287 N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 9999 55655 58999999999999999998874
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=259.34 Aligned_cols=260 Identities=21% Similarity=0.193 Sum_probs=174.9
Q ss_pred CCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE
Q 006657 198 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 277 (636)
..+.++.++..++..|. .+ .++++.|+|++|++++..+ ..+.++++|++|+|++|.++ .+++..|.++++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~---~~--~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD---GI--STNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNT 116 (440)
T ss_dssp TSCEEECCSCCCSSCCS---CC--CTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCE
T ss_pred CCCEEEeCCCCcCcCCC---CC--CCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCE
Confidence 34566666666665543 11 2456666666666554333 45555566666666666555 333355555555555
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccch
Q 006657 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPA 357 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~ 357 (636)
|+|++|++++..+..+..+++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~------------------------- 171 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK------------------------- 171 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-------------------------
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-------------------------
Confidence 5555555554444445555555555555555554444445555555555554432
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
.+....+..|..+++|++|++++|+++ .+|. +.
T Consensus 172 -----------------~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~---------------------------- 204 (440)
T 3zyj_A 172 -----------------RLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT---------------------------- 204 (440)
T ss_dssp -----------------TCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CT----------------------------
T ss_pred -----------------CcceeCcchhhcccccCeecCCCCcCc-cccc-cC----------------------------
Confidence 122122335677888888888888887 4442 22
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
.+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 205 ------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 205 ------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp ------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred ------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 23448899999999998889999999999999999999998889999999999999999999998888
Q ss_pred hhccCCCCCCeeeccCCcCcccCCCCCccCC
Q 006657 518 QSISSLTFLSHLNLSDNNLTGKIPLGTQLQG 548 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~ 548 (636)
..+..+++|++|++++|++.|.+...+...+
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred hHhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 8889999999999999999998876544333
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=247.95 Aligned_cols=278 Identities=21% Similarity=0.208 Sum_probs=219.1
Q ss_pred CCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCC--CCCccc
Q 006657 167 LQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS--LPELPI 244 (636)
Q Consensus 167 L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~ 244 (636)
-+.++++++.++..|.. -.++|++|++++|.++..+. ..+..+++|++|++++|.++.. .+ ..+
T Consensus 9 ~~~l~c~~~~l~~ip~~-----------~~~~l~~L~L~~n~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~ 74 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTG-----------IPSSATRLELESNKLQSLPH--GVFDKLTQLTKLSLSSNGLSFKGCCS-QSD 74 (306)
T ss_dssp TTEEECCSSCCSSCCSC-----------CCTTCCEEECCSSCCCCCCT--TTTTTCTTCSEEECCSSCCCEEEEEE-HHH
T ss_pred CCEEEcCCCCcccCCCC-----------CCCCCCEEECCCCccCccCH--hHhhccccCCEEECCCCccCcccCcc-ccc
Confidence 36789998887776532 23689999999999998764 1467899999999999999732 24 456
Q ss_pred cCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCcccchhhhCCCCC
Q 006657 245 ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP-DGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRL 323 (636)
Q Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 323 (636)
..+++|++|++++|.+. .++ ..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 75 ~~~~~L~~L~Ls~n~i~-~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HSCSCCCEEECCSCSEE-EEE-EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred ccccccCEEECCCCccc-cCh-hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 67899999999999997 566 668899999999999999986654 578999999999999999998888888888889
Q ss_pred CEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccc
Q 006657 324 EYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403 (636)
Q Consensus 324 ~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 403 (636)
++|++++|.+++. .+|..+..+++|++|++++|++++.
T Consensus 153 ~~L~l~~n~l~~~------------------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 153 EVLKMAGNSFQEN------------------------------------------FLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp CEEECTTCEEGGG------------------------------------------EECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CEEECCCCccccc------------------------------------------cchhHHhhCcCCCEEECCCCCcCCc
Confidence 8888888876521 2345566677788888888877766
Q ss_pred cchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeC
Q 006657 404 LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNL 483 (636)
Q Consensus 404 ~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 483 (636)
.|..+.++++ |++|++++|++++..+..+..+++|++|++
T Consensus 191 ~~~~~~~l~~----------------------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 191 SPTAFNSLSS----------------------------------------LQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp CTTTTTTCTT----------------------------------------CCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CHHHhcCCCC----------------------------------------CCEEECCCCccCccChhhccCcccCCEeEC
Confidence 6666654443 777888888888766767888899999999
Q ss_pred CCccCcCCCCccccCCC-CCCEEeCCCCCCCccCc--hhccCCCCCCeeeccCCcCcccCCC
Q 006657 484 SHNFLAGKIPENVGAMR-SLESIDFSGNLLSGRIP--QSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 484 s~N~l~~~ip~~~~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
++|++++..|..+..++ +|++|++++|.+++..+ .....+...+.+.+..+.+.|..|.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 99999988888888884 89999999999986532 2233345566677778888887775
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-28 Score=259.99 Aligned_cols=255 Identities=20% Similarity=0.174 Sum_probs=165.9
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 278 (636)
.+.++.++..++..|. .+ .+++++|+|++|++++..+ ..+.++++|++|+|++|.+++ +++..|.++++|++|
T Consensus 56 ~~~v~c~~~~l~~iP~---~~--~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ---GI--PSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSSCCS---CC--CTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEE
T ss_pred CcEEEECCCCcCccCC---CC--CCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEE
Confidence 4556666665555543 11 2455555555555554333 345555555555555555542 222445555555555
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchH
Q 006657 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAW 358 (636)
Q Consensus 279 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~ 358 (636)
+|++|++++..+..+..+++|++|++++|+++...+..|.++++|++|+
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~------------------------------- 177 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD------------------------------- 177 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE-------------------------------
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe-------------------------------
Confidence 5555555544334445555555555555555443334444444444444
Q ss_pred HHHhhhcCceEecCCCcCcccC-ccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 359 IGEKLLRNLILRLRSNKFDGQI-PAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 359 ~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
+++|+..+.+ +..+..+++|++|++++|++++ +|. +..
T Consensus 178 ------------l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~--------------------------- 216 (452)
T 3zyi_A 178 ------------LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTP--------------------------- 216 (452)
T ss_dssp ------------CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTT---------------------------
T ss_pred ------------CCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-ccc---------------------------
Confidence 4443222223 2356778888888888888873 332 222
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 217 -------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 217 -------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp -------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 3348889999999998888899999999999999999998888899999999999999999998777
Q ss_pred hhccCCCCCCeeeccCCcCcccCCCCCc
Q 006657 518 QSISSLTFLSHLNLSDNNLTGKIPLGTQ 545 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~ 545 (636)
..+..+++|++|++++|++.|.+...+.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred HHhccccCCCEEEccCCCcCCCCCchHH
Confidence 8888999999999999999998876543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=240.99 Aligned_cols=244 Identities=20% Similarity=0.163 Sum_probs=152.1
Q ss_pred CEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEcc
Q 006657 226 QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLR 305 (636)
Q Consensus 226 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 305 (636)
++++.+++.++ .+|. .-.++|++|++++|.++ .+++..|..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~---~~~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCT---TCCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCc---CCCCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 34555555544 3331 11234555555555554 2332444455555555555555544444444455555555555
Q ss_pred CCc-CCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcccc
Q 006657 306 SNN-FISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAEL 384 (636)
Q Consensus 306 ~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l 384 (636)
+|. +....|..+..+ ++|++|++++|.+++..|..+
T Consensus 89 ~n~~l~~~~~~~~~~l-------------------------------------------~~L~~L~l~~n~l~~~~~~~~ 125 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGL-------------------------------------------GRLHTLHLDRCGLQELGPGLF 125 (285)
T ss_dssp SCTTCCCCCTTTTTTC-------------------------------------------TTCCEEECTTSCCCCCCTTTT
T ss_pred CCCCccccCHHHhcCC-------------------------------------------cCCCEEECCCCcCCEECHhHh
Confidence 554 333334444444 455555555555555555666
Q ss_pred CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCcc
Q 006657 385 CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464 (636)
Q Consensus 385 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 464 (636)
..+++|++|++++|++++..+..+.++++ |++|++++|++
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------------------------L~~L~l~~n~l 165 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGN----------------------------------------LTHLFLHGNRI 165 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------------------------------CCEEECCSSCC
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCC----------------------------------------ccEEECCCCcc
Confidence 77777888888888777555444544433 67788888888
Q ss_pred CccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCC
Q 006657 465 SGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544 (636)
Q Consensus 465 ~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 544 (636)
++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++.|.++..+
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~ 245 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHH
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHH
Confidence 76666668888888888888888888778888888888888888888887777778888888888888888888877655
Q ss_pred ccCCccccccCCC
Q 006657 545 QLQGFNASCFAGN 557 (636)
Q Consensus 545 ~~~~~~~~~~~~n 557 (636)
..+++.......+
T Consensus 246 ~~~~l~~~~~~~~ 258 (285)
T 1ozn_A 246 LWAWLQKFRGSSS 258 (285)
T ss_dssp HHHHHHHCCSEEC
T ss_pred HHHHHHhcccccC
Confidence 5555544333333
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=255.22 Aligned_cols=289 Identities=23% Similarity=0.263 Sum_probs=234.6
Q ss_pred CCCC-CCCCcccccEEeC------CCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCC
Q 006657 54 ASWS-DGNCCTWAGVVCN------DSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNN 126 (636)
Q Consensus 54 ~~W~-~~~~c~w~gv~C~------~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n 126 (636)
+.|. ..+||.|+|..|. -....++.|+++++ .+. .+|..+. ++|++|++++|
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n------------------~L~-~lp~~l~--~~L~~L~L~~N 71 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES------------------GLT-TLPDCLP--AHITTLVIPDN 71 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS------------------CCS-CCCSCCC--TTCSEEEECSC
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCC------------------CcC-ccChhhC--CCCcEEEecCC
Confidence 4565 6788999764221 01134788999886 444 6777665 89999999999
Q ss_pred CCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccC
Q 006657 127 NFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTG 206 (636)
Q Consensus 127 ~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~ 206 (636)
.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+...+. .+++|++|++++
T Consensus 72 ~l~--~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~------------~l~~L~~L~L~~ 130 (622)
T 3g06_A 72 NLT--SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA------------LPSGLCKLWIFG 130 (622)
T ss_dssp CCS--CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC------------CCTTCCEEECCS
T ss_pred CCC--CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC------------CCCCcCEEECCC
Confidence 998 4776 5799999999999998 5666 77999999999998876431 468899999999
Q ss_pred CCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCc
Q 006657 207 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 207 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 286 (636)
|.++..+. .+++|++|++++|.+++ +|. .+++|+.|++++|.++ .++ ..+++|++|++++|.++
T Consensus 131 N~l~~lp~------~l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 131 NQLTSLPV------LPPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp SCCSCCCC------CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS
T ss_pred CCCCcCCC------CCCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCC
Confidence 99998765 25899999999999984 552 3578999999999998 455 45789999999999998
Q ss_pred ccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc--cCccceEEEccCCCCccccchHHHHhhh
Q 006657 287 GPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM--ISSVLVVFDIGENGFSGNIPAWIGEKLL 364 (636)
Q Consensus 287 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~L~~L~l~~n~l~g~ip~~~~~~~~ 364 (636)
+ +|.. .++|+.|++++|.++ .+|. .+++|++|++++|++++. .+.+|+.|++++|.++ .+|. .++
T Consensus 195 ~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~-~lp~----~~~ 261 (622)
T 3g06_A 195 S-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPM----LPS 261 (622)
T ss_dssp C-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CCT
T ss_pred C-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC-cCCc----ccc
Confidence 5 5543 478999999999998 4553 347899999999999873 3458999999999998 6777 378
Q ss_pred cCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhh
Q 006657 365 RNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAM 414 (636)
Q Consensus 365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 414 (636)
+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..++..
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 9999999999999 789999999999999999999999999988887753
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-30 Score=283.95 Aligned_cols=376 Identities=14% Similarity=0.053 Sum_probs=270.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcC-CCC-CCEEEccCCc-cCC-CCCccCcCCCCCCeEeccCCCCCCcccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGF-MGS-LRHIDLSRAE-LTG-MIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLEN 189 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~-l~~-L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~ 189 (636)
.+++|++|+|++|.+++. .+..+.. +++ |++|++++|. ++. .++....++++|++|++++|.+.......+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~--- 185 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH--- 185 (592)
T ss_dssp HCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH---
T ss_pred hCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH---
Confidence 789999999999988764 4555554 344 9999999986 221 1223334789999999999976443211000
Q ss_pred cccccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC---CCC
Q 006657 190 FSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD---NTL 264 (636)
Q Consensus 190 l~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~---~~~ 264 (636)
....++++|++|++++|.+++. ..+...+..+++|++|++++|.+.+ ++ ..+.++++|+.|+++..... +..
T Consensus 186 -~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 186 -ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp -HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred -HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHH
Confidence 1245789999999999998854 2334455678999999999998875 56 56888999999999864322 122
Q ss_pred ChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEccCcccccc-c-----
Q 006657 265 VPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGM-I----- 337 (636)
Q Consensus 265 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~-~----- 337 (636)
. ..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+. +
T Consensus 263 ~-~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 263 Y-MNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ 339 (592)
T ss_dssp S-SCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH
T ss_pred H-HHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH
Confidence 2 4567788999999988643 4678888889999999999999765444 446889999999998 444322 1
Q ss_pred -CccceEEEcc-----------CCCCccccchHHHHhhhcCceEecCCCcCcccCccccCC-CCCCCEEEcc----CccC
Q 006657 338 -SSVLVVFDIG-----------ENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCR-LTSLHILDLS----HNNF 400 (636)
Q Consensus 338 -p~~L~~L~l~-----------~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l 400 (636)
-..|+.|+++ .|.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++ .|++
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 1368888888 356665444444445788888888888888776666655 7888888886 5666
Q ss_pred ccc-----cchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCc--cCccCCcccc
Q 006657 401 SGT-----LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN--LSGDIPEEMT 473 (636)
Q Consensus 401 ~~~-----~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~--l~g~~p~~~~ 473 (636)
++. ++..+. .+++|+.|+++.|. +++..+..+.
T Consensus 420 ~~~p~~~~~~~~~~----------------------------------------~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 420 TDLPLDNGVRSLLI----------------------------------------GCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp SSCCCHHHHHHHHH----------------------------------------HCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred cCchHHHHHHHHHH----------------------------------------hCCCCCEEEEecCCCCccHHHHHHHH
Confidence 643 222222 34558899997543 6766665554
Q ss_pred -cccCCCeEeCCCccCcC-CCCccccCCCCCCEEeCCCCCCCcc-CchhccCCCCCCeeeccCCcCccc
Q 006657 474 -NLLALQSLNLSHNFLAG-KIPENVGAMRSLESIDFSGNLLSGR-IPQSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 474 -~l~~L~~L~Ls~N~l~~-~ip~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
.+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|+++..
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 48899999999999886 3455567889999999999998755 444556789999999999998754
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-27 Score=234.92 Aligned_cols=254 Identities=20% Similarity=0.222 Sum_probs=194.1
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 278 (636)
-++++.+++.++..|. ...++|++|++++|.+++..+ ..+.++++|++|++++|.+++ +.+..+.++++|++|
T Consensus 13 ~~~~~c~~~~l~~ip~-----~~~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPV-----GIPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQL 85 (285)
T ss_dssp SCEEECCSSCCSSCCT-----TCCTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEE
T ss_pred CeEEEcCcCCcccCCc-----CCCCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccce-eCHhhcCCccCCCEE
Confidence 3789999999988864 235799999999999986544 679999999999999999984 444889999999999
Q ss_pred EccCCc-CcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccch
Q 006657 279 DLGFNS-FGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPA 357 (636)
Q Consensus 279 ~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~ 357 (636)
++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------~~- 145 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------------------LP- 145 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------CC-
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------------------cC-
Confidence 999997 876668889999999999999999998888888888888888888887662 22
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
+..+..+++|++|++++|++++..+..+..+++
T Consensus 146 -----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------------------ 178 (285)
T 1ozn_A 146 -----------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS------------------------ 178 (285)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT------------------------
T ss_pred -----------------------HhHhccCCCccEEECCCCcccccCHHHhcCccc------------------------
Confidence 233555666777777777766444444444333
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
|++|++++|.+++..|..+.++++|++|++++|++++..+..+..+++|++|++++|.+....+
T Consensus 179 ----------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 179 ----------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ----------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ----------------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 6677777777777777778888888888888888887666667888888888888888875443
Q ss_pred hhccCCCCCCeeeccCCcCcccCCCC
Q 006657 518 QSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
.. .-...++.+..+.+.+.|..|..
T Consensus 243 ~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 243 AR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp GH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cH-HHHHHHHhcccccCccccCCchH
Confidence 21 11133555667788888888753
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=242.74 Aligned_cols=228 Identities=24% Similarity=0.230 Sum_probs=173.5
Q ss_pred ccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEe
Q 006657 92 FWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLD 171 (636)
Q Consensus 92 ~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 171 (636)
..++.+++++|.+.+..+.++.++++|++|+|++|.++.. .+..|.++++|++|++++|++++..+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4455666666788777778888888888888888888754 556788888888888888888866666788888888888
Q ss_pred ccCCCCCCcccccccccccccccCCCCCcEEEccCCC-CCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCC
Q 006657 172 LSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL 250 (636)
Q Consensus 172 Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 250 (636)
+++|.+...+.. .+.++++|++|++++|+ +...+. ..+..+++|++|++++|+++ .+| .+..+++|
T Consensus 143 L~~N~i~~~~~~--------~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L 209 (440)
T 3zyj_A 143 LRNNPIESIPSY--------AFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLR-EIP--NLTPLIKL 209 (440)
T ss_dssp CCSCCCCEECTT--------TTTTCTTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTSCCS-SCC--CCTTCSSC
T ss_pred CCCCcccccCHH--------HhhhCcccCEeCCCCCCCcceeCc--chhhcccccCeecCCCCcCc-ccc--ccCCCccc
Confidence 888877654322 26778888888888743 333322 24667888888888888887 555 47788888
Q ss_pred cEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccC
Q 006657 251 YTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330 (636)
Q Consensus 251 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 330 (636)
+.|++++|.+++ +++..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|++|++++
T Consensus 210 ~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 210 DELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 888888888874 4447788888888888888888877777788888888888888888877777777888888888888
Q ss_pred cccc
Q 006657 331 NRLQ 334 (636)
Q Consensus 331 n~l~ 334 (636)
|++.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8765
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-26 Score=243.87 Aligned_cols=207 Identities=20% Similarity=0.162 Sum_probs=152.7
Q ss_pred CCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCcccc
Q 006657 166 NLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIA 245 (636)
Q Consensus 166 ~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 245 (636)
..+.++.+++.+..+|.. + .+++++|+|++|.+++.+. ..+..+++|++|+|++|.+++..+ ..+.
T Consensus 55 ~~~~v~c~~~~l~~iP~~---------~--~~~l~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~ 120 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG---------I--PSNTRYLNLMENNIQMIQA--DTFRHLHHLEVLQLGRNSIRQIEV-GAFN 120 (452)
T ss_dssp SSCEEECCSSCCSSCCSC---------C--CTTCSEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECT-TTTT
T ss_pred CCcEEEECCCCcCccCCC---------C--CCCccEEECcCCcCceECH--HHcCCCCCCCEEECCCCccCCcCh-hhcc
Confidence 467889988887765532 1 2689999999999988732 267889999999999999996655 7899
Q ss_pred CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCccc-chhhhCCCCCC
Q 006657 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLE 324 (636)
Q Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~ 324 (636)
++++|++|+|++|.++ .+++..|.++++|++|++++|++++..+..+.++++|++|++++|...+.+ +..|.++++|+
T Consensus 121 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 121 GLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred CcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 9999999999999998 666688999999999999999999777778999999999999995444444 45688888999
Q ss_pred EEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcccc
Q 006657 325 YLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTL 404 (636)
Q Consensus 325 ~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 404 (636)
+|++++|++++ +|. +. .+++|+.|++++|.+++..|..|..+++|+.|++++|++++..
T Consensus 200 ~L~L~~n~l~~-------------------~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 200 YLNLGMCNIKD-------------------MPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp EEECTTSCCSS-------------------CCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred EEECCCCcccc-------------------ccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 99988888762 221 11 1445555555555555444555555555555555555544433
Q ss_pred chhh
Q 006657 405 PRCI 408 (636)
Q Consensus 405 p~~l 408 (636)
|..+
T Consensus 259 ~~~~ 262 (452)
T 3zyi_A 259 RNAF 262 (452)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 3333
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=248.73 Aligned_cols=269 Identities=23% Similarity=0.279 Sum_probs=148.6
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccC
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSG 195 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~ 195 (636)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++..++. .
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~------------~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV------------L 99 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC------------C
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC------------C
Confidence 35888888888888 4777664 78888888888887 5555 46777778877776654321 3
Q ss_pred CCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC
Q 006657 196 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 196 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
+++|++|++++|.+++.+. .+++|+.|++++|++++ +|. .+++|
T Consensus 100 l~~L~~L~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~-lp~-----------------------------~l~~L 143 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTS-LPV-----------------------------LPPGL 143 (622)
T ss_dssp CTTCCEEEECSCCCCCCCC------CCTTCCEEECCSSCCSC-CCC-----------------------------CCTTC
T ss_pred CCCCCEEECcCCcCCCCCC------CCCCcCEEECCCCCCCc-CCC-----------------------------CCCCC
Confidence 4555666666555555432 23445555555554442 331 12444
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNI 355 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~i 355 (636)
++|++++|++++ +|. ..++|+.|++++|.+++ +| ..+++|++|++++|++++ +
T Consensus 144 ~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-------------------l 196 (622)
T 3g06_A 144 QELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-------------------L 196 (622)
T ss_dssp CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-------------------C
T ss_pred CEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-------------------C
Confidence 444444444442 222 12344455555554442 22 223444444444444431 1
Q ss_pred chHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeece
Q 006657 356 PAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELS 435 (636)
Q Consensus 356 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~ 435 (636)
|.. .++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|..
T Consensus 197 ~~~----~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~~---------------------------- 239 (622)
T 3g06_A 197 PTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---------------------------- 239 (622)
T ss_dssp CCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred CCc----cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCCC----------------------------
Confidence 111 233444444444444 22321 2456666666666663 3311
Q ss_pred EEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCcc
Q 006657 436 ILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515 (636)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~ 515 (636)
+++|+.|++++|+++ .+|. .+++|++|+|++|+++ .+|..+.++++|+.|+|++|.+++.
T Consensus 240 ---------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 240 ---------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp ---------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred ---------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 122566677777666 4454 4566777777777776 5666677777777777777777766
Q ss_pred CchhccCCC
Q 006657 516 IPQSISSLT 524 (636)
Q Consensus 516 ~p~~l~~l~ 524 (636)
+|..+..++
T Consensus 300 ~~~~l~~L~ 308 (622)
T 3g06_A 300 TLQALREIT 308 (622)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHhcc
Confidence 666555443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-28 Score=249.51 Aligned_cols=134 Identities=24% Similarity=0.277 Sum_probs=98.0
Q ss_pred hhcCceEecCCCcCccc--Ccccc--CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEE
Q 006657 363 LLRNLILRLRSNKFDGQ--IPAEL--CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILV 438 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 438 (636)
+++|++|++++|++.+. +|..+ ..+++|++|++++|++++ ++.....+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~--------------------------- 223 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSAL--------------------------- 223 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHH---------------------------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHH---------------------------
Confidence 44444455555544433 22333 678889999999998873 22111110
Q ss_pred EeeccccccccccccccEEECcCCccCccCC-cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 439 VMKGRELAYNTMLKLVRCMDLSGNNLSGDIP-EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 439 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
...+++|++|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++++. |
T Consensus 224 ---------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p 290 (312)
T 1wwl_A 224 ---------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-P 290 (312)
T ss_dssp ---------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-C
T ss_pred ---------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-h
Confidence 1123448899999999998775 55677899999999999998 7888777 8999999999999976 6
Q ss_pred hhccCCCCCCeeeccCCcCcc
Q 006657 518 QSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l~g 538 (636)
. +..+++|++|++++|++++
T Consensus 291 ~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-TTTSCEEEEEECTTCTTTC
T ss_pred h-HhhCCCCCEEeccCCCCCC
Confidence 6 8899999999999999986
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-29 Score=281.25 Aligned_cols=400 Identities=14% Similarity=0.079 Sum_probs=284.3
Q ss_pred ecCccccCCCCCCEEeCCCCCCC---CCCCchh------------hcCCCCCCEEEccCCccCCCCCccCcCC-C-CCCe
Q 006657 107 KINPSLLDLKHLVYLDLSNNNFE---NNQIPVF------------LGFMGSLRHIDLSRAELTGMIPHQLGNL-F-NLQY 169 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L~Ls~n~l~---~~~ip~~------------l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~-~L~~ 169 (636)
.++..+..+++|++|+++++... + .+|.. ...+++|++|++++|.+++..+..++.. + +|++
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 33445678899999999875421 1 12222 2378999999999999887777767663 4 4999
Q ss_pred EeccCCCCCCcccccccccccc-cccCCCCCcEEEccCCCCCCCC-C-hhhhhCCCCCCCEEEeecCCCCC----CCCCc
Q 006657 170 LDLSIDTHNPISFSFLYLENFS-WLSGLSLLKHLDLTGVDLSTAS-D-WFLVTNMLPSLQVLKLSACSLHN----SLPEL 242 (636)
Q Consensus 170 L~Ls~n~~~~~~~~~~~~~~l~-~l~~l~~L~~L~Ls~n~l~~~~-~-~~~~~~~l~~L~~L~L~~n~l~~----~~p~~ 242 (636)
|++++|.. ... ..+. ...++++|++|+|++|.+++.. . +......+++|++|++++|.+++ .++ .
T Consensus 143 L~L~~~~~--~~~-----~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~ 214 (592)
T 3ogk_B 143 LKLDKCSG--FTT-----DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-T 214 (592)
T ss_dssp EEEESCEE--EEH-----HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-H
T ss_pred EECcCCCC--cCH-----HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-H
Confidence 99998751 100 1111 1347899999999999887652 2 22344678999999999999873 223 3
Q ss_pred cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCc---ccCCccccCCCCCCEEEccCCcCCcccchhhhC
Q 006657 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFG---GPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHK 319 (636)
Q Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 319 (636)
.+.++++|+.|++++|.+.+ ++ ..+.++++|++|+++..... +..+..+..+++|+.|+++++. .+.+|..+..
T Consensus 215 ~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~ 291 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPF 291 (592)
T ss_dssp HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGG
T ss_pred HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhh
Confidence 35678999999999999874 55 88999999999999864332 3345567888999999999864 3467888888
Q ss_pred CCCCCEEEccCccccccc-------CccceEEEccCCCCccccchHHHHhhhcCceEecCC-----------CcCccc-C
Q 006657 320 FTRLEYLSLRENRLQGMI-------SSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRS-----------NKFDGQ-I 380 (636)
Q Consensus 320 l~~L~~L~L~~n~l~~~~-------p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~-----------n~l~~~-~ 380 (636)
+++|++|++++|.+++.. ..+|+.|+++ +.+.+.....+...+++|++|++++ |.+++. +
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 999999999999976542 2378888888 4444443344444578899999983 566543 2
Q ss_pred ccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECc
Q 006657 381 PAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLS 460 (636)
Q Consensus 381 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 460 (636)
+.....+++|++|+++.|++++..+..+.. .+++|+.|+++
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~---------------------------------------~~~~L~~L~l~ 411 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGT---------------------------------------YLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHH---------------------------------------HCCSCCEEEEE
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHh---------------------------------------hCCCCcEEEEe
Confidence 223455788999999888888766555443 13348889996
Q ss_pred ----CCccCcc-----CCcccccccCCCeEeCCCcc--CcCCCCcccc-CCCCCCEEeCCCCCCCc-cCchhccCCCCCC
Q 006657 461 ----GNNLSGD-----IPEEMTNLLALQSLNLSHNF--LAGKIPENVG-AMRSLESIDFSGNLLSG-RIPQSISSLTFLS 527 (636)
Q Consensus 461 ----~N~l~g~-----~p~~~~~l~~L~~L~Ls~N~--l~~~ip~~~~-~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~ 527 (636)
.|++++. ++..+.++++|++|++++|. +++..+..++ .+++|++|++++|++++ .++..+..+++|+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 7788864 44457789999999998543 7766555554 48899999999999987 3566678899999
Q ss_pred eeeccCCcCccc-CCCC-CccCCccccccCCCC
Q 006657 528 HLNLSDNNLTGK-IPLG-TQLQGFNASCFAGNN 558 (636)
Q Consensus 528 ~L~ls~N~l~g~-ip~~-~~~~~~~~~~~~~n~ 558 (636)
+|++++|++++. ++.. ..+..+....+.+|.
T Consensus 492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred eeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 999999998754 2211 123444444555553
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=244.61 Aligned_cols=243 Identities=23% Similarity=0.215 Sum_probs=149.1
Q ss_pred CCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+++|++|++++|.+++ +++..+..+++|++|++++|.+++..+ +..+++|++|++++|++++.. ..++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 3445555555555542 222445555555555555555543332 445555555555555544221 12455555
Q ss_pred EccCcccccccCc---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccC-CCCCCCEEEccCccCcc
Q 006657 327 SLRENRLQGMISS---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-RLTSLHILDLSHNNFSG 402 (636)
Q Consensus 327 ~L~~n~l~~~~p~---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~ 402 (636)
++++|++++..+. .|+.|++++|.+++..|..+. .+++|++|++++|.+++..+..+. .+++|++|++++|++++
T Consensus 105 ~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp ECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 5555555433221 344444444444443333443 377888888888888876666653 67788888888888774
Q ss_pred ccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEe
Q 006657 403 TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLN 482 (636)
Q Consensus 403 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 482 (636)
. |... .+++|++|++++|++++ +|..+..+++|++|+
T Consensus 184 ~-~~~~-----------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 184 V-KGQV-----------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp E-ECCC-----------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred c-cccc-----------------------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 3 2111 13447888888888884 455588888888888
Q ss_pred CCCccCcCCCCccccCCCCCCEEeCCCCCCC-ccCchhccCCCCCCeeecc-CCcCcccCCC
Q 006657 483 LSHNFLAGKIPENVGAMRSLESIDFSGNLLS-GRIPQSISSLTFLSHLNLS-DNNLTGKIPL 542 (636)
Q Consensus 483 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~ip~ 542 (636)
+++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.++++ .+.+.|..|.
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 8888888 56777888888888888888887 6777788888888888888 3445555443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-28 Score=246.24 Aligned_cols=265 Identities=22% Similarity=0.200 Sum_probs=127.3
Q ss_pred CCCCC-CCCCcccccEEeCCCCCcEEEEEcCCCCCCCCCC----ccccccCCCCCcc-eeecCcccc-------CCCCCC
Q 006657 53 LASWS-DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEP----FWLEDYDDETSKL-IGKINPSLL-------DLKHLV 119 (636)
Q Consensus 53 l~~W~-~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~----~~l~~~~~~~~~l-~g~i~~~l~-------~l~~L~ 119 (636)
..+|. ...|+.+..+.......+++.++++++.+ ..| ..++.+++++|.+ .+.+|..+. ++++|+
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~ 98 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence 45676 34555666554322223466666666644 222 1244455555555 334444443 455555
Q ss_pred EEeCCCCCCCCCCCchhh--cCCCCCCEEEccCCccCCCCCccCcCC-----CCCCeEeccCCCCCCccccccccccccc
Q 006657 120 YLDLSNNNFENNQIPVFL--GFMGSLRHIDLSRAELTGMIPHQLGNL-----FNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 120 ~L~Ls~n~l~~~~ip~~l--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
+|++++|.+++. +|..+ +.+++|++|++++|++++. |..++.+ ++|++|++++|++...+.. .
T Consensus 99 ~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--------~ 168 (312)
T 1wwl_A 99 ELTLENLEVTGT-APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE--------Q 168 (312)
T ss_dssp EEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT--------T
T ss_pred EEEccCCcccch-hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH--------H
Confidence 555555555543 44433 5555555555555555544 4444444 5555555555555443211 1
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhh--CCCCCCCEEEeecCCCCC--CCCCccccCCCCCcEEEcccCCCCCCCChhh
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVT--NMLPSLQVLKLSACSLHN--SLPELPIANFSSLYTLDLSYNEFDNTLVPSW 268 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~l~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (636)
+.++++|++|++++|.+.+....+..+ ..+++|++|++++|++++ .++...+.++++|++|++++|.+++..+...
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 445555555555555544321111122 445555555555555542 1111122344555555555555554332233
Q ss_pred hcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 269 LFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 269 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 344455555555555554 4444443 4555555555555543 33 445555555555555544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-27 Score=245.66 Aligned_cols=207 Identities=23% Similarity=0.186 Sum_probs=123.6
Q ss_pred CcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 102 SKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 102 ~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
+.+...+...+..+++|++|++++|.+++. .|..++.+++|++|++++|.+++..| +..+++|++|++++|.+..
