Citrus Sinensis ID: 006659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630------
Protein Sequence
MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ
Secondary Structure (PSIPRED)
ccEEEEEEccccccccccHHHHHHHHHHccccccccccccEEEccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEcHHHccHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccEEEEEEEccccccEEEEEEccccEEEEEEccEEEEEEccEEEEEEccEEcccccccccEEEEEcccccccccccccccHHHHccccHHHHHHHcccccccccccccEEEcccccccHHHHcccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccEEEEEcccHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEEccccccHHHHHHccHHHHHHHHHHcccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccHHccccHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccEEEEEEccHHHHHHHHHHHccccccccccccccccEEEEEEEccccccccccccccEEEccccEEEEEEEEccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEccccEEEEEccccEEEEccccEEEEccccEccccEcccEEEEEEccHHHHcccccccHHHHHHHcHHHHHHHHHcccEcccccccccEEEEcccccHHHHHHHccEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEHHHHHcccccccccEEEEEEEcccccHHHHHHHHHHHcccccEEEEEcccccHHHHcccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccEEEEEEcHHHHHHHHHHHHHHHHHHccEEEEEEHHHccccHHHHccccccEEEEcccHHHHHHHHHHHHHcHHHcccEEEEEEHcccHccccEccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MCGIFAYLNYGVNRERRYILQVLFNGLRrleyrgydsagiciddssspsplpspsssvngcpplvfrqegNIESLVKSVYEEVAETELNLEESFSIHAGIahtrwathgepaprnshpqtsgagneFLVVHNGVITNYEVLKETLIrhgftfesetdtevIPKLAKFVFDkaneeegdqpvtFSQVVVEVMRHLEGAYALIFKsqhypneliackrgsplllgvkdGAVSILKfdnakgrnggtyarpaSVQRALSILEMEVEQINKGNYEHYMQKEiheqpesltttmrgrlirggsckaKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPileelsdlpvtMEIASDLvdrqapiyredtAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGilagemkhgplalvdenlpiLVIATRDACFSKQQSVIQQLHARKGRLIVMcskgdaasifpggscrvievpqvedclqpviniVPLQLLAYHLTVLrgynvdqprnlaksvttq
Flexible Loop (DISEMBL)
MCGIFAYLnygvnrerRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFtfesetdtevIPKLAKFVFDKANeeegdqpvTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKfdnakgrnggtyarPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRggsckaksvllgglkdhlktirrsrrivfIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRgynvdqprnlaksvttq
Low Complexity Region (SEG)
MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDssspsplpspsssVNGCPPLVFRQEGNIESLVKSVYeevaetelnleeSFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ
Disordered region (IsUnstruct)
*CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICI********************PLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWAT*****************NEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKAN****DQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYM*************TMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVD************
Disordered Region (DISOPRED)
MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ
Disordered Region (DISEMBL)
MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDS************VNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWAT*************SGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRN********
Disordered Region (DISPRO)
MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPL*SPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNL*K*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	636	2.2.26 [Sep-21-2011]
Q4KMC4	682	Glutamine--fructose-6-pho	yes	no	0.594	0.554	0.591	1e-134
Q9Z2Z9	682	Glutamine--fructose-6-pho	yes	no	0.594	0.554	0.591	1e-134
O94808	682	Glutamine--fructose-6-pho	yes	no	0.594	0.554	0.583	1e-132
Q08DQ2	682	Glutamine--fructose-6-pho	yes	no	0.594	0.554	0.583	1e-132
Q8KG38	614	Glutamine--fructose-6-pho	yes	no	0.930	0.964	0.390	1e-132
P47856	697	Glutamine--fructose-6-pho	no	no	0.627	0.572	0.550	1e-129
Q06210	699	Glutamine--fructose-6-pho	no	no	0.627	0.570	0.550	1e-129
P82808	681	Glutamine--fructose-6-pho	no	no	0.594	0.555	0.575	1e-128
P14742	717	Glutamine--fructose-6-pho	yes	no	0.603	0.535	0.565	1e-123
Q8AAB1	614	Glutamine--fructose-6-pho	yes	no	0.927	0.960	0.384	1e-122

>sp|Q4KMC4|GFPT2_RAT Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Rattus norvegicus GN=Gfpt2 PE=2 SV=3

 Score =  478 bits (1229), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/384 (59%), Positives = 297/384 (77%), Gaps = 6/384 (1%)

Query: 253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
           RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct: 305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query: 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
           LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct: 361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query: 373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
           +SQSGETADTL AL Y  + GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct: 421 ISQSGETADTLLALRYCKDRGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query: 433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
           SQ + + M  L +  D IS Q RR+ II GL  LP  ++EVL LD+++  LA +L  ++S
Sbjct: 481 SQFISLVMFGLMMSEDRISLQTRRQEIIRGLRSLPELIKEVLSLDEKIHDLALELYTQRS 540

Query: 493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
           LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P++++  +D CF
Sbjct: 541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKQMPVIMVIMKDPCF 600

Query: 553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
           +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct: 601 AKCQNALQQVTARQGRPIILCSKDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query: 613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
           +HL VLRGY+VD PRNLAKSVT +
Sbjct: 659 FHLAVLRGYDVDFPRNLAKSVTVE 682

Controls the flux of glucose into the hexosamine pathway. Most likely involved in regulating the availability of precursors for N- and O-linked glycosylation of proteins.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 6

>sp|Q9Z2Z9|GFPT2_MOUSE Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Mus musculus GN=Gfpt2 PE=2 SV=3

 Score =  478 bits (1229), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/384 (59%), Positives = 297/384 (77%), Gaps = 6/384 (1%)

Query: 253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
           RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct: 305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query: 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
           LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct: 361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query: 373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
           +SQSGETADTL AL Y  + GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct: 421 ISQSGETADTLLALRYCKDRGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query: 433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
           SQ + + M  L +  D IS Q RR+ II GL  LP  ++EVL LD+++  LA +L  ++S
Sbjct: 481 SQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLDEKIHDLALELYTQRS 540

Query: 493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
           LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P++++  +D CF
Sbjct: 541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKQMPVIMVIMKDPCF 600

Query: 553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
           +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct: 601 AKCQNALQQVTARQGRPIILCSKDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query: 613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
           +HL VLRGY+VD PRNLAKSVT +
Sbjct: 659 FHLAVLRGYDVDFPRNLAKSVTVE 682

Controls the flux of glucose into the hexosamine pathway. Most likely involved in regulating the availability of precursors for N- and O-linked glycosylation of proteins.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|O94808|GFPT2_HUMAN Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3

 Score =  474 bits (1219), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/384 (58%), Positives = 297/384 (77%), Gaps = 6/384 (1%)

Query: 253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
           RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct: 305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query: 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
           LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct: 361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query: 373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
           +SQSGETADTL AL Y  + GAL VG+TNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct: 421 ISQSGETADTLLALRYCKDRGALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query: 433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
           SQ + + M  L +  D IS Q RR+ II GL  LP  ++EVL L++++  LA +L  ++S
Sbjct: 481 SQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLEEKIHDLALELYTQRS 540

Query: 493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
           LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLAL+D+ +P++++  +D CF
Sbjct: 541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCF 600

Query: 553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
           +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct: 601 AKCQNALQQVTARQGRPIILCSKDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query: 613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
           +HL VLRGY+VD PRNLAKSVT +
Sbjct: 659 FHLAVLRGYDVDFPRNLAKSVTVE 682

Controls the flux of glucose into the hexosamine pathway. Most likely involved in regulating the availability of precursors for N- and O-linked glycosylation of proteins.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q08DQ2|GFPT2_BOVIN Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Bos taurus GN=GFPT2 PE=1 SV=1

 Score =  473 bits (1217), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/384 (58%), Positives = 295/384 (76%), Gaps = 6/384 (1%)

Query: 253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
           RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct: 305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query: 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
           LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct: 361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query: 373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
           +SQSGETADTL AL Y  +  AL VG+TNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct: 421 ISQSGETADTLLALRYCKDRRALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query: 433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
           SQ + + M  L +  D IS Q RR  II GL  LP  ++EVL LD+++  LA +L  ++S
Sbjct: 481 SQFISLVMFGLMMSEDRISLQNRRREIIHGLKSLPELIKEVLSLDEKIHDLALELYTQRS 540

Query: 493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
           LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLAL+D+ +P++++  +D CF
Sbjct: 541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCF 600

Query: 553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
           +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct: 601 AKCQNALQQVTARQGRPIILCSKDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query: 613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
           +HL VLRGY+VD PRNLAKSVT +
Sbjct: 659 FHLAVLRGYDVDFPRNLAKSVTVE 682

Controls the flux of glucose into the hexosamine pathway. Most likely involved in regulating the availability of precursors for N- and O-linked glycosylation of proteins.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q8KG38|GLMS_CHLTE Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=glmS PE=3 SV=3

 Score =  471 bits (1211), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/658 (39%), Positives = 401/658 (60%), Gaps = 66/658 (10%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           MCGI  Y+       RR    +L NGL+RLEYRGYDSAG+ +               +NG
Sbjct: 1   MCGIIGYIG------RREAAPLLLNGLKRLEYRGYDSAGMAV---------------LNG 39

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHA--GIAHTRWATHGEPAPRNSHP 118
              +  +++G++ +L         E  LN+  +  + A  GIAHTRWATHG+P+ RN+HP
Sbjct: 40  SMKM-LKKKGSVSNL---------EELLNVSGTVMLGATVGIAHTRWATHGDPSDRNAHP 89

Query: 119 QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGD 178
             + +G+   ++HNG+I NY  LK+ L+  G+ FES+TD+EV+  L   ++      + D
Sbjct: 90  HMNVSGD-IALIHNGIIENYSALKQELMGEGYVFESDTDSEVLVHLIDRIW------KND 142

Query: 179 QPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG-------AVSI 231
             +     V + +RH+EGAY +   S   P++++  ++GSPL++G+ DG       A  I
Sbjct: 143 SALGLEGAVRQALRHVEGAYGICVVSSREPDKIVVARKGSPLVIGLGDGEFFIASDAAPI 202

Query: 232 LKFDN-----------AKGRNGGTYARPASV--QRALSILEMEVEQINKGNYEHYMQKEI 278
           ++  N              R+  T     +V  Q+ ++ L+  +E+I KG +EH+M KEI
Sbjct: 203 VEHTNKVVYLSDGEMAVVTRDSYTVKTIENVEQQKRVTELDFSLEKIEKGGFEHFMLKEI 262

Query: 279 HEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAAR 338
            EQPE +   MRGR+      +   V LGG+ D+L  +++++RI+   CGTS++A L   
Sbjct: 263 FEQPEVMRDVMRGRV----RVEEGRVHLGGIHDYLDRLKQAKRIMICACGTSWHAGLIGE 318

Query: 339 PILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVG 398
            ++EE + +PV ++ AS+   R   +  +D  + +SQSGETADTL AL  A E GA+ +G
Sbjct: 319 YLIEEFARIPVEVDYASEFRYRNPIVSSDDVVIVISQSGETADTLAALRLAKEKGAMVMG 378

Query: 399 ITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA 458
           I N VGS I R+T CG++ +AG E+GVASTKA+T+Q++V+ MLA+A+      +Q   + 
Sbjct: 379 ICNVVGSTIPRETLCGMYTHAGPEVGVASTKAFTAQVIVLFMLAMALSKGRTISQEEIKL 438

Query: 459 IIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALM 518
            +  L ++P+KV  +L+ +  +K +A +L   ++ L  GRGYN+  ALEGALK+KE++ +
Sbjct: 439 NLRELAEVPDKVAWILEQNDAIKEIAVKLKDARNALYLGRGYNFPVALEGALKLKEISYI 498

Query: 519 HSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDA 578
           H+EG  A EMKHGP+AL+DE++P++VIATRD  ++K  S I+++ +RKGR+I + S+GD 
Sbjct: 499 HAEGYPAAEMKHGPIALIDEDMPVIVIATRDNTYAKILSNIEEVRSRKGRVIAIASEGDR 558

Query: 579 ASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
                  +  VI +PQ    + P++ ++PLQLL+YH+  LRG NVD+PRNLAKSVT +
Sbjct: 559 E--IERLTEDVIYIPQASAAVLPLLTVIPLQLLSYHVATLRGCNVDRPRNLAKSVTVE 614

Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|P47856|GFPT1_MOUSE Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Mus musculus GN=Gfpt1 PE=1 SV=3

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/414 (55%), Positives = 303/414 (73%), Gaps = 15/414 (3%)

Query: 223 GVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQP 282
            V DG +SI +     G + G         RA+  L+ME++QI KGN+  +MQKEI EQP
Sbjct: 299 AVVDGRLSIHRIKRTAGDHPG---------RAVQTLQMELQQIMKGNFSSFMQKEIFEQP 349

Query: 283 ESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILE 342
           ES+  TMRGR+    +    +V LGGLKDH+K I+R RR++ I CGTSY+A +A R +LE
Sbjct: 350 ESVVNTMRGRV----NFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLE 405

Query: 343 ELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNT 402
           EL++LPV +E+ASD +DR  P++R+D   F+SQSGETADTL  L Y  E GAL VGITNT
Sbjct: 406 ELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLMGLRYCKERGALTVGITNT 465

Query: 403 VGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDG 462
           VGS+I+R+T CGVHINAG EIGVASTKAYTSQ V + M AL +  D IS Q RR+ I+ G
Sbjct: 466 VGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMLG 525

Query: 463 LCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEG 522
           L  LP+ ++EVL +D E++ LA +L  ++S+L+ GRGY+YAT LEGALK+KE+  MHSEG
Sbjct: 526 LKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEG 585

Query: 523 ILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIF 582
           ILAGE+KHGPLALVD+ +P+++I  RD  ++K Q+ +QQ+ AR+GR +V+C K D  +I 
Sbjct: 586 ILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETI- 644

Query: 583 PGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
              + R I+VP   DCLQ +++++PLQLLA+HL VLRGY+VD PRNLAKSVT +
Sbjct: 645 -KNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE 697

Controls the flux of glucose into the hexosamine pathway. Most likely involved in regulating the availability of precursors for N- and O-linked glycosylation of proteins.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q06210|GFPT1_HUMAN Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1 PE=1 SV=3

 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/414 (55%), Positives = 303/414 (73%), Gaps = 15/414 (3%)

Query: 223 GVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQP 282
            V DG +SI +     G + G         RA+  L+ME++QI KGN+  +MQKEI EQP
Sbjct: 301 AVVDGRLSIHRIKRTAGDHPG---------RAVQTLQMELQQIMKGNFSSFMQKEIFEQP 351

Query: 283 ESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILE 342
           ES+  TMRGR+    +    +V LGGLKDH+K I+R RR++ I CGTSY+A +A R +LE
Sbjct: 352 ESVVNTMRGRV----NFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLE 407

Query: 343 ELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNT 402
           EL++LPV +E+ASD +DR  P++R+D   F+SQSGETADTL  L Y  E GAL VGITNT
Sbjct: 408 ELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNT 467

Query: 403 VGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDG 462
           VGS+I+R+T CGVHINAG EIGVASTKAYTSQ V + M AL +  D IS Q RR+ I+ G
Sbjct: 468 VGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMLG 527

Query: 463 LCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEG 522
           L  LP+ ++EVL +D E++ LA +L  ++S+L+ GRGY+YAT LEGALK+KE+  MHSEG
Sbjct: 528 LKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEG 587

Query: 523 ILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIF 582
           ILAGE+KHGPLALVD+ +P+++I  RD  ++K Q+ +QQ+ AR+GR +V+C K D  +I 
Sbjct: 588 ILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETI- 646

Query: 583 PGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
              + R I+VP   DCLQ +++++PLQLLA+HL VLRGY+VD PRNLAKSVT +
Sbjct: 647 -KNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE 699

Controls the flux of glucose into the hexosamine pathway. Most likely involved in regulating the availability of precursors for N- and O-linked glycosylation of proteins.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|P82808|GFPT1_RAT Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Rattus norvegicus GN=Gfpt1 PE=1 SV=3

 Score =  459 bits (1182), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/384 (57%), Positives = 293/384 (76%), Gaps = 6/384 (1%)

Query: 253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
           RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    +    +V LGGLKDH
Sbjct: 304 RAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRV----NFDDYTVNLGGLKDH 359

Query: 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
           +K I+R RR++ I CGTSY+A +A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct: 360 IKEIQRCRRLILIACGTSYHAGMATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 419

Query: 373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
           +SQSGETADTL  L Y  E GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct: 420 ISQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYT 479

Query: 433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
           SQ V + M AL +  D IS Q RR+ I+ GL  LP+ ++EVL +D E++ LA +L  ++S
Sbjct: 480 SQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKS 539

Query: 493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
           +L+ GRGY+YAT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P+++I  RD  +
Sbjct: 540 VLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTY 599

Query: 553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
           +K Q+ +QQ+ AR+GR +V+C K D  +I    + R I+VP   DCLQ +++++PLQLLA
Sbjct: 600 AKCQNALQQVVARQGRPVVICDKEDTETI--KNTKRTIKVPHSVDCLQGILSVIPLQLLA 657

Query: 613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
           +HL VLRGY+VD PRNLAKSVT +
Sbjct: 658 FHLAVLRGYDVDFPRNLAKSVTVE 681

Controls the flux of glucose into the hexosamine pathway. Most likely involved in regulating the availability of precursors for N- and O-linked glycosylation of proteins.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|P14742|GFA1_YEAST Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GFA1 PE=1 SV=4

 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/391 (56%), Positives = 289/391 (73%), Gaps = 7/391 (1%)

Query: 249 ASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGG 308
           AS+ R++  LEME+ QI KG Y+H+MQKEI+EQPES   TMRGR+      +   V+LGG
Sbjct: 331 ASMTRSIQTLEMELAQIMKGPYDHFMQKEIYEQPESTFNTMRGRI----DYENNKVILGG 386

Query: 309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYRED 368
           LK  L  +RR+RR++ I CGTSY++ LA R I EELSD+PV++E+ASD +DR+ P++R+D
Sbjct: 387 LKAWLPVVRRARRLIMIACGTSYHSCLATRAIFEELSDIPVSVELASDFLDRKCPVFRDD 446

Query: 369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST 428
             VFVSQSGETADT+ AL Y  E GAL VGI N+VGS+I+R THCGVHINAG EIGVAST
Sbjct: 447 VCVFVSQSGETADTMLALNYCLERGALTVGIVNSVGSSISRVTHCGVHINAGPEIGVAST 506

Query: 429 KAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVL-AKQL 487
           KAYTSQ + + M AL++  D +S   RR  II GL  +P ++++VLKL+  +K L A +L
Sbjct: 507 KAYTSQYIALVMFALSLSDDRVSKIDRRIEIIQGLKLIPGQIKQVLKLEPRIKKLCATEL 566

Query: 488 IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIAT 547
             ++SLL+ GRGY +A ALEGALK+KE++ MHSEG+LAGE+KHG LALVDENLPI+   T
Sbjct: 567 KDQKSLLLLGRGYQFAAALEGALKIKEISYMHSEGVLAGELKHGVLALVDENLPIIAFGT 626

Query: 548 RDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSC--RVIEVPQVEDCLQPVINI 605
           RD+ F K  S I+Q+ ARKG  I++C++ D        S   + +EVPQ  DCLQ +INI
Sbjct: 627 RDSLFPKVVSSIEQVTARKGHPIIICNENDEVWAQKSKSIDLQTLEVPQTVDCLQGLINI 686

Query: 606 VPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
           +PLQL++Y L V +G +VD PRNLAKSVT +
Sbjct: 687 IPLQLMSYWLAVNKGIDVDFPRNLAKSVTVE 717

Involved in amino sugar synthesis (formation of chitin, supplies the amino sugars of asparagine-linked oligosaccharides of glycoproteins).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q8AAB1|GLMS_BACTN Glutamine--fructose-6-phosphate aminotransferase [isomerizing] OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=glmS PE=3 SV=2

 Score =  439 bits (1129), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/660 (38%), Positives = 377/660 (57%), Gaps = 70/660 (10%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           MCGI  Y+       +R    +L  GL+RLEYRGYDSAG+          L S +  +N 
Sbjct: 1   MCGIVGYIG------KRKAYPILIKGLKRLEYRGYDSAGVA---------LISDNQQLN- 44

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQT 120
               V++ +G +  L   V           ++  S   GIAHTRWATHGEP   N+HP  
Sbjct: 45  ----VYKTKGKVSELENFV----------TQKDISGTVGIAHTRWATHGEPCSVNAHPHY 90

Query: 121 SGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQP 180
           S +  +  ++HNG+I NY VLKE L   G+ F+S TDTEV+ +L +++       +    
Sbjct: 91  SSS-EKLALIHNGIIENYAVLKEKLQAKGYVFKSSTDTEVLVQLIEYM-------KVTNR 142

Query: 181 VTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-------GAVSILK 233
           V     V   +  + GAYA+    + +P E+IA ++ SPL++G+ +        A  I++
Sbjct: 143 VDLLTAVQLALNEVIGAYAIAILDKEHPEEIIAARKSSPLVVGIGEDEFFLASDATPIVE 202

Query: 234 FDNA-----KGR----NGGTYARPASVQRA-----LSILEMEVEQINKGNYEHYMQKEIH 279
           + +       G     N G   +   +        +  +E+++ Q+ KG Y H+M KEI 
Sbjct: 203 YTDKVVYLEDGEIAVINRGKELKVVDLSNVEMTPEVKKVELKLGQLEKGGYPHFMLKEIF 262

Query: 280 EQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARP 339
           EQP+ +   MRGR+    + +A +V+L  + D+ + +  ++R + + CGTS++A L  + 
Sbjct: 263 EQPDCIHDCMRGRI----NVEANNVVLSAVIDYKEKLLNAKRFIIVACGTSWHAGLIGKH 318

Query: 340 ILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGI 399
           ++E    +PV +E AS+   R   I   D  + +SQSGETADTL A+E A   GA   GI
Sbjct: 319 LIESFCRIPVEVEYASEFRYRDPVIDEHDVVIAISQSGETADTLAAVELAKSRGAFIYGI 378

Query: 400 TNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIG---GDTISTQARR 456
            N +GS+I R TH G +I+ G EIGVASTKA+T Q+ V+ MLAL +    G    TQ   
Sbjct: 379 CNAIGSSIPRATHTGSYIHVGPEIGVASTKAFTGQVTVLTMLALTLAREKGTIDETQYLN 438

Query: 457 EAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVA 516
             I+  L  +P K++EVLKL+ ++  L+K      + +  GRGY+Y  ALEGALK+KE++
Sbjct: 439 --IVRELNSIPGKMKEVLKLNDKLAELSKTFTYAHNFIYLGRGYSYPVALEGALKLKEIS 496

Query: 517 LMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKG 576
            +H+EG  A EMKHGP+AL+D  +P++VIAT++  + K  S IQ++ ARKG++I   +KG
Sbjct: 497 YIHAEGYPAAEMKHGPIALIDAEMPVVVIATQNGLYEKVLSNIQEIKARKGKVIAFVTKG 556

Query: 577 DAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
           D   I     C  IE+P+  +CL P+I  VPLQLLAYH+ V +G +VDQPRNLAKSVT +
Sbjct: 557 DTV-ISKIADCS-IELPETIECLDPLITTVPLQLLAYHIAVCKGMDVDQPRNLAKSVTVE 614

Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.

Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 6

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	636
UNIPROTKB|O94808	682	GFPT2 "Glutamine--fructose-6-p	0.594	0.554	0.583	4.6e-174
UNIPROTKB|Q08DQ2	682	GFPT2 "Glutamine--fructose-6-p	0.594	0.554	0.583	4.6e-174
UNIPROTKB|F1PGJ3	682	GFPT2 "Uncharacterized protein	0.594	0.554	0.583	9.6e-174
RGD|1303097	682	Gfpt2 "glutamine-fructose-6-ph	0.594	0.554	0.591	2e-173
MGI|MGI:1338883	682	Gfpt2 "glutamine fructose-6-ph	0.594	0.554	0.591	3.2e-173
ZFIN|ZDB-GENE-070423-1	682	gfpt1 "glutamine-fructose-6-ph	0.630	0.587	0.562	3.2e-173
UNIPROTKB|F1P1F9	681	GFPT2 "Uncharacterized protein	0.594	0.555	0.588	1.8e-172
UNIPROTKB|Q5ZIG5	699	GFPT1 "Uncharacterized protein	0.625	0.569	0.549	9.8e-172
RGD|1549703	681	Gfpt1 "glutamine fructose-6-ph	0.594	0.555	0.575	3.3e-171
UNIPROTKB|P82808	681	Gfpt1 "Glutamine--fructose-6-p	0.594	0.555	0.575	3.3e-171

UNIPROTKB|O94808 GFPT2 "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2" [Homo sapiens (taxid:9606)]

 Score = 1174 (418.3 bits), Expect = 4.6e-174, Sum P(2) = 4.6e-174
 Identities = 224/384 (58%), Positives = 297/384 (77%)

Query:   253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
             RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct:   305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query:   313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
             LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct:   361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query:   373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
             +SQSGETADTL AL Y  + GAL VG+TNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct:   421 ISQSGETADTLLALRYCKDRGALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query:   433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
             SQ + + M  L +  D IS Q RR+ II GL  LP  ++EVL L++++  LA +L  ++S
Sbjct:   481 SQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLEEKIHDLALELYTQRS 540

Query:   493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
             LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLAL+D+ +P++++  +D CF
Sbjct:   541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCF 600

Query:   553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
             +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct:   601 AKCQNALQQVTARQGRPIILCSKDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query:   613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
             +HL VLRGY+VD PRNLAKSVT +
Sbjct:   659 FHLAVLRGYDVDFPRNLAKSVTVE 682

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=IEA

GO:0006048 "UDP-N-acetylglucosamine biosynthetic process" evidence=IEA;TAS

GO:0006002 "fructose 6-phosphate metabolic process" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|Q08DQ2 GFPT2 "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2" [Bos taurus (taxid:9913)]

 Score = 1169 (416.6 bits), Expect = 4.6e-174, Sum P(2) = 4.6e-174
 Identities = 224/384 (58%), Positives = 295/384 (76%)

Query:   253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
             RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct:   305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query:   313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
             LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct:   361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query:   373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
             +SQSGETADTL AL Y  +  AL VG+TNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct:   421 ISQSGETADTLLALRYCKDRRALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query:   433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
             SQ + + M  L +  D IS Q RR  II GL  LP  ++EVL LD+++  LA +L  ++S
Sbjct:   481 SQFISLVMFGLMMSEDRISLQNRRREIIHGLKSLPELIKEVLSLDEKIHDLALELYTQRS 540

Query:   493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
             LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLAL+D+ +P++++  +D CF
Sbjct:   541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCF 600

Query:   553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
             +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct:   601 AKCQNALQQVTARQGRPIILCSKDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query:   613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
             +HL VLRGY+VD PRNLAKSVT +
Sbjct:   659 FHLAVLRGYDVDFPRNLAKSVTVE 682

GO:0006048 "UDP-N-acetylglucosamine biosynthetic process" evidence=IEA

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1PGJ3 GFPT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1169 (416.6 bits), Expect = 9.6e-174, Sum P(2) = 9.6e-174
 Identities = 224/384 (58%), Positives = 296/384 (77%)

Query:   253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
             RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct:   305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query:   313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
             LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct:   361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query:   373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
             +SQSGETADTL AL Y  +  AL VG+TNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct:   421 ISQSGETADTLLALRYCKDRRALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query:   433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
             SQ + + M  L +  D IS Q RR+ II GL  LP  ++EVL LD+++  LA +L  ++S
Sbjct:   481 SQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPGLIKEVLSLDEKIHDLALELYTQRS 540

Query:   493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
             LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLAL+D+ +PI+++  +D CF
Sbjct:   541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPIIMVIMKDPCF 600

Query:   553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
             +K Q+ +QQ+ AR+GR I++CS+ D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct:   601 AKCQNALQQITARQGRPIILCSRDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query:   613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
             +HL VLRGY+VD PRNLAKSVT +
Sbjct:   659 FHLAVLRGYDVDFPRNLAKSVTVE 682

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=IEA

RGD|1303097 Gfpt2 "glutamine-fructose-6-phosphate transaminase 2" [Rattus norvegicus (taxid:10116)]

 Score = 1182 (421.1 bits), Expect = 2.0e-173, Sum P(2) = 2.0e-173
 Identities = 227/384 (59%), Positives = 297/384 (77%)

Query:   253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
             RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct:   305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query:   313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
             LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct:   361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query:   373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
             +SQSGETADTL AL Y  + GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct:   421 ISQSGETADTLLALRYCKDRGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query:   433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
             SQ + + M  L +  D IS Q RR+ II GL  LP  ++EVL LD+++  LA +L  ++S
Sbjct:   481 SQFISLVMFGLMMSEDRISLQTRRQEIIRGLRSLPELIKEVLSLDEKIHDLALELYTQRS 540

Query:   493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
             LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P++++  +D CF
Sbjct:   541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKQMPVIMVIMKDPCF 600

Query:   553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
             +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct:   601 AKCQNALQQVTARQGRPIILCSKDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query:   613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
             +HL VLRGY+VD PRNLAKSVT +
Sbjct:   659 FHLAVLRGYDVDFPRNLAKSVTVE 682

GO:0003674 "molecular_function" evidence=ND

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006048 "UDP-N-acetylglucosamine biosynthetic process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

MGI|MGI:1338883 Gfpt2 "glutamine fructose-6-phosphate transaminase 2" [Mus musculus (taxid:10090)]

 Score = 1180 (420.4 bits), Expect = 3.2e-173, Sum P(2) = 3.2e-173
 Identities = 227/384 (59%), Positives = 297/384 (77%)

Query:   253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
             RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct:   305 RAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRV----NFETNTVLLGGLKDH 360

Query:   313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
             LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct:   361 LKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 420

Query:   373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
             +SQSGETADTL AL Y  + GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct:   421 ISQSGETADTLLALRYCKDRGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYT 480

Query:   433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
             SQ + + M  L +  D IS Q RR+ II GL  LP  ++EVL LD+++  LA +L  ++S
Sbjct:   481 SQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLDEKIHDLALELYTQRS 540

Query:   493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
             LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P++++  +D CF
Sbjct:   541 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKQMPVIMVIMKDPCF 600

Query:   553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
             +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct:   601 AKCQNALQQVTARQGRPIILCSKDDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 658

Query:   613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
             +HL VLRGY+VD PRNLAKSVT +
Sbjct:   659 FHLAVLRGYDVDFPRNLAKSVTVE 682

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

ZFIN|ZDB-GENE-070423-1 gfpt1 "glutamine-fructose-6-phosphate transaminase 1" [Danio rerio (taxid:7955)]

 Score = 1166 (415.5 bits), Expect = 3.2e-173, Sum P(2) = 3.2e-173
 Identities = 234/416 (56%), Positives = 310/416 (74%)

Query:   221 LLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHE 280
             +  V DG +SI +      R  G +  PA   RA+  L+ME++QI KGN+  +MQKEI E
Sbjct:   282 IAAVSDGRLSIHRIK----RTAGDH--PA---RAIQTLQMELQQIMKGNFSSFMQKEIFE 332