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-- 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-- 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE--
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc--
Confidence 355444444455667888888888888864 56778888888888888888875544 7788888888888876543
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
+...++|++|++++|.+++.+. ..+++|++|++++|++++..+ ..+..+++|++|++++|.++
T Consensus 95 -----------l~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 95 -----------LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp -----------EEECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCC
T ss_pred -----------ccCCCCcCEEECCCCccCCcCc-----cccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCC
Confidence 2233667777777776665531 234566666666666654333 44555566666666666655
Q ss_pred CCCChhhh-cCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 262 NTLVPSWL-FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 262 ~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+..+ ..+ ..+++|++|++++|.+++. | ....+++|++|++++|++++. |..+..+++|++|++++|+++
T Consensus 158 ~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 158 TVNF-AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp EEEG-GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC
T ss_pred cccH-HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc
Confidence 3333 332 3455566666666655533 2 122355555555555555532 223555555555555555544
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-26 Score=248.86 Aligned_cols=231 Identities=23% Similarity=0.218 Sum_probs=113.1
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+|+.|+|++|.+++ +++..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 44444444444442 222444445555555555555443332 4445555555555554443221 144555555
Q ss_pred cCcccccccCc---cceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccC-CCCCCCEEEccCccCcccc
Q 006657 329 RENRLQGMISS---VLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-RLTSLHILDLSHNNFSGTL 404 (636)
Q Consensus 329 ~~n~l~~~~p~---~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~ 404 (636)
++|.+++..+. .|+.|++++|.+++..|..+.. +++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 55544432211 2223333333333333333332 55566666666666655555554 4556666666666655331
Q ss_pred chhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCC
Q 006657 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 405 p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls 484 (636)
+.. .++.|+.|+|++|.+++ +|+.+..+++|+.|+|+
T Consensus 186 ~~~------------------------------------------~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 186 GQV------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222 (487)
T ss_dssp CCC------------------------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred ccc------------------------------------------cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEec
Confidence 110 12235566666666654 33335566666666666
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCC-ccCchhccCCCCCCeeecc
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLS-GRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 532 (636)
+|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 223 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666653 4555555666666666666665 4455555555555555554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=216.56 Aligned_cols=217 Identities=23% Similarity=0.256 Sum_probs=150.1
Q ss_pred CCCcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhc
Q 006657 59 GNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLG 138 (636)
Q Consensus 59 ~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~ 138 (636)
.++|.|.|+.|.- .+.++.++++++ .+. .+|..+. +++++|++++|.++.. .+..+.
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~------------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~ 58 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK------------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFH 58 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS------------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC------------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhc
Confidence 5789999999853 234566777765 333 3454443 5677888888877753 444677
Q ss_pred CCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhh
Q 006657 139 FMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLV 218 (636)
Q Consensus 139 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 218 (636)
.+++|++|++++|.++...+..+.++++|++|++++|.+...+.. .
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------------~ 104 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG----------------------------------V 104 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT----------------------------------T
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh----------------------------------H
Confidence 777777777777777744444456677777777776665443211 2
Q ss_pred hCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCC
Q 006657 219 TNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTS 298 (636)
Q Consensus 219 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 298 (636)
+..+++|++|++++|.+++..+ ..+.++++|++|++++|.++ .+++..+..+++|++|++++|++++..+..+.++++
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cccccCCCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 3445566666666666654333 45677778888888888876 455466778888888888888888766666788888
Q ss_pred CCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 299 LEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 299 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 888888888888766667888888888888888775
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=218.25 Aligned_cols=211 Identities=25% Similarity=0.242 Sum_probs=137.5
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+|++|++++|.++ .+++..+.++++|++|++++|++++..+..+.++++|++|++++|++++..+..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4555555555554 233245555555555555555555444445555555555555555555444445555555555555
Q ss_pred cCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccc-cchh
Q 006657 329 RENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT-LPRC 407 (636)
Q Consensus 329 ~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~ 407 (636)
++|+ +++..+..+..+++|++|++++|++++. +|..
T Consensus 108 ~~n~-------------------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 108 VETN-------------------------------------------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp TTSC-------------------------------------------CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred CCCC-------------------------------------------ccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 5544 4443344566667777777777777652 4655
Q ss_pred hhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCC----eEeC
Q 006657 408 INNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQ----SLNL 483 (636)
Q Consensus 408 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~----~L~L 483 (636)
+.++++ |++|++++|++++..+..+..+++|+ +|++
T Consensus 145 ~~~l~~----------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 145 FSNLTN----------------------------------------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp GGGCTT----------------------------------------CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred hccCCC----------------------------------------CCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 554443 66777777777766666676666666 7888
Q ss_pred CCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCC
Q 006657 484 SHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544 (636)
Q Consensus 484 s~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 544 (636)
++|++++..+..+. ..+|++|++++|++++..+..+..+++|++|++++|+++|.+|...
T Consensus 185 s~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 185 SLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred CCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 89988865554444 4589999999999997777778889999999999999999998643
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-25 Score=239.39 Aligned_cols=216 Identities=20% Similarity=0.175 Sum_probs=191.8
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccC-ccceEEEccCCCC
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMIS-SVLVVFDIGENGF 351 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~L~~L~l~~n~l 351 (636)
++|++|++++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ ..|+.|++++|.+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 489999999999998888899999999999999999997766 8999999999999999997654 5899999999999
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhh-hhhhhccccCCCccccccccc
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCIN-NLTAMMNQENSMETDKEYDTF 430 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~~~~~~~~~~~~~~~ 430 (636)
++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+. .++
T Consensus 112 ~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~------------------ 169 (487)
T 3oja_A 112 SRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD------------------ 169 (487)
T ss_dssp CCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT------------------
T ss_pred CCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC------------------
Confidence 976554 268899999999999999899999999999999999999988887664 344
Q ss_pred eeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCC
Q 006657 431 TIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510 (636)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 510 (636)
.|+.|+|++|.+++..+ ...+++|++|+|++|.+++. |..+..+++|+.|+|++|
T Consensus 170 ----------------------~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 170 ----------------------TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp ----------------------TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTS
T ss_pred ----------------------cccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCC
Confidence 38999999999997633 44699999999999999965 455999999999999999
Q ss_pred CCCccCchhccCCCCCCeeeccCCcCcc
Q 006657 511 LLSGRIPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 511 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
++++ +|..+..+++|++|++++|++.|
T Consensus 225 ~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 225 KLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred cCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 9995 78889999999999999999984
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-24 Score=210.97 Aligned_cols=140 Identities=22% Similarity=0.223 Sum_probs=111.3
Q ss_pred hhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+.++++
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------------------- 134 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK----------------------------- 134 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT-----------------------------
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC-----------------------------
Confidence 444445555555555444455677788888888888888666655555444
Q ss_pred cccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccC
Q 006657 443 RELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISS 522 (636)
Q Consensus 443 ~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 522 (636)
|++|+|++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..
T Consensus 135 -----------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 135 -----------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp -----------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -----------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 788899999988766667899999999999999999877777999999999999999999777777889
Q ss_pred CCCCCeeeccCCcCcccCCC
Q 006657 523 LTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 523 l~~L~~L~ls~N~l~g~ip~ 542 (636)
+++|++|++++|++.|.++.
T Consensus 204 l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CTTCCEEECCSSCBCCSSSS
T ss_pred ccCCCEEEecCCCeeCCCcc
Confidence 99999999999999998874
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-27 Score=262.52 Aligned_cols=376 Identities=14% Similarity=0.095 Sum_probs=202.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhc-CCCCCCEEEccCC-ccCCC-CCccCcCCCCCCeEeccCCCCCCccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLG-FMGSLRHIDLSRA-ELTGM-IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENF 190 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l 190 (636)
.+++|++|+|++|.+++. .+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+.......+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~---- 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS---- 177 (594)
T ss_dssp HCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG----
T ss_pred hCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH----
Confidence 456666666666665543 333332 4666666666666 33322 233333566666666666654332111100
Q ss_pred ccccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCC-------CC
Q 006657 191 SWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE-------FD 261 (636)
Q Consensus 191 ~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-------l~ 261 (636)
.....+++|++|+++++. ... ..+......+++|++|++++|...+.++ ..+.++++|+.|+++.+. +.
T Consensus 178 ~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhHH
Confidence 012255566666666655 111 1111122335666666666662222233 344555666666654432 11
Q ss_pred CCCChhhhcCCCCCcEE-EccCCcCcccCCccccCCCCCCEEEccCCcCCcccc-hhhhCCCCCCEEEccCcccccc-c-
Q 006657 262 NTLVPSWLFGLSHLVFL-DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP-TWLHKFTRLEYLSLRENRLQGM-I- 337 (636)
Q Consensus 262 ~~~~~~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~-~- 337 (636)
.++ ..+.++++|+.| .+..... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. +
T Consensus 256 -~l~-~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 256 -GLS-VALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp -HHH-HHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred -HHH-HHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 122 345566666666 2332221 2344444456777777777777654322 23456777777777776 3321 1
Q ss_pred -----CccceEEEc---------cCCCCccccchHHHHhhhcCceEecCCCcCcccCccccC-CCCCCCEEEcc--C---
Q 006657 338 -----SSVLVVFDI---------GENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-RLTSLHILDLS--H--- 397 (636)
Q Consensus 338 -----p~~L~~L~l---------~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~--- 397 (636)
-..|+.|++ +.+.+++.....+...+++|+.|.+..|.+++..+..+. .+++|+.|+++ +
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 125666666 234444433333433466666666666666654444443 35666677666 2
Q ss_pred -ccCccccc-hhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCccccc-
Q 006657 398 -NNFSGTLP-RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTN- 474 (636)
Q Consensus 398 -N~l~~~~p-~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~- 474 (636)
|++++... ..+ ......+++|+.|++++ .+++..+..+..
T Consensus 412 ~~~l~~~~~~~~~------------------------------------~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 412 PDYLTLEPLDIGF------------------------------------GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp CCTTTCCCTHHHH------------------------------------HHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred cccccCCchhhHH------------------------------------HHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 33331100 011 01123345688888877 666665555555
Q ss_pred ccCCCeEeCCCccCcCCCCccc-cCCCCCCEEeCCCCCCCccCch-hccCCCCCCeeeccCCcCc
Q 006657 475 LLALQSLNLSHNFLAGKIPENV-GAMRSLESIDFSGNLLSGRIPQ-SISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 475 l~~L~~L~Ls~N~l~~~ip~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 537 (636)
+++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 7888888888888876555444 5678888888888888654443 3345788888888888874
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=211.28 Aligned_cols=208 Identities=21% Similarity=0.228 Sum_probs=155.4
Q ss_pred hcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccC
Q 006657 269 LFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGE 348 (636)
Q Consensus 269 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~ 348 (636)
+.++++++++++++++++ .+|..+. +++++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------ 70 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc------------
Confidence 445556666666666665 3444443 5666677777766666666666667777777766666522
Q ss_pred CCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccc
Q 006657 349 NGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYD 428 (636)
Q Consensus 349 n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~ 428 (636)
+.. ..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..|..|.++++
T Consensus 71 -------~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~--------------- 125 (290)
T 1p9a_G 71 -------QVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--------------- 125 (290)
T ss_dssp -------ECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---------------
T ss_pred -------cCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC---------------
Confidence 111 12566777777777776 56777888889999999999988666666665554
Q ss_pred cceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCC
Q 006657 429 TFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFS 508 (636)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls 508 (636)
|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|+
T Consensus 126 -------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 126 -------------------------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp -------------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -------------------------CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 7889999999997777778899999999999999996666667889999999999
Q ss_pred CCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 509 GNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 509 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
+|+++ .+|..+....+|+++++++|++.|.+..
T Consensus 181 ~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp SSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 99998 6888888888999999999999987743
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=208.42 Aligned_cols=231 Identities=25% Similarity=0.213 Sum_probs=185.4
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD 279 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 279 (636)
...+..+..+...|. .+ .++|++|++++|++++..+ ..+.++++|++|++++|.++ .+++..+.++++|++|+
T Consensus 10 ~~~~c~~~~l~~ip~---~l--~~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 82 (276)
T 2z62_A 10 ITYQCMELNFYKIPD---NL--PFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 82 (276)
T ss_dssp TEEECTTSCCSSCCS---SS--CTTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred ceEEecCCCccccCC---CC--CCCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEE
Confidence 356667777776654 22 2579999999999986544 68999999999999999998 55557899999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHH
Q 006657 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWI 359 (636)
Q Consensus 280 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~ 359 (636)
+++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------- 139 (276)
T 2z62_A 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------- 139 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------
T ss_pred CCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----------------------
Confidence 999999988888899999999999999999977666788888888888877776521
Q ss_pred HHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEE
Q 006657 360 GEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVV 439 (636)
Q Consensus 360 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (636)
.+|..+..+++|++|++++|++++..+..+..+..++.
T Consensus 140 -------------------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~----------------------- 177 (276)
T 2z62_A 140 -------------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL----------------------- 177 (276)
T ss_dssp -------------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT-----------------------
T ss_pred -------------------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc-----------------------
Confidence 24566777888889999999888777777776665422
Q ss_pred eecccccccccccccc-EEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 440 MKGRELAYNTMLKLVR-CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 440 ~~~~~~~~~~~~~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+. .|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|++|++++|.+.+..|
T Consensus 178 --------------l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 178 --------------LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp --------------CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred --------------cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 23 799999999865555444 4589999999999997766778899999999999999987543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-27 Score=261.15 Aligned_cols=391 Identities=15% Similarity=0.091 Sum_probs=272.4
Q ss_pred ccccCCCCCcceeecCcccc-CCCCCCEEeCCCC-CCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCc----CCCCC
Q 006657 94 LEDYDDETSKLIGKINPSLL-DLKHLVYLDLSNN-NFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLG----NLFNL 167 (636)
Q Consensus 94 l~~~~~~~~~l~g~i~~~l~-~l~~L~~L~Ls~n-~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L 167 (636)
++.++++++.+.+..+..+. .+++|++|++++| .++...++..+.++++|++|++++|.+++..+..+. .+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 45555666677777777775 6899999999999 555433566667899999999999998876554443 67899
Q ss_pred CeEeccCCCCCCccccccccccccc-ccCCCCCcEEEccCCC-CCCCCChhhhhCCCCCCCEEEeecCCCC------CCC
Q 006657 168 QYLDLSIDTHNPISFSFLYLENFSW-LSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLH------NSL 239 (636)
Q Consensus 168 ~~L~Ls~n~~~~~~~~~~~~~~l~~-l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~------~~~ 239 (636)
++|++++|. ..... ..+.. ..++++|++|++++|. +.+ ++..+..+++|++|++..+... ..+
T Consensus 187 ~~L~l~~~~-~~~~~-----~~l~~l~~~~~~L~~L~L~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 187 VSLNISCLA-SEVSF-----SALERLVTRCPNLKSLKLNRAVPLEK---LATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp CEEECTTCC-SCCCH-----HHHHHHHHHCTTCCEEECCTTSCHHH---HHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred cEEEecccC-CcCCH-----HHHHHHHHhCCCCcEEecCCCCcHHH---HHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 999999885 11111 11111 3467999999999883 222 4456678899999997765421 012
Q ss_pred CCccccCCCCCcEE-EcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCc-cccCCCCCCEEEccCCcCCcc-cchh
Q 006657 240 PELPIANFSSLYTL-DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD-GLQNLTSLEHLDLRSNNFISS-IPTW 316 (636)
Q Consensus 240 p~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~-~p~~ 316 (636)
+ ..+.++++|+.| .+..... +.++ ..+..+++|++|++++|.+++.... .+..+++|++|++++| +... ++..
T Consensus 258 ~-~~l~~~~~L~~Ls~~~~~~~-~~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 258 S-VALSGCKELRCLSGFWDAVP-AYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp H-HHHHTCTTCCEEECCBTCCG-GGGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred H-HHHhcCCCcccccCCcccch-hhHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 2 256788889988 4433322 2333 4555778999999999987644322 2568899999999988 4422 3333
Q ss_pred hhCCCCCCEEEccC---------ccccccc-------CccceEEEccCCCCccccchHHHHhhhcCceEecC--C----C
Q 006657 317 LHKFTRLEYLSLRE---------NRLQGMI-------SSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLR--S----N 374 (636)
Q Consensus 317 l~~l~~L~~L~L~~---------n~l~~~~-------p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~--~----n 374 (636)
...+++|++|++++ +.+++.. -..|+.|+++.|.+++..+..+...+++|+.|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 34588999998843 4554321 24788999999999887777777668999999999 4 4
Q ss_pred cCcc-----cCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccccccc
Q 006657 375 KFDG-----QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNT 449 (636)
Q Consensus 375 ~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (636)
.+++ .++..+..+++|+.|++++ .+++..+..+..
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~--------------------------------------- 453 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT--------------------------------------- 453 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH---------------------------------------
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH---------------------------------------
Confidence 5552 2223366788999999977 666554444432
Q ss_pred ccccccEEECcCCccCccCCccc-ccccCCCeEeCCCccCcCCCCc-cccCCCCCCEEeCCCCCCCccCchhc-cCCCCC
Q 006657 450 MLKLVRCMDLSGNNLSGDIPEEM-TNLLALQSLNLSHNFLAGKIPE-NVGAMRSLESIDFSGNLLSGRIPQSI-SSLTFL 526 (636)
Q Consensus 450 ~~~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~~~ip~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L 526 (636)
.+++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|++|++++|+++......+ ..++.|
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 13448999999999987766555 6799999999999999765443 34568999999999999965444444 456777
Q ss_pred CeeeccCCcCc
Q 006657 527 SHLNLSDNNLT 537 (636)
Q Consensus 527 ~~L~ls~N~l~ 537 (636)
+...+..+.-.
T Consensus 534 ~i~~~~~~~~~ 544 (594)
T 2p1m_B 534 NVEVIDERGAP 544 (594)
T ss_dssp EEEEECSSSCG
T ss_pred EEEEecCCCcc
Confidence 66666655433
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-24 Score=212.56 Aligned_cols=204 Identities=24% Similarity=0.238 Sum_probs=143.4
Q ss_pred cCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCC
Q 006657 270 FGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGEN 349 (636)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n 349 (636)
..+++|++|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-------------- 99 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-------------- 99 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC--------------
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc--------------
Confidence 345556666666665542 2 2355566666666666666542 245566666666666665552
Q ss_pred CCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcccccccc
Q 006657 350 GFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDT 429 (636)
Q Consensus 350 ~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~ 429 (636)
+|......+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 100 -----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---------------- 158 (272)
T 3rfs_A 100 -----LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN---------------- 158 (272)
T ss_dssp -----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------
T ss_pred -----cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc----------------
Confidence 22221113566666666666666666666778888888888888888666555555444
Q ss_pred ceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCC
Q 006657 430 FTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSG 509 (636)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~ 509 (636)
|++|++++|++++..+..++.+++|++|++++|++++..|..+..+++|+.|++++
T Consensus 159 ------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 159 ------------------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp ------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ------------------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 78889999998877777788899999999999999988887788999999999999
Q ss_pred CCCCccCchhccCCCCCCeeeccCCcCcccCCCC
Q 006657 510 NLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLG 543 (636)
Q Consensus 510 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 543 (636)
|.+.+.. +.|+.++++.|.++|.+|..
T Consensus 215 N~~~~~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 215 NPWDCTC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred CCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence 9888654 46888999999999998863
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=220.01 Aligned_cols=256 Identities=18% Similarity=0.165 Sum_probs=152.8
Q ss_pred EEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh----hhhcCCC-CCcEEEccCCcCcccCCccccCC-----C
Q 006657 228 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP----SWLFGLS-HLVFLDLGFNSFGGPIPDGLQNL-----T 297 (636)
Q Consensus 228 L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~ 297 (636)
+.++.|.+++.+| ..+...++|++|++++|.++ ..++ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 5667777776666 34444555777777777775 3443 4556666 67777777777776655555543 7
Q ss_pred CCCEEEccCCcCCcccchhhh----CC-CCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHh----hhcCce
Q 006657 298 SLEHLDLRSNNFISSIPTWLH----KF-TRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEK----LLRNLI 368 (636)
Q Consensus 298 ~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~----~~~L~~ 368 (636)
+|++|++++|.+++..+..+. .+ ++|++|++++|++++ ..+..+... ..+|++
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~------------------~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS------------------KSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG------------------SCHHHHHHHHTTSCTTCCE
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc------------------HHHHHHHHHHHhCCCceeE
Confidence 777777777777766555333 33 677777777776653 333333221 136666
Q ss_pred EecCCCcCcccC----ccccCCCC-CCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecc
Q 006657 369 LRLRSNKFDGQI----PAELCRLT-SLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGR 443 (636)
Q Consensus 369 L~L~~n~l~~~~----p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (636)
|++++|.+++.. +..+...+ +|++|++++|++++..+..+...-.
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~------------------------------ 192 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA------------------------------ 192 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH------------------------------
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH------------------------------
Confidence 666666666422 23334444 6777777777776655554433210
Q ss_pred cccccccc-ccccEEECcCCccCcc----CCccccc-ccCCCeEeCCCccCcCCCC----ccccCCCCCCEEeCCCCCCC
Q 006657 444 ELAYNTML-KLVRCMDLSGNNLSGD----IPEEMTN-LLALQSLNLSHNFLAGKIP----ENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 444 ~~~~~~~~-~~L~~L~Ls~N~l~g~----~p~~~~~-l~~L~~L~Ls~N~l~~~ip----~~~~~l~~L~~L~Ls~N~l~ 513 (636)
.. +.|++|||++|.+++. ++..+.. .++|++|+|++|++++..+ ..+..+++|++|++++|.+.
T Consensus 193 ------~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 193 ------SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp ------TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred ------hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 11 2367777777777653 3444444 3477777777777765433 23455677777777777744
Q ss_pred ccCc-------hhccCCCCCCeeeccCCcCccc
Q 006657 514 GRIP-------QSISSLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 514 ~~~p-------~~l~~l~~L~~L~ls~N~l~g~ 539 (636)
+..+ ..+..+++|++||+++|++.+.
T Consensus 267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3322 3455666777777777776654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=201.17 Aligned_cols=204 Identities=23% Similarity=0.218 Sum_probs=177.5
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccc
Q 006657 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENF 190 (636)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l 190 (636)
.+.+++++++++++++.++ .+|..+. +++++|++++|.+++..|..+.++++|++|++++|.+...+.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------- 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------- 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------
Confidence 4678899999999999998 5776664 799999999999998888899999999999999998865421
Q ss_pred ccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhc
Q 006657 191 SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLF 270 (636)
Q Consensus 191 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~ 270 (636)
...+++|++|++++|.++..+. .+..+++|++|++++|++++..+ ..+.++++|++|++++|+++ .+++..|.
T Consensus 73 --~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~~ 145 (290)
T 1p9a_G 73 --DGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELK-TLPPGLLT 145 (290)
T ss_dssp --CSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCC-CCCTTTTT
T ss_pred --CCCCCcCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCC-ccChhhcc
Confidence 3678999999999999997765 56789999999999999985444 67999999999999999998 56658889
Q ss_pred CCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 271 GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 271 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
.+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+++++++|++.
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9999999999999999666666788999999999999998 67778888889999999999875
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-23 Score=206.15 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=19.3
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCC
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAM 499 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l 499 (636)
|+.|++++|.+.+. +++|+.|+++.|.++|.+|.+++.+
T Consensus 207 L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 207 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 44455555544432 2345555555555555555555443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-24 Score=226.07 Aligned_cols=243 Identities=18% Similarity=0.227 Sum_probs=145.2
Q ss_pred ccCCCCCcEEEcccCCCCCCCC---hhhhcCCCCCcEEEccCC---cCcccCCccc-------cCCCCCCEEEccCCcCC
Q 006657 244 IANFSSLYTLDLSYNEFDNTLV---PSWLFGLSHLVFLDLGFN---SFGGPIPDGL-------QNLTSLEHLDLRSNNFI 310 (636)
Q Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~~n~l~ 310 (636)
+..+++|++|++++|.+++..+ ...+..+++|++|++++| ++++.+|..+ ..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3344455555555555442211 012445555555555553 2333344333 46666777777777666
Q ss_pred c----ccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhh---------hcCceEecCCCcCc
Q 006657 311 S----SIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKL---------LRNLILRLRSNKFD 377 (636)
Q Consensus 311 ~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~---------~~L~~L~L~~n~l~ 377 (636)
+ .+|..+..+++|++|++++|.+++..+. .++..+.. + ++|++|++++|+++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------------~l~~~l~~-l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--------------KIARALQE-LAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------------HHHHHHHH-HHHHHHHHTCCCCCEEECCSSCCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------------HHHHHHHH-HhhhhhcccCCCCcEEECCCCCCC
Confidence 5 3555666667777777666665422110 11122211 2 56777777777765
Q ss_pred -ccCc---cccCCCCCCCEEEccCccCccc-----cchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccc
Q 006657 378 -GQIP---AELCRLTSLHILDLSHNNFSGT-----LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYN 448 (636)
Q Consensus 378 -~~~p---~~l~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (636)
+.+| ..+..+++|++|++++|+++.. +|..+.
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--------------------------------------- 213 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--------------------------------------- 213 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG---------------------------------------
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh---------------------------------------
Confidence 3333 3555667777777777776621 121222
Q ss_pred cccccccEEECcCCccC----ccCCcccccccCCCeEeCCCccCcCC----CCccc--cCCCCCCEEeCCCCCCCc----
Q 006657 449 TMLKLVRCMDLSGNNLS----GDIPEEMTNLLALQSLNLSHNFLAGK----IPENV--GAMRSLESIDFSGNLLSG---- 514 (636)
Q Consensus 449 ~~~~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~--~~l~~L~~L~Ls~N~l~~---- 514 (636)
.+++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. +|..+ +.+++|++|+|++|++++
T Consensus 214 -~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 214 -YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp -GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred -cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 2334777888888775 56677777788888888888888765 45555 337888888888888886
Q ss_pred cCchhc-cCCCCCCeeeccCCcCcccCC
Q 006657 515 RIPQSI-SSLTFLSHLNLSDNNLTGKIP 541 (636)
Q Consensus 515 ~~p~~l-~~l~~L~~L~ls~N~l~g~ip 541 (636)
.+|..+ .++++|++|++++|++++..|
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477666 557888888888888876654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=206.08 Aligned_cols=229 Identities=21% Similarity=0.207 Sum_probs=156.8
Q ss_pred CCcEEEcccCCCCCCCChh--hhcCCCCCcEEEccCCcCcccCCccc--cCCCCCCEEEccCCcCCcccc----hhhhCC
Q 006657 249 SLYTLDLSYNEFDNTLVPS--WLFGLSHLVFLDLGFNSFGGPIPDGL--QNLTSLEHLDLRSNNFISSIP----TWLHKF 320 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~l~~l 320 (636)
.++.+.+.++.++...... .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3556666665553211100 11223557777777777777777666 677777777777777776444 334456
Q ss_pred CCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc--C--ccccCCCCCCCEEEcc
Q 006657 321 TRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ--I--PAELCRLTSLHILDLS 396 (636)
Q Consensus 321 ~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls 396 (636)
++|++|++++|++.+..+ ..+. .+++|++|++++|++.+. + +..+..+++|++|+++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~------------------~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSC------------------EQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp SCCCEEEEECCSSCCCCT------------------TSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred cCCCEEEeeCCCcchhhH------------------HHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 777777777776653222 2222 266777777777776542 2 2234678899999999
Q ss_pred CccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccc-
Q 006657 397 HNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNL- 475 (636)
Q Consensus 397 ~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l- 475 (636)
+|+++ .+|.....+ .+.+++|++|||++|++++.+|..+..+
T Consensus 206 ~N~l~-~l~~~~~~l------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 206 NTGME-TPTGVCAAL------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp SSCCC-CHHHHHHHH------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCC-chHHHHHHH------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 99987 333321111 1123448899999999998888888777
Q ss_pred --cCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcc
Q 006657 476 --LALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 476 --~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|+++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 7788775 8999999999999964 43 6788999999999999874
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-23 Score=215.08 Aligned_cols=231 Identities=19% Similarity=0.238 Sum_probs=134.8
Q ss_pred CCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCccc-CCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 248 SSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP-IPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
++++.|++++|.+.+..+ . +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~-~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA-E-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCC-S-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccch-h-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 334444444444433222 1 23344455555555444433 44444455555555555555554445555555555555
Q ss_pred EccCc-ccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCC-cCccc-CccccCCCC-CCCEEEccCc--cC
Q 006657 327 SLREN-RLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSN-KFDGQ-IPAELCRLT-SLHILDLSHN--NF 400 (636)
Q Consensus 327 ~L~~n-~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~Ls~N--~l 400 (636)
++++| .+++. .++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++| .+
T Consensus 148 ~L~~~~~l~~~-----------------~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 148 NLSGCSGFSEF-----------------ALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp ECTTCBSCCHH-----------------HHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred ECCCCCCCCHH-----------------HHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 55555 33310 1233333 2555666666666 55543 455566677 7888888887 44
Q ss_pred c-cccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCc-cCccCCcccccccCC
Q 006657 401 S-GTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN-LSGDIPEEMTNLLAL 478 (636)
Q Consensus 401 ~-~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~g~~p~~~~~l~~L 478 (636)
+ +.+|..+.++ ++|+.|++++|. +++..+..+.++++|
T Consensus 210 ~~~~l~~~~~~~----------------------------------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 210 QKSDLSTLVRRC----------------------------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CHHHHHHHHHHC----------------------------------------TTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CHHHHHHHHhhC----------------------------------------CCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 4 3444444433 337888888888 777777888888999
Q ss_pred CeEeCCCcc-CcCCCCccccCCCCCCEEeCCCCCCCccCchhccCC-CCCCeeeccCCcCcccCCC
Q 006657 479 QSLNLSHNF-LAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL-TFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 479 ~~L~Ls~N~-l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~ 542 (636)
++|++++|. ++......++.+++|++|++++| ++.. .+..+ ..++.|++++|++++..|.
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 999999985 33222235788899999999998 4432 23333 3477888999999988775
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=203.66 Aligned_cols=233 Identities=17% Similarity=0.193 Sum_probs=150.5
Q ss_pred CCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCCccc--cCCCCCcEEEcccCCCCCCCC---hh
Q 006657 195 GLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPELPI--ANFSSLYTLDLSYNEFDNTLV---PS 267 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~~l~~L~~L~Ls~n~l~~~~~---~~ 267 (636)
+...++.+.+.++.++.. .... ....+++|++|++++|.+.+..| ..+ ..+++|++|++++|.+++..+ ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGAL-RVLAYSRLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHH-HHHHHSCCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHH-HhcccCceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 334577788877766543 1111 12234679999999999988888 455 889999999999999886443 23
Q ss_pred hhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcc--cc--hhhhCCCCCCEEEccCcccccccCccceE
Q 006657 268 WLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISS--IP--TWLHKFTRLEYLSLRENRLQGMISSVLVV 343 (636)
Q Consensus 268 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p--~~l~~l~~L~~L~L~~n~l~~~~p~~L~~ 343 (636)
.+..+++|++|++++|++++..|..++.+++|++|++++|++.+. ++ ..+..+++|++|++++|+++
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------- 210 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--------- 210 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------
Confidence 445788899999999999887778888899999999999987653 22 22356778888888887775
Q ss_pred EEccCCCCccccch---HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCC
Q 006657 344 FDIGENGFSGNIPA---WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS 420 (636)
Q Consensus 344 L~l~~n~l~g~ip~---~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~ 420 (636)
.++. .+...+++|++|+|++|++++..|..+..+ ..
T Consensus 211 ----------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~------------------------~~------- 249 (310)
T 4glp_A 211 ----------TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC------------------------MW------- 249 (310)
T ss_dssp ----------CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC------------------------CC-------
T ss_pred ----------chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc------------------------cC-------
Confidence 2222 222234555555555555554444444333 11
Q ss_pred CccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCC
Q 006657 421 METDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR 500 (636)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~ 500 (636)
+++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..++
T Consensus 250 ------------------------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~ 294 (310)
T 4glp_A 250 ------------------------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELP 294 (310)
T ss_dssp ------------------------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCC
T ss_pred ------------------------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCC
Confidence 012455555555555 4455443 5667777777777643 33 45667
Q ss_pred CCCEEeCCCCCCCc
Q 006657 501 SLESIDFSGNLLSG 514 (636)
Q Consensus 501 ~L~~L~Ls~N~l~~ 514 (636)
+|+.|++++|+++.
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 77777777777653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-23 Score=215.71 Aligned_cols=267 Identities=22% Similarity=0.172 Sum_probs=189.9
Q ss_pred EEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCC---ccccCCC-CCcEEEcccCCCCCCCChhhhcCC----
Q 006657 201 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFS-SLYTLDLSYNEFDNTLVPSWLFGL---- 272 (636)
Q Consensus 201 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~l---- 272 (636)
.++++.|.+++.. +..+...++|++|++++|.+++..+. ..+.+++ +|++|++++|.+++..+ ..+..+
T Consensus 2 ~~~ls~n~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPV--EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHH--HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTS
T ss_pred ccccccccchHHH--HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhcc
Confidence 4678888888762 23455566799999999999753321 3467788 89999999999985544 556554
Q ss_pred -CCCcEEEccCCcCcccCCcccc----CC-CCCCEEEccCCcCCcccchhhh----C-CCCCCEEEccCcccccccCccc
Q 006657 273 -SHLVFLDLGFNSFGGPIPDGLQ----NL-TSLEHLDLRSNNFISSIPTWLH----K-FTRLEYLSLRENRLQGMISSVL 341 (636)
Q Consensus 273 -~~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~L~~n~l~~~~p~~L 341 (636)
++|++|++++|.+++..+..+. .+ ++|++|++++|++++..+..+. . .++|++|++++|++++..+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--- 155 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--- 155 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH---
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH---
Confidence 9999999999999977666443 44 8999999999999877765554 3 3689999999888774211
Q ss_pred eEEEccCCCCccccchHHHHhh-hcCceEecCCCcCcccCcccc----CCC-CCCCEEEccCccCccccchhhhhhhhhc
Q 006657 342 VVFDIGENGFSGNIPAWIGEKL-LRNLILRLRSNKFDGQIPAEL----CRL-TSLHILDLSHNNFSGTLPRCINNLTAMM 415 (636)
Q Consensus 342 ~~L~l~~n~l~g~ip~~~~~~~-~~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 415 (636)
..++..+.. . .+|++|+|++|++++..+..+ ... ++|++|++++|++++.....+...-.
T Consensus 156 -----------~~l~~~l~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-- 221 (362)
T 3goz_A 156 -----------DELIQILAA-IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS-- 221 (362)
T ss_dssp -----------HHHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--
T ss_pred -----------HHHHHHHhc-CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh--
Confidence 022333332 3 378888888888876665443 344 58999999999988643332221100
Q ss_pred cccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCC----cccccccCCCeEeCCCccCcCC
Q 006657 416 NQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIP----EEMTNLLALQSLNLSHNFLAGK 491 (636)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p----~~~~~l~~L~~L~Ls~N~l~~~ 491 (636)
...++|++|||++|.+++..+ ..+..+++|++|+|++|.+.+.
T Consensus 222 ---------------------------------~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 222 ---------------------------------SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp ---------------------------------HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred ---------------------------------cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 011348899999999986554 3356778999999999985533
Q ss_pred -------CCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 492 -------IPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 492 -------ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
++..+..+++|+.||+++|++....+..+
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 33467788999999999999987755444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-24 Score=225.38 Aligned_cols=241 Identities=22% Similarity=0.240 Sum_probs=173.6
Q ss_pred hCCCCCCCEEEeecCCCCCCCCC---ccccCCCCCcEEEcccCC---CCCCCCh------hhhcCCCCCcEEEccCCcCc
Q 006657 219 TNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLSYNE---FDNTLVP------SWLFGLSHLVFLDLGFNSFG 286 (636)
Q Consensus 219 ~~~l~~L~~L~L~~n~l~~~~p~---~~~~~l~~L~~L~Ls~n~---l~~~~~~------~~l~~l~~L~~L~L~~n~l~ 286 (636)
+..+++|++|++++|.+++..+. ..+..+++|++|+|++|. +++.+|. ..+..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34455555555555555432110 124456666666666643 3334442 12467888999999999888
Q ss_pred c----cCCccccCCCCCCEEEccCCcCCcccchhhhC----C---------CCCCEEEccCcccccccCccceEEEccCC
Q 006657 287 G----PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHK----F---------TRLEYLSLRENRLQGMISSVLVVFDIGEN 349 (636)
Q Consensus 287 ~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~----l---------~~L~~L~L~~n~l~~~~p~~L~~L~l~~n 349 (636)
+ .+|..+..+++|++|+|++|.+++..+..+.. + ++|++|++++|+++.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~-------------- 173 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-------------- 173 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------------
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--------------
Confidence 6 46777888999999999999987554444433 3 788888888887752
Q ss_pred CCccccc---hHHHHhhhcCceEecCCCcCc--c---cCccccCCCCCCCEEEccCccCc----cccchhhhhhhhhccc
Q 006657 350 GFSGNIP---AWIGEKLLRNLILRLRSNKFD--G---QIPAELCRLTSLHILDLSHNNFS----GTLPRCINNLTAMMNQ 417 (636)
Q Consensus 350 ~l~g~ip---~~~~~~~~~L~~L~L~~n~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~~ 417 (636)
+.+| ..+. .+++|+.|++++|+++ | ..|..+..+++|++|+|++|.++ +.+|..+..++
T Consensus 174 ---~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~----- 244 (386)
T 2ca6_A 174 ---GSMKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP----- 244 (386)
T ss_dssp ---GGHHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-----
T ss_pred ---HHHHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-----
Confidence 1334 3343 3789999999999988 3 34447889999999999999986 45555554443
Q ss_pred cCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCcc----CCccc--ccccCCCeEeCCCccCcC-
Q 006657 418 ENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD----IPEEM--TNLLALQSLNLSHNFLAG- 490 (636)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~----~p~~~--~~l~~L~~L~Ls~N~l~~- 490 (636)
+|++|+|++|.+++. +|..+ +.+++|++|+|++|.+++
T Consensus 245 -----------------------------------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 245 -----------------------------------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp -----------------------------------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred -----------------------------------CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 488999999999876 56666 349999999999999997
Q ss_pred ---CCCccc-cCCCCCCEEeCCCCCCCccCc
Q 006657 491 ---KIPENV-GAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 491 ---~ip~~~-~~l~~L~~L~Ls~N~l~~~~p 517 (636)
.+|..+ .++++|++|++++|++++..+
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 488877 668999999999999998774
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-23 Score=212.75 Aligned_cols=256 Identities=19% Similarity=0.206 Sum_probs=180.6
Q ss_pred CCcEEEccCCCCCCCCChhhhhCCC--CCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC
Q 006657 198 LLKHLDLTGVDLSTASDWFLVTNML--PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
.++.++++++.+.. ..+..+ ++++.|++++|.+.+..+ .+..+++|++|++++|.+++...+..+..+++|
T Consensus 48 ~~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCCH-----HHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 36677777666552 133334 678888888888876655 356788899999998888654233678888999
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccCC-cCCcc-cchhhhCCCCCCEEEccCc-ccccccCccceEEEccCCCCc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN-NFISS-IPTWLHKFTRLEYLSLREN-RLQGMISSVLVVFDIGENGFS 352 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~L~~L~l~~n~l~ 352 (636)
++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++.
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---------------- 184 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK---------------- 184 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH----------------
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH----------------
Confidence 99999999888778888888899999999998 67653 6667888889999988888 76632
Q ss_pred cccchHHHHhhh-cCceEecCCC--cCc-ccCccccCCCCCCCEEEccCcc-CccccchhhhhhhhhccccCCCcccccc
Q 006657 353 GNIPAWIGEKLL-RNLILRLRSN--KFD-GQIPAELCRLTSLHILDLSHNN-FSGTLPRCINNLTAMMNQENSMETDKEY 427 (636)
Q Consensus 353 g~ip~~~~~~~~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~~~~~~~~~~~~ 427 (636)
.++..+.. ++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+.++++
T Consensus 185 -~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~-------------- 248 (336)
T 2ast_B 185 -HVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY-------------- 248 (336)
T ss_dssp -HHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT--------------
T ss_pred -HHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC--------------
Confidence 24444443 77 8888888888 455 4566667778888888888887 66565655544433
Q ss_pred ccceeeceEEEEeeccccccccccccccEEECcCCc-cCccCCcccccccCCCeEeCCCccCcCCCCccccCC-CCCCEE
Q 006657 428 DTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN-LSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAM-RSLESI 505 (636)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l-~~L~~L 505 (636)
|++|++++|. ++......++++++|++|++++| ++.. .+..+ .+++.|
T Consensus 249 --------------------------L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L 298 (336)
T 2ast_B 249 --------------------------LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHL 298 (336)
T ss_dssp --------------------------CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTS
T ss_pred --------------------------CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcce
Confidence 7788888884 33222235777888888888888 4322 23333 246677
Q ss_pred eCCCCCCCccCchhccC
Q 006657 506 DFSGNLLSGRIPQSISS 522 (636)
Q Consensus 506 ~Ls~N~l~~~~p~~l~~ 522 (636)
++++|++++..|..+..
T Consensus 299 ~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 299 QINCSHFTTIARPTIGN 315 (336)
T ss_dssp EESCCCSCCTTCSSCSS
T ss_pred EEecccCccccCCcccc
Confidence 78888888888776553
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=190.85 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcC
Q 006657 60 NCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGF 139 (636)
Q Consensus 60 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~ 139 (636)
+||.|.|++|.. ..+.++++++. +. .+|..+. +++++|++++|.+++. .+..+..
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~------------------l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~ 57 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKS------------------LD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRG 57 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCC------------------CS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTT
T ss_pred cCCCCCceEcCC---CCeEEecCCCC------------------cc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcC
Confidence 588999999953 23456777652 22 4555443 5778888888887765 5566777
Q ss_pred CCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCC
Q 006657 140 MGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNP 179 (636)
Q Consensus 140 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~ 179 (636)
+++|++|++++|.+++..|..+.++++|++|++++|.+..
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc
Confidence 7777777777777776666666666666666666665543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-22 Score=195.54 Aligned_cols=210 Identities=23% Similarity=0.245 Sum_probs=145.9
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCcc
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSG 353 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g 353 (636)
..++++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 72 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------- 72 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence 4566777777666 4555443 56677777777766666656666666666666555544
Q ss_pred ccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceee
Q 006657 354 NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIE 433 (636)
Q Consensus 354 ~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 433 (636)
+..|..+..+++|++|++++|++++..+..+..+++
T Consensus 73 ------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------------- 108 (251)
T 3m19_A 73 ------------------------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ-------------------- 108 (251)
T ss_dssp ------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT--------------------
T ss_pred ------------------------ccCHhHhccCCcCCEEECCCCcccccChhHhcccCC--------------------
Confidence 344555677788888888888887655555554443
Q ss_pred ceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 434 LSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
|++|+|++|++++..+..+..+++|++|+|++|++++..+..|+.+++|++|+|++|+++
T Consensus 109 --------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 109 --------------------LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp --------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred --------------------CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 788888888888666677888999999999999999777778999999999999999999
Q ss_pred ccCchhccCCCCCCeeeccCCcCcccCCCCC-ccCCccc-----cccCCCCCCCCCCCCCCC
Q 006657 514 GRIPQSISSLTFLSHLNLSDNNLTGKIPLGT-QLQGFNA-----SCFAGNNLCGAPLPKNCT 569 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~~~~~~-----~~~~~n~lc~~~~~~~c~ 569 (636)
+..+..+..+++|++|++++|+++|..+... ...++.. ....++.+|+.|....|.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 230 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCS 230 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccC
Confidence 8888889999999999999999998743321 1122211 123345677777777776
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=195.19 Aligned_cols=195 Identities=25% Similarity=0.365 Sum_probs=169.0
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
..++++|++|++++|.++. +| .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+...+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~---------- 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVS---------- 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCG----------
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCch----------
Confidence 4568899999999999984 55 588899999999999999854 44 999999999999999886642
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 192 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
.+.++++|++|++++|.+++.+ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++ . +..
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~-~~-~-l~~ 171 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITN-IS--PLAGLTNLQYLSIGNAQVSD-LT-P-LAN 171 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCC-CG-G-GTT
T ss_pred hhcCCCCCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCc-Cc--cccCCCCccEEEccCCcCCC-Ch-h-hcC
Confidence 3788999999999999999875 37889999999999999985 44 38899999999999999984 44 3 889
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9999999999999986543 8899999999999999986653 8899999999999999874
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=195.98 Aligned_cols=192 Identities=23% Similarity=0.349 Sum_probs=117.7
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
+++|++|++++|.++. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|++++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~---------------- 99 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---------------- 99 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC----------------
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC----------------
Confidence 4445555555555542 23 34555555555555555553322 5555555555555555441
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
++ .+. .+++|+.|++++|++++ ++. +..+++|++|++++|++++..+ +..+
T Consensus 100 ---~~-~~~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l-------------------- 150 (308)
T 1h6u_A 100 ---VS-AIA-GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGL-------------------- 150 (308)
T ss_dssp ---CG-GGT-TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGC--------------------
T ss_pred ---ch-hhc-CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCC--------------------
Confidence 11 111 24555555666665554 222 6677777777777777764332 3332
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
++|+.|++++|++++. +. +..+++|+.|++++|++++..+ +..+++|++|++++|+
T Consensus 151 --------------------~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 151 --------------------TNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp --------------------TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred --------------------CCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 3377788888887743 33 7778888888888888875433 7778888888888888
Q ss_pred CCccCchhccCCCCCCeeeccCCcCcc
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
+++..| +..+++|++|++++|++++
T Consensus 207 l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 207 ISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcccc--ccCCCCCCEEEccCCeeec
Confidence 875443 7778888888888888865
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=187.76 Aligned_cols=198 Identities=18% Similarity=0.187 Sum_probs=160.5
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCc-cCCCCCccCcCCCCCCeEeccC-CCCCCcccccccccccccc
Q 006657 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAE-LTGMIPHQLGNLFNLQYLDLSI-DTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~~l~~l 193 (636)
++|++|++++|.+++. .+..++.+++|++|++++|. +++..+..|.++++|++|++++ |.+...+.. .+
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~--------~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD--------AL 101 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT--------SE
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH--------Hh
Confidence 3899999999999854 44478899999999999997 8766666889999999999998 888765422 26
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCC---EEEeecC-CCCCCCCCccccCCCCCc-EEEcccCCCCCCCChhh
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ---VLKLSAC-SLHNSLPELPIANFSSLY-TLDLSYNEFDNTLVPSW 268 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~ 268 (636)
.++++|++|++++|.+++.+. +..+++|+ +|++++| .+++ +|...+.++++|+ .|++++|.++ .+++..
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred CCCCCCCEEeCCCCCCccccc----cccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 788999999999999988764 55667777 9999999 8874 5546788999999 9999999998 777566
Q ss_pred hcCCCCCcEEEccCCc-CcccCCccccCC-CCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 269 LFGLSHLVFLDLGFNS-FGGPIPDGLQNL-TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 269 l~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
+.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++.
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 665 889999999995 886667778888 999999999999985 4433 67889999988763
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=189.24 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=60.6
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCc-CcccCCccccCCCCCCEEEccC-CcCCcccchhhhCCCCCCEE
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS-FGGPIPDGLQNLTSLEHLDLRS-NNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 326 (636)
+|++|++++|+++ .+++..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 6777777777776 4554667777777777777776 6655555677777777777777 77776555667777777777
Q ss_pred EccCcccc
Q 006657 327 SLRENRLQ 334 (636)
Q Consensus 327 ~L~~n~l~ 334 (636)
++++|+++
T Consensus 111 ~l~~n~l~ 118 (239)
T 2xwt_C 111 GIFNTGLK 118 (239)
T ss_dssp EEEEECCC
T ss_pred eCCCCCCc
Confidence 77777665
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-21 Score=207.41 Aligned_cols=206 Identities=23% Similarity=0.313 Sum_probs=163.1
Q ss_pred CCC-CCCCc-----ccccE-EeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCC
Q 006657 55 SWS-DGNCC-----TWAGV-VCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNN 127 (636)
Q Consensus 55 ~W~-~~~~c-----~w~gv-~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~ 127 (636)
+|. +.++| .|.|+ .|.. ++++.|+++++ .+.+ +|..+. ++|++|+|++|.
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n------------------~L~~-lp~~l~--~~L~~L~Ls~N~ 91 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRL------------------NLSS-LPDNLP--PQITVLEITQNA 91 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSS------------------CCSC-CCSCCC--TTCSEEECCSSC
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCC------------------CCCc-cCHhHc--CCCCEEECcCCC
Confidence 453 44567 79999 7863 57999999887 5555 777664 899999999999
Q ss_pred CCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCC
Q 006657 128 FENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGV 207 (636)
Q Consensus 128 l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n 207 (636)
++ .+| ..+++|++|++++|++++ +|. +.+ +|++|++++|.+..++. .+++|++|++++|
T Consensus 92 l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~------------~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 92 LI--SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE------------LPALLEYINADNN 150 (571)
T ss_dssp CS--CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC------------CCTTCCEEECCSS
T ss_pred Cc--ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC------------cCccccEEeCCCC
Confidence 99 477 568999999999999996 777 765 99999999998876421 5688999999999
Q ss_pred CCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCC-------cEEEc
Q 006657 208 DLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL-------VFLDL 280 (636)
Q Consensus 208 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L-------~~L~L 280 (636)
.+++.+. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+| . +.. +| ++|++
T Consensus 151 ~l~~lp~------~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~-~lp-~-~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 151 QLTMLPE------LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLE-SLP-A-VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp CCSCCCC------CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCS-SCC-C-CC----------CCEEEEC
T ss_pred ccCcCCC------cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCC-chh-h-HHH--hhhcccccceEEec
Confidence 9988764 46889999999999885 773 54 88999999999987 676 3 443 66 88888
Q ss_pred cCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCC
Q 006657 281 GFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFT 321 (636)
Q Consensus 281 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 321 (636)
++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 888888 5788787888888888888888888888776643
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=182.03 Aligned_cols=177 Identities=21% Similarity=0.247 Sum_probs=145.0
Q ss_pred EEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCc-cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCC
Q 006657 343 VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIP-AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM 421 (636)
Q Consensus 343 ~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~ 421 (636)
.+++++|.++ .+|..+ ...++.|++++|++++..| ..|..+++|++|++++|++++..+..|.++++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-------- 82 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-------- 82 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT--------
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC--------
Confidence 3444444444 566654 3457899999999997755 45789999999999999999777767766554
Q ss_pred ccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCC
Q 006657 422 ETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRS 501 (636)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~ 501 (636)
|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++
T Consensus 83 --------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 83 --------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp --------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred --------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 889999999999888888999999999999999999998999999999
Q ss_pred CCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccc-cCCCCCCCCC
Q 006657 502 LESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASC-FAGNNLCGAP 563 (636)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~-~~~n~lc~~~ 563 (636)
|++|+|++|++++..|..+..+++|++|++++|++.|.++..+...++.... +.++..|+.|
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P 193 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKP 193 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEES
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCC
Confidence 9999999999999999999999999999999999999998765555444332 3344556554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-20 Score=174.55 Aligned_cols=164 Identities=23% Similarity=0.289 Sum_probs=105.7
Q ss_pred CCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccccc
Q 006657 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLS 194 (636)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~ 194 (636)
.++|++|++++|.+++. .+..++.+++|++|++++|++++..+..+.++++|++|++++|.+...+.. .+.
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~ 97 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG--------VFD 97 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------TTT
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh--------Hhc
Confidence 35899999999999854 555678899999999999999866666678888888888888877654322 145
Q ss_pred CCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCC
Q 006657 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH 274 (636)
Q Consensus 195 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 274 (636)
++++|++|++++|.+++.+. ..+..+++|++|++++|.+++ ++...+..+++|+.|++++|.+.+ .+++
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~ 166 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC--------TCPG 166 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC--------CTTT
T ss_pred CccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec--------CCCC
Confidence 66667777777666665532 124455666666666666553 332345555566666666555432 2334
Q ss_pred CcEEEccCCcCcccCCccccCCCC
Q 006657 275 LVFLDLGFNSFGGPIPDGLQNLTS 298 (636)
Q Consensus 275 L~~L~L~~n~l~~~~p~~l~~l~~ 298 (636)
|++|+++.|+++|.+|.+++.++.
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHHHHhCCceeeccCccccC
Confidence 555555555555555555554443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=188.73 Aligned_cols=125 Identities=13% Similarity=0.081 Sum_probs=77.5
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE-E
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF-L 278 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~-L 278 (636)
++++.++++++.+|. .+ .+++++|+|++|+++ .+|...|.++++|++|+|++|++.+.+++..|.+++++++ +
T Consensus 12 ~~v~C~~~~Lt~iP~---~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS---DL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCCSCCT---TC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCCccCc---Cc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 566777777776654 22 346777777777776 4554566777777777777777665566556666666554 4
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccC
Q 006657 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330 (636)
Q Consensus 279 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 330 (636)
.+..|+++...|..|..+++|++|++++|++.+..+..+....++..+++.+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence 4455666655566666677777777777766654444444444455555543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=201.27 Aligned_cols=187 Identities=25% Similarity=0.344 Sum_probs=101.1
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+|+.|++++|.+++ +| ..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 55555555555553 44 222 245555555555555 344 234555555555555554 343 332 4555555
Q ss_pred cCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhh
Q 006657 329 RENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408 (636)
Q Consensus 329 ~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 408 (636)
++|+++ .+|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|. +
T Consensus 128 s~N~l~-------------------~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 128 DNNQLT-------------------MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp CSSCCS-------------------CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C
T ss_pred CCCcCC-------------------CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h
Confidence 544444 2343 15566666666666664 444 35566666666666664 443 3
Q ss_pred hhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCC-------CeE
Q 006657 409 NNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLAL-------QSL 481 (636)
Q Consensus 409 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L-------~~L 481 (636)
. + +|+.|+|++|+|+ .+|. +.. +| +.|
T Consensus 179 ~--~----------------------------------------~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L 212 (571)
T 3cvr_A 179 P--E----------------------------------------SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFF 212 (571)
T ss_dssp C--T----------------------------------------TCCEEECCSSCCS-SCCC-CC----------CCEEE
T ss_pred h--C----------------------------------------CCCEEECcCCCCC-chhh-HHH--hhhcccccceEE
Confidence 2 1 2566666666666 5555 433 55 666
Q ss_pred eCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCC
Q 006657 482 NLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL 523 (636)
Q Consensus 482 ~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 523 (636)
+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 213 ~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66666666 456656666666666666666666666655543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=186.94 Aligned_cols=135 Identities=13% Similarity=0.036 Sum_probs=65.8
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcE-EEcccCCCCCCCChhhhcCCCCC
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT-LDLSYNEFDNTLVPSWLFGLSHL 275 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~l~~l~~L 275 (636)
+++++|+|++|+++..+. ..+.++++|++|+|++|++.+.+|...|.++++++. +.++.|+++ .+++..|..+++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCCSEECT--TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTC
T ss_pred CCCCEEEccCCcCCCcCH--HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccc
Confidence 345555666555554432 134555556666666555554455444555555443 344445554 3443555555556
Q ss_pred cEEEccCCcCcccCCccccCCCCCCEEEccC-CcCCcccchhhhCCC-CCCEEEccCcccc
Q 006657 276 VFLDLGFNSFGGPIPDGLQNLTSLEHLDLRS-NNFISSIPTWLHKFT-RLEYLSLRENRLQ 334 (636)
Q Consensus 276 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~L~~n~l~ 334 (636)
++|++++|++++..+..+....++..+++.+ +++....+..|..+. .+++|++++|+++
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 6666655555544444444444555555543 333322223333332 3444444444443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-20 Score=177.67 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=138.6
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcc
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~ 423 (636)
++++++.++ .+|..+ .++++.|++++|++++..+..|..+++|++|++++|++++..|..|.++++
T Consensus 16 v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~---------- 81 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS---------- 81 (220)
T ss_dssp EECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS----------
T ss_pred EEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC----------
Confidence 344444444 666654 368999999999999877778999999999999999999887887776655
Q ss_pred ccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCC
Q 006657 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503 (636)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~ 503 (636)
|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+
T Consensus 82 ------------------------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 82 ------------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp ------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ------------------------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 88999999999966666789999999999999999999899999999999
Q ss_pred EEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCcc
Q 006657 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFN 550 (636)
Q Consensus 504 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~ 550 (636)
+|+|++|++++..+..+..+++|++|++++|++.|.++..+...++.
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~ 178 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLH 178 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHH
Confidence 99999999998888889999999999999999999887654443333
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=172.15 Aligned_cols=83 Identities=30% Similarity=0.287 Sum_probs=33.7
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEc
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSL 328 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 328 (636)
+|++|++++|+++ .+++..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 3444444444443 222233344444444444444444333333344444444444444444333333344444444444
Q ss_pred cCcc
Q 006657 329 RENR 332 (636)
Q Consensus 329 ~~n~ 332 (636)
++|+
T Consensus 108 ~~N~ 111 (208)
T 2o6s_A 108 NTNQ 111 (208)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 4433
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=164.62 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=101.6
Q ss_pred CCCCCCCCcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCC
Q 006657 54 ASWSDGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQI 133 (636)
Q Consensus 54 ~~W~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~i 133 (636)
..|.+...|.|.+|.|+.. -.+.+|..+. ++|++|+|++|.+++. .
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~-------------------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~ 56 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK-------------------------------RHASVPAGIP--TNAQILYLHDNQITKL-E 56 (229)
T ss_dssp CCCCTTCEEETTEEECTTS-------------------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-C
T ss_pred ccCCCCCEEeCCEeEccCC-------------------------------CcCccCCCCC--CCCCEEEcCCCccCcc-C
Confidence 3455778899999999641 1234454443 7899999999999875 6
Q ss_pred chhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCC
Q 006657 134 PVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTAS 213 (636)
Q Consensus 134 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~ 213 (636)
|..+..+++|++|++++|++....+..+..+++|++|++++|++...+... +..+++|++|++++|.++..|
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~lp 128 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--------FDRLVHLKELFMCCNKLTELP 128 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCSCC
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH--------hCcchhhCeEeccCCcccccC
Confidence 788888999999999999987555566788888888888888776543221 345555555555555555443
Q ss_pred ChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 214 DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 214 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
. .+..+++|++|++++|++++ ++...+..+++|+.|++++|.+.
T Consensus 129 ~---~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 129 R---GIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp T---TGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBC
T ss_pred c---ccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCcc
Confidence 2 23444444444444444442 22133444444444444444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=167.24 Aligned_cols=154 Identities=22% Similarity=0.258 Sum_probs=132.6
Q ss_pred EEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCcc
Q 006657 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMET 423 (636)
Q Consensus 344 L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~ 423 (636)
++.+++.+. .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..++.
T Consensus 24 v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~---------- 89 (229)
T 3e6j_A 24 VDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---------- 89 (229)
T ss_dssp EECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------
T ss_pred eEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC----------
Confidence 444444443 677654 378999999999999988999999999999999999997555555555544
Q ss_pred ccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCC
Q 006657 424 DKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLE 503 (636)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~ 503 (636)
|++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+
T Consensus 90 ------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 90 ------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT 138 (229)
T ss_dssp ------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCS
T ss_pred ------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCC
Confidence 899999999999777778899999999999999999 8899999999999
Q ss_pred EEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 504 SIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 504 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
+|+|++|++++..+..+..+++|++|++++|++.|.++.
T Consensus 139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 999999999987778899999999999999999998873
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=172.21 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=46.5
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccC
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSD 533 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 533 (636)
|+.|++++|++++. ..++.+++|++|++++|++++..| +..+++|+.|++++|++++ +|. +..+++|++|++++
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFS 209 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEE
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcC
Confidence 55555555555533 445566666666666666664433 5666666666666666664 332 56666666666666
Q ss_pred CcCcc
Q 006657 534 NNLTG 538 (636)
Q Consensus 534 N~l~g 538 (636)
|+++.
T Consensus 210 n~i~~ 214 (291)
T 1h6t_A 210 QECLN 214 (291)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 66654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=189.73 Aligned_cols=173 Identities=27% Similarity=0.350 Sum_probs=110.3
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccc
Q 006657 112 LLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFS 191 (636)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~ 191 (636)
+..+++|++|++++|.+.. +| .+..+++|++|+|++|++.+..| +..+++|++|+|++|.+...+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---------- 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS---------- 103 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT----------
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh----------
Confidence 4567788888888888773 44 46778888888888888775443 777788888888877765431
Q ss_pred cccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcC
Q 006657 192 WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFG 271 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 271 (636)
.+..+++|++|+|++|.+++.+ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+ +++ +..
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~ 173 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD-IVP--LAG 173 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCC-CGG--GTT
T ss_pred hhccCCCCCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCC-chh--hcc
Confidence 2566777777777777766653 345566666666666666542 245566666666666666653 221 555
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCc
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFIS 311 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 311 (636)
+++|++|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 174 l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66666666666666542 235556666666666665553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=181.13 Aligned_cols=140 Identities=23% Similarity=0.199 Sum_probs=104.3
Q ss_pred hhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------------------- 113 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA----------------------------- 113 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-----------------------------
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC-----------------------------
Confidence 444555555555555455566777888888888888887655555555444
Q ss_pred cccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccc---cCCCCCCEEeCCCCCCCccCchh
Q 006657 443 RELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENV---GAMRSLESIDFSGNLLSGRIPQS 519 (636)
Q Consensus 443 ~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~---~~l~~L~~L~Ls~N~l~~~~p~~ 519 (636)
|++|+|++|++++..|..|..+++|++|+|++|++++..+..| ..+++|+.|||++|++++..+..
T Consensus 114 -----------L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 114 -----------LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp -----------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred -----------CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 7888888888887778888899999999999999985444444 56899999999999999777677
Q ss_pred ccCCCC--CCeeeccCCcCcccCCC
Q 006657 520 ISSLTF--LSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 520 l~~l~~--L~~L~ls~N~l~g~ip~ 542 (636)
+..++. ++.|++++|++.|.+..
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEECCHHH
T ss_pred hhhccHhhcceEEecCCCccCCcCc
Confidence 887776 48899999999987753
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=163.64 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=128.4
Q ss_pred ceEecCCCcCcccCccccCCCCCCCEEEccCccCccccch-hhhhhhhhccccCCCccccccccceeeceEEEEeecccc
Q 006657 367 LILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPR-CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGREL 445 (636)
Q Consensus 367 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (636)
+.+++++|+++ .+|..+.. ++++|++++|++++..+. .+..++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~--------------------------------- 54 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLP--------------------------------- 54 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCT---------------------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCC---------------------------------
Confidence 57788888885 66766543 899999999999865554 355444
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 525 (636)
+|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++.+|..+..+++
T Consensus 55 -------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 55 -------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp -------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred -------CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 3889999999999888999999999999999999999888888999999999999999999999999999999
Q ss_pred CCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCCC
Q 006657 526 LSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAPL 564 (636)
Q Consensus 526 L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~~ 564 (636)
|++|++++|+++|.++..+...++....+.++ ..|+.|.
T Consensus 128 L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99999999999999987655555555555555 6676553
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=168.64 Aligned_cols=172 Identities=25% Similarity=0.317 Sum_probs=100.4
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +.++++|++|++++|.+... +.
T Consensus 43 ~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~----------~~ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL----------SS 107 (291)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG----------GG
T ss_pred hhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC----------hh
Confidence 456667777777776663 33 35666677777777776664332 66666666666666655432 11
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+.++++|++|++++|.+++. + .+..+++|+.|++++|.+++. ..+..+
T Consensus 108 l~~l~~L~~L~L~~n~i~~~---------------------------~--~l~~l~~L~~L~l~~n~l~~~---~~l~~l 155 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI---------------------------N--GLVHLPQLESLYLGNNKITDI---TVLSRL 155 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC---------------------------G--GGGGCTTCCEEECCSSCCCCC---GGGGGC
T ss_pred hccCCCCCEEECCCCcCCCC---------------------------h--hhcCCCCCCEEEccCCcCCcc---hhhccC
Confidence 44445555555555444443 2 345555566666666655432 345566
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
++|++|++++|++++..| +..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus 156 ~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 666666666666664433 6666667777777766664 33 36666777777777776653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-21 Score=210.91 Aligned_cols=86 Identities=29% Similarity=0.361 Sum_probs=59.5
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccC-chhccCCCCCCeeecc
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRI-PQSISSLTFLSHLNLS 532 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls 532 (636)
|+.|+|++|+++ .+|..++++++|++|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+..+++|++|+++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 666777777776 666677777777777777777764 55 5677777777777777777665 6667777777777777
Q ss_pred CCcCcccCCC
Q 006657 533 DNNLTGKIPL 542 (636)
Q Consensus 533 ~N~l~g~ip~ 542 (636)
+|++++..|.
T Consensus 542 ~N~l~~~~~~ 551 (567)
T 1dce_A 542 GNSLCQEEGI 551 (567)
T ss_dssp TSGGGGSSSC
T ss_pred CCcCCCCccH
Confidence 7777665553
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-19 Score=204.92 Aligned_cols=261 Identities=17% Similarity=0.129 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHhhcCCCC-CCCCCCCC--CCCCcccccEEeCCCCCcEEEEEcCCCCCCCCCCccccccCCCCCccee
Q 006657 30 GCIQSERKALLRFKQDLKDP-ANRLASWS--DGNCCTWAGVVCNDSTGRVLELRLGNPFLHDDEPFWLEDYDDETSKLIG 106 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~-~~~l~~W~--~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g 106 (636)
+..+.++++|+++..+...+ ...-..|. ....+.|.++.++. +++++++|..+.+..
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~------------------ 187 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE------------------ 187 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc------------------
Confidence 34566889999998877321 22334575 34567899998864 789999998764332
Q ss_pred ecCccccCCCCCCEE-----eCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 107 KINPSLLDLKHLVYL-----DLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 107 ~i~~~l~~l~~L~~L-----~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
++..+.....|+.+ +++.|.+. ..|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+..++
T Consensus 188 -~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp 263 (727)
T 4b8c_D 188 -ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELP 263 (727)
T ss_dssp -------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCC
T ss_pred -chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccC
Confidence 22222222222222 22223332 24555666777777777777766 56666667777777777777665432
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
. .+.++++|++|+|++|.++..|. .+..+++|++|+|++|.++ .+| ..++++++|+.|+|++|.++
T Consensus 264 ~---------~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 264 A---------EIKNLSNLRVLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVT-TLP-WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp G---------GGGGGTTCCEEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCC-CCC-SSTTSCTTCCCEECTTSCCC
T ss_pred h---------hhhCCCCCCEEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCC-ccC-hhhhcCCCccEEeCCCCccC
Confidence 1 15666777777777777775544 4566777888888888776 677 45788888888888888887
Q ss_pred CCCChhhhcCCC-CCcEEEccCCcCcccCCccccCCCCCCEEEccCC--------cCCcccchhhhCCCCCCEEEccCcc
Q 006657 262 NTLVPSWLFGLS-HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN--------NFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 262 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
+.+| ..+..+. .+..+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..++...+++|.