Query:   281 QPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPI 340
             QPES+  TMRGR+    + +  +V+LGGLKDH+K I+R RR++ I CGTSY+A +A R +
Sbjct:   333 QPESVVNTMRGRV----NFENNTVILGGLKDHIKEIQRCRRLIMIACGTSYHAGVATRQV 388

Query:   341 LEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGIT 400
             LEEL++LPV +E+ASD +DR  P++R+D   F+SQSGETADTL AL Y  E GAL VGIT
Sbjct:   389 LEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLLALRYCKERGALTVGIT 448

Query:   401 NTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAII 460
             NTVGS+I+R+T CGVHINAG EIGVASTKAYTSQ V + M AL +  D IS Q RR+ II
Sbjct:   449 NTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVALVMFALLMCDDRISVQPRRKEII 508

Query:   461 DGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHS 520
              GL  LP+ ++EVL LD+E++ LA +L  ++S+L+ GRGY+YAT LEGALK+KE+  MHS
Sbjct:   509 QGLRILPDLIKEVLTLDEEIQKLAAELYPQKSVLIMGRGYHYATCLEGALKIKEITYMHS 568

Query:   521 EGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAAS 580
             EGILAGE+KHGPLALVD+ +P+++I  RD  ++K Q+ +QQ+ AR+GR IV+C K D  +
Sbjct:   569 EGILAGELKHGPLALVDKLMPVIMIIMRDHTYTKCQNALQQVVARQGRPIVICDKEDNET 628

Query:   581 IFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
             I    S R I+VP   DCLQ +++++PLQLL++HL VLRGY+VD PRNLAKSVT +
Sbjct:   629 I--NNSKRTIKVPHCVDCLQGILSVIPLQLLSFHLAVLRGYDVDCPRNLAKSVTVE 682

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IMP

GO:0002063 "chondrocyte development" evidence=IMP

GO:0030318 "melanocyte differentiation" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0007519 "skeletal muscle tissue development" evidence=IMP

UNIPROTKB|F1P1F9 GFPT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1174 (418.3 bits), Expect = 1.8e-172, Sum P(2) = 1.8e-172
 Identities = 226/384 (58%), Positives = 294/384 (76%)

Query:   253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
             R +  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    + +  +VLLGGLKDH
Sbjct:   304 RVIQTLQMELQQIMKGNFSAFMQKEIFEQPESVVNTMRGRV----NFENSTVLLGGLKDH 359

Query:   313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
             LK IRR RR++ IGCGTSY+AA+A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct:   360 LKEIRRCRRLIIIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 419

Query:   373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
             +SQSGETADTL AL Y  E  AL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct:   420 ISQSGETADTLMALRYCKERRALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYT 479

Query:   433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
             SQ V + M  L +  D IS Q RR  II GL  LP  ++EVL LD+++  LA +L  ++S
Sbjct:   480 SQFVSLVMFGLMMSEDRISLQKRRREIISGLKSLPEMIKEVLSLDEKIHDLALELYKQRS 539

Query:   493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
             LLV GRGYNYAT LEGALK+KE+  MHSEGILAGE+KHGPLAL+D+ +P++++  +D CF
Sbjct:   540 LLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCF 599

Query:   553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
             +K Q+ +QQ+ AR+GR I++CSK D  S     + + IE+P   DCLQ +++++PLQLL+
Sbjct:   600 TKCQNALQQVTARQGRPIILCSKEDTES--SKFAYKTIELPHTVDCLQGILSVIPLQLLS 657

Query:   613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
             +HL VLRGY+VD PRNLAKSVT +
Sbjct:   658 FHLAVLRGYDVDFPRNLAKSVTVE 681

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

UNIPROTKB|Q5ZIG5 GFPT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1136 (405.0 bits), Expect = 9.8e-172, Sum P(2) = 9.8e-172
 Identities = 227/413 (54%), Positives = 303/413 (73%)

Query:   224 VKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPE 283
             V DG +SI +     G + G         RA+  L+ME++QI KGN+  +MQKEI EQPE
Sbjct:   302 VVDGRLSIHRIKRTAGDHPG---------RAVQTLQMELQQIMKGNFSSFMQKEIFEQPE 352

Query:   284 SLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEE 343
             S+  TMRGR+    +    +V LGGLKDH+K I+R RR++ I CGTSY+A +A R +LEE
Sbjct:   353 SVVNTMRGRV----NFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLEE 408

Query:   344 LSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTV 403
             L++LPV +E+ASD +DR  P++R+D   F+SQSGETADTL  L Y  E GAL VGITNTV
Sbjct:   409 LTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLMGLRYCKERGALTVGITNTV 468

Query:   404 GSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGL 463
             GS+I+R+T CGVHINAG EIGVASTKAYTSQ V + M AL +  D IS Q RR+ I+ GL
Sbjct:   469 GSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMRGL 528

Query:   464 CDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGI 523
               LP+ ++EVL +D E++ LA +L  ++S+L+ GRGY+YAT LEGALK+KE+  MHSEGI
Sbjct:   529 KGLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGI 588

Query:   524 LAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFP 583
             LAGE+KHGPLALVD+ +P+++I  RD  ++K Q+ +QQ+ AR+GR +++C K D  +I  
Sbjct:   589 LAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVIARQGRPVIICDKEDIETI-- 646

Query:   584 GGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
               + R I+VP   DCLQ +++++PLQLLA+HL VLRGY+VD PRNLAKSVT +
Sbjct:   647 KNNKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE 699

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

RGD|1549703 Gfpt1 "glutamine fructose-6-phosphate transaminase 1" [Rattus norvegicus (taxid:10116)]

 Score = 1133 (403.9 bits), Expect = 3.3e-171, Sum P(2) = 3.3e-171
 Identities = 221/384 (57%), Positives = 293/384 (76%)

Query:   253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
             RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    +    +V LGGLKDH
Sbjct:   304 RAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRV----NFDDYTVNLGGLKDH 359

Query:   313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
             +K I+R RR++ I CGTSY+A +A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct:   360 IKEIQRCRRLILIACGTSYHAGMATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 419

Query:   373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
             +SQSGETADTL  L Y  E GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct:   420 ISQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYT 479

Query:   433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
             SQ V + M AL +  D IS Q RR+ I+ GL  LP+ ++EVL +D E++ LA +L  ++S
Sbjct:   480 SQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKS 539

Query:   493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
             +L+ GRGY+YAT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P+++I  RD  +
Sbjct:   540 VLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTY 599

Query:   553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
             +K Q+ +QQ+ AR+GR +V+C K D  +I    + R I+VP   DCLQ +++++PLQLLA
Sbjct:   600 AKCQNALQQVVARQGRPVVICDKEDTETI--KNTKRTIKVPHSVDCLQGILSVIPLQLLA 657

Query:   613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
             +HL VLRGY+VD PRNLAKSVT +
Sbjct:   658 FHLAVLRGYDVDFPRNLAKSVTVE 681

GO:0004360 "glutamine-fructose-6-phosphate transaminase (isomerizing) activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006002 "fructose 6-phosphate metabolic process" evidence=IDA

GO:0006042 "glucosamine biosynthetic process" evidence=IDA

GO:0006047 "UDP-N-acetylglucosamine metabolic process" evidence=IMP

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=IEA;IDA

GO:0032868 "response to insulin stimulus" evidence=IEP

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0045719 "negative regulation of glycogen biosynthetic process" evidence=IMP

GO:0051289 "protein homotetramerization" evidence=IDA

UNIPROTKB|P82808 Gfpt1 "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1" [Rattus norvegicus (taxid:10116)]

 Score = 1133 (403.9 bits), Expect = 3.3e-171, Sum P(2) = 3.3e-171
 Identities = 221/384 (57%), Positives = 293/384 (76%)

Query:   253 RALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDH 312
             RA+  L+ME++QI KGN+  +MQKEI EQPES+  TMRGR+    +    +V LGGLKDH
Sbjct:   304 RAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRV----NFDDYTVNLGGLKDH 359

Query:   313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF 372
             +K I+R RR++ I CGTSY+A +A R +LEEL++LPV +E+ASD +DR  P++R+D   F
Sbjct:   360 IKEIQRCRRLILIACGTSYHAGMATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFF 419

Query:   373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT 432
             +SQSGETADTL  L Y  E GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYT
Sbjct:   420 ISQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYT 479

Query:   433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
             SQ V + M AL +  D IS Q RR+ I+ GL  LP+ ++EVL +D E++ LA +L  ++S
Sbjct:   480 SQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKS 539

Query:   493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
             +L+ GRGY+YAT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P+++I  RD  +
Sbjct:   540 VLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTY 599

Query:   553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
             +K Q+ +QQ+ AR+GR +V+C K D  +I    + R I+VP   DCLQ +++++PLQLLA
Sbjct:   600 AKCQNALQQVVARQGRPVVICDKEDTETI--KNTKRTIKVPHSVDCLQGILSVIPLQLLA 657

Query:   613 YHLTVLRGYNVDQPRNLAKSVTTQ 636
             +HL VLRGY+VD PRNLAKSVT +
Sbjct:   658 FHLAVLRGYDVDFPRNLAKSVTVE 681

GO:0005737 "cytoplasm" evidence=IEA

GO:0016051 "carbohydrate biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q72HF4	GLMS_THET2	2, ., 6, ., 1, ., 1, 6	0.3691	0.9103	0.9586	yes	no
Q890U2	GLMS_CLOTE	2, ., 6, ., 1, ., 1, 6	0.3343	0.9166	0.9588	yes	no
O66648	GLMS_AQUAE	2, ., 6, ., 1, ., 1, 6	0.3636	0.8930	0.9594	yes	no
Q9PH05	GLMS_XYLFA	2, ., 6, ., 1, ., 1, 6	0.3693	0.9229	0.9638	yes	no
Q5ZRP4	GLMS_LEGPH	2, ., 6, ., 1, ., 1, 6	0.3668	0.9166	0.9652	yes	no
Q5X153	GLMS_LEGPA	2, ., 6, ., 1, ., 1, 6	0.3668	0.9166	0.9652	yes	no
Q8FBT4	GLMS_ECOL6	2, ., 6, ., 1, ., 1, 6	0.3626	0.9213	0.9622	yes	no
Q9KUM8	GLMS_VIBCH	2, ., 6, ., 1, ., 1, 6	0.3535	0.9229	0.9622	yes	no
Q8XHZ7	GLMS_CLOPE	2, ., 6, ., 1, ., 1, 6	0.3378	0.9119	0.9508	yes	no
Q8R841	GLMS_THETN	2, ., 6, ., 1, ., 1, 6	0.3504	0.9150	0.9572	yes	no
Q5NHQ9	GLMS_FRATT	2, ., 6, ., 1, ., 1, 6	0.3526	0.9056	0.9411	yes	no
Q6CYJ9	GLMS_ERWCT	2, ., 6, ., 1, ., 1, 6	0.3524	0.9150	0.9540	yes	no
Q97MN6	GLMS_CLOAB	2, ., 6, ., 1, ., 1, 6	0.3373	0.9166	0.9588	yes	no
Q8KG38	GLMS_CHLTE	2, ., 6, ., 1, ., 1, 6	0.3905	0.9308	0.9641	yes	no
Q5E279	GLMS_VIBF1	2, ., 6, ., 1, ., 1, 6	0.3520	0.9229	0.9622	yes	no
P44708	GLMS_HAEIN	2, ., 6, ., 1, ., 1, 6	0.3555	0.9198	0.9590	yes	no
P57963	GLMS_PASMU	2, ., 6, ., 1, ., 1, 6	0.3581	0.9229	0.9622	yes	no
Q8Z9S8	GLMS_YERPE	2, ., 6, ., 1, ., 1, 6	0.3673	0.9088	0.9490	yes	no
Q74GH6	GLMS_GEOSL	2, ., 6, ., 1, ., 1, 6	0.3691	0.9182	0.9589	yes	no
Q6LLH3	GLMS_PHOPR	2, ., 6, ., 1, ., 1, 6	0.3585	0.9198	0.9590	yes	no
Q87F28	GLMS_XYLFT	2, ., 6, ., 1, ., 1, 6	0.3677	0.9229	0.9638	yes	no
Q6F6U8	GLMS_ACIAD	2, ., 6, ., 1, ., 1, 6	0.3613	0.9135	0.9493	yes	no
Q6FZH6	GLMS_BARQU	2, ., 6, ., 1, ., 1, 6	0.3561	0.9213	0.9654	yes	no
Q8AAB1	GLMS_BACTN	2, ., 6, ., 1, ., 1, 6	0.3848	0.9276	0.9609	yes	no
Q8ZKX1	GLMS_SALTY	2, ., 6, ., 1, ., 1, 6	0.3587	0.9056	0.9458	yes	no
Q87SR3	GLMS_VIBPA	2, ., 6, ., 1, ., 1, 6	0.3488	0.9135	0.9524	yes	no
Q7MP62	GLMS_VIBVY	2, ., 6, ., 1, ., 1, 6	0.3559	0.9166	0.9557	yes	no
Q5WSX8	GLMS_LEGPL	2, ., 6, ., 1, ., 1, 6	0.3698	0.9166	0.9652	yes	no
Q8DEF3	GLMS_VIBVU	2, ., 6, ., 1, ., 1, 6	0.3499	0.9166	0.9557	yes	no
Q83IY4	GLMS_SHIFL	2, ., 6, ., 1, ., 1, 6	0.3626	0.9213	0.9622	yes	no
Q67T12	GLMS_SYMTH	2, ., 6, ., 1, ., 1, 6	0.3641	0.9213	0.9622	yes	no
Q5PKV9	GLMS_SALPA	2, ., 6, ., 1, ., 1, 6	0.3587	0.9056	0.9458	yes	no
Q8CX33	GLMS_SHEON	2, ., 6, ., 1, ., 1, 6	0.3556	0.9229	0.9638	yes	no
Q7NA97	GLMS_PHOLL	2, ., 6, ., 1, ., 1, 6	0.3575	0.9198	0.9605	yes	no
Q88BX8	GLMS_PSEPK	2, ., 6, ., 1, ., 1, 6	0.3621	0.9229	0.9607	yes	no
Q663R1	GLMS_YERPS	2, ., 6, ., 1, ., 1, 6	0.3673	0.9088	0.9490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.6.1.16	0.914
3rd Layer	2.6.1	0.921
3rd Layer	5.3.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIX.1506.1	glucosamine-fructose-6-phosphate aminotransferase (EC-2.6.1.16) (676 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.95250001	hypothetical protein (262 aa)	•					•	•		0.971
	fgenesh4_pg.C_scaffold_11322000001	Predicted protein (373 aa)	•			•			•		0.962
	grail3.0020010501	glucosamine 6-phosphate N-acetyltransferase (EC-2.3.1.4) (151 aa)						•	•		0.943
	gw1.IV.836.1	amidophosphoribosyltransferase (EC-2.4.2.14) (485 aa)	•		•			•	•	•	0.932
	gw1.IX.1498.1	SubName- Full=Putative uncharacterized protein; (485 aa)	•		•			•	•	•	0.932
	fgenesh4_pg.C_scaffold_29000089	carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC-6.3.5.5) (390 aa)	•					•	•		0.927
	eugene3.00030549	carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC-6.3.5.5) (429 aa)	•					•	•		0.921
	gw1.X.4384.1	carbamoyl-phosphate synthase (EC-6.3.4.16) (1081 aa)	•				•	•	•		0.914
	fgenesh4_pg.C_LG_IV000576	mannose-6-phosphate isomerase (EC-5.3.1.8) (440 aa)						•	•		0.910
	gw1.VIII.2574.1	glucose-6-phosphate isomerase (EC-5.3.1.9) (569 aa)						•	•		0.904