T Consensus 330 ~~~p-~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 330 KQFL-KILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp SHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------------------C
T ss_pred CCCh-HHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence 6555 5554332 1234677888888777653 445555555 3333333444555666667777776
Q ss_pred ccc
Q 006657 333 LQG 335 (636)
Q Consensus 333 l~~ 335 (636)
+.+
T Consensus 403 l~~ 405 (727)
T 4b8c_D 403 LCQ 405 (727)
T ss_dssp CCG
T ss_pred ccc
Confidence 653
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=189.79 Aligned_cols=148 Identities=25% Similarity=0.273 Sum_probs=83.2
Q ss_pred CCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEc
Q 006657 225 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304 (636)
Q Consensus 225 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 304 (636)
+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++ .+..+++|++|+|++|++++..| +..+++|+.|+|
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 3334444444443222 445566666777766665 232 35666667777777666664433 666666677777
Q ss_pred cCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcccc
Q 006657 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAEL 384 (636)
Q Consensus 305 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l 384 (636)
++|.+.+ +| .+..+++|++|+|++|++.+ ++. +. .+++|+.|+|++|.+++. ..+
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-------------------l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l 149 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISD-------------------ING-LV-HLPQLESLYLGNNKITDI--TVL 149 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-------------------CGG-GG-GCTTCSEEECCSSCCCCC--GGG
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-------------------Ccc-cc-CCCccCEEECCCCccCCc--hhh
Confidence 6666654 22 45666666666666666552 221 22 255666666666666543 445
Q ss_pred CCCCCCCEEEccCccCccccc
Q 006657 385 CRLTSLHILDLSHNNFSGTLP 405 (636)
Q Consensus 385 ~~l~~L~~L~Ls~N~l~~~~p 405 (636)
..+++|+.|+|++|++++..|
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG
T ss_pred cccCCCCEEECcCCcCCCchh
Confidence 566666666666666654433
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=160.20 Aligned_cols=158 Identities=15% Similarity=0.186 Sum_probs=131.9
Q ss_pred CCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc
Q 006657 299 LEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG 378 (636)
Q Consensus 299 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~ 378 (636)
-+++++++|.++ .+|..+. +.+++|++++|++++. .|...+..+++|+.|++++|.+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~------------------~~~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVL------------------EATGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEE------------------CCCCCGGGCTTCCEEECCSSCCCE
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCcc------------------CchhhhccCCCCCEEECCCCcCCE
Confidence 358888888887 4565443 4567777777777633 232222348999999999999998
Q ss_pred cCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEE
Q 006657 379 QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMD 458 (636)
Q Consensus 379 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 458 (636)
..+..|..+++|++|++++|++++..|..|.++++ |++|+
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~----------------------------------------L~~L~ 111 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES----------------------------------------LKTLM 111 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS----------------------------------------CCEEE
T ss_pred ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC----------------------------------------CCEEE
Confidence 88889999999999999999999877776766554 88999
Q ss_pred CcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 459 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+.+..+
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99999999989999999999999999999999889999999999999999999987654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-20 Score=207.09 Aligned_cols=202 Identities=21% Similarity=0.209 Sum_probs=143.7
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCc-------------CCcccchhhhCCCCCCEEE-ccCccccccc
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN-------------FISSIPTWLHKFTRLEYLS-LRENRLQGMI 337 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~ 337 (636)
+++|+.|+|++|+++ .+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 334444444444443 334444444444444443332 4566777788888888887 6666554
Q ss_pred CccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccc
Q 006657 338 SSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQ 417 (636)
Q Consensus 338 p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~ 417 (636)
.+..+.+++|.+.+ +| ...|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..++++++
T Consensus 424 --~L~~l~l~~n~i~~-l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~---- 487 (567)
T 1dce_A 424 --DLRSKFLLENSVLK-ME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC---- 487 (567)
T ss_dssp --HHHHHHHHHHHHHH-HH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT----
T ss_pred --hhhhhhhhcccccc-cC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC----
Confidence 22233333333321 11 2368899999999986 676 899999999999999998 78887776655
Q ss_pred cCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCC-Cccc
Q 006657 418 ENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI-PENV 496 (636)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~i-p~~~ 496 (636)
|+.|+|++|++++ +| .++++++|++|+|++|++++.+ |..+
T Consensus 488 ------------------------------------L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 488 ------------------------------------LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp ------------------------------------CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred ------------------------------------CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 8899999999996 67 8999999999999999999887 9999
Q ss_pred cCCCCCCEEeCCCCCCCccCch---hccCCCCCCeeec
Q 006657 497 GAMRSLESIDFSGNLLSGRIPQ---SISSLTFLSHLNL 531 (636)
Q Consensus 497 ~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~l 531 (636)
+.+++|+.|+|++|++++.+|. .+..+++|+.||+
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999999999977553 2344788998875
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=154.20 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=77.7
Q ss_pred CCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCE
Q 006657 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEH 301 (636)
Q Consensus 222 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 301 (636)
+++|++|+|++|++++..| ..+.++++|++|+|++|.++ .+++..|.++++|++|+|++|++++..|..|..+++|++
T Consensus 55 l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp CTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 3444444444444443334 45666677777777777776 555566777777888888888887777777778888888
Q ss_pred EEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 302 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|+|++|++++..+..|..+++|++|++++|++.
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888888776667777888888888888765
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-18 Score=192.44 Aligned_cols=190 Identities=18% Similarity=0.195 Sum_probs=119.2
Q ss_pred EcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccc
Q 006657 254 DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333 (636)
Q Consensus 254 ~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 333 (636)
+++.|.+. +++..+..++.|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|++
T Consensus 207 ~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred ccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 33344442 44477888899999999999987 67777888999999999999988 7888888999999999888887
Q ss_pred ccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhh
Q 006657 334 QGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTA 413 (636)
Q Consensus 334 ~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 413 (636)
+ .+|..++. +++|++|+|++|.++ .+|..|+.+++|++|+|++|++++.+|..+..+..
T Consensus 283 ~-------------------~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 341 (727)
T 4b8c_D 283 T-------------------SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341 (727)
T ss_dssp S-------------------SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH
T ss_pred C-------------------ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch
Confidence 7 56666664 889999999999987 78888999999999999999999999988876543
Q ss_pred hccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCc-------
Q 006657 414 MMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHN------- 486 (636)
Q Consensus 414 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N------- 486 (636)
. ...++|++|.++|.+|.. |+.|++++|
T Consensus 342 ~---------------------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~ 376 (727)
T 4b8c_D 342 T---------------------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREY 376 (727)
T ss_dssp H---------------------------------------HHHHHHHHCCCCCCCCCC----------------------
T ss_pred h---------------------------------------hhHHhhccCcccCcCccc------cceeEeeccccccccc
Confidence 2 223678889888888864 445666666
Q ss_pred -cCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 487 -FLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 487 -~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
.+.+..+..+..+..++...+++|.+.
T Consensus 377 ~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 377 DSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------CCC
T ss_pred CCccccccchhhcccccceeeeeccccc
Confidence 344444444556666677777777765
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=170.13 Aligned_cols=157 Identities=24% Similarity=0.242 Sum_probs=87.1
Q ss_pred CCCEEEeecCCCCCCCCCcccc-CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEE
Q 006657 224 SLQVLKLSACSLHNSLPELPIA-NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302 (636)
Q Consensus 224 ~L~~L~L~~n~l~~~~p~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 302 (636)
.++.|+|++|++++..+ ..+. ++++|+.|+|++|+++ .+++..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 35555555555553322 3344 5566666666666665 3333555666666666666666655444455666666666
Q ss_pred EccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHH---HhhhcCceEecCCCcCccc
Q 006657 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIG---EKLLRNLILRLRSNKFDGQ 379 (636)
Q Consensus 303 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~---~~~~~L~~L~L~~n~l~~~ 379 (636)
+|++|++++..|..|..+++|++|+|++|+++ .+|..++ ..+++|+.|+|++|++++.
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-------------------RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-------------------SCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCC-------------------eeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 66666666555555666666666666666555 2333221 1255566666666666544
Q ss_pred CccccCCCCC--CCEEEccCccCc
Q 006657 380 IPAELCRLTS--LHILDLSHNNFS 401 (636)
Q Consensus 380 ~p~~l~~l~~--L~~L~Ls~N~l~ 401 (636)
.+..+..++. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 3344555554 366777777765
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=153.20 Aligned_cols=153 Identities=19% Similarity=0.262 Sum_probs=106.8
Q ss_pred cCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhh
Q 006657 138 GFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFL 217 (636)
Q Consensus 138 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 217 (636)
+.+++|++|++++|.+. .+| .+..+++|++|++++|. ++..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~--------------------------------~~~~~---- 82 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH--------------------------------ATNYN---- 82 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC--------------------------------CSCCG----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC--------------------------------CCcch----
Confidence 44556666666666665 444 45555555555555553 33222
Q ss_pred hhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCc-CcccCCccccCC
Q 006657 218 VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS-FGGPIPDGLQNL 296 (636)
Q Consensus 218 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l 296 (636)
.+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|. ++ .+| .+..+
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l 158 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAIT-DIM-PLKTL 158 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCC-CCG-GGGGC
T ss_pred hhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCcc-ccH-hhcCC
Confidence 35567777777777777776555 567888888888888888875455 778888889999999887 54 455 68888
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 159 ~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 159 PELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 899999999998875 33 6788889999999888875
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=152.87 Aligned_cols=140 Identities=24% Similarity=0.300 Sum_probs=119.3
Q ss_pred ceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccc
Q 006657 367 LILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA 446 (636)
Q Consensus 367 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (636)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..+.+++.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~--------------------------------- 55 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKH--------------------------------- 55 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTT---------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccC---------------------------------
Confidence 46788888877 5666553 58999999999998 67766665544
Q ss_pred cccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCC
Q 006657 447 YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFL 526 (636)
Q Consensus 447 ~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 526 (636)
|+.|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 56 -------L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 56 -------LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp -------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred -------CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence 8899999999998888899999999999999999998888899999999999999999997777789999999
Q ss_pred CeeeccCCcCcccCCCCCccCCcc
Q 006657 527 SHLNLSDNNLTGKIPLGTQLQGFN 550 (636)
Q Consensus 527 ~~L~ls~N~l~g~ip~~~~~~~~~ 550 (636)
++|++++|++.|.+...+...++.
T Consensus 129 ~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 129 SHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp CEEECCSSCEECSGGGHHHHHHHH
T ss_pred cEEEeCCCCeecCCcCHHHHHHHH
Confidence 999999999999887655444443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=150.41 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=113.8
Q ss_pred CCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCC
Q 006657 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSL 299 (636)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 299 (636)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|++++..|..++.+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~--~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHAT--NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCS--CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCC--cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 34567777777777776 455 4677778888888888654 23 467778888888888888887777788888888
Q ss_pred CEEEccCCcCCcccchhhhCCCCCCEEEccCcc-cccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcc
Q 006657 300 EHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR-LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDG 378 (636)
Q Consensus 300 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~ 378 (636)
++|++++|++++..|..+..+++|++|++++|+ ++ .+| .+. .+++|+.|++++|.+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-------------------~~~-~l~-~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-------------------DIM-PLK-TLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-------------------CCG-GGG-GCSSCCEEECTTBCCCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-------------------ccH-hhc-CCCCCCEEECCCCCCcC
Confidence 888888888887778888888888888888886 54 344 233 37888888888888875
Q ss_pred cCccccCCCCCCCEEEccCccCcc
Q 006657 379 QIPAELCRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 379 ~~p~~l~~l~~L~~L~Ls~N~l~~ 402 (636)
++ .+..+++|+.|++++|++.+
T Consensus 174 -~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 -YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CT-TGGGCSSCCEEEECBC----
T ss_pred -hH-HhccCCCCCEEEeeCcccCC
Confidence 33 67788899999999998763
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-17 Score=163.88 Aligned_cols=82 Identities=27% Similarity=0.353 Sum_probs=55.2
Q ss_pred CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCE
Q 006657 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEY 325 (636)
Q Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 325 (636)
++.+++.++++.|.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 34456666777777652 22 3556677777777777776 344 56777777777777777775443 777777777
Q ss_pred EEccCcccc
Q 006657 326 LSLRENRLQ 334 (636)
Q Consensus 326 L~L~~n~l~ 334 (636)
|++++|+++
T Consensus 90 L~L~~N~l~ 98 (263)
T 1xeu_A 90 LSVNRNRLK 98 (263)
T ss_dssp EECCSSCCS
T ss_pred EECCCCccC
Confidence 777777765
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-17 Score=160.32 Aligned_cols=170 Identities=19% Similarity=0.243 Sum_probs=91.2
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
++.+++.+++++|.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+...+ .+
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~----------~l 81 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLS----------PL 81 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG----------GG
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCCh----------hh
Confidence 35556666777777763 44 4566777777777777776 344 5666677777777766654431 04
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
.++++|++|++++|.+++.+.. .. ++|++|++++|++++ + ..+..++
T Consensus 82 ~~l~~L~~L~L~~N~l~~l~~~----~~-~~L~~L~L~~N~l~~-~---------------------------~~l~~l~ 128 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKNLNGI----PS-ACLSRLFLDNNELRD-T---------------------------DSLIHLK 128 (263)
T ss_dssp TTCSSCCEEECCSSCCSCCTTC----CC-SSCCEEECCSSCCSB-S---------------------------GGGTTCT
T ss_pred ccCCCCCEEECCCCccCCcCcc----cc-CcccEEEccCCccCC-C---------------------------hhhcCcc
Confidence 4555555555555555544321 11 444444444444442 1 2244455
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
+|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|++|++++|++.+
T Consensus 129 ~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 555555555555432 2 344555555555555555443 334555555555555555543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=150.93 Aligned_cols=155 Identities=21% Similarity=0.288 Sum_probs=122.3
Q ss_pred EEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCcc-ccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCC
Q 006657 343 VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPA-ELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM 421 (636)
Q Consensus 343 ~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~ 421 (636)
.+++++|.+. .+|..+. .+++.|++++|++++..+. .+..+++|++|++++|++++..|..|.++++
T Consensus 12 ~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------- 79 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------- 79 (192)
T ss_dssp EEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT--------
T ss_pred EEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc--------
Confidence 4445555553 6776543 3899999999999876664 4889999999999999999888888776655
Q ss_pred ccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCC
Q 006657 422 ETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRS 501 (636)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~ 501 (636)
|++|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++
T Consensus 80 --------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 80 --------------------------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp --------------------------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred --------------------------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 889999999999988888999999999999999999999999999999
Q ss_pred CCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCC
Q 006657 502 LESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
|++|++++|.+.+..+-... ...++...+..+...|..|.
T Consensus 128 L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 128 LTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSST
T ss_pred CCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCCh
Confidence 99999999999987652110 01133334555666666664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-17 Score=167.94 Aligned_cols=220 Identities=13% Similarity=0.018 Sum_probs=128.0
Q ss_pred CCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcC----CcccchhhhCCCC
Q 006657 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF----ISSIPTWLHKFTR 322 (636)
Q Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~ 322 (636)
+++|+.|++.. .++ .++..+|.++++|+++++++|.+....+..|.++.++..+....+.. .......|.++..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77777777776 555 56656777777777777777777655566666666666655544211 1112223444444
Q ss_pred CC-EEEccCcccccccCccceEEEccCCCCccccchHHHHh---hhcCceEecCCCcCcccCccccCCCCCCCEEEccCc
Q 006657 323 LE-YLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEK---LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHN 398 (636)
Q Consensus 323 L~-~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~---~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 398 (636)
|+ .+.+... +.++..+... ..++..+.+.++-...........+++|+.+++++|
T Consensus 178 L~~~i~~~~~---------------------~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 178 LETTIQVGAM---------------------GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp CEEEEEECTT---------------------CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB
T ss_pred cceeEEecCC---------------------CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC
Confidence 44 2332221 1333333321 233444444433111111111112567777777777
Q ss_pred cCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCC
Q 006657 399 NFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLAL 478 (636)
Q Consensus 399 ~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L 478 (636)
+++...+..|.+|++ |+.++|.+| ++..-+..|.++++|
T Consensus 237 ~i~~I~~~aF~~~~~----------------------------------------L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 237 NATTIPDFTFAQKKY----------------------------------------LLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp CCCEECTTTTTTCTT----------------------------------------CCEEECCTT-CCEECTTTTTTCTTC
T ss_pred CcceecHhhhhCCCC----------------------------------------CCEEECCcc-cceehHHHhhCChhc
Confidence 776443445555544 667777776 664555667788888
Q ss_pred C-eEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeec
Q 006657 479 Q-SLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNL 531 (636)
Q Consensus 479 ~-~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 531 (636)
+ .+++.+ .++..-+..|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7 888877 666555677888888888888888887666677888888877753
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=139.24 Aligned_cols=134 Identities=20% Similarity=0.206 Sum_probs=110.3
Q ss_pred CceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccc
Q 006657 366 NLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGREL 445 (636)
Q Consensus 366 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (636)
.+.+++++|+++ .+|..+. ++|++|++++|++++..+..+.+++.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~-------------------------------- 53 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQ-------------------------------- 53 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTT--------------------------------
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCccc--------------------------------
Confidence 456777777776 4554433 68999999999988655555555443
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 525 (636)
|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 54 --------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 125 (177)
T 2o6r_A 54 --------LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125 (177)
T ss_dssp --------CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred --------ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc
Confidence 889999999999777777899999999999999999877777899999999999999999776667788999
Q ss_pred CCeeeccCCcCcccCCC
Q 006657 526 LSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 526 L~~L~ls~N~l~g~ip~ 542 (636)
|++|++++|++.|.+|.
T Consensus 126 L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 126 LQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CCEEECCSSCBCCCHHH
T ss_pred cCEEEecCCCeeccCcc
Confidence 99999999999998874
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-16 Score=141.09 Aligned_cols=132 Identities=22% Similarity=0.204 Sum_probs=96.6
Q ss_pred hcCceEecCCCcCc-ccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 364 LRNLILRLRSNKFD-GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 364 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------- 69 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------- 69 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------------------------------
Confidence 56777777777776 66777777777788888887777643 22322
Q ss_pred cccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCC-CccccCCCCCCEEeCCCCCCCccCc---h
Q 006657 443 RELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI-PENVGAMRSLESIDFSGNLLSGRIP---Q 518 (636)
Q Consensus 443 ~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~i-p~~~~~l~~L~~L~Ls~N~l~~~~p---~ 518 (636)
+++|++|++++|++++.+|..+.++++|++|++++|++++.. +..+..+++|++|++++|++++..+ .
T Consensus 70 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 141 (168)
T 2ell_A 70 --------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141 (168)
T ss_dssp --------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred --------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH
Confidence 234777888888887767777777888888888888887532 2677888888888888888886555 4
Q ss_pred hccCCCCCCeeeccCCcCc
Q 006657 519 SISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 519 ~l~~l~~L~~L~ls~N~l~ 537 (636)
.+..+++|++|++++|.+.
T Consensus 142 ~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHTTCSSCCEETTEETTSC
T ss_pred HHHhCccCcEecCCCCChh
Confidence 7778888888888888775
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-16 Score=138.39 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=108.5
Q ss_pred hhcCceEecCCCcCc-ccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEee
Q 006657 363 LLRNLILRLRSNKFD-GQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMK 441 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (636)
.++++.|++++|.++ +.+|..+..+++|++|++++|++++. ..+.+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 467899999999998 78888889999999999999998854 33333
Q ss_pred ccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCC-CCccccCCCCCCEEeCCCCCCCccCc---
Q 006657 442 GRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGK-IPENVGAMRSLESIDFSGNLLSGRIP--- 517 (636)
Q Consensus 442 ~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~-ip~~~~~l~~L~~L~Ls~N~l~~~~p--- 517 (636)
+++|++|++++|.+++.+|..+..+++|++|++++|++++. .|..++.+++|++|++++|++++..+
T Consensus 63 ---------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 133 (149)
T 2je0_A 63 ---------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133 (149)
T ss_dssp ---------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHH
T ss_pred ---------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHH
Confidence 34488999999999987888888899999999999999863 44788999999999999999997766
Q ss_pred hhccCCCCCCeeeccC
Q 006657 518 QSISSLTFLSHLNLSD 533 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~ 533 (636)
..+..+++|++||+++
T Consensus 134 ~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 134 NVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHCTTCCEETTBC
T ss_pred HHHHHCCCcccccCCC
Confidence 5788899999999874
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-16 Score=141.56 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=110.8
Q ss_pred CccceEEEccCCCCc-cccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhcc
Q 006657 338 SSVLVVFDIGENGFS-GNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMN 416 (636)
Q Consensus 338 p~~L~~L~l~~n~l~-g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 416 (636)
|..++.|++++|.++ +.+|..+. .+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--- 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN--- 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT---
T ss_pred cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC---
Confidence 334445555555554 56666654 389999999999999865 78899999999999999999878877665554
Q ss_pred ccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccC-CcccccccCCCeEeCCCccCcCCCC--
Q 006657 417 QENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDI-PEEMTNLLALQSLNLSHNFLAGKIP-- 493 (636)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~ip-- 493 (636)
|++|++++|.+++.. +..+..+++|++|++++|++++..+
T Consensus 97 -------------------------------------L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 139 (168)
T 2ell_A 97 -------------------------------------LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139 (168)
T ss_dssp -------------------------------------CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH
T ss_pred -------------------------------------CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH
Confidence 889999999999642 3789999999999999999996655
Q ss_pred -ccccCCCCCCEEeCCCCCCCccCch
Q 006657 494 -ENVGAMRSLESIDFSGNLLSGRIPQ 518 (636)
Q Consensus 494 -~~~~~l~~L~~L~Ls~N~l~~~~p~ 518 (636)
..+..+++|++|++++|.+. .+|+
T Consensus 140 ~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp HHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred HHHHHhCccCcEecCCCCChh-hccc
Confidence 47899999999999999988 4554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=156.12 Aligned_cols=219 Identities=12% Similarity=0.077 Sum_probs=142.0
Q ss_pred CCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCc----CcccCCccccCCC
Q 006657 222 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS----FGGPIPDGLQNLT 297 (636)
Q Consensus 222 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~ 297 (636)
+++|+.+++.+ .++ .++...|.++++|+.|+++.|.+. .+++.+|.++.++.++....+. ....-...|.++.
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 45555555555 444 344456777777777777777765 5555677776666666655421 1222233455666
Q ss_pred CCC-EEEccCCcCCcccchhhh----CCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecC
Q 006657 298 SLE-HLDLRSNNFISSIPTWLH----KFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLR 372 (636)
Q Consensus 298 ~L~-~L~L~~n~l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~ 372 (636)
.|+ .+.+... +.++..+. ...+++.+.+.++-.. .-...+...+++|+.++++
T Consensus 177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~-------------------~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDN-------------------ADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCH-------------------HHHHHHHHHCTTCCEEECT
T ss_pred ccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecH-------------------HHHHHHHHhcCCCeEEECC
Confidence 666 4555432 22333222 2344555555443111 1122333347889999999
Q ss_pred CCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccc
Q 006657 373 SNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLK 452 (636)
Q Consensus 373 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (636)
+|+++..-+..|..+++|+.+++.+| ++..-+..|.++++
T Consensus 235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~--------------------------------------- 274 (329)
T 3sb4_A 235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR--------------------------------------- 274 (329)
T ss_dssp TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT---------------------------------------
T ss_pred CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh---------------------------------------
Confidence 98888666678899999999999887 66444556766665
Q ss_pred ccc-EEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeC
Q 006657 453 LVR-CMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDF 507 (636)
Q Consensus 453 ~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~L 507 (636)
|+ .+++.+ +++..-+..|.+|++|+.+++++|+++..-+..|.++++|+.++.
T Consensus 275 -L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 275 -LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 67 788887 777566788999999999999999999777778999999998864
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=129.81 Aligned_cols=108 Identities=21% Similarity=0.179 Sum_probs=54.4
Q ss_pred CCCCEEEeecCCCC-CCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCE
Q 006657 223 PSLQVLKLSACSLH-NSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEH 301 (636)
Q Consensus 223 ~~L~~L~L~~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 301 (636)
++|+.|++++|.++ +.+| ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 45555555555555 4455 3445555555555555555432 34445555555555555555444444444555555
Q ss_pred EEccCCcCCcc-cchhhhCCCCCCEEEccCcccc
Q 006657 302 LDLRSNNFISS-IPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 302 L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|++++|++++. .+..+..+++|++|++++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 55555555432 2244444555555555554444
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=127.65 Aligned_cols=130 Identities=22% Similarity=0.246 Sum_probs=98.5
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEE
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFL 278 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 278 (636)
.+.++++++.++..|. ...++|++|++++|++++ ++...+.++++|++|++++|.++ .+++..+..+++|++|
T Consensus 9 ~~~l~~~~~~l~~~p~-----~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-----GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSSCCT-----TCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCEEEecCCCCccCCC-----CCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEE
Confidence 3566666666665542 123678888888888774 44356778888888888888887 5555677888889999
Q ss_pred EccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccc
Q 006657 279 DLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQG 335 (636)
Q Consensus 279 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 335 (636)
++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999988887666667888899999999998886666667788888888888888764
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=129.87 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=104.2
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD 279 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 279 (636)
+.++++++.++..|. .+ .++|++|++++|.++ .+| ..+.++++|+.|++++|.++ .+++..|.++++|++|+
T Consensus 13 ~~l~~~~~~l~~ip~---~~--~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK---GI--PRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCS---CC--CTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCC---CC--CCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEE
Confidence 466777777766653 11 357888888888887 677 67888999999999999998 45557889999999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 280 LGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 280 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999887888999999999999999998766667888999999999998876
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-14 Score=128.62 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=83.9
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
.+++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 38899999999998889999999999999999999998777778999999999999999998777789999999999999
Q ss_pred CCcCcccCCC
Q 006657 533 DNNLTGKIPL 542 (636)
Q Consensus 533 ~N~l~g~ip~ 542 (636)
+|+++|.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999998874
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.1e-16 Score=145.62 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=110.2
Q ss_pred hhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEcc
Q 006657 317 LHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLS 396 (636)
Q Consensus 317 l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 396 (636)
+.....++.++++.+.+.|.+| .+. .+|..+.. +++|++|++++|.+++ +| .+..+++|++|+++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~-----------~l~-~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~ 78 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIP-----------PIE-KMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLG 78 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCT-----------TCC-CCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEE
T ss_pred HHhcccccCcchheeEeccccC-----------cHh-hhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECC
Confidence 4445566666666666654332 111 34556654 7888888888888876 56 77777888888888
Q ss_pred CccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCccccccc
Q 006657 397 HNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLL 476 (636)
Q Consensus 397 ~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~ 476 (636)
+|+++ .+|..+..+++ |++|++++|++++ +| .+..++
T Consensus 79 ~n~l~-~l~~~~~~~~~----------------------------------------L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 79 RNLIK-KIENLDAVADT----------------------------------------LEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp EEEEC-SCSSHHHHHHH----------------------------------------CSEEEEEEEECCC-HH-HHHHHH
T ss_pred CCCcc-cccchhhcCCc----------------------------------------CCEEECcCCcCCc-CC-ccccCC
Confidence 88877 56655544443 7778888888875 44 577788
Q ss_pred CCCeEeCCCccCcCCCC-ccccCCCCCCEEeCCCCCCCccCchh----------ccCCCCCCeeeccCCcCc
Q 006657 477 ALQSLNLSHNFLAGKIP-ENVGAMRSLESIDFSGNLLSGRIPQS----------ISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 477 ~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 537 (636)
+|++|++++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|++|| +|+++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888888888874322 35777888888888888887665542 67777888776 56554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=125.88 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=82.5
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
.|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 38899999999999889999999999999999999997666668999999999999999997777679999999999999
Q ss_pred CCcCcccCCC
Q 006657 533 DNNLTGKIPL 542 (636)
Q Consensus 533 ~N~l~g~ip~ 542 (636)
+|++.+.++.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999987763
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=126.94 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=103.9
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+.++++|++|++++|.++..+.+ ....++|++|++++|.+++. ..+..+++|++|++++|.++ .+++..+..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~---~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred cCCcCCceEEEeeCCCCchhHHh---hhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 55667777777777777766431 22234888888888888753 36888899999999999997 5564667889
Q ss_pred CCCcEEEccCCcCcccCCc--cccCCCCCCEEEccCCcCCcccch----hhhCCCCCCEEEccCcccc
Q 006657 273 SHLVFLDLGFNSFGGPIPD--GLQNLTSLEHLDLRSNNFISSIPT----WLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~ 334 (636)
++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|. .+..+++|++|++++|...
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999996 5665 7888999999999999987 4455 4888999999999988765
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-14 Score=129.26 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=96.3
Q ss_pred hhcCceEecCCCcCcccCccccCCC-CCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEee
Q 006657 363 LLRNLILRLRSNKFDGQIPAELCRL-TSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMK 441 (636)
Q Consensus 363 ~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (636)
+.+|+.|++++|+++. +|. +..+ ++|++|++++|++++. ..+..
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~------------------------------- 62 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPL------------------------------- 62 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCC-------------------------------
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--ccccc-------------------------------
Confidence 5677788888888773 444 4444 4888888888888743 22322
Q ss_pred ccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCc--cccCCCCCCEEeCCCCCCCccCchh
Q 006657 442 GRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPE--NVGAMRSLESIDFSGNLLSGRIPQS 519 (636)
Q Consensus 442 ~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~--~~~~l~~L~~L~Ls~N~l~~~~p~~ 519 (636)
+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++++|.++ .+|..
T Consensus 63 ---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~ 131 (176)
T 1a9n_A 63 ---------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHY 131 (176)
T ss_dssp ---------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTH
T ss_pred ---------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhH
Confidence 334788888888888554455588888999999999886 5665 7888888999999999887 45654
Q ss_pred ----ccCCCCCCeeeccCCcCcc
Q 006657 520 ----ISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 520 ----l~~l~~L~~L~ls~N~l~g 538 (636)
+..+++|++||+++|....
T Consensus 132 ~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 132 RLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHHHHCTTCSEETTEECCHHH
T ss_pred HHHHHHHCCccceeCCCcCCHHH
Confidence 7888899999999887653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-15 Score=143.22 Aligned_cols=64 Identities=28% Similarity=0.324 Sum_probs=34.8
Q ss_pred hcCCCCCcEEEccCCcCcccCCc------cccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 269 LFGLSHLVFLDLGFNSFGGPIPD------GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 269 l~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
+.....++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 34445566666666666655554 45555555555555555553 33 4555555555555555444
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-12 Score=133.18 Aligned_cols=241 Identities=10% Similarity=0.099 Sum_probs=142.1
Q ss_pred CCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEE
Q 006657 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLD 303 (636)
Q Consensus 224 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 303 (636)
+|+.+.+..+ ++ .++...|.++ +|+.+.+.. .++ .+...+|.++++|+.+++++|+++..-...|. .++|+.+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE
Confidence 4555555544 32 3443455553 566666654 343 44446666777777777776666643333343 46777777
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccc
Q 006657 304 LRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAE 383 (636)
Q Consensus 304 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~ 383 (636)
+..+ ++.....+|.++++|+.+++..+ ++ .++...+.. .+|+.+.+ .+.++..-..+
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-------------------~I~~~aF~~-~~L~~i~l-p~~i~~I~~~a 266 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-------------------TIGQEAFRE-SGITTVKL-PNGVTNIASRA 266 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CC-------------------EECTTTTTT-CCCSEEEE-ETTCCEECTTT
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-cc-------------------Ccccccccc-CCccEEEe-CCCccEEChhH
Confidence 7643 55444566667777777766553 22 222222221 45666666 33444344566
Q ss_pred cCCCCCCCEEEccCccCc-----cccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEE
Q 006657 384 LCRLTSLHILDLSHNNFS-----GTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMD 458 (636)
Q Consensus 384 l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 458 (636)
|..+++|+.+++.+|.+. ...+..|.+|++ |+.++
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~----------------------------------------L~~l~ 306 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK----------------------------------------LARFE 306 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT----------------------------------------CCEEC
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc----------------------------------------CCeEE
Confidence 777778888877776654 122233444333 66677
Q ss_pred CcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCC-CCCeeeccCCcC
Q 006657 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT-FLSHLNLSDNNL 536 (636)
Q Consensus 459 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l 536 (636)
|. +.++..-...|.+|++|+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus 307 l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 307 IP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred eC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 76 3465445567777888888888554 554556677777 888888888877766666666663 667777766654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=129.71 Aligned_cols=220 Identities=11% Similarity=0.058 Sum_probs=125.9
Q ss_pred CCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEE
Q 006657 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLD 303 (636)
Q Consensus 224 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 303 (636)
+|+.+.+.. .+. .++...|.++++|+.++++.|.++ .++...|. ..+|+.+.+..+ ++..-...|.++++|+.++
T Consensus 158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 455555543 333 333345556666666666666554 44444444 355666666533 4434444555666666666
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCc-----c
Q 006657 304 LRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFD-----G 378 (636)
Q Consensus 304 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~-----~ 378 (636)
+..+ ++.....+|.+ .+|+.+.+.+ .++ .++...+..+.+|+.+.+.+|.+. .
T Consensus 233 l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-------------------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 233 IPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-------------------NIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp CCTT-CCEECTTTTTT-CCCSEEEEET-TCC-------------------EECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred cCCC-ccCcccccccc-CCccEEEeCC-Ccc-------------------EEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 6543 33333344444 4565555522 222 222222223556666666555443 2
Q ss_pred cCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEE
Q 006657 379 QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMD 458 (636)
Q Consensus 379 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 458 (636)
.-+..|..+++|+.+++.+ .++..-...|.+|++ |+.++
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~----------------------------------------L~~l~ 329 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK----------------------------------------VTQLT 329 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS----------------------------------------CCEEE
T ss_pred ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC----------------------------------------ccEEE
Confidence 3345677888888888873 455333445555544 66777
Q ss_pred CcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCC-CCCEEeCCCCCCC
Q 006657 459 LSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR-SLESIDFSGNLLS 513 (636)
Q Consensus 459 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~-~L~~L~Ls~N~l~ 513 (636)
|.+| ++..-+..|.++ +|+.+++++|.+....+..|..++ .++.|.+..+.+.