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	636
PLN02981	680	PLN02981, PLN02981, glucosamine:fructose-6-phospha	0.0
PTZ00394	670	PTZ00394, PTZ00394, glucosamine-fructose-6-phospha	0.0
COG0449	597	COG0449, GlmS, Glucosamine 6-phosphate synthetase,	0.0
PRK00331	604	PRK00331, PRK00331, glucosamine--fructose-6-phosph	0.0
TIGR01135	607	TIGR01135, glmS, glucosamine--fructose-6-phosphate	0.0
PTZ00295	640	PTZ00295, PTZ00295, glucosamine-fructose-6-phospha	1e-145
cd00714	215	cd00714, GFAT, Glutamine amidotransferases class-I	2e-86
cd05009	153	cd05009, SIS_GlmS_GlmD_2, SIS (Sugar ISomerase) do	6e-62
COG2222	340	COG2222, AgaS, Predicted phosphosugar isomerases [	2e-57
cd05008	126	cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) do	4e-56
cd00352	220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	5e-42
pfam00310	223	pfam00310, GATase_2, Glutamine amidotransferases c	1e-34
pfam01380	131	pfam01380, SIS, SIS domain	1e-32
pfam01380	131	pfam01380, SIS, SIS domain	5e-20
COG0034	470	COG0034, PurF, Glutamine phosphoribosylpyrophospha	1e-19
cd00715	252	cd00715, GPATase_N, Glutamine amidotransferases cl	2e-19
PRK11382	340	PRK11382, frlB, fructoselysine-6-P-deglycase; Prov	4e-15
TIGR01134	442	TIGR01134, purF, amidophosphoribosyltransferase	2e-14
PRK09123	479	PRK09123, PRK09123, amidophosphoribosyltransferase	2e-14
pfam13522	130	pfam13522, GATase_6, Glutamine amidotransferase do	3e-14
cd05710	120	cd05710, SIS_1, A subgroup of the SIS domain	4e-14
cd05013	139	cd05013, SIS_RpiR, RpiR-like protein	5e-14
PLN02440	479	PLN02440, PLN02440, amidophosphoribosyltransferase	5e-13
pfam13537	120	pfam13537, GATase_7, Glutamine amidotransferase do	4e-11
COG1737	281	COG1737, RpiR, Transcriptional regulators [Transcr	5e-11
cd01907	249	cd01907, GlxB, Glutamine amidotransferases class-I	8e-11
PRK05793	469	PRK05793, PRK05793, amidophosphoribosyltransferase	1e-10
COG0367	542	COG0367, AsnB, Asparagine synthase (glutamine-hydr	1e-09
COG0067	371	COG0067, GltB, Glutamate synthase domain 1 [Amino	1e-08
PRK08525	445	PRK08525, PRK08525, amidophosphoribosyltransferase	1e-08
PRK05441	299	PRK05441, murQ, N-acetylmuramic acid-6-phosphate e	2e-08
PRK06388	474	PRK06388, PRK06388, amidophosphoribosyltransferase	2e-08
cd01908	257	cd01908, YafJ, Glutamine amidotransferases class-I	9e-08
PRK07847	510	PRK07847, PRK07847, amidophosphoribosyltransferase	1e-07
PRK08341	442	PRK08341, PRK08341, amidophosphoribosyltransferase	2e-07
PRK07272	484	PRK07272, PRK07272, amidophosphoribosyltransferase	5e-07
PRK09246	501	PRK09246, PRK09246, amidophosphoribosyltransferase	6e-07
cd00712	220	cd00712, AsnB, Glutamine amidotransferases class-I	7e-07
cd04795	87	cd04795, SIS, SIS domain	8e-07
cd05007	257	cd05007, SIS_Etherase, N-acetylmuramic acid 6-phos	2e-06
COG2103	298	COG2103, COG2103, Predicted sugar phosphate isomer	3e-06
TIGR01536	466	TIGR01536, asn_synth_AEB, asparagine synthase (glu	5e-06
PRK07631	475	PRK07631, PRK07631, amidophosphoribosyltransferase	7e-06
cd05014	128	cd05014, SIS_Kpsf, KpsF-like protein	3e-05
PRK07349	500	PRK07349, PRK07349, amidophosphoribosyltransferase	5e-05
COG0121	252	COG0121, COG0121, Predicted glutamine amidotransfe	7e-05
TIGR00274	291	TIGR00274, TIGR00274, N-acetylmuramic acid 6-phosp	2e-04
PTZ00077	586	PTZ00077, PTZ00077, asparagine synthetase-like pro	2e-04
PRK11337	292	PRK11337, PRK11337, DNA-binding transcriptional re	2e-04
TIGR02815	372	TIGR02815, agaS_fam, putative sugar isomerase, Aga	3e-04
PRK06781	471	PRK06781, PRK06781, amidophosphoribosyltransferase	4e-04
TIGR03104	589	TIGR03104, trio_amidotrans, asparagine synthase fa	5e-04
PRK12570	296	PRK12570, PRK12570, N-acetylmuramic acid-6-phospha	0.002
pfam13230	272	pfam13230, GATase_4, Glutamine amidotransferases c	0.002
cd05017	119	cd05017, SIS_PGI_PMI_1, The members of this protei	0.002
PRK08674	337	PRK08674, PRK08674, bifunctional phosphoglucose/ph	0.003
PRK09431	554	PRK09431, asnB, asparagine synthetase B; Provision	0.004

>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate aminotransferase

 Score = 1199 bits (3103), Expect = 0.0
 Identities = 522/692 (75%), Positives = 562/692 (81%), Gaps = 68/692 (9%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           MCGIFAYLNY V RERR+IL+VLFNGLRRLEYRGYDSAGI ID+  S          +  
Sbjct: 1   MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPS----------LES 50

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQT 120
             PLVFR+EG IESLV+SVYEEVAET+LNL+  F  HAGIAHTRWATHG PAPRNSHPQ+
Sbjct: 51  SSPLVFREEGKIESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQS 110

Query: 121 SGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQP 180
           SG GNEFLVVHNG+ITNYEVLKETL+RHGFTFES+TDTEVIPKLAKFVFDK NEEEGD  
Sbjct: 111 SGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEEGD-- 168

Query: 181 VTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG-----AVSILKFD 235
           VTFSQVV+EVMR LEGAYALIFKS HYPNEL+ACKRGSPLLLGVK+      + ++   +
Sbjct: 169 VTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRGSPLLLGVKELPEEKNSSAVFTSE 228

Query: 236 NAKGRNGGT-----YARPAS-----VQRALSILEMEVEQINKGN---------------- 269
               +N         A  AS      +R L I + EV  +  G                 
Sbjct: 229 GFLTKNRDKPKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGVGIYKFENEKGRGGGG 288

Query: 270 -------------------------YEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSV 304
                                    Y+HYMQKEIHEQPESLTTTMRGRLIRGGS KAK V
Sbjct: 289 LSRPASVERALSTLEMEVEQIMKGNYDHYMQKEIHEQPESLTTTMRGRLIRGGSGKAKRV 348

Query: 305 LLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPI 364
           LLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELS +PVTME+ASDL+DRQ PI
Sbjct: 349 LLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMELASDLLDRQGPI 408

Query: 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIG 424
           YREDTAVFVSQSGETADTL+ALEYA ENGALCVGITNTVGSAI+R THCGVHINAGAEIG
Sbjct: 409 YREDTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHINAGAEIG 468

Query: 425 VASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLA 484
           VASTKAYTSQIV M MLALA+G D+IS+++RREAIIDGL DLPNKVREVLKLDQEMK LA
Sbjct: 469 VASTKAYTSQIVAMTMLALALGEDSISSRSRREAIIDGLFDLPNKVREVLKLDQEMKELA 528

Query: 485 KQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILV 544
           + LI EQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDE LPI+V
Sbjct: 529 ELLIDEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIV 588

Query: 545 IATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVIN 604
           IATRDACFSKQQSVIQQL ARKGRLIV+CSKGDA+S+ P G CRVIEVPQVEDCLQPVIN
Sbjct: 589 IATRDACFSKQQSVIQQLRARKGRLIVICSKGDASSVCPSGGCRVIEVPQVEDCLQPVIN 648

Query: 605 IVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
           IVPLQLLAYHLTVLRG+NVDQPRNLAKSVTTQ
Sbjct: 649 IVPLQLLAYHLTVLRGHNVDQPRNLAKSVTTQ 680

Length = 680

>gnl|CDD|173585 PTZ00394, PTZ00394, glucosamine-fructose-6-phosphate aminotransferase; Provisional

 Score =  665 bits (1716), Expect = 0.0
 Identities = 304/689 (44%), Positives = 420/689 (60%), Gaps = 72/689 (10%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           MCGIF Y N+ V R    IL VL +G++++EYRGYDSAG+ ID +         ++S   
Sbjct: 1   MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPT 60

Query: 61  CPPLVFRQEGNIESLVKSVY-EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQ 119
             P V R  GNI  L + V+ E VA T   ++ + S H GIAHTRWATHG    RN HPQ
Sbjct: 61  PRPCVVRSVGNISQLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQ 120

Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQ 179
            S  G EF +VHNG++TNY  LKE L   G+ F S+TDTEVI  L+++++ +        
Sbjct: 121 QSNNG-EFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTR------KG 173

Query: 180 PVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD----GAVS----- 230
              F+ + +EV R +EG+YAL+ KS ++P +L A ++GSPL++G++     G V      
Sbjct: 174 IHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKGSPLMVGIRRTDDRGCVMKLQTY 233

Query: 231 -----------------------------------------ILKFDNAKGRNGGTYARPA 249
                                                     L+F NA  R         
Sbjct: 234 DLTDLSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGALRFYNAAERQRSI----- 288

Query: 250 SVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGL 309
            V+R +  L+ + E ++KGNY H+M KEI+EQPES+ ++M GR+       + +V L G 
Sbjct: 289 -VKREVQHLDAKPEGLSKGNYPHFMLKEIYEQPESVISSMHGRI----DFSSGTVQLSGF 343

Query: 310 KDH-LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYRED 368
               ++ I  SRRI+FI CGTS N+ LA RP+ EEL  LP+++E ASD +DR+  I R+D
Sbjct: 344 TQQSIRAILTSRRILFIACGTSLNSCLAVRPLFEELVPLPISVENASDFLDRRPRIQRDD 403

Query: 369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST 428
              FVSQSGETADTL AL+   E GA+CVGITN VGS+I+R TH  +H+NAG E+GVAST
Sbjct: 404 VCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVEVGVAST 463

Query: 429 KAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQE-MKVLAKQL 487
           KAYTSQ+VV+ ++AL +  D++  Q RR  II GL +LP  + E LK+  + +K LA +L
Sbjct: 464 KAYTSQVVVLTLVALLLSSDSVRLQERRNEIIRGLAELPAAISECLKITHDPVKALAARL 523

Query: 488 IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIAT 547
               S+LV GRGY+ ATA+E ALKVKE++ +H+EGI +GE+KHGPLAL+DE  P+L + T
Sbjct: 524 KESSSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCT 583

Query: 548 RDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVP 607
            D  F   +S +QQ+ AR G ++V  ++ DA       +  ++ VP+  DCLQ V+N++P
Sbjct: 584 HDKHFGLSKSAVQQVKARGGAVVVFATEVDAE--LKAAASEIVLVPKTVDCLQCVVNVIP 641

Query: 608 LQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
            QLLAY++ +LRG NVD PRNLAKSVT Q
Sbjct: 642 FQLLAYYMALLRGNNVDCPRNLAKSVTVQ 670

Length = 670

>gnl|CDD|223526 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

 Score =  655 bits (1692), Expect = 0.0
 Identities = 257/652 (39%), Positives = 372/652 (57%), Gaps = 75/652 (11%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           MCGI  Y+ +      R  + +L  GL+RLEYRGYDSAGI +    S +           
Sbjct: 1   MCGIVGYIGF-----LREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLN----------- 44

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQT 120
               V +Q G I +L           EL  +E      GIAHTRWATHG P   N+HP +
Sbjct: 45  ----VRKQVGKISNL----------EELLNKEPLIGGVGIAHTRWATHGGPTRANAHPHS 90

Query: 121 SGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQP 180
            G   EF VVHNG+I N+  LKE L   G+ F+S+TDTEVI  L + ++D +  E     
Sbjct: 91  DG---EFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLE----- 142

Query: 181 VTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG-------AVSILK 233
                 V +V++ LEG+YAL+     +P+EL+A ++GSPL++GV +G         ++L 
Sbjct: 143 -----AVKKVLKRLEGSYALLCTHSDFPDELVAARKGSPLVIGVGEGENFLASDVSALLN 197

Query: 234 F----------DNAKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPE 283
           F          D AK    G      +V R + ++E ++    KG + H+M KEI+EQPE
Sbjct: 198 FTRRFVYLEEGDIAKLTTDGVSINDGNVLRDVPVIEWDLCAAEKGGFRHFMLKEIYEQPE 257

Query: 284 SLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEE 343
           +L  T++GRL               L      +R   RI+ + CGTSY+A L A+   E 
Sbjct: 258 ALRNTLQGRLD------ELVQNELDLDI----LREVDRIIIVACGTSYHAGLVAKYFFER 307

Query: 344 LSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTV 403
           L+ +PV +E AS+   R+  +      + +SQSGETADTL AL  A E GA  + ITN  
Sbjct: 308 LAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRLAKEQGAKTLAITNVP 367

Query: 404 GSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGD-TISTQARREAIIDG 462
           GS IAR++   + I AG EIGVASTKA+T+Q++ + +LAL +       ++    ++I  
Sbjct: 368 GSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRGTISEEEERSLIKE 427

Query: 463 LCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEG 522
           L  LPN + +VL  ++++K LAK+L   +     GRG  Y  ALEGALK+KE++ +H+EG
Sbjct: 428 LQKLPNHIPKVLAAEEKIKELAKRLADAKDFFFLGRGVLYPVALEGALKLKEISYIHAEG 487

Query: 523 ILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIF 582
             AGE+KHGP+AL+DEN P++ IA +   F K +S IQ++ AR G++IV+  +GD A   
Sbjct: 488 YAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGDVAE-- 545

Query: 583 PGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVT 634
                 +I +P+V++ L P++  +PLQLLAYH+ + +G +VD+PRNLAKSVT
Sbjct: 546 --DGDDLILLPEVDELLAPLLYTIPLQLLAYHIALAKGIDVDKPRNLAKSVT 595

Length = 597

>gnl|CDD|234729 PRK00331, PRK00331, glucosamine--fructose-6-phosphate aminotransferase; Reviewed

 Score =  642 bits (1660), Expect = 0.0
 Identities = 252/668 (37%), Positives = 369/668 (55%), Gaps = 100/668 (14%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           MCGI  Y+       +R   ++L  GL+RLEYRGYDSAGI +               ++ 
Sbjct: 1   MCGIVGYVG------QRNAAEILLEGLKRLEYRGYDSAGIAV---------------LDD 39

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQT 120
               V +  G + +L      ++ E  L          GI HTRWATHG+P  RN+HP T
Sbjct: 40  GGLEVRKAVGKVANLE----AKLEEEPL------PGTTGIGHTRWATHGKPTERNAHPHT 89

Query: 121 SGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQP 180
             +G    VVHNG+I NY  LKE L+  G  F+SETDTEVI  L     ++  +E GD  
Sbjct: 90  DCSG-RIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHL----IEEELKEGGD-- 142

Query: 181 VTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG------------- 227
               + V + ++ LEGAYAL    +  P+ ++A + GSPL++G+ +G             
Sbjct: 143 --LLEAVRKALKRLEGAYALAVIDKDEPDTIVAARNGSPLVIGLGEGENFLASDALALLP 200

Query: 228 -------------------AVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKG 268
                               V I  FD               V+R +  ++ +     KG
Sbjct: 201 YTRRVIYLEDGEIAVLTRDGVEIFDFDGNP------------VEREVYTVDWDASAAEKG 248