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 7544 554556678888 899999988888766666677774 6788887776543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=118.05 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=92.3
Q ss_pred cCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccc
Q 006657 365 RNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRE 444 (636)
Q Consensus 365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (636)
..+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.++++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~------------------------------- 55 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQ------------------------------- 55 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT-------------------------------
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCccc-------------------------------
Confidence 3467888888887 4676553 78999999999999877877776655
Q ss_pred cccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 445 LAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 445 ~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+....+
T Consensus 56 ---------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 56 ---------LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ---------CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ---------CCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 7899999999997777778999999999999999997777789999999999999999986543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-12 Score=116.18 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=89.1
Q ss_pred ceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccc
Q 006657 367 LILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA 446 (636)
Q Consensus 367 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (636)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~--------------------------------- 58 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVN--------------------------------- 58 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT---------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcC---------------------------------
Confidence 56788888875 6677664 78999999999999877877766655
Q ss_pred cccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCcc
Q 006657 447 YNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGR 515 (636)
Q Consensus 447 ~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~ 515 (636)
|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+...
T Consensus 59 -------L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 59 -------LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp -------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred -------CCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 78999999999976666789999999999999999976666699999999999999999854
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-11 Score=127.19 Aligned_cols=61 Identities=7% Similarity=0.121 Sum_probs=37.3
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccC
Q 006657 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174 (636)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 174 (636)
++.++++|+.+.+..+ ++.. -...|.++++|+.+++..+ ++..-...|.++.+|+.+.+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 5667778888887643 4421 1345677777887777654 3323344566777777665554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-13 Score=140.19 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=38.9
Q ss_pred cccEEECcCCccCcc----CCcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeCCCCCCCccCchhc
Q 006657 453 LVRCMDLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDFSGNLLSGRIPQSI 520 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l 520 (636)
.|++|||++|.+++. ++..+...++|++|+|++|.+++. ++..+...++|++|||++|.++......+
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 366666666666542 234445556677777777766542 22333445667777777777665444433
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-12 Score=132.77 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=81.7
Q ss_pred ccEEECcC-CccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 454 VRCMDLSG-NNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 454 L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
|+.|+|++ |+|++..+..|+++++|++|+|++|+|++..|..|.++++|++|||++|+|++..+..+..++ |++|+++
T Consensus 33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence 89999996 999988888999999999999999999999999999999999999999999977777776666 9999999
Q ss_pred CCcCcccCCCCC
Q 006657 533 DNNLTGKIPLGT 544 (636)
Q Consensus 533 ~N~l~g~ip~~~ 544 (636)
+|++.|.++..+
T Consensus 112 ~N~~~c~c~l~~ 123 (347)
T 2ifg_A 112 GNPLHCSCALRW 123 (347)
T ss_dssp SSCCCCCGGGHH
T ss_pred CCCccCCCccHH
Confidence 999999877543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=121.71 Aligned_cols=312 Identities=12% Similarity=0.040 Sum_probs=164.7
Q ss_pred hhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCC
Q 006657 135 VFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD 214 (636)
Q Consensus 135 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~ 214 (636)
..|.++.+|+.+.+..+ ++..-..+|.++++|+.+++..+ +..++. ..+.++++|+.+.+..+ +.....
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--------~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGR--------CTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT--------TTTTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccc--------hhhcccccchhhcccCc-eeeecc
Confidence 35677888999988744 55444567888889998888754 333221 12566677766655432 221111
Q ss_pred hhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCcccc
Q 006657 215 WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQ 294 (636)
Q Consensus 215 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 294 (636)
. .+..+..++....... . .+....|.++++|+.+.+..+.. .+....|.++.+|+.+.+..+ ++..-...+.
T Consensus 134 ~--aF~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~ 205 (394)
T 4fs7_A 134 E--AFKGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFA 205 (394)
T ss_dssp T--TTTTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred e--eeecccccccccCccc--c-ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhc
Confidence 0 2222222222111111 1 22224566666666666654432 344455666666666666554 3323334455
Q ss_pred CCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCC
Q 006657 295 NLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSN 374 (636)
Q Consensus 295 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n 374 (636)
++..|+.+.+..+... +........+|+.+.+.... + .+....+..+..++.+.+..+
T Consensus 206 ~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-------------------~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 206 ECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-------------------ELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp TCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-------------------EECSSTTTTCSSCCEEEECCT
T ss_pred cccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-------------------ecccccccccccceeEEcCCC
Confidence 5666666555544321 11222233455555443221 0 111111112444555555444
Q ss_pred cCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccc
Q 006657 375 KFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLV 454 (636)
Q Consensus 375 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 454 (636)
... .....|..+..++.+....+.+. ...+. .+..|
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~----------------------------------------~~~~L 299 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFY----------------------------------------GCSSL 299 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTT----------------------------------------TCTTC
T ss_pred cce-eeccccccccccceeccCceeec---ccccc----------------------------------------ccccc
Confidence 322 22334445555555544433211 11222 23346
Q ss_pred cEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 455 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
+.+.+.++ ++..-...|.++.+|+.+++..+ ++..-..+|.++++|+.+++..| ++..-...|.++.+|+.+++..+
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 66777554 55344567888888888888654 65444667888888999988876 66556677888888988888654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-12 Score=134.54 Aligned_cols=140 Identities=18% Similarity=0.153 Sum_probs=98.2
Q ss_pred hcCceEecCCCcCcccCcccc-CCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeec
Q 006657 364 LRNLILRLRSNKFDGQIPAEL-CRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKG 442 (636)
Q Consensus 364 ~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (636)
.+|+.|+|++|.++......+ ..+++|+.|+|++|+++......+...-.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~----------------------------- 151 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL----------------------------- 151 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH-----------------------------
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH-----------------------------
Confidence 467777777777654322222 23456788888888877544444332110
Q ss_pred cccccccccccccEEECcCCccCcc----CCcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeCCCCCCCc
Q 006657 443 RELAYNTMLKLVRCMDLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDFSGNLLSG 514 (636)
Q Consensus 443 ~~~~~~~~~~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~~ 514 (636)
...+.|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.++.
T Consensus 152 ------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 ------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp ------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred ------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 0123488899999988753 444557789999999999999853 35567778899999999999986
Q ss_pred c----CchhccCCCCCCeeeccCCcCcc
Q 006657 515 R----IPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 515 ~----~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
. ++..+...++|++||+++|+++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3 44556667899999999999875
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-11 Score=123.80 Aligned_cols=132 Identities=19% Similarity=0.152 Sum_probs=91.8
Q ss_pred eEecCCC-cCcccCccccCCCCCCCEEEccC-ccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeecccc
Q 006657 368 ILRLRSN-KFDGQIPAELCRLTSLHILDLSH-NNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGREL 445 (636)
Q Consensus 368 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (636)
.++.+++ +++ .+|. +..+++|+.|+|++ |++++..|..|.++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~-------------------------------- 57 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGE-------------------------------- 57 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCC--------------------------------
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccC--------------------------------
Confidence 4566776 676 4777 88888889999986 8888766666665544
Q ss_pred ccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc-hhccCCC
Q 006657 446 AYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP-QSISSLT 524 (636)
Q Consensus 446 ~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~ 524 (636)
|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..+..++ |+.|+|++|.+...-. ..|..+.
T Consensus 58 --------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~ 128 (347)
T 2ifg_A 58 --------LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWE 128 (347)
T ss_dssp --------CSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHH
T ss_pred --------CCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHH
Confidence 78889999999888888888899999999999999866555566555 9999999998874322 1122222
Q ss_pred CCCeeeccCCcCcccCCC
Q 006657 525 FLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 525 ~L~~L~ls~N~l~g~ip~ 542 (636)
......+..++++|..|.
T Consensus 129 ~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 129 EEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp HTTCSSCGGGCCCCSSSS
T ss_pred HhCcccccccCCCCCCCh
Confidence 222333444555555443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.3e-08 Score=102.75 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=22.8
Q ss_pred cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 470 EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 470 ~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
.+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+.....|+.+.+..|
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 34445555555555332 332223344455555555555443221 23334444444444433
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.6e-08 Score=100.09 Aligned_cols=316 Identities=8% Similarity=0.052 Sum_probs=161.7
Q ss_pred cccCCC-CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCc---cCCCCCccCcCCCCCCeEeccCCCCCCccccccc
Q 006657 111 SLLDLK-HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAE---LTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLY 186 (636)
Q Consensus 111 ~l~~l~-~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~ 186 (636)
++.+++ .|+.+.+..+ ++.. -...|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ +..+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~---- 130 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS---- 130 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT----
T ss_pred hccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh----
Confidence 455553 4777777644 3321 23457778888888887653 44333456777777777766543 222211
Q ss_pred ccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCCh
Q 006657 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVP 266 (636)
Q Consensus 187 ~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (636)
..+.++.+|+.+.+..+ ...... ..+..+.+|+.+.+..+ ++ .+....|.+ ..|+.+.+..+.. .+..
T Consensus 131 ----~aF~~c~~L~~i~lp~~-~~~I~~--~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~~--~i~~ 198 (394)
T 4gt6_A 131 ----EAFHHCEELDTVTIPEG-VTSVAD--GMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKVT--RIGT 198 (394)
T ss_dssp ----TTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTCC--EECT
T ss_pred ----hhhhhhcccccccccce-eeeecc--cceecccccccccccce-ee-Eeccccccc-cceeEEEECCccc--cccc
Confidence 12566777777777533 222211 13455666777766543 22 233233433 4566666654432 2233
Q ss_pred hhhcCCCCCcEEEccCCcCcccCCcc--------------ccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcc
Q 006657 267 SWLFGLSHLVFLDLGFNSFGGPIPDG--------------LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332 (636)
Q Consensus 267 ~~l~~l~~L~~L~L~~n~l~~~~p~~--------------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 332 (636)
.+|.++.+++......+..... ... +.....+..+.+.. .++.....+|.++.+|+.+.+..+.
T Consensus 199 ~af~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 199 NAFSECFALSTITSDSESYPAI-DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp TTTTTCTTCCEEEECCSSSCBS-SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC
T ss_pred chhhhccccceecccccccccc-cceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc
Confidence 5566666666665554433211 100 11122333333322 1222223455666666666654332
Q ss_pred cccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhh
Q 006657 333 LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLT 412 (636)
Q Consensus 333 l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 412 (636)
. .+....+..+..|+.+.+. +.++..-...|.++.+|+.+++..+ ++..-...|.+|+
T Consensus 277 ~--------------------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 277 V--------------------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp C--------------------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred c--------------------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 1 1222222235666666664 3344333455667777777777543 4322334455544
Q ss_pred hhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCC
Q 006657 413 AMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKI 492 (636)
Q Consensus 413 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~i 492 (636)
+ |+.+.+..+ ++..-..+|.+|++|+.+++.++....
T Consensus 335 ~----------------------------------------L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-- 371 (394)
T 4gt6_A 335 Q----------------------------------------LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-- 371 (394)
T ss_dssp T----------------------------------------CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--
T ss_pred C----------------------------------------CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--
Confidence 4 777778544 654445678999999999999886542
Q ss_pred CccccCCCCCCEEeCCCCCCC
Q 006657 493 PENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 493 p~~~~~l~~L~~L~Ls~N~l~ 513 (636)
..+....+|+.+.+..|.+.
T Consensus 372 -~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 372 -NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp -HTCBCCCCC-----------
T ss_pred -hhhhccCCCCEEEeCCCCEE
Confidence 35677788999888777653
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-09 Score=110.71 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=6.7
Q ss_pred CCCCcEEEcccCCC
Q 006657 247 FSSLYTLDLSYNEF 260 (636)
Q Consensus 247 l~~L~~L~Ls~n~l 260 (636)
+++|++|+|++|.+
T Consensus 251 ~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 251 FPNLKWLGIVDAEE 264 (362)
T ss_dssp CTTCCEEEEESCTT
T ss_pred CCCcCEEeCCCCCC
Confidence 34445555544444
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=102.11 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=43.4
Q ss_pred cceEEEccCCCCccccchHHHH--hhhcCceEecCCCcCccc----CccccCCCCCCCEEEccCccCcccc
Q 006657 340 VLVVFDIGENGFSGNIPAWIGE--KLLRNLILRLRSNKFDGQ----IPAELCRLTSLHILDLSHNNFSGTL 404 (636)
Q Consensus 340 ~L~~L~l~~n~l~g~ip~~~~~--~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~ 404 (636)
+|+.|++.+|.+.+..+..+.. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 4555555555555444444432 367899999999988863 3444456789999999999887443
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-05 Score=82.45 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=35.9
Q ss_pred cccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeecc
Q 006657 470 EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLS 532 (636)
Q Consensus 470 ~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 532 (636)
..|.++++|+.+.+.++.++..-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.+.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 44556666666666666555444455666666666666543 443334556666666666554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-05 Score=83.96 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=23.7
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCC
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFS 508 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls 508 (636)
+|+.+++.++.++..-...|.++.+|+.++|..+ ++..-..+|.++++|+.+.+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 3444444444444333344444455555544332 332223344444444444443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=6.7e-08 Score=89.69 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=53.5
Q ss_pred cccEEECcCCccCcc----CCcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeC--CCCCCCcc----Cch
Q 006657 453 LVRCMDLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDF--SGNLLSGR----IPQ 518 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~L--s~N~l~~~----~p~ 518 (636)
.|++|+|++|.++.. +...+...++|++|+|++|.+++. +...+...++|++|+| ++|.+... +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 366667776666542 223344456677777777777643 3445566677777777 67777653 334
Q ss_pred hccCCCCCCeeeccCCcCc
Q 006657 519 SISSLTFLSHLNLSDNNLT 537 (636)
Q Consensus 519 ~l~~l~~L~~L~ls~N~l~ 537 (636)
.+...++|++|++++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 4555677888888888764
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-08 Score=94.53 Aligned_cols=103 Identities=13% Similarity=0.034 Sum_probs=58.2
Q ss_pred eeecCccccCCCCCCEEeCCCC-CCCCC---CCchhhcCCCCCCEEEccCCccCCC----CCccCcCCCCCCeEeccCCC
Q 006657 105 IGKINPSLLDLKHLVYLDLSNN-NFENN---QIPVFLGFMGSLRHIDLSRAELTGM----IPHQLGNLFNLQYLDLSIDT 176 (636)
Q Consensus 105 ~g~i~~~l~~l~~L~~L~Ls~n-~l~~~---~ip~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~ 176 (636)
...+...+...+.|++|+|++| .+... .+...+...++|++|+|++|.+... +...+...++|++|+|++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3344555677888888888888 77642 2344556667778888887777643 22334445666777777665
Q ss_pred CCCcccccccccccccccCCCCCcEEEc--cCCCCCC
Q 006657 177 HNPISFSFLYLENFSWLSGLSLLKHLDL--TGVDLST 211 (636)
Q Consensus 177 ~~~~~~~~~~~~~l~~l~~l~~L~~L~L--s~n~l~~ 211 (636)
+.......+ ...+...++|++|+| ++|.++.
T Consensus 105 i~~~g~~~l----~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 105 ISGSGILAL----VEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCHHHHHHH----HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CCHHHHHHH----HHHHHhCCCceEEEecCCCCCCCH
Confidence 543211110 112444455555555 4455443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.3e-07 Score=89.53 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=34.4
Q ss_pred cccccEEECcCCccCc--cCCcccccccCCCeEeCCCccCcCCCCccccCCC--CCCEEeCCCCCCCccCc
Q 006657 451 LKLVRCMDLSGNNLSG--DIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMR--SLESIDFSGNLLSGRIP 517 (636)
Q Consensus 451 ~~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~--~L~~L~Ls~N~l~~~~p 517 (636)
++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3445666666666655 3444555566666666666666543 2223232 55555555555555443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-07 Score=92.17 Aligned_cols=84 Identities=27% Similarity=0.296 Sum_probs=65.7
Q ss_pred EECcCCccC---ccCCcccccccCCCeEeCCCccCcC--CCCccccCCCCCCEEeCCCCCCCccCchhccCCC--CCCee
Q 006657 457 MDLSGNNLS---GDIPEEMTNLLALQSLNLSHNFLAG--KIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT--FLSHL 529 (636)
Q Consensus 457 L~Ls~N~l~---g~~p~~~~~l~~L~~L~Ls~N~l~~--~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 529 (636)
++++.|... +.++....++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777432 2222223578999999999999998 5667778999999999999999975 3344454 99999
Q ss_pred eccCCcCcccCCC
Q 006657 530 NLSDNNLTGKIPL 542 (636)
Q Consensus 530 ~ls~N~l~g~ip~ 542 (636)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998874
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.82 E-value=2.9e-06 Score=76.82 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=69.2
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCcc-CcCCCCccccCC----CCCCEEeCCCCC-CCccCchhccCCCCC
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNF-LAGKIPENVGAM----RSLESIDFSGNL-LSGRIPQSISSLTFL 526 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~-l~~~ip~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 526 (636)
.|+.||++++.++..--..+..+++|+.|+|++|. +++.--..++.+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 48999999999987767778899999999999995 776544556654 479999999985 876655668889999
Q ss_pred CeeeccCCc
Q 006657 527 SHLNLSDNN 535 (636)
Q Consensus 527 ~~L~ls~N~ 535 (636)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.70 E-value=1.6e-05 Score=71.87 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=51.5
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCc-CcccCCccccCC----CCCCEEEccCCc-CCcccchhhhCCCC
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNS-FGGPIPDGLQNL----TSLEHLDLRSNN-FISSIPTWLHKFTR 322 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 322 (636)
.|+.||++++.++.... ..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 56666666666654333 445667777777777764 543322334443 367888887764 66554556677788
Q ss_pred CCEEEccCcc
Q 006657 323 LEYLSLRENR 332 (636)
Q Consensus 323 L~~L~L~~n~ 332 (636)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887775
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=6e-05 Score=64.98 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=51.0
Q ss_pred eEeCCCccCc-CCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCc
Q 006657 480 SLNLSHNFLA-GKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGF 549 (636)
Q Consensus 480 ~L~Ls~N~l~-~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~ 549 (636)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|++.+.+...+...++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl 80 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWL 80 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHH
Confidence 6777777775 35665443 46889999999998776777888999999999999999887654444443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00048 Score=63.46 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=53.9
Q ss_pred cccEEECcCCccCccC----CcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeCCCCC---CCc----cCc
Q 006657 453 LVRCMDLSGNNLSGDI----PEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDFSGNL---LSG----RIP 517 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~----p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~---l~~----~~p 517 (636)
.|+.|+|++|+++..- .+.+..-+.|++|+|++|++++. +-+.+..-+.|++|+|++|. +.. .+.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 3677777777776432 23344557788888888887643 23344555678888888653 332 244
Q ss_pred hhccCCCCCCeeeccCCcC
Q 006657 518 QSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l 536 (636)
..+..-+.|++|++++|..
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 5566667888888887764
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00029 Score=64.96 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=42.3
Q ss_pred cCccccCCCCCCEEeCCCC-CCCCC---CCchhhcCCCCCCEEEccCCccCCCCCcc----CcCCCCCCeEeccCCCCC
Q 006657 108 INPSLLDLKHLVYLDLSNN-NFENN---QIPVFLGFMGSLRHIDLSRAELTGMIPHQ----LGNLFNLQYLDLSIDTHN 178 (636)
Q Consensus 108 i~~~l~~l~~L~~L~Ls~n-~l~~~---~ip~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~~~ 178 (636)
+...+.+-+.|++|+|++| .+... .+-+.+..-+.|++|+|++|++.+.-... +..-+.|++|+|+.|.+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3334456678888888875 66432 13344556677777777777776432222 334456666666666553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0071 Score=51.79 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=47.5
Q ss_pred cEEECcCCccC-ccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 455 RCMDLSGNNLS-GDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 455 ~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
..++-+++.++ ..+|..+ -++|++|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999997 4667544 247999999999999776777899999999999999885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 636 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-20 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-18 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-10 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.001 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 3e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.001 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 6e-05 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 3e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 5e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.004 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.003 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 89.8 bits (221), Expect = 3e-20
Identities = 69/319 (21%), Positives = 110/319 (34%), Gaps = 34/319 (10%)
Query: 31 CIQSERKALLRFKQDLKDPANRLASWSDG-NCC--TWAGVVCNDSTG--RVLELRLGNPF 85
C +++ALL+ K+DL +P L+SW +CC TW GV+C+ T RV L L
Sbjct: 3 CNPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 86 LHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRH 145
L P I SL +L +L +L + N IP + + L +
Sbjct: 62 LPKPYP----------------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 146 IDLSRAELTGMIPHQLGNLFNLQYLDLS-----------IDTHNPISFSFLYLENFSWLS 194
+ ++ ++G IP L + L LD S I + + S
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 195 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLD 254
S L + + + L S + + + S T
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 255 LSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIP 314
+ + + +L LDL N G +P GL L L L++ NN IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 315 TWLHKFTRLEYLSLRENRL 333
R + + N+
Sbjct: 286 QGG-NLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 84.8 bits (208), Expect = 1e-18
Identities = 69/303 (22%), Positives = 102/303 (33%), Gaps = 41/303 (13%)
Query: 271 GLSHLVFLDLGFNSFGG--PIPDGLQNLTSLEHLDLRSN-NFISSIPTWLHKFTRLEYLS 327
+ LDL + PIP L NL L L + N + IP + K T+L YL
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 328 LRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRL 387
+ + G I ++ + L N G +P + L
Sbjct: 108 ITHTNVSGAIP-------------------DFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 388 TSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAY 447
+L + N SG +P + + +
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-----------------P 191
Query: 448 NTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDF 507
T L N+ + VG ++L +D
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251
Query: 508 SGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNN-LCGAPLPK 566
N + G +PQ ++ L FL LN+S NNL G+IP G LQ F+ S +A N LCG+PLP
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311
Query: 567 NCT 569
CT
Sbjct: 312 -CT 313
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 83.1 bits (204), Expect = 9e-18
Identities = 74/427 (17%), Positives = 135/427 (31%), Gaps = 83/427 (19%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
S DL + L ++ + ++ +L I+ S +LT + P L NL L
Sbjct: 38 VSQTDLDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92
Query: 170 LDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
+ ++ + I+ L N + L+ + +L+ + L +N + + L
Sbjct: 93 ILMNNNQIADITPLA-NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 151
Query: 230 LSACSL--HNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG 287
+ ++L TL+ + S L L++L L N
Sbjct: 152 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 211
Query: 288 PIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIG 347
P LT+L+ L L N L T L L L N++ +
Sbjct: 212 ITPL--GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--------- 258
Query: 348 ENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRC 407
L LT L L L N S P
Sbjct: 259 ------------------------------------LSGLTKLTELKLGANQISNISPLA 282
Query: 408 INNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD 467
+ + D + L+ L L NN+S
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYL--------------------TLYFNNISDI 322
Query: 468 IPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLS 527
P +++L LQ L ++N ++ ++ + ++ + N +S P +++LT ++
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376
Query: 528 HLNLSDN 534
L L+D
Sbjct: 377 QLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.9 bits (136), Expect = 3e-09
Identities = 60/349 (17%), Positives = 115/349 (32%), Gaps = 36/349 (10%)
Query: 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHL 302
+ L +T+ + L ++ L LG S DG++ L +L +
Sbjct: 17 TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQI 71
Query: 303 DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEK 362
+ +N P L T+L + + N++ + + G F+ I K
Sbjct: 72 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129
Query: 363 LLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSME 422
L NL S+ I A + + + L ++ +
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189
Query: 423 TDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLN 482
+E I + ++ +L + + L+GN L + +L L L+
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247
Query: 483 LSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP--------------------QSISS 522
L++N ++ P + + L + N +S P IS+
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305
Query: 523 LTFLSHLNLSDNNLTGKIPLG--TQLQGFNASCFAGNNLCGAPLPKNCT 569
L L++L L NN++ P+ T+LQ + N + N T
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFA---NNKVSDVSSLANLT 351
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.4 bits (189), Expect = 4e-16
Identities = 48/307 (15%), Positives = 85/307 (27%), Gaps = 45/307 (14%)
Query: 236 HNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQN 295
L ++P LDL N+ + L +L L L N P
Sbjct: 19 DLGLEKVPKDLPPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77
Query: 296 LTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI-----SSVLVVFDIGENG 350
L LE L L N L +++ + ++V
Sbjct: 78 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137
Query: 351 FSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINN 410
SG ++ L ++ IP L SL L L N + +
Sbjct: 138 SSGIENGAFQG--MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKG 193
Query: 411 LTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPE 470
L + S + + + +R + L+ N L +P
Sbjct: 194 LNNLAKLGLSFNS----------------ISAVDNGSLANTPHLRELHLNNNKLV-KVPG 236
Query: 471 EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLN 530
+ + +Q + L +N + ++ S DF P + S ++
Sbjct: 237 GLADHKYIQVVYLHNNNI-----------SAIGSNDFCP-------PGYNTKKASYSGVS 278
Query: 531 LSDNNLT 537
L N +
Sbjct: 279 LFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.6 bits (174), Expect = 3e-14
Identities = 46/239 (19%), Positives = 85/239 (35%), Gaps = 20/239 (8%)
Query: 116 KHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS-- 173
LDL NN + +L + L +++ + P L L+ L LS
Sbjct: 31 PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 174 -----------IDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNML 222
+ + + S +GL+ + ++L L ++ +
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 223 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGF 282
L ++++ ++ +P SL L L N+ + L GL++L L L F
Sbjct: 150 KKLSYIRIA----DTNITTIPQGLPPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSF 204
Query: 283 NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVL 341
NS L N L L L +NN + +P L ++ + L N + + S+
Sbjct: 205 NSISAVDNGSLANTPHLRELHL-NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.2 bits (173), Expect = 4e-14
Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 22/278 (7%)
Query: 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332
LDL N +NL +L L L +N P +LE L L +N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 333 LQGMISSV------LVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCR 386
L+ + + L V + ++ + + ++ + L K G
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV--VELGTNPLKSSGIENGAFQG 148
Query: 387 LTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILV-----VMK 441
+ L + ++ N + +LT + N + + + +
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208
Query: 442 GRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAG------KIPEN 495
+ +R + L+ N L +P + + +Q + L +N ++ P
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267
Query: 496 VGAMRSLESIDFSGNLLSGR--IPQSISSLTFLSHLNL 531
S + N + P + + + + L
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.7 bits (130), Expect = 1e-08
Identities = 40/231 (17%), Positives = 80/231 (34%), Gaps = 13/231 (5%)
Query: 337 ISSVLVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDL 395
+ + D+ N + L+NL L L +NK P L L L L
Sbjct: 29 LPPDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKISPGAFAPLVKLERLYL 86
Query: 396 SHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTM----- 450
S N + L + EN + ++ + I+V + L + +
Sbjct: 87 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146
Query: 451 --LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFS 508
+K + + ++ N++ +L L+L N + ++ + +L + S
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLS 203
Query: 509 GNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGNNL 559
N +S S+++ L L+L++N L + NN+
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.9 bits (102), Expect = 4e-05
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
L++V+C DL + D+P + L+L +N + + +++L ++ N
Sbjct: 12 LRVVQCSDLGLEKVPKDLPPD------TALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65
Query: 511 LLSGRIPQSISSLTFLSHLNLSDNNLTG 538
+S P + + L L L LS N L
Sbjct: 66 KISKISPGAFAPLVKLERLYLSKNQLKE 93
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (141), Expect = 4e-10
Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 4/222 (1%)
Query: 104 LIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGN 163
+ + + ++DLSN+ E + + L L+++ L L+ I + L
Sbjct: 34 FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93
Query: 164 LFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
NL L+ + F S S L L +
Sbjct: 94 NSNLVRLN---LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 150
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL-GF 282
+ L +L S + +L LDLS + F L++L L L
Sbjct: 151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 210
Query: 283 NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLE 324
L + +L+ L + ++ L+
Sbjct: 211 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 5/123 (4%)
Query: 198 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSY 257
L + LDLTG +L L+ S V+ P + + +DLS
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLL-----SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 55
Query: 258 NEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWL 317
+ + + + L S L L L PI + L ++L L+L + S
Sbjct: 56 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115
Query: 318 HKF 320
Sbjct: 116 LLS 118
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLL 512
L + +DL+G NL D+ + + + + +F+ + E+ + ++ +D S +++
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVI 58
Query: 513 SGR-IPQSISSLTFLSHLNLSDNNLTGKIP 541
+ +S + L +L+L L+ I
Sbjct: 59 EVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 4e-05
Identities = 37/279 (13%), Positives = 94/279 (33%), Gaps = 22/279 (7%)
Query: 252 TLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNF-I 310
TLDL+ + L ++ + P+ + + ++H+DL ++ +
Sbjct: 4 TLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60
Query: 311 SSIPTWLHKFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWIGEKLL 364
S++ L + ++L+ LSL RL I + LV ++
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 365 RNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETD 424
L + + + ++H + + T + + S
Sbjct: 121 SRL--------DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 172
Query: 425 KEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSG-NNLSGDIPEEMTNLLALQSLNL 483
+ + ++LS V++K L ++ + LS ++ + E+ + L++L +
Sbjct: 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232
Query: 484 SHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISS 522
G + +L + + + + +I +
Sbjct: 233 FGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 47/248 (18%), Positives = 78/248 (31%), Gaps = 26/248 (10%)
Query: 142 SLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFS-----------------F 184
+ + I L ++ + NL L L + I +
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 185 LYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPI 244
L + + GL L L L + L +LQ L L +L +
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDT-F 149
Query: 245 ANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDL 304
+ +L L L N +++ GL L L L N P ++L L L L
Sbjct: 150 RDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV-----LVVFDIGENGFSGNIPAWI 359
+NN + L L+YL L +N + L F + ++P +
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268
Query: 360 GEKLLRNL 367
+ L+ L
Sbjct: 269 AGRDLKRL 276
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 60/313 (19%), Positives = 91/313 (29%), Gaps = 54/313 (17%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C L +P+ ++ + L N + + + +L L L N
Sbjct: 18 CP-QQGLQAVPVGIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 293 LQNLTSLEHLDLRSNNFISSI-PTWLHKFTRLEYLSLRENRLQGMISSV------LVVFD 345
L LE LDL N + S+ P H RL L L LQ + + L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 346 IGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLP 405
+ +N + L L N+ L SL L L N + P
Sbjct: 136 LQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 406 RCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS 465
+L +M + L NNLS
Sbjct: 195 HAFRDLGRLM----------------------------------------TLYLFANNLS 214
Query: 466 GDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTF 525
E + L ALQ L L+ N L+ S + + +PQ ++
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL 273
Query: 526 LSHLNLSDNNLTG 538
L+ N+L G
Sbjct: 274 K---RLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 40/274 (14%), Positives = 81/274 (29%), Gaps = 25/274 (9%)
Query: 306 SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSV------LVVFDIGENGFSGNIPAWI 359
+ ++P + + + L NR+ + ++ L + + N + A
Sbjct: 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 360 GEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQEN 419
L + + + PA L LH L L
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-------------QELGPG 123
Query: 420 SMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQ 479
++ + L + L + L GN +S L +L
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNL---THLFLHGNRISSVPERAFRGLHSLD 180
Query: 480 SLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGK 539
L L N +A P + L ++ N LS ++++ L L +L L+DN
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240
Query: 540 IPLGTQLQGFNASCFAGNNLCGAPLPKNCTDQNV 573
+ + + + LP+ +++
Sbjct: 241 CRARPLWAWLQKFRGSSSEVPCS-LPQRLAGRDL 273
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 2e-09
Identities = 40/217 (18%), Positives = 60/217 (27%), Gaps = 20/217 (9%)
Query: 118 LVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTH 177
+ ++ N +P L + LS L L L L+L
Sbjct: 12 HLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 178 NPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 237
+ + + L+ L L G L + + N L SL + L
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 238 SLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLT 297
L TL P L L L L N+ L L
Sbjct: 128 ELYL---------------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 298 SLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334
+L+ L L+ N+ +IP L + L N
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 2e-08
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 9/187 (4%)
Query: 355 IPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFS-----GTLPRCIN 409
+P + + L L N A L T L L+L + GTLP
Sbjct: 25 LPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 410 NLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIP 469
+ ++ + T+ + L L ++ + L GN L P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 470 EEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHL 529
+T L+ L+L++N L + + +L+++ N L IP+ L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200
Query: 530 NLSDNNL 536
L N
Sbjct: 201 FLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 35/184 (19%), Positives = 52/184 (28%), Gaps = 9/184 (4%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C +L LP L LS N T + L + L L+L +
Sbjct: 17 CD-KRNLTALPPDLPKDTTILHLSENLL-YTFSLATLMPYTRLTQLNL--DRAELTKLQV 72
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFS 352
L L LDL N S + ++ + ++ E
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 353 GNIPAWIGEKLLRNLILR----LRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCI 408
GN + LL L +N L L +L L L N+ T+P+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
Query: 409 NNLT 412
Sbjct: 192 FGSH 195
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 28/209 (13%), Positives = 59/209 (28%), Gaps = 10/209 (4%)
Query: 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL 253
S ++ ++ +L+ L ++ +L LS L+ + + ++ L L
Sbjct: 7 SKVASHLEVNCDKRNLTA-----LPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQL 60
Query: 254 DLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI 313
+L E V L L L S + ++ + ++
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 314 PTWLHKFTRLEYLSLRENRLQGMISSV--LVVFDIGENGFSGNIPAWIGEKLLRNLILRL 371
+ + G+++ L + N + + L L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLL 179
Query: 372 RSNKFDGQIPAELCRLTSLHILDLSHNNF 400
+ N IP L L N +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.001
Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 7/164 (4%)
Query: 379 QIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTA-----MMNQENSMETDKEYDTFTIE 433
+P +L IL LS N + T + E +
Sbjct: 24 ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81
Query: 434 LSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIP 493
L + L + +D+S N L+ + L LQ L L N L P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 494 ENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLT 537
+ LE + + N L+ ++ L L L L +N+L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.003
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 471 EMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLN 530
E++ + + +N L +P ++ + + S NLL ++ T L+ LN
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 531 LSDNN 535
L
Sbjct: 62 LDRAE 66
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (127), Expect = 3e-08
Identities = 55/443 (12%), Positives = 107/443 (24%), Gaps = 22/443 (4%)
Query: 118 LVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGM----IPHQLGNLFNLQYLDLS 173
+ LD+ + + L + + + L LT I L L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 174 IDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLS 231
N + ++ + ++ L L L+ A LP+LQ L LS
Sbjct: 64 ---SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 232 ACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD 291
L ++ +L +L + L+ ++ F D
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 292 GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351
+ + L+ + + + S + + G
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 352 SG----NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRC 407
G LR L + G + +LS
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 408 INNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD 467
++ +E+ + + L +
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 468 IPEEMTNLLALQSLNLSHNFL----AGKIPENVGAMRSLESIDFSGNLLSGRIPQSISS- 522
L+ L L+ + + + A SL +D S N L +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 523 ----LTFLSHLNLSDNNLTGKIP 541
L L L D + ++
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEME 443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (118), Expect = 4e-07
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG----PIPDGLQNLTSLEHLDL 304
+ +LD+ E + L L + L I L+ +L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 305 RSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
RSN + + + +++ LQ
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 476 LALQSLNLSHNFLAGK-IPENVGAMRSLESIDFSGNLLSGR----IPQSISSLTFLSHLN 530
L +QSL++ L+ E + ++ + + L+ I ++ L+ LN
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 531 LSDNNLTGKIP 541
L N L
Sbjct: 62 LRSNELGDVGV 72
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 1e-04
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 236 HNSLPELPIANFSSLYTLDLSYNEFDNT---LVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
L + S L L L+ + ++ + + L L LDL N G
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416
Query: 293 L-----QNLTSLEHLDLRSNNFISSIPTWL 317
L Q LE L L + + L
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 5e-04
Identities = 18/94 (19%), Positives = 24/94 (25%), Gaps = 9/94 (9%)
Query: 257 YNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG----PIPDGLQNLTSLEHLDLRSNNFISS 312
+ L S L L L + L SL LDL +N +
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412
Query: 313 IPTWL-----HKFTRLEYLSLRENRLQGMISSVL 341
L LE L L + + L
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 8/107 (7%)
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN---TLVPSWLFGLSHLVFLDL 280
+Q L + L ++ + + L + S L L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 281 GFNSFGG----PIPDGLQ-NLTSLEHLDLRSNNFISSIPTWLHKFTR 322
N G + GLQ ++ L L++ + L R
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.002
Identities = 49/435 (11%), Positives = 98/435 (22%), Gaps = 37/435 (8%)
Query: 115 LKHLVYLDLSNNNFENN---QIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLD 171
L+ + L + I L +L ++L EL + H +
Sbjct: 26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ----- 80
Query: 172 LSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 231
L L+N + L + LQ+L
Sbjct: 81 -----TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 135
Query: 232 ACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPD 291
L +L + S +S+ + G + D
Sbjct: 136 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 195
Query: 292 GLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN--------------RLQGMI 337
L +L+ + + + L
Sbjct: 196 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 255
Query: 338 SSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSH 397
+ G + +L + G A L T L
Sbjct: 256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 315
Query: 398 NNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCM 457
+ + + + + E L V + + L R +
Sbjct: 316 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL-RVL 374
Query: 458 DLSGNNLSGD----IPEEMTNLLALQSLNLSHNFLAGKIPENVGA-----MRSLESIDFS 508
L+ ++S + + +L+ L+LS+N L + LE +
Sbjct: 375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 434
Query: 509 GNLLSGRIPQSISSL 523
S + + +L
Sbjct: 435 DIYWSEEMEDRLQAL 449
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 52/315 (16%), Positives = 91/315 (28%), Gaps = 15/315 (4%)
Query: 224 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFN 283
L+L+ L +SLPELP L +L S N T +P L L+ +
Sbjct: 39 QAHELELNNLGL-SSLPELP----PHLESLVASCNSL--TELPELPQSLKSLLVDNNNLK 91
Query: 284 SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVV 343
+ P S L+ SS + I++
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151
Query: 344 FDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGT 403
+ + I L + + + +L
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211
Query: 404 LPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNN 463
+ L + ++ Y T EL + + L + N
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271
Query: 464 LSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSL 523
S +I +L+ LN+S+N L ++P LE + S N L+ +P+ +L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNL 326
Query: 524 TFLSHLNLSDNNLTG 538
L++ N L
Sbjct: 327 K---QLHVEYNPLRE 338
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 51/331 (15%), Positives = 85/331 (25%), Gaps = 14/331 (4%)
Query: 241 ELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLE 300
L + L+L+ + +P HL L NS +P+ Q+L SL
Sbjct: 31 RLRDCLDRQAHELELNNLGL--SSLPELP---PHLESLVASCNSLT-ELPELPQSLKSLL 84
Query: 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIG 360
+ P + L ++ V + P+
Sbjct: 85 VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144
Query: 361 EKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENS 420
N + L + + A SL L + + Q
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204
Query: 421 METDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQS 480
T D ++ + L + L L
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264
Query: 481 LNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKI 540
N + +I SLE ++ S N L +P L L S N+L
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVP 320
Query: 541 PLGTQLQGFNASCFAGNNLCGAP-LPKNCTD 570
L L+ + N L P +P++ D
Sbjct: 321 ELPQNLKQLHVE---YNPLREFPDIPESVED 348
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.4 bits (90), Expect = 0.001
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 214 DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273
+ + ++ PSL+ L +S +N L ELP A L L S+N VP
Sbjct: 275 EIRSLCDLPPSLEELNVS----NNKLIELP-ALPPRLERLIASFNHL--AEVPEL---PQ 324
Query: 274 HLVFLDLGFNSFGGPIPDGLQNLTSL 299
+L L + +N PD +++ L
Sbjct: 325 NLKQLHVEYNPLRE-FPDIPESVEDL 349
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 46.0 bits (107), Expect = 3e-06
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 8/172 (4%)
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
C+ L E+P L L+ NE L HLV L+L N G P+
Sbjct: 15 CT-GRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLV----VFDIGE 348
+ + ++ L L N +L+ L+L +N++ ++ + +
Sbjct: 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
Query: 349 NGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNF 400
N + L P++ + + I DL H+ F
Sbjct: 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.8 bits (100), Expect = 1e-05
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 24/114 (21%)
Query: 455 RCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIP--------------------- 493
R + L+ +L+ + + LL + L+LSHN L P
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 494 ENVGAMRSLESIDFSGNLL-SGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQL 546
+ V + L+ + N L Q + S L LNL N+L + + +L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.6 bits (97), Expect = 3e-05
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 6/117 (5%)
Query: 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGE 361
L L + ++ L + + +L L NRL+ + ++ + + S N +
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 362 KLLRN--LILRLRSNKF-DGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMM 415
L L +N+ L L +L+L N+ L M+
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (90), Expect = 3e-04
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 9/119 (7%)
Query: 187 LENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 246
L L L L+ HLDL+ L +L+ L++ S + +AN
Sbjct: 10 LTVLCHLEQLLLVTHLDLSHNRLRALPPAL------AALRCLEVLQASDNALENVDGVAN 63
Query: 247 FSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSF---GGPIPDGLQNLTSLEHL 302
L L L N + L LV L+L NS G + L S+ +
Sbjct: 64 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 5e-04
Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 259
+ L L DL+ L + L LS L P ++L L++
Sbjct: 1 RVLHLAHKDLTVLCHL----EQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQAS 51
Query: 260 FDNTLVPSWLFGLSHLVFLDLGFNSF-GGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLH 318
+ + L L L L N L + L L+L+ N+ +
Sbjct: 52 DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQE 110
Query: 319 KFTRL 323
+ +
Sbjct: 111 RLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 7e-04
Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 20/125 (16%)
Query: 120 YLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNP 179
L L++ + + L + + H+DLS L + P L L L+ L S +
Sbjct: 2 VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57
Query: 180 IS-------FSFLYLEN--------FSWLSGLSLLKHLDLTGVDLSTASDWFL-VTNMLP 223
+ L L N L L L+L G L + MLP
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 224 SLQVL 228
S+ +
Sbjct: 118 SVSSI 122
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 11/198 (5%)
Query: 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYL 170
+ DL + L + + ++ +L ++L ++T + P + L
Sbjct: 36 TQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAPLKNLTKITELEL 92
Query: 171 DLSIDTHNPISFSFLYLENFSWLSGLSLLK---HLDLTGVDLSTASDWFLVTNMLPSLQV 227
+ + ++ S L + + L L
Sbjct: 93 SGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTN 152
Query: 228 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGG 287
L+ + P+AN S L TL N+ + S L L +L+ + L N
Sbjct: 153 LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD---ISPLASLPNLIEVHLKNNQISD 209
Query: 288 PIPDGLQNLTSLEHLDLR 305
P L N ++L + L
Sbjct: 210 VSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 4e-05
Identities = 32/217 (14%), Positives = 60/217 (27%), Gaps = 11/217 (5%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS- 173
L + + + +N + V + + + +T + + L NL L+L
Sbjct: 18 LANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 174 -IDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 232
T + + + T + L L
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 233 CSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDG 292
+ I+ + L L + L LS L L N P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 293 LQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLR 329
L +L +L + L++N P L + L ++L
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 35/263 (13%), Positives = 81/263 (30%), Gaps = 53/263 (20%)
Query: 271 GLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330
L++ + + G ++ + +L + L +++I + L L L++
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKD 72
Query: 331 NRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSL 390
N++ + LT +
Sbjct: 73 NQITDLAPL---------------------------------------------KNLTKI 87
Query: 391 HILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTM 450
L+LS N ++ ++ TD L +L + + + +
Sbjct: 88 TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL 147
Query: 451 LKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510
L LS N + NL L +L N ++ P + ++ +L + N
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205
Query: 511 LLSGRIPQSISSLTFLSHLNLSD 533
+S P +++ + L + L++
Sbjct: 206 QISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.001
Identities = 26/204 (12%), Positives = 57/204 (27%), Gaps = 11/204 (5%)
Query: 341 LVVFDIGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNN 399
+ G++ + + + L + L + L +L L+L N
Sbjct: 21 AIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74
Query: 400 FSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDL 459
+ P + + + + L + + + L L
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 460 SGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQS 519
+ I LS + + L ++ N +S P
Sbjct: 135 YLDL--NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 520 ISSLTFLSHLNLSDNNLTGKIPLG 543
++SL L ++L +N ++ PL
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLA 214
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 43.3 bits (100), Expect = 6e-05
Identities = 37/325 (11%), Positives = 90/325 (27%), Gaps = 29/325 (8%)
Query: 249 SLYTLDLSYNEF---DNTLVPSWLFGLSHLVFLDLGFNSFGGP----IPDGLQNLTSLEH 301
S+ L + D V + L + + L N+ G + + + + LE
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 302 LDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGE 361
+ S+ F + + + R L + + + L G I
Sbjct: 64 AEF-SDIFTGRVKDEIPEALR--LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 362 KLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM 421
L +L L + ++ N L +E +
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180
Query: 422 ETDKEYDTFTIELSILVVMKGRELAYNTML--------KLVRCMDLSGNNLSGDIPEEMT 473
T+++ + L + + S + +
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 240
Query: 474 NLLALQSLNLSHNFLAGKIPENVGAM------RSLESIDFSGNLLSGRIPQSISS----- 522
+ L+ L L+ L+ + V L+++ N + +++ +
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300
Query: 523 LTFLSHLNLSDNNLTGKIPLGTQLQ 547
+ L L L+ N + + + +++
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIR 325
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.1 bits (89), Expect = 0.001
Identities = 46/328 (14%), Positives = 99/328 (30%), Gaps = 12/328 (3%)
Query: 97 YDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGM 156
D T++ + LL+ + + LS N + S + L AE + +
Sbjct: 12 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD--LEIAEFSDI 69
Query: 157 IPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWF 216
++ + L + L+ S + + + + T +
Sbjct: 70 FTGRVKDEIPEALRLLL---QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126
Query: 217 LVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLV 276
+ N Q A +L N L ++ N +N + W
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186
Query: 277 FLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336
L G P+G+++ LE L + + L++ +
Sbjct: 187 LLHTVKMVQNGIRPEGIEH-LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245
Query: 337 ISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC-----RLTSLH 391
L + G + + A+ + + LRL+ N+ + L ++ L
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305
Query: 392 ILDLSHNNFSGTLPRCINNLTAMMNQEN 419
L+L+ N FS ++ + + +
Sbjct: 306 FLELNGNRFSE-EDDVVDEIREVFSTRG 332
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 15/198 (7%)
Query: 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173
+ +L + + V + S+ I + +++ + + L N+ L L+
Sbjct: 22 AFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76
Query: 174 IDTHNPIS----FSFLYLENFSWLSGLSLLKHL-DLTGVDLSTASDWFLVTNMLPSLQVL 228
N ++ + L + +L + L + S + + L L
Sbjct: 77 ---GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133
Query: 229 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGP 288
+ I S L LD E + L GL+ L L L N
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 193
Query: 289 IPDGLQNLTSLEHLDLRS 306
L L +L+ L+L S
Sbjct: 194 --RALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 5e-04
Identities = 22/188 (11%), Positives = 59/188 (31%), Gaps = 7/188 (3%)
Query: 346 IGENGFSGNIPAWIGEKLLRNL-ILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTL 404
I +N ++ + + L ++ + ++ + L ++ L L+ N +
Sbjct: 27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD-- 82
Query: 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNL 464
+ + NL + K+ + + + + + S
Sbjct: 83 IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142
Query: 465 SGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLT 524
+ I + + LS + + L+++ S N +S ++++ L
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLK 200
Query: 525 FLSHLNLS 532
L L L
Sbjct: 201 NLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 30/176 (17%), Positives = 68/176 (38%), Gaps = 13/176 (7%)
Query: 110 PSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQY 169
+ +L + + +N++ ++ Q + ++ ++ + L+ +LT + L NL NL +
Sbjct: 40 VTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDI--KPLANLKNLGW 94
Query: 170 LDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 229
L L + +S + S + + ++ S + + + +
Sbjct: 95 LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR 154
Query: 230 LSACSLHNSLPE-----LPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDL 280
L+ + +P+A + L L LS N + L GL +L L+L
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---LRALAGLKNLDVLEL 207
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.002
Identities = 22/228 (9%), Positives = 59/228 (25%), Gaps = 20/228 (8%)
Query: 121 LDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180
+ +IP + + +L + +L+ +++S + +
Sbjct: 13 FLCQESKVT--EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Query: 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLP 240
+ ++ + L + + L ++ + + L +SL
Sbjct: 69 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128
Query: 241 ELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSH----------------LVFLDLGFNS 284
++ + ++ + N F S + L+ N+
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188
Query: 285 FGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENR 332
D + LD+ S L +L S +
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.002
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 264 LVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSI 313
L G S V LD+ GL+NL L + + ++
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (83), Expect = 0.004
Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 11/238 (4%)
Query: 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNN 308
S ++ T +PS L + + L LE +++ N+
Sbjct: 9 SNRVFLCQESKV--TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64
Query: 309 FISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLI 368
+ I + + E + + ++ + I + I
Sbjct: 65 VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124
Query: 369 LRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYD 428
L+ D Q + + + LS + L + + +
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184
Query: 429 TFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHN 486
+ + +D+S + + NL L++ + +
Sbjct: 185 DNNNLEELPNDVFHG-------ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.002
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 9/125 (7%)
Query: 107 KINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGM--IPHQLGNL 164
+ +P L+ V L+ ++ + + + L ++LS L + + +
Sbjct: 33 RSDPDLVAQNIDVVLNRRSSM--AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 90
Query: 165 FNLQYLDLSIDTHNPIS-FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 223
NL+ L+LS + + L L L+ ++ + P
Sbjct: 91 PNLKILNLSGNELKSERELDKIKGLKLEELW----LDGNSLSDTFRDQSTYISAIRERFP 146
Query: 224 SLQVL 228
L L
Sbjct: 147 KLLRL 151
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.003
Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 9/126 (7%)
Query: 216 FLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHL 275
+ S Q L L L I L+ + + + L
Sbjct: 15 IMSKRYDGSQQALDLKGLRSDPDLVAQNI-----DVVLNRRSS--MAATLRIIEENIPEL 67
Query: 276 VFLDLGFN--SFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333
+ L+L N + +Q +L+ L+L N S K +LE L L N L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 334 QGMISS 339
Sbjct: 128 SDTFRD 133
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.6 bits (83), Expect = 0.004
Identities = 31/190 (16%), Positives = 53/190 (27%), Gaps = 9/190 (4%)
Query: 115 LKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSI 174
L + L N + V + + + R + + + L NL ++ S
Sbjct: 17 LAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN 71
Query: 175 -DTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 233
+ L ++ + L + T F +
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 234 SLHNSLPELPIANFSSLYTLDLSYNEFDNTLV-PSWLFGLSHLVFLDLGFNSFGGPIPDG 292
L S + + S T N N + L L+ L LD+ N
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SV 189
Query: 293 LQNLTSLEHL 302
L LT+LE L
Sbjct: 190 LAKLTNLESL 199
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 636 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.98 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.79 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.67 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.65 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.46 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.45 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.44 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.44 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.43 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.41 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.24 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.19 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.17 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.04 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.23 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.14 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.59 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.53 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.89 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.65 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=1.1e-40 Score=339.50 Aligned_cols=124 Identities=34% Similarity=0.611 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCcc--cccEEeCCCC--CcEEEEEcCCCCCCCCCCccccccCCCCCcc
Q 006657 30 GCIQSERKALLRFKQDLKDPANRLASWS-DGNCCT--WAGVVCNDST--GRVLELRLGNPFLHDDEPFWLEDYDDETSKL 104 (636)
Q Consensus 30 ~~~~~~~~~Ll~~k~~~~~~~~~l~~W~-~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l 104 (636)
-|.++|++||++||+++.+|. .+++|. ++|||. |.||+|+..+ +||++|+|+++ ++
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~------------------~l 62 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------------NL 62 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------------CC
T ss_pred CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC------------------CC
Confidence 499999999999999998874 689997 789994 9999998643 48999999887 44
Q ss_pred ee--ecCccccCCCCCCEEeCCC-CCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEecc
Q 006657 105 IG--KINPSLLDLKHLVYLDLSN-NNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLS 173 (636)
Q Consensus 105 ~g--~i~~~l~~l~~L~~L~Ls~-n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 173 (636)
.| .+|+++++|++|++|+|++ |.++|. +|..|+++++|++|++++|++.+..|..+..+.+|++++++
T Consensus 63 ~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~ 133 (313)
T d1ogqa_ 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133 (313)
T ss_dssp SSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred CCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccc
Confidence 44 4566666666666666654 555543 55555555555555555555554444444444444433333
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.98 E-value=2.5e-32 Score=277.16 Aligned_cols=258 Identities=35% Similarity=0.556 Sum_probs=204.1
Q ss_pred CCcEEEcccCCCCCC--CChhhhcCCCCCcEEEccC-CcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCE
Q 006657 249 SLYTLDLSYNEFDNT--LVPSWLFGLSHLVFLDLGF-NSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEY 325 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 325 (636)
+++.|+|++|.++|. +| ..++++++|++|+|++ |+++|.+|..++++++|++|+|++|++.+..+..+..+.+|++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp-~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCC-hHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 455666666666552 44 5666677777777765 5666667777777777777777777776666666666666666
Q ss_pred EEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCC-CEEEccCccCcccc
Q 006657 326 LSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSL-HILDLSHNNFSGTL 404 (636)
Q Consensus 326 L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~ 404 (636)
+++++|.+.+ .+|..+.. ++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..
T Consensus 130 l~l~~N~~~~------------------~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~ 190 (313)
T d1ogqa_ 130 LDFSYNALSG------------------TLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp EECCSSEEES------------------CCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred cccccccccc------------------cCchhhcc-Ccccceeeccccccccccccccccccccccccccccccccccc
Confidence 6666665543 45555553 6777777788888878888888877775 88999999999888
Q ss_pred chhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCC
Q 006657 405 PRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLS 484 (636)
Q Consensus 405 p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls 484 (636)
|..+.++. ...++++++...|.+|..+..+++++.++++
T Consensus 191 ~~~~~~l~-----------------------------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~ 229 (313)
T d1ogqa_ 191 PPTFANLN-----------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp CGGGGGCC-----------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred cccccccc-----------------------------------------ccccccccccccccccccccccccccccccc
Confidence 88776543 3579999999999999999999999999999
Q ss_pred CccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC-CCCCCC
Q 006657 485 HNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN-NLCGAP 563 (636)
Q Consensus 485 ~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~lc~~~ 563 (636)
+|.+++.+| .++.+++|+.|+|++|+++|.+|..+..+++|++|||++|+++|.+|..+.++.++...+.+| .+||.|
T Consensus 230 ~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCC
Confidence 999998766 588899999999999999999999999999999999999999999999888889999999999 799998
Q ss_pred CCCCCC
Q 006657 564 LPKNCT 569 (636)
Q Consensus 564 ~~~~c~ 569 (636)
++ .|+
T Consensus 309 lp-~c~ 313 (313)
T d1ogqa_ 309 LP-ACT 313 (313)
T ss_dssp SS-CCC
T ss_pred CC-CCC
Confidence 75 663
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=7.7e-27 Score=243.14 Aligned_cols=335 Identities=25% Similarity=0.331 Sum_probs=221.6
Q ss_pred CCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCc
Q 006657 101 TSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180 (636)
Q Consensus 101 ~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~ 180 (636)
...+.+.++ ...+.+|++|+++++.++. + +.++.+++|++|++++|++++ +| .++++++|++|++++|.+...
T Consensus 31 ~~~~~~~~~--~~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i 103 (384)
T d2omza2 31 KTNVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI 103 (384)
T ss_dssp CSSTTSEEC--HHHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCccC--HHHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccc
Confidence 345555554 3467889999999999984 4 467889999999999999985 44 399999999999999988654
Q ss_pred ccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCC------------------c
Q 006657 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE------------------L 242 (636)
Q Consensus 181 ~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------------------~ 242 (636)
+ .++++++|+.|+++++.+++... ......+.......+.+....+. .
T Consensus 104 ~----------~l~~l~~L~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (384)
T d2omza2 104 T----------PLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK 169 (384)
T ss_dssp G----------GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG
T ss_pred c----------ccccccccccccccccccccccc----ccccccccccccccccccccccccccccccccccccccchhh
Confidence 2 27889999999999999887753 33456677777766655422110 0
Q ss_pred cccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCC
Q 006657 243 PIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTR 322 (636)
Q Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 322 (636)
.+...+.........|... .. ..+..+++++.+++++|.+++..| +...++|++|++++|+++. + ..+..+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~ 242 (384)
T d2omza2 170 PLANLTTLERLDISSNKVS--DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTN 242 (384)
T ss_dssp GGTTCTTCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTT
T ss_pred hhccccccccccccccccc--cc-cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccc
Confidence 1112222223333333321 11 334445555555555555554332 2344555555555555542 2 23445555
Q ss_pred CCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCcc
Q 006657 323 LEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSG 402 (636)
Q Consensus 323 L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 402 (636)
|+.|++++|.+++ ++. +. .+++|+.|++++|++++.. .+..++.++.++++.|++++
T Consensus 243 L~~L~l~~n~l~~-------------------~~~-~~-~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~ 299 (384)
T d2omza2 243 LTDLDLANNQISN-------------------LAP-LS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED 299 (384)
T ss_dssp CSEEECCSSCCCC-------------------CGG-GT-TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC
T ss_pred cchhccccCccCC-------------------CCc-cc-ccccCCEeeccCcccCCCC--cccccccccccccccccccc
Confidence 5555555555442 222 22 2667777777777776432 35667777777777777764
Q ss_pred ccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEe
Q 006657 403 TLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLN 482 (636)
Q Consensus 403 ~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 482 (636)
. + .+. .++.++.|++++|++++.. .+..+++|++|+
T Consensus 300 ~-~-~~~----------------------------------------~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~ 335 (384)
T d2omza2 300 I-S-PIS----------------------------------------NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF 335 (384)
T ss_dssp C-G-GGG----------------------------------------GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred c-c-ccc----------------------------------------hhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence 2 1 122 2344888999999998653 378899999999
Q ss_pred CCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCC
Q 006657 483 LSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDN 534 (636)
Q Consensus 483 Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 534 (636)
+++|++++ ++ .++++++|++|++++|++++..| +.++++|++|++++|
T Consensus 336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 99999984 44 58999999999999999997655 888999999999987
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=9.1e-26 Score=234.91 Aligned_cols=323 Identities=24% Similarity=0.318 Sum_probs=240.5
Q ss_pred CcEEEEEcCCCCCCCCCCccccccCCCCCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCcc
Q 006657 74 GRVLELRLGNPFLHDDEPFWLEDYDDETSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAEL 153 (636)
Q Consensus 74 ~~v~~L~L~~~~l~~~~~~~l~~~~~~~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l 153 (636)
..+++|+++++.+. .+ ..+..+++|++|++++|++++ +| .++++++|++|++++|++
T Consensus 44 ~~l~~L~l~~~~I~-------------------~l-~gl~~L~nL~~L~Ls~N~l~~--l~-~l~~L~~L~~L~L~~n~i 100 (384)
T d2omza2 44 DQVTTLQADRLGIK-------------------SI-DGVEYLNNLTQINFSNNQLTD--IT-PLKNLTKLVDILMNNNQI 100 (384)
T ss_dssp TTCCEEECCSSCCC-------------------CC-TTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCCCC-------------------Cc-cccccCCCCCEEeCcCCcCCC--Cc-cccCCccccccccccccc
Confidence 35889999887433 12 247789999999999999995 55 389999999999999999
Q ss_pred CCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCC-----------------hh
Q 006657 154 TGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASD-----------------WF 216 (636)
Q Consensus 154 ~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~-----------------~~ 216 (636)
.+. + .++++++|+.|+++++.+..... ......+.......+.+..... ..
T Consensus 101 ~~i-~-~l~~l~~L~~L~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 168 (384)
T d2omza2 101 ADI-T-PLANLTNLTGLTLFNNQITDIDP----------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 168 (384)
T ss_dssp CCC-G-GGTTCTTCCEEECCSSCCCCCGG----------GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC
T ss_pred ccc-c-ccccccccccccccccccccccc----------ccccccccccccccccccccccccccccccccccccccchh
Confidence 854 3 38899999999999988765432 2233344444444433322210 01
Q ss_pred hhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCC
Q 006657 217 LVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNL 296 (636)
Q Consensus 217 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 296 (636)
..+...+.........|.... . .....+++++.+++++|.+++..+ +...++|++|++++|+++. + +.+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~-~-~~l~~l 240 (384)
T d2omza2 169 KPLANLTTLERLDISSNKVSD--I-SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD-I-GTLASL 240 (384)
T ss_dssp GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-C-GGGGGC
T ss_pred hhhcccccccccccccccccc--c-cccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCC-c-chhhcc
Confidence 123344455555555554432 2 457788899999999999985432 4567899999999999984 3 468889
Q ss_pred CCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcC
Q 006657 297 TSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKF 376 (636)
Q Consensus 297 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l 376 (636)
++|+.|++++|.+++..+ +..+++|++|++++|++++ ++... .++.++.+.+..|.+
T Consensus 241 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~-------------------~~~~~--~~~~l~~l~~~~n~l 297 (384)
T d2omza2 241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-------------------ISPLA--GLTALTNLELNENQL 297 (384)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-------------------CGGGT--TCTTCSEEECCSSCC
T ss_pred cccchhccccCccCCCCc--ccccccCCEeeccCcccCC-------------------CCccc--ccccccccccccccc
Confidence 999999999999986544 7888999999999998873 33211 367888899999988
Q ss_pred cccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccE
Q 006657 377 DGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRC 456 (636)
Q Consensus 377 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 456 (636)
++ +..+..+++++.|++++|++++..| +..+ ++|++
T Consensus 298 ~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l----------------------------------------~~L~~ 333 (384)
T d2omza2 298 ED--ISPISNLKNLTYLTLYFNNISDISP--VSSL----------------------------------------TKLQR 333 (384)
T ss_dssp SC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGC----------------------------------------TTCCE
T ss_pred cc--ccccchhcccCeEECCCCCCCCCcc--cccC----------------------------------------CCCCE
Confidence 75 3457788999999999999986432 3333 34899
Q ss_pred EECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCC
Q 006657 457 MDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGN 510 (636)
Q Consensus 457 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N 510 (636)
|++++|++++ ++ .++++++|++|++++|++++..| +.++++|+.|+|++|
T Consensus 334 L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 334 LFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp EECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred EECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 9999999984 44 68999999999999999997655 899999999999998
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.6e-23 Score=210.85 Aligned_cols=274 Identities=19% Similarity=0.242 Sum_probs=199.3
Q ss_pred CCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcE
Q 006657 198 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVF 277 (636)
Q Consensus 198 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 277 (636)
.++.+|-+++.++..|. .+ .+++++|++++|+++ .+|...|.++++|++|++++|.+. .+++..|.++++|++
T Consensus 11 ~~~~~~C~~~~L~~lP~---~l--~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~ 83 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPK---DL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLER 83 (305)
T ss_dssp ETTEEECTTSCCCSCCC---SC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCE
T ss_pred cCCEEEecCCCCCccCC---CC--CCCCCEEECcCCcCC-CcChhHhhcccccccccccccccc-ccchhhhhCCCccCE
Confidence 34556666666665543 12 256777788877776 455356778888888888888887 455477888888888
Q ss_pred EEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccch
Q 006657 278 LDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPA 357 (636)
Q Consensus 278 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~ 357 (636)
|++++|+++ .+|..+ ...++.|++++|.+.+..+..+.....+..++...|..... +..+.
T Consensus 84 L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----------------~~~~~ 144 (305)
T d1xkua_ 84 LYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------GIENG 144 (305)
T ss_dssp EECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------GBCTT
T ss_pred ecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc----------------CCCcc
Confidence 888888887 455433 35788888888888876666677777777777777654311 11222
Q ss_pred HHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEE
Q 006657 358 WIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSIL 437 (636)
Q Consensus 358 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 437 (636)
.+. .+++|+.+++++|.++ .+|..+ .++|+.|++++|..++..+..+.+++.
T Consensus 145 ~~~-~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~------------------------ 196 (305)
T d1xkua_ 145 AFQ-GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNN------------------------ 196 (305)
T ss_dssp GGG-GCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTT------------------------
T ss_pred ccc-cccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhcccc------------------------
Confidence 222 3678888888888877 345443 578899999999888777776665544
Q ss_pred EEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCc
Q 006657 438 VVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIP 517 (636)
Q Consensus 438 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p 517 (636)
+++|++++|.+++..+..+.++++|++|+|++|+++ .+|.++..+++|++|+|++|+|+...+
T Consensus 197 ----------------l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~ 259 (305)
T d1xkua_ 197 ----------------LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259 (305)
T ss_dssp ----------------CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred ----------------ccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccCh
Confidence 778999999999888888899999999999999998 678889999999999999999985433
Q ss_pred hhc------cCCCCCCeeeccCCcCc-ccCCC
Q 006657 518 QSI------SSLTFLSHLNLSDNNLT-GKIPL 542 (636)
Q Consensus 518 ~~l------~~l~~L~~L~ls~N~l~-g~ip~ 542 (636)
..| ....+|+.|++++|++. ..++.
T Consensus 260 ~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~ 291 (305)
T d1xkua_ 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 291 (305)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred hhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence 333 45678999999999985 34443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=2.4e-23 Score=209.56 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=127.2
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCC--cccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFI--SSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
.++.|++..|.+.+..+..+.....++.++...|... ...+..+..+++|+++++++|.++
T Consensus 101 ~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~----------------- 163 (305)
T d1xkua_ 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT----------------- 163 (305)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-----------------
T ss_pred hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-----------------
Confidence 3444444444444333333444444555555444322 222344555666666666666554
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
.+|..+ +++++.|++++|..++..+..+..++.++.|++++|++++..+..+.++++
T Consensus 164 --~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~------------------ 220 (305)
T d1xkua_ 164 --TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH------------------ 220 (305)
T ss_dssp --SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT------------------
T ss_pred --ccCccc---CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc------------------
Confidence 233221 456777777777777777888888899999999999998776766665554
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCcc------ccCCCCCCEE
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPEN------VGAMRSLESI 505 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~------~~~l~~L~~L 505 (636)
|++|+|++|+++ .+|+.+..+++|++|+|++|+++..-... ...+.+|+.|
T Consensus 221 ----------------------L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L 277 (305)
T d1xkua_ 221 ----------------------LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277 (305)
T ss_dssp ----------------------CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred ----------------------ceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEE
Confidence 788999999998 67889999999999999999998543333 3456889999
Q ss_pred eCCCCCCC--ccCchhccCCCCCCee
Q 006657 506 DFSGNLLS--GRIPQSISSLTFLSHL 529 (636)
Q Consensus 506 ~Ls~N~l~--~~~p~~l~~l~~L~~L 529 (636)
+|++|.+. ...|..|.-+.....+
T Consensus 278 ~L~~N~~~~~~~~~~~f~~~~~~~~~ 303 (305)
T d1xkua_ 278 SLFSNPVQYWEIQPSTFRCVYVRAAV 303 (305)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred ECCCCcCccCcCCHhHhcccccCccc
Confidence 99999885 3445555554444333
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.5e-24 Score=216.07 Aligned_cols=238 Identities=21% Similarity=0.194 Sum_probs=161.6
Q ss_pred EEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEcc-
Q 006657 227 VLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLR- 305 (636)
Q Consensus 227 ~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~- 305 (636)
.++.++++++ .+|. .+ .+++++|+|++|+++ .+++.+|.++++|++|++++|++.+..+..+..++.++.++..