Query: 269 NYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCG 328
            Y H+M KEI+EQPE++  T+ GRL            LG  +   + +++  RI  + CG
Sbjct: 249 GYRHFMLKEIYEQPEAIRDTLEGRLD----------ELGEGELADEDLKKIDRIYIVACG 298

Query: 329 TSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEY 388
           TSY+A L A+ ++E L+ +PV +EIAS+   R   +  +   + +SQSGETADTL AL  
Sbjct: 299 TSYHAGLVAKYLIESLAGIPVEVEIASEFRYRDPVLSPKTLVIAISQSGETADTLAALRL 358

Query: 389 ASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGD 448
           A E GA  + I N  GS IAR++   ++ +AG EIGVASTKA+T+Q+ V+ +LALA+   
Sbjct: 359 AKELGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKA 418

Query: 449 --TISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATAL 506
             T+S       ++  L +LP  + +VL L ++++ LA+     ++ L  GRG +Y  AL
Sbjct: 419 RGTLS-AEEEADLVHELRELPALIEQVLDLKEQIEELAEDFADARNALFLGRGVDYPVAL 477

Query: 507 EGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARK 566
           EGALK+KE++ +H+EG  AGE+KHGP+AL+DE +P++ IA  D  + K +S IQ++ AR 
Sbjct: 478 EGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEKTKSNIQEVKARG 537

Query: 567 GRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQP 626
            R+IV+  +GD  +        VIEVP+V + L P++ +VPLQLLAYH+ + RG +VD+P
Sbjct: 538 ARVIVIADEGDEVAEEAD---DVIEVPEVHELLAPLLYVVPLQLLAYHVALARGTDVDKP 594

Query: 627 RNLAKSVT 634
           RNLAKSVT
Sbjct: 595 RNLAKSVT 602

Length = 604

>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

 Score =  568 bits (1465), Expect = 0.0
 Identities = 247/666 (37%), Positives = 359/666 (53%), Gaps = 94/666 (14%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGI  Y+       +R  + +L  GL+RLEYRGYDSAGI + D                 
Sbjct: 1   CGIVGYIG------QRDAVPILLEGLKRLEYRGYDSAGIAVVDEGKLF------------ 42

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
              V +  G ++ L      ++ E  L       +  GI HTRWATHG+P   N+HP T 
Sbjct: 43  ---VRKAVGKVQELA----NKLGEKPL----PGGV--GIGHTRWATHGKPTEENAHPHTD 89

Query: 122 GAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV 181
             G    VVHNG+I NY  L+E L   G  F S+TDTEVI  L         EE   +  
Sbjct: 90  EGG-RIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLI--------EEYLREGG 140

Query: 182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG-------------- 227
              + V + ++ L GAYAL      +P  L+A + GSPL++G+ DG              
Sbjct: 141 DLLEAVQKALKQLRGAYALAVLHADHPETLVAARSGSPLIVGLGDGENFVASDVTALLPV 200

Query: 228 ------------------AVSILKFDNAKGRNGGTYARPASVQRALSILEMEVEQINKGN 269
                              V I  F+ A             V R +  ++ +++   KG 
Sbjct: 201 TRRVIYLEDGDIAILTRDGVRIYNFEGAP------------VSREVRTIDWDLDAAEKGG 248

Query: 270 YEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGT 329
           Y H+M KEI+EQP +L  T+ GR+   G      +   G ++ LK + R   I  + CGT
Sbjct: 249 YRHFMLKEIYEQPRALRDTLEGRISEAG----VVLEELGAEELLKNVDR---IQIVACGT 301

Query: 330 SYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYA 389
           SY+A L A+ ++E L+ +PV +EIAS+   R+  + ++   + +SQSGETADTL AL  A
Sbjct: 302 SYHAGLVAKYLIERLAGIPVEVEIASEFRYRKPVVDKDTLVIAISQSGETADTLAALRLA 361

Query: 390 SENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDT 449
            E GA  +GI N  GS + R++   ++  AG EIGVASTKA+T+Q+ V+ +LAL +    
Sbjct: 362 KELGAKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKAR 421

Query: 450 -ISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEG 508
              +      ++DGL  LP  V +VLKL++ +  LA++   + + L  GRG  Y  ALEG
Sbjct: 422 GTLSAEEEAELVDGLRRLPALVEQVLKLEESIAELAERYADKHNFLFLGRGLGYPIALEG 481

Query: 509 ALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGR 568
           ALK+KE++ +H+EG  AGE+KHGP+AL+DE LP++ IA +D+ F K +S ++++ AR  R
Sbjct: 482 ALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSNVEEVKARGAR 541

Query: 569 LIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRN 628
           +IV   + D           VI++P+VE+ L P++  VPLQLLAYH+ + +G +VD+PRN
Sbjct: 542 VIVFADEDDEFLESVADD--VIKLPEVEELLAPIVYTVPLQLLAYHIALAKGTDVDKPRN 599

Query: 629 LAKSVT 634
           LAKSVT
Sbjct: 600 LAKSVT 605

The member from Methanococcus jannaschii contains an intein [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Central intermediary metabolism, Amino sugars]. Length = 607

>gnl|CDD|240349 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate aminotransferase; Provisional

 Score =  435 bits (1120), Expect = e-145
 Identities = 225/670 (33%), Positives = 335/670 (50%), Gaps = 89/670 (13%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGIC-IDDSSS--PSPLPSPSSS 57
            CGI  YL    N +     ++L  G+  L+ RGYDS GI  I        +   S  ++
Sbjct: 24  CCGIVGYLG---NEDAS---KILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTT 77

Query: 58  VNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSH 117
            +           +IE L K    +  +             GIAHTRWATHG     N+H
Sbjct: 78  SD-----------SIEIL-KEKLLDSHKNS---------TIGIAHTRWATHGGKTDENAH 116

Query: 118 PQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEG 177
           P          +VHNG I NY  LK  LI  G  F SETD+EVI  L           E 
Sbjct: 117 PHCDYKKR-IALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGL--------EL 167

Query: 178 DQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSI------ 231
           DQ   F + V   +  L+G + L    +  P+ LI  + GSPLL+G+ D ++ +      
Sbjct: 168 DQGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNGSPLLVGIGDDSIYVASEPSA 227

Query: 232 -LKFDN--------------AKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQK 276
             K+ N               +  N          QR +  +  EV + +   Y H+  K
Sbjct: 228 FAKYTNEYISLKDGEIAELSLENVN------DLYTQRRVEKIPEEVIEKSPEPYPHWTLK 281

Query: 277 EIHEQPESLTTTM--RGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAA 334
           EI EQP +L+  +   GRL    +     V LGGL  +L+ +   + ++ +GCGTSY AA
Sbjct: 282 EIFEQPIALSRALNNGGRLSGYNNR----VKLGGLDQYLEELLNIKNLILVGCGTSYYAA 337

Query: 335 LAARPILEELS--DLPVTMEIASDL-VDRQAPIYRED-TAVFVSQSGETADTLQALEYAS 390
           L A  I+++L   +    ++ AS+L + R   +  ED   +F+SQSGET D ++AL  A 
Sbjct: 338 LFAASIMQKLKCFNTVQVID-ASELTLYR---LPDEDAGVIFISQSGETLDVVRALNLAD 393

Query: 391 ENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGG--D 448
           E     + + NTVGS IAR T CGV++NAG E+ VASTKA+TSQ+ V++++AL      +
Sbjct: 394 ELNLPKISVVNTVGSLIARSTDCGVYLNAGREVAVASTKAFTSQVTVLSLIALWFAQNKE 453

Query: 449 TISTQARREAIIDGLCDLPNKVREVLKLDQEM-KVLAKQLIAEQSLLVFGRGYNYATALE 507
              +  +  ++I+ L  LP  +   LK  +E  K +A++L   +S+ + G+G  Y  ALE
Sbjct: 454 YSCSNYKCSSLINSLHRLPTYIGMTLKSCEEQCKRIAEKLKNAKSMFILGKGLGYPIALE 513

Query: 508 GALKVKEVALMHSEGILAGEMKHGPLALVDE--NLPILVIATRDACFSKQQSVIQQLHAR 565
           GALK+KE+  +H+EG   G +KHGP AL+D+  N P+++I   D       +  +Q+ AR
Sbjct: 514 GALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTPVILIILDDEHKELMINAAEQVKAR 573

Query: 566 KGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQ 625
              +IV+    D    F   +  +I +P     L  ++ ++PLQLLAY + +LRG N D+
Sbjct: 574 GAYIIVITDDEDLVKDF---ADEIILIPSN-GPLTALLAVIPLQLLAYEIAILRGINPDK 629

Query: 626 PRNLAKSVTT 635
           PR LAK+VT 
Sbjct: 630 PRGLAKTVTV 639

Length = 640

>gnl|CDD|238366 cd00714, GFAT, Glutamine amidotransferases class-II (Gn-AT)_GFAT-type

 Score =  268 bits (688), Expect = 2e-86
 Identities = 87/230 (37%), Positives = 117/230 (50%), Gaps = 40/230 (17%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGI  Y+        R  + +L  GL+RLEYRGYDSAGI +    S              
Sbjct: 1   CGIVGYIGK------REAVDILLEGLKRLEYRGYDSAGIAVIGDGSL------------- 41

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
              V +  G + +L + + E+              H GI HTRWATHGEP   N+HP  S
Sbjct: 42  --EVVKAVGKVANLEEKLAEKPLSG----------HVGIGHTRWATHGEPTDVNAHPHRS 89

Query: 122 GAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV 181
               E  VVHNG+I NY  LKE L   G+ FESETDTEVI  L ++ +D           
Sbjct: 90  C-DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGL-------- 140

Query: 182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSI 231
              + V + ++ LEGAYAL   S+  P+E++A + GSPL++G+ DG   +
Sbjct: 141 DLLEAVKKALKRLEGAYALAVISKDEPDEIVAARNGSPLVIGIGDGENFV 190

This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin. Length = 215

>gnl|CDD|240142 cd05009, SIS_GlmS_GlmD_2, SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

 Score =  202 bits (515), Expect = 6e-62
 Identities = 78/157 (49%), Positives = 106/157 (67%), Gaps = 4/157 (2%)

Query: 478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVD 537
           +++K LA++L   +S  V GRG NY TALEGALK+KE + +H+E   AGE KHGP+ALVD
Sbjct: 1   EDIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVD 60

Query: 538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED 597
           E  P++ +A  D    K +S+I+++ AR  ++IV+   GDA       +  VI VP   +
Sbjct: 61  EGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDGDAKD----LADVVIRVPATVE 116

Query: 598 CLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVT 634
            L P++ IVPLQLLAYHL V RG + D+PRNLAKSVT
Sbjct: 117 ELSPLLYIVPLQLLAYHLAVARGIDPDKPRNLAKSVT 153

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) contains two SIS domains and catalyzes the deamination and isomerization of glucosamine-6-phosphate into fructose-6-phosphate with the release of ammonia; in presence of high ammonia concentration, GlmD can catalyze the reverse reaction. Length = 153

>gnl|CDD|225132 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]

 Score =  196 bits (501), Expect = 2e-57
 Identities = 115/367 (31%), Positives = 177/367 (48%), Gaps = 30/367 (8%)

Query: 271 EHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTS 330
              M +EI +QP  +       L    +  A+      L D L+  R   RI+F+GCG+S
Sbjct: 2   STLMLREIEQQPAVVARL----LEANRAVLAE------LADFLR-KRGIDRILFVGCGSS 50

Query: 331 YNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF-VSQSGETADTLQALEYA 389
            +AA  A+ +LE    L V    AS+ +   A    ED+ V   SQSG T +++ A E A
Sbjct: 51  LHAATPAKYLLERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELA 110

Query: 390 SENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDT 449
            E GAL + +TN   S +AR     +   AG E  VA+TK++T+ +  +A+LAL    D 
Sbjct: 111 KEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAATKSFTASL--LALLALLAEYDG 168

Query: 450 ISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGA 509
            +           L DLP +  +   L+++ +  A++   E  +   G G  Y  A E A
Sbjct: 169 DAQLLAA------LPDLPLEAAK--ALEEDAQEFAEEYADEDRIYTLGSGPLYGAAYEAA 220

Query: 510 LKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRL 569
           LK+KE+  +HSE I +GE +HGP  LV+E  P+L+  + D      +  ++ L     ++
Sbjct: 221 LKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKNYGAKV 280

Query: 570 IVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNL 629
           +V+ +K  A         RV       D   P++++V  Q LAY L V RG+N D PR  
Sbjct: 281 LVIDAKDAA---LDLIDQRVR-----HDLAPPLLSLVVAQRLAYALAVARGHNPDTPRYY 332

Query: 630 AKSVTTQ 636
                T+
Sbjct: 333 GLVKVTR 339

Length = 340

>gnl|CDD|240141 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

 Score =  185 bits (473), Expect = 4e-56
 Identities = 62/126 (49%), Positives = 88/126 (69%)

Query: 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETA 380
           RI+ +GCGTSY+AAL A+ +LE L+ +PV +E AS+   R+  +  +   + +SQSGETA
Sbjct: 1   RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETA 60

Query: 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAM 440
           DTL AL  A E GA  V ITN VGS +AR+    +++ AG EI VA+TKA+TSQ++ + +
Sbjct: 61  DTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLL 120

Query: 441 LALAIG 446
           LALA+ 
Sbjct: 121 LALALA 126

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) contains two SIS domains and catalyzes the deamination and isomerization of glucosamine-6-phosphate into fructose-6-phosphate with the release of ammonia; in presence of high ammonia concentration, GlmD can catalyze the reverse reaction. Length = 126

>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)

 Score =  151 bits (382), Expect = 5e-42
 Identities = 66/234 (28%), Positives = 93/234 (39%), Gaps = 42/234 (17%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGIF  +          +L  L  GL  LE+RG D AGI + D                 
Sbjct: 1   CGIFGIVGADGAASLLLLL--LLRGLAALEHRGPDGAGIAVYD----------------- 41

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
                   G+   + K            L+E       + H R AT+G P+  N+ P  S
Sbjct: 42  --------GDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRS 93

Query: 122 GAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV 181
             G    +VHNG I NY  L+E L   G+ FE E+D+EVI  L         E  G +  
Sbjct: 94  EDGR-IALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLL--------ERLGREGG 144

Query: 182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGV-KDGAVSI 231
            F + V + ++ L+G +A        P+ L A +      PL  G+ KDG +  
Sbjct: 145 LF-EAVEDALKRLDGPFAFALWDGK-PDRLFAARDRFGIRPLYYGITKDGGLVF 196

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220

>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II

 Score =  130 bits (329), Expect = 1e-34
 Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 41/243 (16%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGY------DSAGICIDDSSSPSPLPSPS 55
           CGI  ++ +   +    +++     L RLE+RG       D AGI             P 
Sbjct: 1   CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQI---------PD 51

Query: 56  SSVNGCPPLVFRQEGNIE-SLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPR 114
                    +F      E S+V   Y          +E F     I HTR++T+G P+  
Sbjct: 52  GFGAPSERRLFVIRKRGEKSIVAEFY--------LQDERFKSALAIVHTRFSTNGFPSWE 103

Query: 115 NSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANE 174
           N+HP        +++ HNG I     L+  +      F S +D+E    L + +      
Sbjct: 104 NAHPFRR---EGWVLAHNGEINTLRGLRNWMRAREGVFNSGSDSEAFDNLLELLVRAGRS 160

Query: 175 EEGDQPV-TFSQVVVEVMRHLEGAYALIFKSQHY------PNELIACKRGSPLLLGV-KD 226
            + D     F + +  +M   +G  AL+F    Y       N L       P   G+ +D
Sbjct: 161 PDMDPEERAFYEYLAGLMEPWDGPAALVFTDGRYVGATLDRNGLR------PARYGITED 214