T Consensus 15 ~v~c~~~~L~-~iP~-~i--p~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~ 89 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPV-GI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (284)
T ss_dssp EEECCSSCCS-SCCT-TC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCC-ccCC-CC--CCCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence 3445555554 4442 22 134566666666665 4454556666666666666666655555555555555555543
Q ss_pred CCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccC
Q 006657 306 SNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELC 385 (636)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 385 (636)
.+.++...|..|.++++|++|++++| .+....+..+.
T Consensus 90 ~~~~~~l~~~~~~~l~~L~~L~l~~n-------------------------------------------~~~~~~~~~~~ 126 (284)
T d1ozna_ 90 NAQLRSVDPATFHGLGRLHTLHLDRC-------------------------------------------GLQELGPGLFR 126 (284)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTS-------------------------------------------CCCCCCTTTTT
T ss_pred ccccccccchhhcccccCCEEecCCc-------------------------------------------ccccccccccc
Confidence 33344344445555555555555544 44434445566
Q ss_pred CCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccC
Q 006657 386 RLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLS 465 (636)
Q Consensus 386 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 465 (636)
..++|+.+++++|++++..+..|..++. |+.|++++|+++
T Consensus 127 ~~~~L~~l~l~~N~l~~i~~~~f~~~~~----------------------------------------L~~L~l~~N~l~ 166 (284)
T d1ozna_ 127 GLAALQYLYLQDNALQALPDDTFRDLGN----------------------------------------LTHLFLHGNRIS 166 (284)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTT----------------------------------------CCEEECCSSCCC
T ss_pred hhcccchhhhccccccccChhHhccccc----------------------------------------hhhcccccCccc
Confidence 6777888888888887555555554443 778888888888
Q ss_pred ccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCc
Q 006657 466 GDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQ 545 (636)
Q Consensus 466 g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~ 545 (636)
+..+..|.++++|+++++++|++++..|..|..+++|++||+++|++.+..|..+..+++|++|++++|++.|.++..+.
T Consensus 167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l 246 (284)
T d1ozna_ 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246 (284)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHH
Confidence 77788888999999999999999988899999999999999999999988888899999999999999999998876655
Q ss_pred cCCcccc
Q 006657 546 LQGFNAS 552 (636)
Q Consensus 546 ~~~~~~~ 552 (636)
..+++..
T Consensus 247 ~~~l~~~ 253 (284)
T d1ozna_ 247 WAWLQKF 253 (284)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 5555433
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.8e-24 Score=213.10 Aligned_cols=252 Identities=21% Similarity=0.228 Sum_probs=173.8
Q ss_pred cEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEE
Q 006657 200 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLD 279 (636)
Q Consensus 200 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 279 (636)
..++.++.+++..|. .+ .+++++|+|++|+++ .+|...|.++++|++|++++|.+. .+++..+..+..++.+.
T Consensus 14 ~~v~c~~~~L~~iP~---~i--p~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~ 86 (284)
T d1ozna_ 14 VTTSCPQQGLQAVPV---GI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLD 86 (284)
T ss_dssp CEEECCSSCCSSCCT---TC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred eEEEcCCCCCCccCC---CC--CCCCCEEECcCCcCC-CCCHHHhhcccccccccccccccc-ccccccccccccccccc
Confidence 456788888887764 22 357899999999998 566578999999999999999998 45558888899999998
Q ss_pred cc-CCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchH
Q 006657 280 LG-FNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAW 358 (636)
Q Consensus 280 L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~ 358 (636)
.. .+.++...|..+.++++|++|++++|.+....+..+...++|+.+++++|+++ .+|.
T Consensus 87 ~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-------------------~i~~- 146 (284)
T d1ozna_ 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------------------ALPD- 146 (284)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------CCCT-
T ss_pred cccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-------------------ccCh-
Confidence 75 56677666888999999999999999998777777777888888888887776 2222
Q ss_pred HHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEE
Q 006657 359 IGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILV 438 (636)
Q Consensus 359 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 438 (636)
..|..+++|+.|++++|++++..+..|.++++
T Consensus 147 -----------------------~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~------------------------- 178 (284)
T d1ozna_ 147 -----------------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHS------------------------- 178 (284)
T ss_dssp -----------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-------------------------
T ss_pred -----------------------hHhccccchhhcccccCcccccchhhhccccc-------------------------
Confidence 23444455556666666555444444444333
Q ss_pred EeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCch
Q 006657 439 VMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQ 518 (636)
Q Consensus 439 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~ 518 (636)
|+.+++++|++++..|..|.++++|++|++++|++++..|..|+.+++|++|++++|.+...-+.
T Consensus 179 ---------------L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 179 ---------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (284)
T ss_dssp ---------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ---------------cchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence 55566666666656666666666666666666666666666666666677777777666643221
Q ss_pred hccCCCCCCeeeccCCcCcccCCC
Q 006657 519 SISSLTFLSHLNLSDNNLTGKIPL 542 (636)
Q Consensus 519 ~l~~l~~L~~L~ls~N~l~g~ip~ 542 (636)
. .-...++.+....+++.|..|.
T Consensus 244 ~-~l~~~l~~~~~~~~~~~C~~p~ 266 (284)
T d1ozna_ 244 R-PLWAWLQKFRGSSSEVPCSLPQ 266 (284)
T ss_dssp H-HHHHHHHHCCSEECCCBEEESG
T ss_pred h-HHHHHHHhCcCCCCceEeCCch
Confidence 1 0112344555566666666554
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.9e-23 Score=200.95 Aligned_cols=207 Identities=21% Similarity=0.233 Sum_probs=153.2
Q ss_pred CCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCC
Q 006657 272 LSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGF 351 (636)
Q Consensus 272 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l 351 (636)
...+.+.+.++++++ .+|..+. +++++|+|++|++++..+..|.++++|++|++++|+++
T Consensus 9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~----------------- 68 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT----------------- 68 (266)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----------------
T ss_pred cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-----------------
Confidence 344455555665555 3454442 45666666666666554556666666666666666655
Q ss_pred ccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccce
Q 006657 352 SGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFT 431 (636)
Q Consensus 352 ~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~ 431 (636)
.+|.. . .+++|++|++++|++++ .+..+..+++|+.|++++|++.+..+..+..+.
T Consensus 69 --~l~~~-~-~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~------------------- 124 (266)
T d1p9ag_ 69 --KLQVD-G-TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------------------- 124 (266)
T ss_dssp --EEECC-S-CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-------------------
T ss_pred --ccccc-c-ccccccccccccccccc-cccccccccccccccccccccceeecccccccc-------------------
Confidence 22211 1 25667777777777663 466778888999999999988855555444333
Q ss_pred eeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCC
Q 006657 432 IELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNL 511 (636)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~ 511 (636)
.++.|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|||++|+
T Consensus 125 ---------------------~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 183 (266)
T d1p9ag_ 125 ---------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (266)
T ss_dssp ---------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCC
Confidence 37889999999997777788899999999999999998888889999999999999999
Q ss_pred CCccCchhccCCCCCCeeeccCCcCcccCCCCC
Q 006657 512 LSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGT 544 (636)
Q Consensus 512 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 544 (636)
|+ .+|+.+..+++|++|+|++|++.|.|...+
T Consensus 184 L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~ 215 (266)
T d1p9ag_ 184 LY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILY 215 (266)
T ss_dssp CC-CCCTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred Cc-ccChhHCCCCCCCEEEecCCCCCCCcchHH
Confidence 99 789889999999999999999999876443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-21 Score=192.42 Aligned_cols=202 Identities=23% Similarity=0.212 Sum_probs=169.4
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
.+...+.+.|.+++.++ .+|..+. +++++|+|++|++++..+..|.++++|++|++++|+++.++ .
T Consensus 7 ~~~~~~~~v~C~~~~L~--~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~----------~ 72 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ----------V 72 (266)
T ss_dssp ECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE----------C
T ss_pred cccCCCeEEEccCCCCC--eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc----------c
Confidence 34556677788888888 4776653 57899999999988666677888999999999998876532 2
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
++.+++|++|++++|.++..+. .+..+++|+.|++++|.+.+..+ ..+..+.+++.|++++|.++ .+++..+..+
T Consensus 73 ~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l 147 (266)
T d1p9ag_ 73 DGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELK-TLPPGLLTPT 147 (266)
T ss_dssp CSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred cccccccccccccccccccccc---ccccccccccccccccccceeec-cccccccccccccccccccc-eecccccccc
Confidence 5678899999999999887755 56778999999999999875444 67889999999999999998 6666888899
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
++++++++++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 148 ~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 99999999999999888888999999999999999998 78888888999999999999875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=6.1e-19 Score=180.17 Aligned_cols=310 Identities=22% Similarity=0.256 Sum_probs=184.4
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCC
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGL 196 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l 196 (636)
++++|||+++.++ .+|+. .++|++|++++|+++ .+|..+ .+|+.|++++|+++..+ . + .
T Consensus 39 ~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l~--~--------l--p 97 (353)
T d1jl5a_ 39 QAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALS--D--------L--P 97 (353)
T ss_dssp TCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCCC--S--------C--C
T ss_pred CCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchhh--h--------h--c
Confidence 5777777777776 36653 467777777777777 566543 46777777777665431 0 1 1
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCc
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLV 276 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 276 (636)
+.|++|++++|.+...+. .+.+++|+.|+++++.+..... ....+..+.+..+.... . ..+..++.++
T Consensus 98 ~~L~~L~L~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~~--~-~~l~~l~~l~ 165 (353)
T d1jl5a_ 98 PLLEYLGVSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEE--L-PELQNLPFLT 165 (353)
T ss_dssp TTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSS--C-CCCTTCTTCC
T ss_pred cccccccccccccccccc----hhhhccceeecccccccccccc-----ccccccchhhccccccc--c-ccccccccce
Confidence 357777777777776653 4567777777777777653221 23456666666555432 1 3455667777
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccccccc--CccceEEEccCCCCccc
Q 006657 277 FLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMI--SSVLVVFDIGENGFSGN 354 (636)
Q Consensus 277 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~L~~L~l~~n~l~g~ 354 (636)
.+++++|.... .+. .....+.+...++.+. .++ .+..++.|+.+++++|...... +..+..+++..+.+..
T Consensus 166 ~L~l~~n~~~~-~~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~- 238 (353)
T d1jl5a_ 166 AIYADNNSLKK-LPD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD- 238 (353)
T ss_dssp EEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-
T ss_pred ecccccccccc-ccc---cccccccccccccccc-ccc-cccccccccccccccccccccccccccccccccccccccc-
Confidence 77777776653 222 1233455555555443 333 2456677777777777655321 2244455555554442
Q ss_pred cchHHHHhhhcCceEecCCCcCcccCccccCCC-CCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceee
Q 006657 355 IPAWIGEKLLRNLILRLRSNKFDGQIPAELCRL-TSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIE 433 (636)
Q Consensus 355 ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 433 (636)
.+.. ...+...++..+.+.+. ..+ ......++..+.+.+. +
T Consensus 239 ~~~~----~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~-~---------------------------- 280 (353)
T d1jl5a_ 239 LPEL----PQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL-C---------------------------- 280 (353)
T ss_dssp CCCC----CTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE-C----------------------------
T ss_pred cccc----ccccccccccccccccc-----ccccchhcccccccCccccc-c----------------------------
Confidence 1111 23344444444444321 111 2334455555544411 1
Q ss_pred ceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCC
Q 006657 434 LSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLS 513 (636)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 513 (636)
..+++|++|+|++|+++ .+|.. +++|+.|+|++|+++ .+|.. +++|++|++++|+++
T Consensus 281 ---------------~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 281 ---------------DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR 337 (353)
T ss_dssp ---------------CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred ---------------ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence 12345899999999998 67754 578999999999998 67753 467999999999988
Q ss_pred ccCchhccCCCCCCeeec
Q 006657 514 GRIPQSISSLTFLSHLNL 531 (636)
Q Consensus 514 ~~~p~~l~~l~~L~~L~l 531 (636)
.+|+.. .+|+.|.+
T Consensus 338 -~lp~~~---~~L~~L~~ 351 (353)
T d1jl5a_ 338 -EFPDIP---ESVEDLRM 351 (353)
T ss_dssp -SCCCCC---TTCCEEEC
T ss_pred -CCCccc---cccCeeEC
Confidence 677643 35666654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=3.6e-18 Score=174.34 Aligned_cols=304 Identities=24% Similarity=0.243 Sum_probs=196.4
Q ss_pred CCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhC
Q 006657 141 GSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 220 (636)
Q Consensus 141 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 220 (636)
.++++||++++.++ .+|+. .++|++|++++|+++.+|. ...+|++|++++|.++..+.++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp~------------~~~~L~~L~l~~n~l~~l~~lp---- 97 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPE------------LPQSLKSLLVDNNNLKALSDLP---- 97 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCCC------------CCTTCCEEECCSSCCSCCCSCC----
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCccccc------------chhhhhhhhhhhcccchhhhhc----
Confidence 47899999999998 67864 4689999999998876531 2468999999999888775432
Q ss_pred CCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCC
Q 006657 221 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLE 300 (636)
Q Consensus 221 ~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 300 (636)
+.|++|++++|.+. .+| .++.+++|+.|+++++.+.. .+ .....+..+.+..+... .+..+..++.++
T Consensus 98 --~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~~~~~~-~~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~ 165 (353)
T d1jl5a_ 98 --PLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKK-LP----DLPPSLEFIAAGNNQLE--ELPELQNLPFLT 165 (353)
T ss_dssp --TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS--SCCCCTTCTTCC
T ss_pred --cccccccccccccc-ccc--chhhhccceeeccccccccc-cc----cccccccchhhcccccc--ccccccccccce
Confidence 46889999998887 566 35778889999998888763 22 23456777777766554 344567778888
Q ss_pred EEEccCCcCCcccchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccC
Q 006657 301 HLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQI 380 (636)
Q Consensus 301 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~ 380 (636)
.+++++|..... +. .....+.+...++.+. .+|... .++.++.+++++|.... +
T Consensus 166 ~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-------------------~~~~~~--~l~~L~~l~l~~n~~~~-~ 219 (353)
T d1jl5a_ 166 AIYADNNSLKKL-PD---LPLSLESIVAGNNILE-------------------ELPELQ--NLPFLTTIYADNNLLKT-L 219 (353)
T ss_dssp EEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-------------------SCCCCT--TCTTCCEEECCSSCCSS-C
T ss_pred eccccccccccc-cc---cccccccccccccccc-------------------cccccc--ccccccccccccccccc-c
Confidence 888888876632 21 1233455555554443 222211 25666677777666542 2
Q ss_pred ccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECc
Q 006657 381 PAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLS 460 (636)
Q Consensus 381 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 460 (636)
|. ...++..+++.++++.. .+.....+......... ..............++.
T Consensus 220 ~~---~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~-----------------------~~~l~~l~~~~~~~~~~ 272 (353)
T d1jl5a_ 220 PD---LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENI-----------------------FSGLSELPPNLYYLNAS 272 (353)
T ss_dssp CS---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSC-----------------------CSEESCCCTTCCEEECC
T ss_pred cc---ccccccccccccccccc-ccccccccccccccccc-----------------------ccccccccchhcccccc
Confidence 22 23456666666666552 22222211111000000 00000011224567777
Q ss_pred CCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccC
Q 006657 461 GNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKI 540 (636)
Q Consensus 461 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 540 (636)
.+.+.+. ...+++|++|+|++|+++ .+|.. +++|++|+|++|+++ .+|.. +.+|++|++++|+++ .+
T Consensus 273 ~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~l 339 (353)
T d1jl5a_ 273 SNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EF 339 (353)
T ss_dssp SSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SC
T ss_pred cCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CC
Confidence 7776632 234689999999999998 67754 578999999999998 67753 467999999999987 57
Q ss_pred CC
Q 006657 541 PL 542 (636)
Q Consensus 541 p~ 542 (636)
|.
T Consensus 340 p~ 341 (353)
T d1jl5a_ 340 PD 341 (353)
T ss_dssp CC
T ss_pred Cc
Confidence 75
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4.8e-21 Score=203.24 Aligned_cols=382 Identities=20% Similarity=0.161 Sum_probs=234.7
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCC----CCCccCcCCCCCCeEeccCCCCCCccccccccccccc
Q 006657 117 HLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTG----MIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSW 192 (636)
Q Consensus 117 ~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~ 192 (636)
+|++||+++|++++..+...+..++++++|+|++|.++. .++..+..+++|++|||++|.+.......+ ...
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l----~~~ 78 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV----LQG 78 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH----HHT
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHH----HHH
Confidence 578899999998876556667778899999999998873 244556788899999999887643211110 011
Q ss_pred cc-CCCCCcEEEccCCCCCCCC--ChhhhhCCCCCCCEEEeecCCCCCCCC----CccccCCCCCcEEEcccCCCCCCCC
Q 006657 193 LS-GLSLLKHLDLTGVDLSTAS--DWFLVTNMLPSLQVLKLSACSLHNSLP----ELPIANFSSLYTLDLSYNEFDNTLV 265 (636)
Q Consensus 193 l~-~l~~L~~L~Ls~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (636)
+. ...+|++|++++|.+++.. .++..+..+++|++|++++|.++..-. ...................+.....
T Consensus 79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 158 (460)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence 22 3457999999999887652 233456778899999999888753100 0001111223334443333321100
Q ss_pred ---hhhhcCCCCCcEEEccCCcCccc----CCccc-cCCCCCCEEEccCCcCCcc----cchhhhCCCCCCEEEccCccc
Q 006657 266 ---PSWLFGLSHLVFLDLGFNSFGGP----IPDGL-QNLTSLEHLDLRSNNFISS----IPTWLHKFTRLEYLSLRENRL 333 (636)
Q Consensus 266 ---~~~l~~l~~L~~L~L~~n~l~~~----~p~~l-~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l 333 (636)
...+.....++.++++.+..... ....+ ........+++..+.+... ....+...+.++.+++++|.+
T Consensus 159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~ 238 (460)
T d1z7xw1 159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 238 (460)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence 02234456677777777655421 00111 1234566777777665422 112344567788888887765
Q ss_pred ccc-----------cCccceEEEccCCCCccccc----hHHHHhhhcCceEecCCCcCcccCcccc-----CCCCCCCEE
Q 006657 334 QGM-----------ISSVLVVFDIGENGFSGNIP----AWIGEKLLRNLILRLRSNKFDGQIPAEL-----CRLTSLHIL 393 (636)
Q Consensus 334 ~~~-----------~p~~L~~L~l~~n~l~g~ip----~~~~~~~~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L 393 (636)
... ....++.+++++|.+..... ..+. ..+.++.+++++|.++......+ .....|+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~-~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l 317 (460)
T d1z7xw1 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 317 (460)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cccccchhhccccccccccccccccccccccccccccccccc-ccccccccccccccccccccchhhccccccccccccc
Confidence 432 12367777888777764322 2222 25678888888888764322221 234578889
Q ss_pred EccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCcc----CC
Q 006657 394 DLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGD----IP 469 (636)
Q Consensus 394 ~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~----~p 469 (636)
++++|.++......+.++.. ..+.|++|||++|++++. ++
T Consensus 318 ~l~~~~l~~~~~~~l~~~~~------------------------------------~~~~L~~L~Ls~N~i~~~g~~~l~ 361 (460)
T d1z7xw1 318 WVKSCSFTAACCSHFSSVLA------------------------------------QNRFLLELQISNNRLEDAGVRELC 361 (460)
T ss_dssp ECTTSCCBGGGHHHHHHHHH------------------------------------HCSSCCEEECCSSBCHHHHHHHHH
T ss_pred cccccchhhhhhhhcccccc------------------------------------cccchhhhheeeecccCcccchhh
Confidence 99888877554444433221 234488999999998753 33
Q ss_pred cccc-cccCCCeEeCCCccCcCC----CCccccCCCCCCEEeCCCCCCCccCchhc----c-CCCCCCeeeccCCcCccc
Q 006657 470 EEMT-NLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDFSGNLLSGRIPQSI----S-SLTFLSHLNLSDNNLTGK 539 (636)
Q Consensus 470 ~~~~-~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~ls~N~l~g~ 539 (636)
..+. ..+.|++|+|++|++++. +++.+...++|++|||++|+++......+ . ....|++|++.+|++...
T Consensus 362 ~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~ 441 (460)
T d1z7xw1 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441 (460)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred hhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence 3333 456799999999999753 44556677899999999999876433333 2 334799999999988754
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=6.9e-18 Score=161.34 Aligned_cols=199 Identities=25% Similarity=0.334 Sum_probs=162.9
Q ss_pred CCcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCc
Q 006657 101 TSKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPI 180 (636)
Q Consensus 101 ~~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~ 180 (636)
.+.+.+.+ .+..+.+|++|++++|.++. ++ .+..+++|++|++++|++++..| +..+++|+++++++|.++..
T Consensus 28 ~~~~~d~~--~~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i 100 (227)
T d1h6ua2 28 KSNVTDTV--TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV 100 (227)
T ss_dssp CSSTTSEE--CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC
T ss_pred CCCcCCcC--CHHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc
Confidence 34555543 45678899999999999983 54 58899999999999999986543 89999999999999877543
Q ss_pred ccccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCC
Q 006657 181 SFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 260 (636)
Q Consensus 181 ~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l 260 (636)
+.+.++++|+.++++++...+.. .+...+.++.+.++++.+... ..+.++++|+.|++++|.+
T Consensus 101 ----------~~l~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~ 163 (227)
T d1h6ua2 101 ----------SAIAGLQSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQV 163 (227)
T ss_dssp ----------GGGTTCTTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCC
T ss_pred ----------ccccccccccccccccccccccc----hhccccchhhhhchhhhhchh---hhhcccccccccccccccc
Confidence 23788999999999999887764 356688999999999988753 2477889999999999998
Q ss_pred CCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccC
Q 006657 261 DNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330 (636)
Q Consensus 261 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 330 (636)
.+. ..++++++|++|++++|++++ ++ .++++++|++|++++|++++. + .+.++++|++|++++
T Consensus 164 ~~~---~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 164 SDL---TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCC---GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred ccc---hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence 642 348899999999999999985 43 488999999999999999854 3 388999999999874
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=1e-17 Score=160.13 Aligned_cols=204 Identities=22% Similarity=0.325 Sum_probs=123.0
Q ss_pred EEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCc
Q 006657 252 TLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLREN 331 (636)
Q Consensus 252 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 331 (636)
.++++.+.+++.+ .+..+.+|++|++.+|.++. ++ .+..+++|++|++++|++++..| +..+++|+++++++|
T Consensus 23 ~~~l~~~~~~d~~---~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 23 KIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (227)
T ss_dssp HHHTTCSSTTSEE---CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHhCCCCcCCcC---CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence 3444555554332 23334556666666666553 32 35566666666666666654332 556666666666665
Q ss_pred ccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhh
Q 006657 332 RLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNL 411 (636)
Q Consensus 332 ~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 411 (636)
.++ .++. +. .+++|+.+.++++...+. ..+...+.+..+.++++.+....+ +.+
T Consensus 96 ~~~-------------------~i~~-l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~- 149 (227)
T d1h6ua2 96 PLK-------------------NVSA-IA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAG- 149 (227)
T ss_dssp CCS-------------------CCGG-GT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGG-
T ss_pred ccc-------------------cccc-cc-cccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hcc-
Confidence 544 2221 11 255566666666555432 234556677777777776653222 222
Q ss_pred hhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCC
Q 006657 412 TAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGK 491 (636)
Q Consensus 412 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ 491 (636)
.+.|+.|++++|.+++. ..++++++|++|+|++|++++
T Consensus 150 ---------------------------------------~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~- 187 (227)
T d1h6ua2 150 ---------------------------------------LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD- 187 (227)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-
T ss_pred ---------------------------------------ccccccccccccccccc--hhhcccccceecccCCCccCC-
Confidence 23377788888877643 237788888888888888875
Q ss_pred CCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccC
Q 006657 492 IPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSD 533 (636)
Q Consensus 492 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 533 (636)
++. ++++++|++|++++|++++ +|. +.++++|++|++++
T Consensus 188 l~~-l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 188 ISP-LASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp CGG-GGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred Chh-hcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence 443 7888888888888888885 442 77888888888863
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1e-16 Score=150.92 Aligned_cols=165 Identities=23% Similarity=0.241 Sum_probs=100.8
Q ss_pred CCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCCCcEEEccCCCCCCCCChhhhh
Q 006657 140 MGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVT 219 (636)
Q Consensus 140 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 219 (636)
+.+|++|++++|.+++. + .+..+++|++|++++|+++..+ .++++++|++|++++|++++.+ .+
T Consensus 45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~----------~~~~l~~L~~L~l~~n~i~~l~----~l 108 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK----------PLANLKNLGWLFLDENKVKDLS----SL 108 (210)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCCCCGG----GG
T ss_pred hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc----------ccccCccccccccccccccccc----cc
Confidence 34555555555555422 1 2445555555555555544321 1345555666666655555443 34
Q ss_pred CCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCC
Q 006657 220 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSL 299 (636)
Q Consensus 220 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 299 (636)
..+++|+.|++++|.+. .++ .+.++++++.+++++|.+++ + ..+..+++|+++++++|++++. + .+.++++|
T Consensus 109 ~~l~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~--~-~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L 180 (210)
T d1h6ta2 109 KDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKL 180 (210)
T ss_dssp TTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTC
T ss_pred ccccccccccccccccc-ccc--cccccccccccccccccccc--c-cccccccccccccccccccccc-c-cccCCCCC
Confidence 55666677777666664 222 46667777777777777753 2 3456677788888888877743 3 37778888
Q ss_pred CEEEccCCcCCcccchhhhCCCCCCEEEccC
Q 006657 300 EHLDLRSNNFISSIPTWLHKFTRLEYLSLRE 330 (636)
Q Consensus 300 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 330 (636)
++|++++|+++. +| .+.++++|++|++++
T Consensus 181 ~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred CEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 888888888763 44 477788888887763
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.3e-16 Score=150.33 Aligned_cols=176 Identities=26% Similarity=0.326 Sum_probs=145.3
Q ss_pred CcceeecCccccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcc
Q 006657 102 SKLIGKINPSLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPIS 181 (636)
Q Consensus 102 ~~l~g~i~~~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~ 181 (636)
+.+.+.++. .++..|++|++++|.++. ++ .+..+++|++|++++|.+++ ++ .++++++|++|++++|+++..+
T Consensus 34 ~~~~~~~~~--~~L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l~ 106 (210)
T d1h6ta2 34 KSVTDAVTQ--NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDLS 106 (210)
T ss_dssp SCTTSEECH--HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCGG
T ss_pred CccCCccCH--HHhcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccccc
Confidence 345555543 357789999999999984 33 47889999999999999986 44 4789999999999999886542
Q ss_pred cccccccccccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCC
Q 006657 182 FSFLYLENFSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 261 (636)
Q Consensus 182 ~~~~~~~~l~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 261 (636)
.+.++++|+.|++++|.+...+ .+..+++++.+++++|.+++. ..+..+++|+++++++|+++
T Consensus 107 ----------~l~~l~~L~~L~l~~~~~~~~~----~l~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~~n~l~ 169 (210)
T d1h6ta2 107 ----------SLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS 169 (210)
T ss_dssp ----------GGTTCTTCCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCC
T ss_pred ----------cccccccccccccccccccccc----ccccccccccccccccccccc---cccccccccccccccccccc
Confidence 2788999999999999987764 467789999999999999742 34778999999999999997
Q ss_pred CCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccC
Q 006657 262 NTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRS 306 (636)
Q Consensus 262 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 306 (636)
+ ++ .+.++++|++|++++|+++. +| .+.++++|++|+|++
T Consensus 170 ~-i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 170 D-IV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp C-CG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred c-cc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 4 43 38899999999999999984 55 589999999999974
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=2.6e-17 Score=152.83 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=66.3
Q ss_pred ccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccC
Q 006657 454 VRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSD 533 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 533 (636)
|+.|+|++|++++..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..|+.|..+++|+++++++
T Consensus 56 L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred EeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence 56666777766666666666677777777777777665566666677777777777777766666666677777777777
Q ss_pred CcCcccCCCCCccCCccccccCCC
Q 006657 534 NNLTGKIPLGTQLQGFNASCFAGN 557 (636)
Q Consensus 534 N~l~g~ip~~~~~~~~~~~~~~~n 557 (636)
|++.+.++..+...++......++
T Consensus 136 N~~~~~~~~~~~~~~l~~~~l~~~ 159 (192)
T d1w8aa_ 136 NPFNCNCHLAWFAEWLRKKSLNGG 159 (192)
T ss_dssp CCBCCSGGGHHHHHHHHHHCCSGG
T ss_pred cccccccchHHHhhhhhhhcccCC
Confidence 776665554433333333333333
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.4e-16 Score=153.72 Aligned_cols=85 Identities=18% Similarity=0.315 Sum_probs=45.0
Q ss_pred CCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCC-ccccCCCCCCEEEccC-CcCCcccchhhhCCCCCCEE
Q 006657 249 SLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIP-DGLQNLTSLEHLDLRS-NNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 249 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 326 (636)
++++|++++|.++ .+++..|.++++|++|++++|.+...++ ..|.++++++++++.. |.+....+..|.++++|+++
T Consensus 30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l 108 (242)
T d1xwdc1 30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 108 (242)
T ss_dssp CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence 4555555555554 4443455555556666665555543332 2345555566555542 44444444555555666666
Q ss_pred EccCcccc
Q 006657 327 SLRENRLQ 334 (636)
Q Consensus 327 ~L~~n~l~ 334 (636)
++++|.+.
T Consensus 109 ~l~~~~l~ 116 (242)
T d1xwdc1 109 LISNTGIK 116 (242)
T ss_dssp EEESCCCC
T ss_pred ccchhhhc
Confidence 66555544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=6e-16 Score=144.34 Aligned_cols=162 Identities=30% Similarity=0.389 Sum_probs=91.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccc
Q 006657 114 DLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWL 193 (636)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l 193 (636)
.++++++|++++|.++. ++ .+..+++|++|++++|++++..| ++++++|++|++++|.+
T Consensus 38 ~l~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~---------------- 96 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI---------------- 96 (199)
T ss_dssp HHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC----------------
T ss_pred HhcCCCEEECCCCCCCC--cc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccc----------------
Confidence 45566666666666552 22 34555666666666665553221 55555555555555544
Q ss_pred cCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC
Q 006657 194 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS 273 (636)
Q Consensus 194 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 273 (636)
...+ .+..+++|+.|++++|..... ..+..+++|+.|++++|++. .+ ..+..++
T Consensus 97 ----------------~~~~----~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~l~-~~--~~l~~~~ 150 (199)
T d2omxa2 97 ----------------ADIT----PLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTIS-DI--SALSGLT 150 (199)
T ss_dssp ----------------CCCG----GGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCC-CC--GGGTTCT
T ss_pred ----------------cccc----ccccccccccccccccccccc---cccchhhhhHHhhhhhhhhc-cc--ccccccc
Confidence 3332 234455555555555555421 23555666666666666664 22 3456667
Q ss_pred CCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEE
Q 006657 274 HLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYL 326 (636)
Q Consensus 274 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 326 (636)
+|++|++.+|++++. + .++++++|++|++++|++++ ++ .++++++|++|
T Consensus 151 ~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 151 SLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp TCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred cccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 777777777776643 2 36677777777777777664 33 46667777665
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.5e-18 Score=183.74 Aligned_cols=324 Identities=18% Similarity=0.164 Sum_probs=208.1
Q ss_pred CCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCC----CCCCccccCCCCCcEEEcccCCCCCCCC---hhhh
Q 006657 197 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN----SLPELPIANFSSLYTLDLSYNEFDNTLV---PSWL 269 (636)
Q Consensus 197 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l 269 (636)
.+|++||++++++++. .|...+..++++++|+|++|+++. .++ ..+..+++|+.|||++|.++.... ...+
T Consensus 2 ~~l~~ld~~~~~i~~~-~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l 79 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 79 (460)
T ss_dssp EEEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CCCCEEEeeCCcCChH-HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence 3689999999999985 344455668999999999999873 122 345788999999999998853211 0122
Q ss_pred c-CCCCCcEEEccCCcCccc----CCccccCCCCCCEEEccCCcCCcccchhh---------------------------
Q 006657 270 F-GLSHLVFLDLGFNSFGGP----IPDGLQNLTSLEHLDLRSNNFISSIPTWL--------------------------- 317 (636)
Q Consensus 270 ~-~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--------------------------- 317 (636)
. ...+|++|++++|++++. ++..+..+++|++|++++|.+.......+
T Consensus 80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
T d1z7xw1 80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159 (460)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence 2 235799999999998754 45567889999999999998753221111
Q ss_pred ------hCCCCCCEEEccCcccccc-----------cCccceEEEccCCCCccccchH---HHHhhhcCceEecCCCcCc
Q 006657 318 ------HKFTRLEYLSLRENRLQGM-----------ISSVLVVFDIGENGFSGNIPAW---IGEKLLRNLILRLRSNKFD 377 (636)
Q Consensus 318 ------~~l~~L~~L~L~~n~l~~~-----------~p~~L~~L~l~~n~l~g~ip~~---~~~~~~~L~~L~L~~n~l~ 377 (636)
.....++.++++++..... .+.....+++..+.+...-... .......++.+.+.+|.+.
T Consensus 160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~ 239 (460)
T d1z7xw1 160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239 (460)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence 1224566677666654421 1224556777776654321111 1113567888888888764
Q ss_pred c-----cCccccCCCCCCCEEEccCccCccccch----hhhhhhhhccccCCCccccccccceeeceEEEEeeccccc--
Q 006657 378 G-----QIPAELCRLTSLHILDLSHNNFSGTLPR----CINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELA-- 446 (636)
Q Consensus 378 ~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 446 (636)
. ..+........++.+++++|.+...... .+...+.+..+..... .+......