Query: 227 GAV 229
           G +
Sbjct: 215 GLI 217

Length = 223

>gnl|CDD|216466 pfam01380, SIS, SIS domain

 Score =  122 bits (307), Expect = 1e-32
 Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQ-APIYREDTAVFVS 374
           + +++RI  IG GTSY AAL     LEE+  + V +E AS+      A +  +D  + +S
Sbjct: 2   LAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAIS 61

Query: 375 QSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQ 434
           QSGET D L+A +     GA  + IT++ GS +AR+    ++I AG E GVASTK+ T Q
Sbjct: 62  QSGETRDLLEAAKLLKARGAKIIAITDSKGSPLAREADHVLYIIAGPEAGVASTKSLTLQ 121

Query: 435 IVVMAMLALA 444
           + ++  LA+A
Sbjct: 122 LALLDALAIA 131

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway. Length = 131

>gnl|CDD|216466 pfam01380, SIS, SIS domain

 Score = 86.2 bits (214), Expect = 5e-20
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 487 LIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIA 546
           L   + + V G G +YA ALE ALK++E+  +  E   A E +HGPLALVD +  ++ I+
Sbjct: 2   LAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAIS 61

Query: 547 TRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIV 606
                    ++  + L AR  ++I +       S     +  V+ +    +        +
Sbjct: 62  QSGETRDLLEAA-KLLKARGAKIIAITDSKG--SPLAREADHVLYIIAGPEAGVASTKSL 118

Query: 607 PLQLLAYHLTVLR 619
            LQL       + 
Sbjct: 119 TLQLALLDALAIA 131

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway. Length = 131

>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

 Score = 91.9 bits (229), Expect = 1e-19
 Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 45/233 (19%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           MCG+F    +  N       Q+ + GL  L++RG ++AGI                  +G
Sbjct: 4   MCGVFGIWGHKDNN----AAQLTYYGLYALQHRGQEAAGIA---------------VADG 44

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHP-Q 119
                 +  G    LV  V+ E      +L      + GI H R++T G  +  N+ P  
Sbjct: 45  KRFHTHKGMG----LVSDVFNER-----DLLRKLQGNVGIGHVRYSTAGSSSIENAQPFY 95

Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQ 179
            +  G    + HNG + N E L+  L   G  F + +D+EV+  L     D+ +  E   
Sbjct: 96  VNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEA-- 153

Query: 180 PVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACK--RG-SPLLLG-VKDGA 228
                  V EV+R ++GAYAL+       + LIA +   G  PL+LG + DG 
Sbjct: 154 -------VKEVLRRVKGAYALVALI---KDGLIAVRDPNGIRPLVLGKLGDGF 196

Length = 470

>gnl|CDD|238367 cd00715, GPATase_N, Glutamine amidotransferases class-II (GN-AT)_GPAT- type

 Score = 87.9 bits (219), Expect = 2e-19
 Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 57/235 (24%)

Query: 2   CGIFA-YLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           CG+F  Y      R       + + GL  L++RG +SAGI   D                
Sbjct: 1   CGVFGIYGAEDAAR-------LTYLGLYALQHRGQESAGIATSDGKR------------- 40

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHP-- 118
                F     +  LV  V++   E +L        +  I H R++T G  +  N+ P  
Sbjct: 41  -----FHTHKGM-GLVSDVFD---EEKLRRLPG---NIAIGHVRYSTAGSSSLENAQPFV 88

Query: 119 -QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEG 177
             +   G    + HNG + N + L+E L   G  F++ +D+EVI  L      K +  E 
Sbjct: 89  VNSPLGG--IALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEA 146

Query: 178 DQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACK-----RGSPLLLGVKDG 227
                    +++ +  ++GAY+L+  +    + LIA +     R  PL+LG  +G
Sbjct: 147 ---------IIDALERVKGAYSLVIMT---ADGLIAVRDPHGIR--PLVLGKLEG 187

This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer. Length = 252

>gnl|CDD|183111 PRK11382, frlB, fructoselysine-6-P-deglycase; Provisional

 Score = 77.0 bits (189), Expect = 4e-15
 Identities = 80/315 (25%), Positives = 131/315 (41%), Gaps = 36/315 (11%)

Query: 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYRED---TAVFVSQSG 377
           RI F+ CG+  NAA  A+ + +  SDL V      +  D     YR D     + VS  G
Sbjct: 46  RIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTP--YRLDDRCAVIGVSDYG 103

Query: 378 ETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVV 437
           +T + ++ALE     GAL    T    S I       +   A     +     Y+   VV
Sbjct: 104 KTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYS---VV 160

Query: 438 MAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQL--IAEQSLLV 495
           + M+        ++  A    I + L  LPN +  +++  +E     +QL  +A Q  ++
Sbjct: 161 LEMIT------RLAPNAEIGKIKNDLKQLPNALGHLVRTWEEK---GRQLGELASQWPMI 211

Query: 496 FGRGYNYATAL---EGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
           +         L   EG + + E    H   I +GE +HGPL +V+  +P L +   D   
Sbjct: 212 YTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESR 271

Query: 553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLA 612
              +  I  +  R   +IV+    D A I  G          +   L P +  VP++ L 
Sbjct: 272 HTTERAINFVKQRTDNVIVI----DYAEISQG----------LHPWLAPFLMFVPMEWLC 317

Query: 613 YHLTVLRGYNVDQPR 627
           Y+L++ + +N D+ R
Sbjct: 318 YYLSIYKDHNPDERR 332

Length = 340

>gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 44/228 (19%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CG+      G+  +      + + GL  L++RG ++AGI + D +               
Sbjct: 1   CGVV-----GIYSQEEDAASLTYYGLYALQHRGQEAAGIAVSDGNK-------------- 41

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
                R       LV  V++E       L+     + GI H R++T G  +  N+ P   
Sbjct: 42  ----IRTHKGN-GLVSDVFDE--RHLERLKG----NVGIGHVRYSTAGSSSLSNAQPFVV 90

Query: 122 GAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV 181
            +     + HNG + N E L+E L   G  F + +D+EV+  L      +   EE D   
Sbjct: 91  NSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHL----LARERLEEDD--- 143

Query: 182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACK--RG-SPLLLGVKD 226
              + +  V++ + GAYAL+         LIA +   G  PL+LG + 
Sbjct: 144 -LFEAIARVLKRVRGAYALVIMIGD---GLIAVRDPHGIRPLVLGKRG 187

Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 442

>gnl|CDD|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional

 Score = 75.3 bits (186), Expect = 2e-14
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 25/140 (17%)

Query: 97  HAGIAHTRWATHGEPAPRNSHP---QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFE 153
           +  I H R++T GE   RN  P   +    G    + HNG +TN   L+  LIR G  F+
Sbjct: 87  NRAIGHVRYSTTGETILRNVQPLFAELEFGG--LAIAHNGNLTNALTLRRELIRRGAIFQ 144

Query: 154 SETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIA 213
           S +DTEVI  L       A   +     +F    ++ +R +EGAY+L+  +     +LI 
Sbjct: 145 STSDTEVILHLI------ARSRKA----SFLDRFIDALRQVEGAYSLVALT---NTKLIG 191

Query: 214 CK-----RGSPLLLGVKDGA 228
            +     R  PL+LG  DG+
Sbjct: 192 ARDPLGIR--PLVLGELDGS 209

Length = 479

>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 20/103 (19%)

Query: 97  HAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESET 156
              + H R A           P  S  G   ++VHNG I N+  L+E L   G  F S +
Sbjct: 11  GIALGHVRLAIVDLSEAGA-QPMLSADGR-LVLVHNGEIYNFGELREELPAKGHAFRSRS 68

Query: 157 DTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYA 199
           D+EV+  L         EE G+          + +  L G +A
Sbjct: 69  DSEVLLALY--------EEWGE----------DALERLRGMFA 93

This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes, such as asparagine synthetase and glutamine--fructose-6-phosphate transaminase. Length = 130

>gnl|CDD|240214 cd05710, SIS_1, A subgroup of the SIS domain

 Score = 68.8 bits (169), Expect = 4e-14
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDT-AVFVSQSGET 379
            + F+GCG S      A+  L++ S LPV +  A++ +        E +  +  S SG T
Sbjct: 1   NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNT 60

Query: 380 ADTLQALEYASENGALCVGITNTVGSAIARKTH 412
            +T+ A ++A E GA  +G+T+   S +A+   
Sbjct: 61  KETVAAAKFAKEKGATVIGLTDDEDSPLAKLAD 93

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Length = 120

>gnl|CDD|240144 cd05013, SIS_RpiR, RpiR-like protein

 Score = 69.2 bits (170), Expect = 5e-14
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)

Query: 314 KTIRRSRRIVFIGCGTSYNAA-------LAARPILEELSDLPVTMEIASDLVDRQAPIYR 366
             + ++RRI   G G+S   A       L     +  LSD  + +  A++L         
Sbjct: 8   DLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTP------- 60

Query: 367 EDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVA 426
            D  + +S SGET +T++A E A E GA  + IT++  S +A+     + +   +E G  
Sbjct: 61  GDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLAD--IVLLVSSEEGDF 118

Query: 427 STKAYTSQIVVMAML-ALAIG 446
            + A++S+I  +A++ AL + 
Sbjct: 119 RSSAFSSRIAQLALIDALFLA 139

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate. Length = 139

>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase

 Score = 71.2 bits (175), Expect = 5e-13
 Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 59/257 (22%)

Query: 1   MCGIFA-YLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVN 59
            CG+   + +   +R         + GL  L++RG + AGI    +   + L S +   N
Sbjct: 1   ECGVVGIFGDPEASRL-------CYLGLHALQHRGQEGAGIV---TVDGNRLQSITG--N 48

Query: 60  GCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQ 119
           G              LV  V++E    +L           I H R++T G  + +N  P 
Sbjct: 49  G--------------LVSDVFDESKLDQL------PGDIAIGHVRYSTAGASSLKNVQPF 88

Query: 120 TSGAGNEF---LVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEE 176
              A   F    V HNG + NYE L+  L  +G  F + +DTEV+  L      KA    
Sbjct: 89  V--ANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVL--LHLIAISKAR--- 141

Query: 177 GDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACK-----RGSPLLLGV-KDGAVS 230
                 F   +V+    L+GAY+++F ++   ++L+A +     R  PL++G   +GAV 
Sbjct: 142 -----PFFSRIVDACEKLKGAYSMVFLTE---DKLVAVRDPHGFR--PLVMGRRSNGAVV 191

Query: 231 ILKFDNAKGRNGGTYAR 247
                 A    G TY R
Sbjct: 192 FASETCALDLIGATYER 208

Length = 479

>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 21/100 (21%)

Query: 102 HTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI 161
           H R +         + P  S  G  +++V NG I NY  L+  L   G+ F + +DTEVI
Sbjct: 1   HRRLSIDDSEG--GAQPMVSEDGR-YVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVI 57

Query: 162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALI 201
             L         EE G           + +  L G +A  
Sbjct: 58  LHLY--------EEWG----------EDCLDRLNGMFAFA 79

This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes such as asparagine synthetase and glutamine-fructose-6-phosphate transaminase. Length = 120

>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription]

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 23/162 (14%)

Query: 316 IRRSRRIVFIGCGTSYNAALAARPILEEL-------SDLPVTMEIASDLVDRQAPIYRED 368
           + ++RRI F G G+S   A      L  +       SD    +   + L          D
Sbjct: 127 LAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALL-------TPGD 179

Query: 369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST 428
             + +S SG T + ++A E A E GA  + IT++  S +A+     + +    E      
Sbjct: 180 VVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEE--SFFR 237

Query: 429 KAYTSQIVVMA-------MLALAIGGDTISTQARREAIIDGL 463
              +S+I  +A        +A   G   +    R +A++D L
Sbjct: 238 SPISSRIAQLALIDALITAVAQRRGEAALKRLKRIKALLDSL 279

Length = 281

>gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 32/170 (18%)

Query: 81  EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEV 140
           E++A    +LEE +  +  IAHTR  T+       +HP + G   +  VVHNG I+NY  
Sbjct: 64  EDIAR-RYDLEE-YKGYHWIAHTRQPTNSAVWWYGAHPFSIG---DIAVVHNGEISNYGS 118

Query: 141 LKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRH------- 193
            +E L R G+ FE+ETDTEVI   A ++       +G  P+ + + ++ +          
Sbjct: 119 NREYLERFGYKFETETDTEVI---AYYLDLLLR--KGGLPLEYYKHIIRMPEEERELLLA 173

Query: 194 ---------LEGAYALIFKSQHYPNELIAC---KRGSPLLLGVKDGAVSI 231
                    L+G + +I      P+  I      +  P ++   D  V+I
Sbjct: 174 LRLTYRLADLDGPFTIIVG---TPDGFIVIRDRIKLRPAVVAETDDYVAI 220

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. Length = 249

>gnl|CDD|235611 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 56/236 (23%)

Query: 2   CGIF-AYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           CG+F  +           +  + + GL  L++RG +SAGI + D                
Sbjct: 15  CGVFGVFSK-----NNIDVASLTYYGLYALQHRGQESAGIAVSDGEKIK----------- 58

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQT 120
               V +  G    LV  V+ +         +    ++ I H R++T G     N+ P  
Sbjct: 59  ----VHKGMG----LVSEVFSK------EKLKGLKGNSAIGHVRYSTTGASDLDNAQPLV 104

Query: 121 SGAGNEFL-VVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKL----AKFVFDKANEE 175
           +      + + HNG + N +V++E L   G  F++  D+EVI  L    AK   +KA   
Sbjct: 105 ANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKA--- 161

Query: 176 EGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGS---PLLLGVKDGA 228
                      +V+ ++ ++G+YAL+  ++   ++LI  +      PL LG     
Sbjct: 162 -----------LVDAIQAIKGSYALVILTE---DKLIGVRDPHGIRPLCLGKLGDD 203

Length = 469

>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 65/182 (35%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           MCGI   LN+    + + I++ +    + L +RG D +G+ I                  
Sbjct: 1   MCGIAGILNFKNLIDAKSIIEEM---TKLLRHRGPDDSGVWISL---------------- 41

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWAT---HGEPAPRNSH 117
                                               +A + H R +     G   P    
Sbjct: 42  ------------------------------------NALLGHRRLSIVDLSGGRQPM--- 62

Query: 118 PQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKL-AKFVFDKANEEE 176
                 G ++ +V+NG I N E L++ L   G+ F + +DTEVI  L  ++  D      
Sbjct: 63  ---IKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEWGEDCVEHLN 119

Query: 177 GD 178
           G 
Sbjct: 120 GM 121

Length = 542

>gnl|CDD|223145 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport and metabolism]

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 10/86 (11%)

Query: 81  EEVAETELNLE-ESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEF-LVVHNGVITNY 138
           E+VAE  L+L+ E +     + HTR++T+  P+   +HP        F L+VHNG I  Y
Sbjct: 186 EDVAEFYLDLDDERYKSAIALVHTRFSTNTFPSWPLAHP--------FRLLVHNGEINTY 237

Query: 139 EVLKETLIRHGFTFESETDTEVIPKL 164
              +  L   G+ FES TD EV+ KL
Sbjct: 238 GGNRNWLEARGYKFESPTDGEVLAKL 263

Length = 371

>gnl|CDD|181456 PRK08525, PRK08525, amidophosphoribosyltransferase; Provisional

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 31/126 (24%), Positives = 63/126 (50%), Gaps = 16/126 (12%)

Query: 86  TELNLEESFSIHAG---IAHTRWATHGEPAPRNSHPQTSGAG-NEFLVVHNGVITNYEVL 141
           T++  E++     G   I H R++T G  +  ++ P  +     E  +VHNG + N + +
Sbjct: 52  TQVFNEDNLKTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEV 111

Query: 142 KETLIRHGFTFESETDTE-VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYAL 200
           +  LI+ G  F++  DTE +I  +A+      +++E  +       ++E ++ + GAY L
Sbjct: 112 RSRLIQDGAIFQTNMDTENLIHLIAR------SKKESLKD-----RIIEALKKIIGAYCL 160

Query: 201 IFKSQH 206
           +  S+ 
Sbjct: 161 VLLSRS 166

Length = 445

>gnl|CDD|235467 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 354 ASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHC 413
           A+DL      +  +D  V ++ SG T   + ALEYA E GAL +GI+   GS ++++   
Sbjct: 121 AADLKAIN--LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADI 178

Query: 414 GVHINAGAEIGVAST--KAYTSQIVVMAML 441
            + +  G E+   ST  KA T+Q +V+ M+
Sbjct: 179 AIEVVVGPEVLTGSTRMKAGTAQKLVLNMI 208

Length = 299

>gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 40/177 (22%)

Query: 26  GLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAE 85
            LR L++RG +SAG+ + D               G    + +  G    LV  V+     
Sbjct: 38  ALRTLQHRGQESAGMAVFD---------------GRKIHLKKGMG----LVTDVFN---- 74

Query: 86  TELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFL-VVHNGVITNYEVLKET 144
                 +      G+ HTR++T G     N+ P    +   ++ + HNG I N + L+E 
Sbjct: 75  ---PATDPIKGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREE 131

Query: 145 LIRHGFTFESETDTEVIPKLAKFV--FDKANEEEGDQPVTFSQVVVEVMRHLEGAYA 199
           + + G+ F+S++DTEV+  LA+      K   +EG     F +     M  L GAYA
Sbjct: 132 MKKEGYIFQSDSDTEVM--LAELSRNISKYGLKEG-----FER----SMERLRGAYA 177

Length = 474

>gnl|CDD|238889 cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 38/172 (22%), Positives = 59/172 (34%), Gaps = 24/172 (13%)

Query: 57  SVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNS 116
              G  P  +R      S              +L         +AH R AT G  +  N 
Sbjct: 50  EGKGGRPFRYRSPLPAWS---------DINLESLARPIKSPLVLAHVRAATVGPVSLENC 100

Query: 117 HPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTF-ESETDTEVIPKLAKFVFDKANEE 175
           HP T G    +L  HNG +  + +L+  L+R         TD+E+       +  +  E 
Sbjct: 101 HPFTRG---RWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELA---FALLLSRLLER 154

Query: 176 EGDQPVTFSQVVVEVMRHLE-----GAYALIFKSQHYPNELIACKRGSPLLL 222
           +   P      +++ +R L      G   L+     Y   LIA +  S   L
Sbjct: 155 DPLDPAELLDAILQTLRELAALAPPGRLNLLLSDGEY---LIATRYASAPSL 203

YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. Length = 257

>gnl|CDD|236113 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 41/188 (21%)

Query: 26  GLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAE 85
           GL  L++RG ++AGI + D S                 LVF+  G    LV  V++E   
Sbjct: 43  GLYALQHRGQEAAGIAVSDGSQ---------------ILVFKDLG----LVSQVFDEQT- 82

Query: 86  TELNLEESFSIHAGIAHTRWATHGEPAPRNSHP--QTSGAGNEFLVVHNGVITNY----- 138
             L    S   H  I H R++T G     N+ P  + + AG    + HNG + N      
Sbjct: 83  --LA---SLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAA 137

Query: 139 EVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAY 198
                 LIR      + TDT+++  L            G    T  Q  +E++  + GA+
Sbjct: 138 RARDRGLIRGRDPAGATTDTDLVTALL---------AHGAADSTLEQAALELLPTVRGAF 188

Query: 199 ALIFKSQH 206
            L+F  +H
Sbjct: 189 CLVFMDEH 196

Length = 510

>gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 59/232 (25%), Positives = 88/232 (37%), Gaps = 54/232 (23%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGIFA  +    ++  Y        L  L++RG + AGI +      +         +G 
Sbjct: 5   CGIFAAYSENAPKKAYY-------ALIALQHRGQEGAGISVWRHRIRT------VKGHGL 51

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHG---EPAPRNSHP 118
              VF+  G   S +KS          NL         I H R++T G   E  P     
Sbjct: 52  VSEVFK--GGSLSRLKS----------NL--------AIGHVRYSTSGSLSEVQPL---- 87

Query: 119 QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGD 178
           +    G +  + HNG +TN+  L+      G  F S  DTE+I       F     E GD
Sbjct: 88  EVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELI----GISFLWHYSETGD 143

Query: 179 QPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKDG 227
           +     +V  EV    +GAY++      +  ++I  +      PL  G  DG
Sbjct: 144 EFEAMREVFNEV----KGAYSVAIL---FDGKIIVARDPVGFRPLSYGEGDG 188

Length = 442

>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 48/216 (22%)

Query: 21  QVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY 80
           Q+ + GL  L++RG + AGI  +D+                     +   ++  L+  V+
Sbjct: 25  QLTYFGLHSLQHRGQEGAGIVSNDNG------------------KLKGHRDL-GLLSEVF 65

Query: 81  EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHP-QTSGAGNEFLVVHNGVITNYE 139
           ++ A+ +       +  A I H R+AT G  +  N  P        +F + HNG +TN  
Sbjct: 66  KDPADLD-----KLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAV 120

Query: 140 VLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEG--A 197
            L++ L + G  F S +DTE++  L +             P TF   + E +  ++G  A
Sbjct: 121 SLRKELEKQGAIFHSSSDTEILMHLIR---------RSHNP-TFMGKLKEALNTVKGGFA 170

Query: 198 YALIFKSQHY----PNELIACKRGSPLLLG-VKDGA 228
           Y L+ + +      PN         PL +G +K+GA
Sbjct: 171 YLLLTEDKLIAALDPNGF------RPLSIGKMKNGA 200

Length = 484

>gnl|CDD|236427 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional

 Score = 52.1 bits (126), Expect = 6e-07
 Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 69/220 (31%)

Query: 1   MCGIFAYLNYG-VNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVN 59
           MCGI   + +  VN       Q +++ L  L++RG D+AGI   D +             
Sbjct: 1   MCGIVGIVGHSPVN-------QSIYDALTVLQHRGQDAAGIVTIDGN------------- 40

Query: 60  GCPPLVFR-QEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHP 118
                 FR ++ N   LV+ V+         L+     + GI H R+ T G  +   + P
Sbjct: 41  -----RFRLRKAN--GLVRDVFR--TRHMRRLQG----NMGIGHVRYPTAGSSSSAEAQP 87

Query: 119 QTSGAGNEFLV--------VHNGVITNYEVLKETLI----RHGFTFESETDTEVIPKLAK 166
                   F V         HNG +TN E L++ L     RH  T    +D+EV+     
Sbjct: 88  --------FYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINT---TSDSEVLLN--- 133

Query: 167 FVFDKANE--EEGDQPVTFSQV---VVEVMRHLEGAYALI 201
            VF  A+E  +    P+T   +   V  V R + GAYA++
Sbjct: 134 -VF--AHELQKFRGLPLTPEDIFAAVAAVHRRVRGAYAVV 170

Length = 501

>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 35/164 (21%), Positives = 46/164 (28%), Gaps = 60/164 (36%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGI   +        R     L   L  L +RG D +GI ID+                 
Sbjct: 1   CGIAGIIGLDGASVDR---ATLERMLDALAHRGPDGSGIWIDE----------------- 40

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSH-PQT 120
                                                 + H R +            P  
Sbjct: 41  -----------------------------------GVALGHRRLSIID---LSGGAQPMV 62

Query: 121 SGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKL 164
           S  G   ++V NG I NY  L+  L   G  F + +DTEVI  L
Sbjct: 63  SEDGR-LVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHL 105

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia. Length = 220

>gnl|CDD|240112 cd04795, SIS, SIS domain

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 322 IVFIGCGTSYNAALAARPILEELSDLPVTMEIA--SDLVDRQAPIYREDTAVFVSQSGET 379
           I  IG G S   A      L EL+ + V   IA   +     + + + D  + +S SG T
Sbjct: 1   IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRT 60

Query: 380 ADTLQALEYASENGALCVGIT 400
            + L ALE A E G   + IT
Sbjct: 61  EELLAALEIAKELGIPVIAIT 81

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Length = 87

>gnl|CDD|240140 cd05007, SIS_Etherase, N-acetylmuramic acid 6-phosphate etherase

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 354 ASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHC 413
           A+DL          D  + ++ SG T   L AL YA   GAL +GI    GS + +    
Sbjct: 108 AADLQAINLT--ERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADI 165

Query: 414 GVHINAGAEIGVAST--KAYTSQIVVMAML 441
            + +  G E+   ST  KA T+Q + + ML
Sbjct: 166 AIALITGPEVVAGSTRLKAGTAQKLALNML 195

Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate. Length = 257

>gnl|CDD|225014 COG2103, COG2103, Predicted sugar phosphate isomerase [General function prediction only]

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 354 ASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHC 413
            +DL +    +  +D  V ++ SG T   + ALEYA + GA  +GI    GSAI+R    
Sbjct: 119 EADLKNIG--LTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADI 176

Query: 414 GVHINAGAEIGVAST--KAYTSQIVVMAML 441
            +    G E+   ST  KA T+Q +V+ ML
Sbjct: 177 AIEPVVGPEVLTGSTRLKAGTAQKLVLNML 206

Length = 298

>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing)

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 121 SGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI 161
           S  G  +++V NG I N+E L+E L   G+TF++++DTEVI
Sbjct: 62  SNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVI 102

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff [Amino acid biosynthesis, Aspartate family]. Length = 466

>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 51/201 (25%), Positives = 76/201 (37%), Gaps = 42/201 (20%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CG+F    +          Q+ + GL  L++RG + AGI + D    S     +    G 
Sbjct: 12  CGVFGIWGH------EEAAQITYYGLHSLQHRGQEGAGIVVTDGGKLS-----AHKGLGL 60

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
              VF Q G +++L                      A I H R+AT G     N  P   
Sbjct: 61  VTEVF-QNGELDALKGK-------------------AAIGHVRYATAGGGGYENVQPLLF 100

Query: 122 GAGNEFLVV-HNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQP 180
            +    L + HNG + N   LK  L   G  F++ +DTEV+  L K              
Sbjct: 101 RSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIK----------RSGA 150

Query: 181 VTFSQVVVEVMRHLEGAYALI 201
            T  + +   +  L+GAYA +
Sbjct: 151 PTLKEQIKNALSMLKGAYAFL 171

Length = 475

>gnl|CDD|240145 cd05014, SIS_Kpsf, KpsF-like protein

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 25/139 (17%)

Query: 320 RRIVFIGCGTSYNAALAARPILEELS-------DLPVTMEIASDLVDRQAPIYREDTAVF 372
            ++V  G G S      AR I   LS        L  T  +  DL      +   D  + 
Sbjct: 1   GKVVVTGVGKSG---HIARKIAATLSSTGTPAFFLHPTEALHGDL----GMVTPGDVVIA 53

Query: 373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE-----IGVAS 427
           +S SGET + L  L +    GA  + IT    S +A+     V ++   E     +G+A 
Sbjct: 54  ISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAK--LSDVVLDLPVEEEACPLGLAP 111

Query: 428 TKAYTSQIVVMAML-ALAI 445
           T   TS   ++A+  ALA+
Sbjct: 112 T---TSTTAMLALGDALAV 127

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway. Length = 128

>gnl|CDD|235998 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 47/228 (20%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CG+F     G       + ++ + GL  L++RG +SAGI               ++  G 
Sbjct: 34  CGVFGVYAPGEE-----VAKLTYFGLYALQHRGQESAGI---------------ATFEGD 73

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQ-- 119
              + +  G    LV  V++E       LEE       + HTR++T G     N+ P   
Sbjct: 74  KVHLHKDMG----LVSQVFDED-----ILEE-LPGDLAVGHTRYSTTGSSRKANAQPAVL 123

Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQ 179
            +  G    + HNG + N   L+E L+  G    + TD+E+I          A  +  D 
Sbjct: 124 ETRLGP-LALAHNGNLVNTVELREELLARGCELTTTTDSEMIA--------FAIAQAVDA 174

Query: 180 PVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGS---PLLLGV 224
              + +  +   +  +GA++L+  +   P  L+  +  +   PL++G 
Sbjct: 175 GKDWLEAAISAFQRCQGAFSLVIGT---PEGLMGVRDPNGIRPLVIGT 219

Length = 500

>gnl|CDD|223199 COG0121, COG0121, Predicted glutamine amidotransferase [General function prediction only]

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 97  HAGIAHTRWATHGEPAPRNSHPQTSGA-GNEFLVVHNGVITNYEVLKETLIR 147
              IAH R AT GE +  N+HP T    G  +L  HNG +  +++L+   + 
Sbjct: 71  ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEGRKLE 122

Length = 252

>gnl|CDD|129375 TIGR00274, TIGR00274, N-acetylmuramic acid 6-phosphate etherase

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 354 ASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHC 413
           A+DL +    + + D  V ++ SG T   +  L+YA   GAL + I     SA +     
Sbjct: 116 ANDLQNIH--LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADI 173

Query: 414 GVHINAGAEIGVAST--KAYTSQIVVMAMLALAI 445
            +    G EI   S+  KA T+Q +V+ ML+ A 
Sbjct: 174 AIETIVGPEILTGSSRLKAGTAQKMVLNMLSTAS 207

This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 291

>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 126 EFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQ 185
              ++ NG I N+  ++  L + G+ F S +D E+I  L K    K              
Sbjct: 74  TVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYGPK-------------- 119

Query: 186 VVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGV-KDGAV 229
              +   HL+G +A +       N   A +      PL +G  KDG++
Sbjct: 120 ---DFWNHLDGMFATVI-YDMKTNTFFAARDHIGIIPLYIGYAKDGSI 163

Length = 586

>gnl|CDD|183089 PRK11337, PRK11337, DNA-binding transcriptional repressor RpiR; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 367 EDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTH 412
            D  + VS SG T+D ++A+E A +NGA  + ITN+  S IA+   
Sbjct: 188 GDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLAD 233

Length = 292

>gnl|CDD|131862 TIGR02815, agaS_fam, putative sugar isomerase, AgaS family

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 79/370 (21%), Positives = 136/370 (36%), Gaps = 41/370 (11%)

Query: 276 KEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAAL 335
           +EI +QP      +    I      A +  L  L       R + RIV  G GTS     
Sbjct: 7   REIRQQPALWRRLLT---IIQALRPALNAFLEPL-----LARENLRIVLTGAGTSAFIGD 58

Query: 336 AARPILEELSDLPVTMEIASDLVDRQAPIYRED-TAVFVS--QSGETADTLQALEYASEN 392
           A  P L   + L V+    +DLV             + VS  +SG + +++ A+E A + 
Sbjct: 59  ALAPWLASHTGLNVSAVPTTDLVSNPRQYLDPTRPTLLVSFARSGNSPESVAAVELADQL 118

Query: 393 GALC--VGITNTVGSAIAR------KTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALA 444
              C  + +T     A+ R           +      +   A T +++     M +  LA
Sbjct: 119 LPECYHLVLTCNEEGALYRNAINRSNAFALLMPAESNDRSFAMTSSFSC----MTLATLA 174

Query: 445 I-GGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYA 503
           + G +TI +Q           D    + E  + D    VL       + ++  G G    
Sbjct: 175 VLGPETIESQTEER-----FADAALCILESGQWDFSEGVLGYAPW--ERIVYLGSGGLQG 227

Query: 504 TALEGALKVKEVALMHSEGILAGEM--KHGPLALVDENLPILVIATRDACFSKQ--QSVI 559
            A E ALKV E+            +  +HGP +LVD+   ++V  + D  +++Q    ++
Sbjct: 228 LARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVSSDP-YTRQYDLDLL 286