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n----------------~i~~~~~~~l 303 (460)
T d1z7xw1 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN----------------ELGDEGARLL 303 (460)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC----------------CCHHHHHHHH
T ss_pred ccccchhhcccccccccccccccccccccccccccccccccccccccccccccc----------------cccccccchh
Confidence 2 2233445567899999999887643222 1222222221111000 00000000
Q ss_pred ---cccccccccEEECcCCccCccCCcc----cccccCCCeEeCCCccCcCC----CCcccc-CCCCCCEEeCCCCCCCc
Q 006657 447 ---YNTMLKLVRCMDLSGNNLSGDIPEE----MTNLLALQSLNLSHNFLAGK----IPENVG-AMRSLESIDFSGNLLSG 514 (636)
Q Consensus 447 ---~~~~~~~L~~L~Ls~N~l~g~~p~~----~~~l~~L~~L~Ls~N~l~~~----ip~~~~-~l~~L~~L~Ls~N~l~~ 514 (636)
.......|+.+++++|.++...... +...++|++|+|++|++++. +++.+. ..+.|++|+|++|+++.
T Consensus 304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 383 (460)
T d1z7xw1 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 383 (460)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence 0112346899999999998654333 34567899999999999753 333443 45789999999999985
Q ss_pred c----CchhccCCCCCCeeeccCCcCcc
Q 006657 515 R----IPQSISSLTFLSHLNLSDNNLTG 538 (636)
Q Consensus 515 ~----~p~~l~~l~~L~~L~ls~N~l~g 538 (636)
. +++.+..+++|++||+++|+++.
T Consensus 384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~ 411 (460)
T d1z7xw1 384 SSCSSLAATLLANHSLRELDLSNNCLGD 411 (460)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence 3 45667778999999999999874
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=8.1e-16 Score=143.44 Aligned_cols=130 Identities=25% Similarity=0.374 Sum_probs=106.5
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+..+++|++|++++|.+++.+ .+..+++|++|++++|.+. .++ .+.++++|+.|++++|.+.. + ..+..+
T Consensus 58 l~~l~nL~~L~Ls~N~l~~~~----~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~~~~~~-~--~~~~~l 127 (199)
T d2omxa2 58 VEYLNNLTQINFSNNQLTDIT----PLKNLTKLVDILMNNNQIA-DIT--PLANLTNLTGLTLFNNQITD-I--DPLKNL 127 (199)
T ss_dssp GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCC-C--GGGTTC
T ss_pred cccCCCcCcCccccccccCcc----cccCCcccccccccccccc-ccc--cccccccccccccccccccc-c--cccchh
Confidence 455667777777777766654 3678999999999999887 344 48899999999999998864 2 457889
Q ss_pred CCCcEEEccCCcCcccCCccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCcccccc
Q 006657 273 SHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRLQGM 336 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 336 (636)
++|++|++++|++.. + +.+..+++|++|++++|++++. + .++++++|++|++++|++++.
T Consensus 128 ~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i 187 (199)
T d2omxa2 128 TNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI 187 (199)
T ss_dssp TTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC
T ss_pred hhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC
Confidence 999999999999974 3 3588999999999999999864 3 488999999999999998863
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.67 E-value=8.6e-17 Score=149.23 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=127.3
Q ss_pred EEEccCCCCccccchHHHHhhhcCceEecCCCcCcccC-ccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCC
Q 006657 343 VFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQI-PAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSM 421 (636)
Q Consensus 343 ~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~ 421 (636)
.++.+++.++ ++|..+ .+++++|+|++|++++.+ +..|..+++|+.|++++|++.+..+..+..++.
T Consensus 12 ~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~-------- 79 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-------- 79 (192)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT--------
T ss_pred EEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc--------
Confidence 3445555555 677654 357889999999998644 556788999999999999999777777766554
Q ss_pred ccccccccceeeceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCC
Q 006657 422 ETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRS 501 (636)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~ 501 (636)
|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++
T Consensus 80 --------------------------------L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~ 127 (192)
T d1w8aa_ 80 --------------------------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp --------------------------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred --------------------------------cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcc
Confidence 788999999999888888999999999999999999888888999999
Q ss_pred CCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccCCCCCccCCccccccCCC
Q 006657 502 LESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKIPLGTQLQGFNASCFAGN 557 (636)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n 557 (636)
|++|+|++|.+....+... -...++.+.+..|.+.|..|.. ++...-..+..|
T Consensus 128 L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~--l~~~~l~~L~~n 180 (192)
T d1w8aa_ 128 LTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHS 180 (192)
T ss_dssp CCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTT
T ss_pred cccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChh--hcCCEeeecCHh
Confidence 9999999999885433211 1234667778888888877753 333333344444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-16 Score=152.02 Aligned_cols=201 Identities=17% Similarity=0.136 Sum_probs=104.0
Q ss_pred CEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCC
Q 006657 119 VYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSL 198 (636)
Q Consensus 119 ~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~ 198 (636)
++++.++..++ .+|..+. +++++|++++|+++...+..|.++++|++|++++|.+.....+ ..+.++++
T Consensus 11 ~~i~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~-------~~f~~l~~ 79 (242)
T d1xwdc1 11 RVFLCQESKVT--EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-------DVFSNLPK 79 (242)
T ss_dssp SEEEEESCSCS--SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECS-------SSEESCTT
T ss_pred CEEEEeCCCCC--CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeec-------cccccccc
Confidence 56777777777 4666542 5788888888888744445677888888888888766442111 12556666
Q ss_pred CcEEEccC-CCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCCC-CCc
Q 006657 199 LKHLDLTG-VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGLS-HLV 276 (636)
Q Consensus 199 L~~L~Ls~-n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~-~L~ 276 (636)
++++++.. +.+...+. ..+..+++|+++++++|++....+...+..++.++.+..+++.+. .+++..+.+++ .++
T Consensus 80 l~~l~~~~~n~l~~~~~--~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~~~~~~l~ 156 (242)
T d1xwdc1 80 LHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESV 156 (242)
T ss_dssp CCEEEEECCTTCCEECT--TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCE
T ss_pred ccccccccccccccccc--ccccccccccccccchhhhcccccccccccccccccccccccccc-cccccccccccccce
Confidence 67666553 33433321 134556666666666666553222112223334444444444443 33333343332 455
Q ss_pred EEEccCCcCcccCCccccCCCCCCEE-EccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 277 FLDLGFNSFGGPIPDGLQNLTSLEHL-DLRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 277 ~L~L~~n~l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
.|++++|+++. ++......++++++ ++++|+++...+..|.++++|++|++++|+++
T Consensus 157 ~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~ 214 (242)
T d1xwdc1 157 ILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 214 (242)
T ss_dssp EEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred eeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence 55555555553 22222233333333 33444444332334455555555555555544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=7.3e-16 Score=152.16 Aligned_cols=212 Identities=21% Similarity=0.218 Sum_probs=120.8
Q ss_pred CCCCCcEEEcccCCCCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEEccCC-cCCcc-cchhhhCCCCC
Q 006657 246 NFSSLYTLDLSYNEFDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLDLRSN-NFISS-IPTWLHKFTRL 323 (636)
Q Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L 323 (636)
...+|++||++++.+++......+..+++|++|+++++.+++..+..++.+++|++|++++| .++.. +......+++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 44567777777776654333344566677777777777766655666666677777777664 34321 12223456666
Q ss_pred CEEEccCcc-cccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCcc--C
Q 006657 324 EYLSLRENR-LQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNN--F 400 (636)
Q Consensus 324 ~~L~L~~n~-l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~--l 400 (636)
++|++++|. +++. .+...+. ...++|+.|+++++. +
T Consensus 124 ~~L~ls~c~~~~~~-----------------~~~~~~~------------------------~~~~~L~~L~l~~~~~~i 162 (284)
T d2astb2 124 DELNLSWCFDFTEK-----------------HVQVAVA------------------------HVSETITQLNLSGYRKNL 162 (284)
T ss_dssp CEEECCCCTTCCHH-----------------HHHHHHH------------------------HSCTTCCEEECCSCGGGS
T ss_pred cccccccccccccc-----------------cchhhhc------------------------ccccccchhhhccccccc
Confidence 666666642 2210 0111111 123456666666532 2
Q ss_pred ccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcCC-ccCccCCcccccccCCC
Q 006657 401 SGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSGN-NLSGDIPEEMTNLLALQ 479 (636)
Q Consensus 401 ~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~ 479 (636)
+... +..+ ...+++|++|++++| .+++..+..+.++++|+
T Consensus 163 ~~~~---l~~l------------------------------------~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~ 203 (284)
T d2astb2 163 QKSD---LSTL------------------------------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203 (284)
T ss_dssp CHHH---HHHH------------------------------------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cccc---cccc------------------------------------ccccccccccccccccCCCchhhhhhcccCcCC
Confidence 2111 1100 112344777888775 46767777778888888
Q ss_pred eEeCCCc-cCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeeccCCcCcccC
Q 006657 480 SLNLSHN-FLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNLSDNNLTGKI 540 (636)
Q Consensus 480 ~L~Ls~N-~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 540 (636)
+|++++| .+++.....++++++|+.|+++++--.+.++.....+ ..|.+..++++...
T Consensus 204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~l---p~L~i~~~~ls~~~ 262 (284)
T d2astb2 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEAL---PHLQINCSHFTTIA 262 (284)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHS---TTSEESCCCSCCTT
T ss_pred EEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhC---ccccccCccCCCCC
Confidence 8888884 6776666677888888888888872222222222333 44456677777543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.1e-16 Score=152.27 Aligned_cols=185 Identities=23% Similarity=0.223 Sum_probs=106.9
Q ss_pred cCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCC-CCCcccccccccccc
Q 006657 113 LDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDT-HNPISFSFLYLENFS 191 (636)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~~l~ 191 (636)
.....|++||++++.++...++..+..+++|++|+++++.+++..+..++++++|++|+++++. ++..... .
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~-------~ 115 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-------T 115 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-------H
T ss_pred ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccc-------h
Confidence 3456788888888877654456667788888888888888777777777788888888888742 3221110 0
Q ss_pred cccCCCCCcEEEccCCC-CCCCCChhhhh-CCCCCCCEEEeecCC--CCCC-CCCccccCCCCCcEEEcccCC-CCCCCC
Q 006657 192 WLSGLSLLKHLDLTGVD-LSTASDWFLVT-NMLPSLQVLKLSACS--LHNS-LPELPIANFSSLYTLDLSYNE-FDNTLV 265 (636)
Q Consensus 192 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~-~~l~~L~~L~L~~n~--l~~~-~p~~~~~~l~~L~~L~Ls~n~-l~~~~~ 265 (636)
-..++++|++|+++++. +++. .+...+ ...++|+.|+++++. ++.. +. ....++++|++|++++|. +++...
T Consensus 116 l~~~~~~L~~L~ls~c~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~-~l~~~~~~L~~L~L~~~~~itd~~~ 193 (284)
T d2astb2 116 LLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCF 193 (284)
T ss_dssp HHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred hhHHHHhccccccccccccccc-cchhhhcccccccchhhhccccccccccccc-ccccccccccccccccccCCCchhh
Confidence 12456777777777753 3322 111112 234567777776542 2211 11 112345666666666543 443333
Q ss_pred hhhhcCCCCCcEEEccCC-cCcccCCccccCCCCCCEEEccCC
Q 006657 266 PSWLFGLSHLVFLDLGFN-SFGGPIPDGLQNLTSLEHLDLRSN 307 (636)
Q Consensus 266 ~~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n 307 (636)
..+..+++|++|++++| .+++.....++++++|++|+++++
T Consensus 194 -~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 194 -QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp -GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred -hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 45555666666666663 344444444556666666666655
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.46 E-value=1.5e-14 Score=146.89 Aligned_cols=196 Identities=18% Similarity=0.191 Sum_probs=109.7
Q ss_pred ccCCCCCcEEEccCCCCCCC--CChhhhhCCCCCCCEEEeecCCCCCCCCC------------ccccCCCCCcEEEcccC
Q 006657 193 LSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSLPE------------LPIANFSSLYTLDLSYN 258 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------------~~~~~l~~L~~L~Ls~n 258 (636)
+..+++|++|+|++|.++.. ..+...+...++|++|++++|.+...-.. ......+.|+.+++++|
T Consensus 89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n 168 (344)
T d2ca6a1 89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 168 (344)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence 44555666666666655443 11222334456666666666655311000 00124456777777777
Q ss_pred CCCCCCC---hhhhcCCCCCcEEEccCCcCccc-----CCccccCCCCCCEEEccCCcCCcc----cchhhhCCCCCCEE
Q 006657 259 EFDNTLV---PSWLFGLSHLVFLDLGFNSFGGP-----IPDGLQNLTSLEHLDLRSNNFISS----IPTWLHKFTRLEYL 326 (636)
Q Consensus 259 ~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L 326 (636)
.++.... ...+...+.|++|++++|+++.. +...+..+++|++|++++|.++.. +...+..+++|++|
T Consensus 169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L 248 (344)
T d2ca6a1 169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248 (344)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence 7653211 12345567788888888877532 233456678888888888877532 33456677788888
Q ss_pred EccCcccccccCccceEEEccCCCCccccchHHHH-hhhcCceEecCCCcCccc----CccccC-CCCCCCEEEccCccC
Q 006657 327 SLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGE-KLLRNLILRLRSNKFDGQ----IPAELC-RLTSLHILDLSHNNF 400 (636)
Q Consensus 327 ~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~-~~~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~Ls~N~l 400 (636)
++++|.+++.-.. .+-..+.. ....|++|++++|+++.. +...+. +.++|++|++++|++
T Consensus 249 ~Ls~n~i~~~g~~--------------~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 249 GLNDCLLSARGAA--------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp ECTTCCCCHHHHH--------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred hhhcCccCchhhH--------------HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence 8888876632100 01111110 124566777777776532 222332 567899999999998
Q ss_pred cc
Q 006657 401 SG 402 (636)
Q Consensus 401 ~~ 402 (636)
..
T Consensus 315 ~~ 316 (344)
T d2ca6a1 315 SE 316 (344)
T ss_dssp CT
T ss_pred CC
Confidence 63
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.45 E-value=3.4e-14 Score=144.30 Aligned_cols=255 Identities=15% Similarity=0.133 Sum_probs=155.4
Q ss_pred cccCCCCCcEEEcccCCCCCCCC---hhhhcCCCCCcEEEccCCcCccc----------CCccccCCCCCCEEEccCCcC
Q 006657 243 PIANFSSLYTLDLSYNEFDNTLV---PSWLFGLSHLVFLDLGFNSFGGP----------IPDGLQNLTSLEHLDLRSNNF 309 (636)
Q Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~----------~p~~l~~l~~L~~L~L~~n~l 309 (636)
.+.+...|+.|+|++|.+..... ...+...++|+.++++++..... +...+...++|++|++++|.+
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 45667889999999988753221 13456678899999987754321 122345678899999999888
Q ss_pred Ccc----cchhhhCCCCCCEEEccCcccccccCccceEEEccCCCCccccchHHHHhhhcCceEecCCCcCccc----Cc
Q 006657 310 ISS----IPTWLHKFTRLEYLSLRENRLQGMISSVLVVFDIGENGFSGNIPAWIGEKLLRNLILRLRSNKFDGQ----IP 381 (636)
Q Consensus 310 ~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~L~~L~l~~n~l~g~ip~~~~~~~~~L~~L~L~~n~l~~~----~p 381 (636)
+.. +...+...++|++|++++|.+.......+. . .+............+.++.+.+++|.++.. +.
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-----~-~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-----R-ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH-----H-HHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred ccccccchhhhhcccccchheeccccccccccccccc-----c-cccccccccccccCcccceeeccccccccccccccc
Confidence 754 334455678888888888876521100000 0 000000000111245677777777776532 23
Q ss_pred cccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceeeceEEEEeeccccccccccccccEEECcC
Q 006657 382 AELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIELSILVVMKGRELAYNTMLKLVRCMDLSG 461 (636)
Q Consensus 382 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 461 (636)
..+...+.|+.|++++|+++...... .+. ......+.|+.|+|++
T Consensus 180 ~~l~~~~~L~~L~L~~n~i~~~g~~~--~l~---------------------------------~~l~~~~~L~~L~Ls~ 224 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQNGIRPEGIEH--LLL---------------------------------EGLAYCQELKVLDLQD 224 (344)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHH--HHH---------------------------------TTGGGCTTCCEEECCS
T ss_pred chhhhhhhhccccccccccccccccc--chh---------------------------------hhhcchhhhccccccc
Confidence 33456677888888888776321100 000 0112345588888888
Q ss_pred CccCcc----CCcccccccCCCeEeCCCccCcCCCCcc----cc--CCCCCCEEeCCCCCCCcc----Cchhcc-CCCCC
Q 006657 462 NNLSGD----IPEEMTNLLALQSLNLSHNFLAGKIPEN----VG--AMRSLESIDFSGNLLSGR----IPQSIS-SLTFL 526 (636)
Q Consensus 462 N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~----~~--~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L 526 (636)
|.++.. +...+..+++|++|+|++|.+++.-... +. ..+.|++||+++|+++.. +...+. +++.|
T Consensus 225 N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L 304 (344)
T d2ca6a1 225 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304 (344)
T ss_dssp SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCC
Confidence 887643 3455677888999999999887542222 22 236799999999988753 233332 56789
Q ss_pred CeeeccCCcCcc
Q 006657 527 SHLNLSDNNLTG 538 (636)
Q Consensus 527 ~~L~ls~N~l~g 538 (636)
++|++++|++..
T Consensus 305 ~~L~l~~N~~~~ 316 (344)
T d2ca6a1 305 LFLELNGNRFSE 316 (344)
T ss_dssp CEEECTTSBSCT
T ss_pred CEEECCCCcCCC
Confidence 999999998864
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=2.7e-13 Score=115.18 Aligned_cols=84 Identities=31% Similarity=0.392 Sum_probs=74.1
Q ss_pred cccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccC-chhccCCCCCCeeec
Q 006657 453 LVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRI-PQSISSLTFLSHLNL 531 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l 531 (636)
.|++||+++|+++ .+|+.++.+++|++|++++|++++ +| .++.+++|++|++++|+++... ...+..+++|+++++
T Consensus 21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l 97 (124)
T d1dcea3 21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 97 (124)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence 3899999999998 688889999999999999999994 55 4899999999999999998543 256889999999999
Q ss_pred cCCcCccc
Q 006657 532 SDNNLTGK 539 (636)
Q Consensus 532 s~N~l~g~ 539 (636)
++|++++.
T Consensus 98 ~~N~i~~~ 105 (124)
T d1dcea3 98 QGNSLCQE 105 (124)
T ss_dssp TTSGGGGS
T ss_pred CCCcCCcC
Confidence 99999753
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=1.9e-13 Score=116.24 Aligned_cols=103 Identities=24% Similarity=0.272 Sum_probs=64.9
Q ss_pred CEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCcccccccccccccccCCCC
Q 006657 119 VYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENFSWLSGLSL 198 (636)
Q Consensus 119 ~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l~~l~~l~~ 198 (636)
|+|+|++|+++ .++ .++.+++|++|++++|+++ .+|+.++.+++|++|++++|.+...+ .+.++++
T Consensus 1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~----------~~~~l~~ 66 (124)
T d1dcea3 1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD----------GVANLPR 66 (124)
T ss_dssp SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG----------GGTTCSS
T ss_pred CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC----------ccccccc
Confidence 56777777777 344 3677777777777777776 56667777777777777777765431 1556666
Q ss_pred CcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCC
Q 006657 199 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236 (636)
Q Consensus 199 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 236 (636)
|++|++++|.++..+.+ ..+..+++|++|++++|.++
T Consensus 67 L~~L~l~~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 67 LQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGG
T ss_pred cCeEECCCCccCCCCCc-hhhcCCCCCCEEECCCCcCC
Confidence 66666666666655431 12344555555555555543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.9e-13 Score=122.11 Aligned_cols=129 Identities=20% Similarity=0.164 Sum_probs=96.8
Q ss_pred ccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCCCCCCCccccCCCCCcEEEcccCCCCCCCChhhhcCC
Q 006657 193 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTLVPSWLFGL 272 (636)
Q Consensus 193 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 272 (636)
+.+..++++|+|++|+++..+. ....+++|+.|++++|.++ .++ .+..+++|++|++++|.++ .+++..+..+
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~~---~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l 86 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 86 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCCC---GGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred ccCcCcCcEEECCCCCCCccCc---cccccccCCEEECCCCCCC-ccC--CcccCcchhhhhccccccc-CCCccccccc
Confidence 4566677777777777777754 2345778888888888887 344 4778888999999999887 5554667788
Q ss_pred CCCcEEEccCCcCcccCC-ccccCCCCCCEEEccCCcCCccc---chhhhCCCCCCEEEc
Q 006657 273 SHLVFLDLGFNSFGGPIP-DGLQNLTSLEHLDLRSNNFISSI---PTWLHKFTRLEYLSL 328 (636)
Q Consensus 273 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L 328 (636)
++|++|++++|+++.... ..+..+++|++|++++|.++... +..+..+++|++||-
T Consensus 87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred cccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 899999999998874321 35788899999999999886432 235778899998874
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.4e-13 Score=123.14 Aligned_cols=113 Identities=20% Similarity=0.111 Sum_probs=77.1
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEEccCCccCCCCCccCcCCCCCCeEeccCCCCCCccccccccccc
Q 006657 111 SLLDLKHLVYLDLSNNNFENNQIPVFLGFMGSLRHIDLSRAELTGMIPHQLGNLFNLQYLDLSIDTHNPISFSFLYLENF 190 (636)
Q Consensus 111 ~l~~l~~L~~L~Ls~n~l~~~~ip~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~l 190 (636)
.+.+...+++|||++|+++ .+|..+..+++|++|++++|+++ .++ .+..+++|++|++++|++...+...
T Consensus 13 ~~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~------ 82 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGL------ 82 (162)
T ss_dssp EEECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCH------
T ss_pred hccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccc------
Confidence 4567778889999999888 46766677888899999988887 343 5778888888888888776543221
Q ss_pred ccccCCCCCcEEEccCCCCCCCCChhhhhCCCCCCCEEEeecCCCC
Q 006657 191 SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 236 (636)
Q Consensus 191 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 236 (636)
+..+++|++|++++|.++..++. ..+..+++|++|++++|.++
T Consensus 83 --~~~l~~L~~L~L~~N~i~~~~~l-~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 83 --DQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp --HHHCTTCCEEECCSCCCCCGGGG-GGGGGCTTCCEEECCSSGGG
T ss_pred --cccccccccceeccccccccccc-cccccccccchhhcCCCccc
Confidence 34567777777777776655431 23445555555555555553
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.1e-11 Score=109.66 Aligned_cols=91 Identities=19% Similarity=0.112 Sum_probs=74.7
Q ss_pred cccEEECcCC-ccCccCCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCchhccCCCCCCeeec
Q 006657 453 LVRCMDLSGN-NLSGDIPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQSISSLTFLSHLNL 531 (636)
Q Consensus 453 ~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 531 (636)
++++|++++| .++...+..|.++++|+.|+|++|+++...|..|..+++|++|+|++|+++...+..+. ...|++|+|
T Consensus 32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L~L 110 (156)
T d2ifga3 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELVL 110 (156)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEEEC
T ss_pred ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccccccccc
Confidence 3788899766 48766667899999999999999999987788899999999999999999954444454 447999999
Q ss_pred cCCcCcccCCCCC
Q 006657 532 SDNNLTGKIPLGT 544 (636)
Q Consensus 532 s~N~l~g~ip~~~ 544 (636)
++|++.|.+-..+
T Consensus 111 ~~Np~~C~C~~~~ 123 (156)
T d2ifga3 111 SGNPLHCSCALRW 123 (156)
T ss_dssp CSSCCCCCGGGHH
T ss_pred CCCcccCCchHHH
Confidence 9999988775433
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.19 E-value=8.4e-13 Score=122.14 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=77.6
Q ss_pred ccchHHHHhhhcCceEecCCCcCcccCccccCCCCCCCEEEccCccCccccchhhhhhhhhccccCCCccccccccceee
Q 006657 354 NIPAWIGEKLLRNLILRLRSNKFDGQIPAELCRLTSLHILDLSHNNFSGTLPRCINNLTAMMNQENSMETDKEYDTFTIE 433 (636)
Q Consensus 354 ~ip~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 433 (636)
.+|..+.. +++|++|+|++|+++ .++ .+..+++|++|++++|+++ .+|.....+.
T Consensus 39 ~l~~sl~~-L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~--------------------- 93 (198)
T d1m9la_ 39 KMDATLST-LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVAD--------------------- 93 (198)
T ss_dssp CCHHHHHH-TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHH---------------------
T ss_pred hhhhHHhc-ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccc---------------------
Confidence 34455554 677777777777776 333 4666777777777777765 3443332222
Q ss_pred ceEEEEeeccccccccccccccEEECcCCccCccCCcccccccCCCeEeCCCccCcCCCC-ccccCCCCCCEEeCCCCCC
Q 006657 434 LSILVVMKGRELAYNTMLKLVRCMDLSGNNLSGDIPEEMTNLLALQSLNLSHNFLAGKIP-ENVGAMRSLESIDFSGNLL 512 (636)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip-~~~~~l~~L~~L~Ls~N~l 512 (636)
.|+.|++++|+++. + +.+..+++|++|++++|+++.... ..+..+++|+.|++++|.+
T Consensus 94 -------------------~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 94 -------------------TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -------------------HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred -------------------cccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence 26667777777763 2 236667777777777777763211 3466677777777777766
Q ss_pred CccCchh----------ccCCCCCCeee
Q 006657 513 SGRIPQS----------ISSLTFLSHLN 530 (636)
Q Consensus 513 ~~~~p~~----------l~~l~~L~~L~ 530 (636)
....+.. +..+++|++||
T Consensus 153 ~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 5432221 34556666655
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.17 E-value=1.7e-12 Score=120.06 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=28.5
Q ss_pred ccEEECcCCccCccCC-cccccccCCCeEeCCCccCcCCCCcc----------ccCCCCCCEEe
Q 006657 454 VRCMDLSGNNLSGDIP-EEMTNLLALQSLNLSHNFLAGKIPEN----------VGAMRSLESID 506 (636)
Q Consensus 454 L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~----------~~~l~~L~~L~ 506 (636)
|+.|++++|+++.... ..+..+++|++|++++|++....+.. +..+++|+.||
T Consensus 117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 5555555555552211 24556666666666666655433221 34566777766
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.3e-09 Score=95.99 Aligned_cols=106 Identities=20% Similarity=0.109 Sum_probs=72.2
Q ss_pred CCEEEeecCCCCCCCCCccccCCCCCcEEEcccCC-CCCCCChhhhcCCCCCcEEEccCCcCcccCCccccCCCCCCEEE
Q 006657 225 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE-FDNTLVPSWLFGLSHLVFLDLGFNSFGGPIPDGLQNLTSLEHLD 303 (636)
Q Consensus 225 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 303 (636)
.+.++.+++++. ..| ..+..+++|++|++++|+ ++ .+++..|.++++|++|++++|+++...|..|..+++|++|+
T Consensus 10 ~~~l~c~~~~~~-~~p-~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSL-HHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSCEECCSSCCC-TTT-TTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCeEEecCCCCc-cCc-ccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 344555555554 334 346666777777776554 55 56667777888888888888888776677778888888888
Q ss_pred ccCCcCCcccchhhhCCCCCCEEEccCcccc
Q 006657 304 LRSNNFISSIPTWLHKFTRLEYLSLRENRLQ 334 (636)
Q Consensus 304 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 334 (636)
|++|+++...+..+.. .+|++|+|++|++.
T Consensus 87 Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 87 LSFNALESLSWKTVQG-LSLQELVLSGNPLH 116 (156)
T ss_dssp CCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred ccCCCCcccChhhhcc-ccccccccCCCccc
Confidence 8888887444444433 46777877777764
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=6.9e-08 Score=85.26 Aligned_cols=80 Identities=24% Similarity=0.182 Sum_probs=48.1
Q ss_pred cccccEEECcCCccCcc--CCcccccccCCCeEeCCCccCcCCCCccccCCCCCCEEeCCCCCCCccCch-------hcc
Q 006657 451 LKLVRCMDLSGNNLSGD--IPEEMTNLLALQSLNLSHNFLAGKIPENVGAMRSLESIDFSGNLLSGRIPQ-------SIS 521 (636)
Q Consensus 451 ~~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~ 521 (636)
++.|++|+|++|+++.. ++..+..+++|+.|+|++|.++..-+-.+.....|+.|++++|.+...... .+.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~ 143 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence 34577777777777643 234456677777777777777743332333344677777777777654332 244
Q ss_pred CCCCCCeee
Q 006657 522 SLTFLSHLN 530 (636)
Q Consensus 522 ~l~~L~~L~ 530 (636)
.+++|++||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 566676664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.1e-07 Score=83.85 Aligned_cols=64 Identities=27% Similarity=0.152 Sum_probs=27.2
Q ss_pred cCCCCCcEEEccCCcCcccC--CccccCCCCCCEEEccCCcCCcccchhhhCCCCCCEEEccCccc
Q 006657 270 FGLSHLVFLDLGFNSFGGPI--PDGLQNLTSLEHLDLRSNNFISSIPTWLHKFTRLEYLSLRENRL 333 (636)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 333 (636)
..+++|++|+|++|+++..- +..+..+++|+.|++++|.++...+-.+....+|+.|++++|++
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl 127 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence 34455555555555554321 12233444555555555554432222222223344444444443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.59 E-value=9e-06 Score=71.54 Aligned_cols=93 Identities=9% Similarity=0.034 Sum_probs=47.3
Q ss_pred CCCCCCEEeCCCC-CCCCCC---CchhhcCCCCCCEEEccCCccCCCCC----ccCcCCCCCCeEeccCCCCCCcccccc
Q 006657 114 DLKHLVYLDLSNN-NFENNQ---IPVFLGFMGSLRHIDLSRAELTGMIP----HQLGNLFNLQYLDLSIDTHNPISFSFL 185 (636)
Q Consensus 114 ~l~~L~~L~Ls~n-~l~~~~---ip~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 185 (636)
+.++|++|+|+++ .++... +-..+...++|++|++++|.+..... ..+...+.|++|++++|.+.......
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~- 91 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR- 91 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH-
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH-
Confidence 4567888888764 354321 22335556677777777776653222 22334456666666666554321111
Q ss_pred cccccccccCCCCCcEEEccCCCCC
Q 006657 186 YLENFSWLSGLSLLKHLDLTGVDLS 210 (636)
Q Consensus 186 ~~~~l~~l~~l~~L~~L~Ls~n~l~ 210 (636)
-...+...++|++|++++|...
T Consensus 92 ---l~~aL~~n~sL~~L~l~~n~~~ 113 (167)
T d1pgva_ 92 ---LLRSTLVTQSIVEFKADNQRQS 113 (167)
T ss_dssp ---HHHHTTTTCCCSEEECCCCSSC
T ss_pred ---HHHHHHhCCcCCEEECCCCcCC
Confidence 1122444455555555555433
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.53 E-value=3.3e-05 Score=67.79 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=51.2
Q ss_pred cccEEECcCCccCccC----CcccccccCCCeEeCCCccCcCC----CCccccCCCCCCEEeCCCCCCCcc-------Cc
Q 006657 453 LVRCMDLSGNNLSGDI----PEEMTNLLALQSLNLSHNFLAGK----IPENVGAMRSLESIDFSGNLLSGR-------IP 517 (636)
Q Consensus 453 ~L~~L~Ls~N~l~g~~----p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~Ls~N~l~~~-------~p 517 (636)
.|+.|+|++|.++..- ...+...+.|++|+|++|.++.. +-..+...++|++|++++|.+... +.
T Consensus 45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~ 124 (167)
T d1pgva_ 45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 124 (167)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence 3666666666665322 22334456677777777776643 223355567788888887765432 34
Q ss_pred hhccCCCCCCeeeccCCcC
Q 006657 518 QSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 518 ~~l~~l~~L~~L~ls~N~l 536 (636)
..+...++|+.|+++++..
T Consensus 125 ~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 125 MAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCccEeeCcCCCc
Confidence 4555667888888877653
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.89 E-value=4.7e-05 Score=66.68 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=36.9
Q ss_pred cCCCCCCEEeCCC-CCCCCCC---CchhhcCCCCCCEEEccCCccCCCCC----ccCcCCCCCCeEeccCCCCC
Q 006657 113 LDLKHLVYLDLSN-NNFENNQ---IPVFLGFMGSLRHIDLSRAELTGMIP----HQLGNLFNLQYLDLSIDTHN 178 (636)
Q Consensus 113 ~~l~~L~~L~Ls~-n~l~~~~---ip~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~~~ 178 (636)
.+.+.|++|+|++ +.++... +-..+...++|++|++++|.+..... ..+...+.++.++++.|.+.
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 4557778888876 3454321 22334456777777777776653321 22334556666666665443
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| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.65 E-value=0.00035 Score=60.84 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=29.5
Q ss_pred ccCCCeEeCCCccCcCC----CCccccCCCCCCEEeC--CCCCCCc----cCchhccCCCCCCeeeccCCcC
Q 006657 475 LLALQSLNLSHNFLAGK----IPENVGAMRSLESIDF--SGNLLSG----RIPQSISSLTFLSHLNLSDNNL 536 (636)
Q Consensus 475 l~~L~~L~Ls~N~l~~~----ip~~~~~l~~L~~L~L--s~N~l~~----~~p~~l~~l~~L~~L~ls~N~l 536 (636)
.+.++.+++++|.++.. +-..+...++|+.++| ++|.+.. .+...+...+.|++|++++++.
T Consensus 73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 34455555555544322 1233444455554333 3444432 2334445566666666666543
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