Query: 560 QQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQ---VEDCLQPVINIVPLQLLAYHLT 616
            +L        V+    +++ I   G      +P      D       ++  Q LA+  +
Sbjct: 287 AELRRDNQAGRVVAISAESSDIVAAG--DHFILPPSRHFIDVELAFPYLIFAQTLAFEQS 344

Query: 617 VLRGYNVDQP 626
           +  G   D P
Sbjct: 345 LALGNTPDNP 354

Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases. Length = 372

>gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 47/213 (22%), Positives = 82/213 (38%), Gaps = 45/213 (21%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CG+F    +          QV + GL  L++RG + AGI +++                 
Sbjct: 12  CGVFGIWGH------ENAAQVSYYGLHSLQHRGQEGAGIVVNNGE--------------- 50

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQT- 120
                     +  L+  V+       LN +      + I H R+AT G     N  P   
Sbjct: 51  ---KIVGHKGL-GLISEVFSRGELEGLNGK------SAIGHVRYATAGGSEVANVQPLLF 100

Query: 121 SGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQP 180
             + +   + HNG + N ++L+  L   G  F++ +DTEV+  L K         +    
Sbjct: 101 RFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIK------RSTKDS-- 152

Query: 181 VTFSQVVVEVMRHLEGAYALIFKSQHYPNELIA 213
               + V E +  ++GA+A +  +    NE+I 
Sbjct: 153 --LIESVKEALNKVKGAFAYLLLTG---NEMIV 180

Length = 471

>gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query: 129 VVHNGVITNYEVLKETLIRHGFTFESETDTEVIPK 163
           +V NG I NY  L+  L   G+ F S+ DTEVI K
Sbjct: 72  LVFNGCIYNYRELRAELEALGYRFFSDGDTEVILK 106

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. Length = 589

>gnl|CDD|237142 PRK12570, PRK12570, N-acetylmuramic acid-6-phosphate etherase; Reviewed

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 368 DTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAS 427
           D  V ++ SG T   + ALEYA + GA  + ++    S IA+     +    G E+   S
Sbjct: 129 DVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISPVVGPEVLTGS 188

Query: 428 T--KAYTSQIVVMAMLALAI 445
           T  K+ T+Q +V+ ML+ A 
Sbjct: 189 TRLKSGTAQKMVLNMLSTAS 208

Length = 296

>gnl|CDD|221994 pfam13230, GATase_4, Glutamine amidotransferases class-II

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 100 IAHTRWATHGEPAPRNSHP-QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDT 158
           IAH R AT G+    N+HP      G  ++  HNG +  +   K  L+   +     TD+
Sbjct: 75  IAHIRKATQGDVTLENTHPFMRELWGRHWIFAHNGDLKGF---KPDLL-GRYEPVGTTDS 130

Query: 159 EVI 161
           E  
Sbjct: 131 ERA 133

This family captures members that are not found in pfam00310. Length = 272

>gnl|CDD|240148 cd05017, SIS_PGI_PMI_1, The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETA 380
            IV +G G S         +L + + +PV            A + R+   + VS SG T 
Sbjct: 1   NIVILGMGGSGIGGDLLESLLLDEAKIPV---YVVKDYTLPAFVDRKTLVIAVSYSGNTE 57

Query: 381 DTLQALEYASENGALCVGIT 400
           +TL A+E A E GA  V IT
Sbjct: 58  ETLSAVEQAKERGAKIVAIT 77

These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain. Length = 119

>gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose isomerase; Validated

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIY-REDTAVF-V 373
           + +   IV  G G S       R +L +   +PV +       D   P +  E T V  V
Sbjct: 31  LEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFV-----NRDYTLPAFVDEKTLVIAV 85

Query: 374 SQSGETADTLQALEYASENGALCVGIT 400
           S SG T +TL A+E A + GA  + IT
Sbjct: 86  SYSGNTEETLSAVEQALKRGAKIIAIT 112

Length = 337

>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 70/167 (41%)

Query: 1   MCGIFAYLN--YGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSV 58
           MCGIF  L+     +  R+  L++     R + +RG D +GI   D+             
Sbjct: 1   MCGIFGILDIKTDADELRKKALEMS----RLMRHRGPDWSGIYASDN------------- 43

Query: 59  NGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWA----THGEPAPR 114
                                                  A + H R +      G     
Sbjct: 44  ---------------------------------------AILGHERLSIVDVNGG----- 59

Query: 115 NSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI 161
            + P  +  G   L V NG I N++ L+  L    + F++ +D EVI
Sbjct: 60  -AQPLYNEDGTHVLAV-NGEIYNHQELRAELGD-KYAFQTGSDCEVI 103

Length = 554

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	636
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	100.0
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	100.0
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	100.0
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	100.0
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	100.0
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	100.0
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	100.0
PRK11382	340	frlB fructoselysine-6-P-deglycase; Provisional	100.0
COG2222	340	AgaS Predicted phosphosugar isomerases [Cell envel	100.0
TIGR02815	372	agaS_fam putative sugar isomerase, AgaS family. So	100.0
PRK06388	474	amidophosphoribosyltransferase; Provisional	100.0
PRK07272	484	amidophosphoribosyltransferase; Provisional	100.0
cd00714	215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	100.0
PRK07631	475	amidophosphoribosyltransferase; Provisional	100.0
PRK07349	500	amidophosphoribosyltransferase; Provisional	100.0
PRK06781	471	amidophosphoribosyltransferase; Provisional	100.0
COG0034	470	PurF Glutamine phosphoribosylpyrophosphate amidotr	100.0
PRK08341	442	amidophosphoribosyltransferase; Provisional	100.0
PRK09123	479	amidophosphoribosyltransferase; Provisional	100.0
PRK07847	510	amidophosphoribosyltransferase; Provisional	100.0
PRK05793	469	amidophosphoribosyltransferase; Provisional	100.0
PRK08525	445	amidophosphoribosyltransferase; Provisional	100.0
KOG0572	474	consensus Glutamine phosphoribosylpyrophosphate am	100.0
PLN02440	479	amidophosphoribosyltransferase	100.0
PRK09246	501	amidophosphoribosyltransferase; Provisional	100.0
cd01907	249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	100.0
TIGR01134	442	purF amidophosphoribosyltransferase. Alternate nam	100.0
cd00715	252	GPATase_N Glutamine amidotransferases class-II (GN	100.0
cd00352	220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.96
cd05010	151	SIS_AgaS_like AgaS-like protein. AgaS contains a S	99.96
TIGR03442	251	conserved hypothetical protein TIGR03442. Members	99.95
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	99.95
COG0367	542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	99.95
PTZ00077	586	asparagine synthetase-like protein; Provisional	99.94
cd00712	220	AsnB Glutamine amidotransferases class-II (GATase)	99.94
PRK09431	554	asnB asparagine synthetase B; Provisional	99.93
PRK08674	337	bifunctional phosphoglucose/phosphomannose isomera	99.93
cd03766	181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	99.93
TIGR03104	589	trio_amidotrans asparagine synthase family amidotr	99.93
cd01908	257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	99.92
cd05009	153	SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repea	99.92
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	99.91
PF13522	133	GATase_6: Glutamine amidotransferase domain	99.9
PF00310	361	GATase_2: Glutamine amidotransferases class-II; In	99.9
KOG0571	543	consensus Asparagine synthase (glutamine-hydrolyzi	99.89
TIGR02128	308	G6PI_arch bifunctional phosphoglucose/phosphomanno	99.89
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	99.87
cd05008	126	SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea	99.83
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	99.83
COG1737	281	RpiR Transcriptional regulators [Transcription]	99.78
PF13230	271	GATase_4: Glutamine amidotransferases class-II; PD	99.76
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	99.76
cd05005	179	SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI	99.76
PF13537	125	GATase_7: Glutamine amidotransferase domain; PDB:	99.75
PF01380	131	SIS: SIS domain SIS domain web page.; InterPro: IP	99.75
PRK15482	285	transcriptional regulator MurR; Provisional	99.74
COG0067	371	GltB Glutamate synthase domain 1 [Amino acid trans	99.73
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	99.73
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.72
PRK11557	278	putative DNA-binding transcriptional regulator; Pr	99.72
PRK11337	292	DNA-binding transcriptional repressor RpiR; Provis	99.71
COG0794	202	GutQ Predicted sugar phosphate isomerase involved	99.71
cd05710	120	SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo	99.7
PRK11302	284	DNA-binding transcriptional regulator HexR; Provis	99.67
cd05013	139	SIS_RpiR RpiR-like protein. RpiR contains a SIS (S	99.67
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.66
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	99.64
cd05007	257	SIS_Etherase N-acetylmuramic acid 6-phosphate ethe	99.63
cd05006	177	SIS_GmhA Phosphoheptose isomerase is a member of t	99.61
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	99.6
PRK14101	638	bifunctional glucokinase/RpiR family transcription	99.59
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.59
TIGR00274	291	N-acetylmuramic acid 6-phosphate etherase. This pr	99.58
TIGR00441	154	gmhA phosphoheptose isomerase. Involved in lipopol	99.58
cd01909	199	betaLS_CarA_N Glutamine amidotransferases class-II	99.57
PRK00414	192	gmhA phosphoheptose isomerase; Reviewed	99.55
PRK13937	188	phosphoheptose isomerase; Provisional	99.55
cd05017	119	SIS_PGI_PMI_1 The members of this protein family c	99.53
PRK12570	296	N-acetylmuramic acid-6-phosphate etherase; Reviewe	99.52
PRK02947	246	hypothetical protein; Provisional	99.51
cd05009	153	SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repea	99.51
PRK13938	196	phosphoheptose isomerase; Provisional	99.5
cd01910	224	Wali7 This domain is present in Wali7, a protein o	99.49
PRK10886	196	DnaA initiator-associating protein DiaA; Provision	99.45
PRK13936	197	phosphoheptose isomerase; Provisional	99.43
COG0121	252	Predicted glutamine amidotransferase [General func	99.39
COG0279	176	GmhA Phosphoheptose isomerase [Carbohydrate transp	99.34
COG2103	298	Predicted sugar phosphate isomerase [General funct	99.33
cd04795	87	SIS SIS domain. SIS (Sugar ISomerase) domains are	99.22
cd05015	158	SIS_PGI_1 Phosphoglucose isomerase (PGI) contains	99.19
PRK09533	948	bifunctional transaldolase/phosoglucose isomerase;	99.11
KOG0573	520	consensus Asparagine synthase [Amino acid transpor	99.04
COG4821	243	Uncharacterized protein containing SIS (Sugar ISom	99.04
PF10432	155	bact-PGI_C: Bacterial phospho-glucose isomerase C-	99.0
PF01380	131	SIS: SIS domain SIS domain web page.; InterPro: IP	98.99
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	98.97
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	98.8
cd05637	132	SIS_PGI_PMI_2 The members of this protein family c	98.76
PRK03868	410	glucose-6-phosphate isomerase; Provisional	98.56
COG0166	446	Pgi Glucose-6-phosphate isomerase [Carbohydrate tr	98.33
cd05013	139	SIS_RpiR RpiR-like protein. RpiR contains a SIS (S	98.31
PRK00973	446	glucose-6-phosphate isomerase; Provisional	98.29
PRK14096	528	pgi glucose-6-phosphate isomerase; Provisional	98.26
cd05005	179	SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI	98.17
cd05008	126	SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea	98.15
cd05710	120	SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo	98.15
PRK11382	340	frlB fructoselysine-6-P-deglycase; Provisional	98.11
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.06
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	98.04
cd04795	87	SIS SIS domain. SIS (Sugar ISomerase) domains are	97.95
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	97.95
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.91
PF12481	228	DUF3700: Aluminium induced protein ; InterPro: IPR	97.86
PRK14095	533	pgi glucose-6-phosphate isomerase; Provisional	97.86
PRK11302	284	DNA-binding transcriptional regulator HexR; Provis	97.86
PRK11337	292	DNA-binding transcriptional repressor RpiR; Provis	97.84
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	97.81
COG1737	281	RpiR Transcriptional regulators [Transcription]	97.8
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	97.78
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	97.76
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	97.75
PRK13937	188	phosphoheptose isomerase; Provisional	97.71
PRK11557	278	putative DNA-binding transcriptional regulator; Pr	97.7
PRK10886	196	DnaA initiator-associating protein DiaA; Provision	97.68
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	97.67
COG2222	340	AgaS Predicted phosphosugar isomerases [Cell envel	97.67
COG0794	202	GutQ Predicted sugar phosphate isomerase involved	97.67
PRK13936	197	phosphoheptose isomerase; Provisional	97.66
PRK13938	196	phosphoheptose isomerase; Provisional	97.62
PRK15482	285	transcriptional regulator MurR; Provisional	97.6
cd05006	177	SIS_GmhA Phosphoheptose isomerase is a member of t	97.52
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.51
TIGR02815	372	agaS_fam putative sugar isomerase, AgaS family. So	97.47
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.45
cd05010	151	SIS_AgaS_like AgaS-like protein. AgaS contains a S	97.42
PRK00414	192	gmhA phosphoheptose isomerase; Reviewed	97.41
PRK02947	246	hypothetical protein; Provisional	97.29
PRK14101	638	bifunctional glucokinase/RpiR family transcription	97.28
PRK14097	448	pgi glucose-6-phosphate isomerase; Provisional	97.16
TIGR00441	154	gmhA phosphoheptose isomerase. Involved in lipopol	97.13
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	97.06
PLN02649	560	glucose-6-phosphate isomerase	97.01
cd05017	119	SIS_PGI_PMI_1 The members of this protein family c	96.97
PRK00179	548	pgi glucose-6-phosphate isomerase; Reviewed	96.91
PF00342	486	PGI: Phosphoglucose isomerase The structure is C a	96.73
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	96.53
PRK08674	337	bifunctional phosphoglucose/phosphomannose isomera	96.47
cd05007	257	SIS_Etherase N-acetylmuramic acid 6-phosphate ethe	96.43
PF10740	172	DUF2529: Protein of unknown function (DUF2529); In	96.21
PRK12570	296	N-acetylmuramic acid-6-phosphate etherase; Reviewe	96.2
TIGR02128	308	G6PI_arch bifunctional phosphoglucose/phosphomanno	95.91
TIGR00274	291	N-acetylmuramic acid 6-phosphate etherase. This pr	95.7
TIGR01701	743	Fdhalpha-like oxidoreductase alpha (molybdopterin)	95.47
PTZ00430	552	glucose-6-phosphate isomerase; Provisional	95.43
cd02767	574	MopB_ydeP The MopB_ydeP CD includes a group of rel	95.29
cd05015	158	SIS_PGI_1 Phosphoglucose isomerase (PGI) contains	95.04
cd02753	512	MopB_Formate-Dh-H Formate dehydrogenase H (Formate	94.2
PRK09939	759	putative oxidoreductase; Provisional	93.81
COG4821	243	Uncharacterized protein containing SIS (Sugar ISom	93.46
cd02754	565	MopB_Nitrate-R-NapA-like Nitrate reductases, NapA	92.84
TIGR01591	671	Fdh-alpha formate dehydrogenase, alpha subunit, ar	92.08
COG0279	176	GmhA Phosphoheptose isomerase [Carbohydrate transp	91.68
cd02762	539	MopB_1 The MopB_1 CD includes a group of related u	91.48
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	91.44
cd02759	477	MopB_Acetylene-hydratase The MopB_Acetylene-hydrat	91.12
cd02755	454	MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik	91.01
cd02770	617	MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the D	90.67
PTZ00254	249	40S ribosomal protein SA; Provisional	90.37
TIGR01012	196	Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa	89.98
PRK04020	204	rps2P 30S ribosomal protein S2; Provisional	88.43
cd02750	461	MopB_Nitrate-R-NarG-like Respiratory nitrate reduc	87.35
cd02752	649	MopB_Formate-Dh-Na-like Formate dehydrogenase N, a	87.13
cd02766	501	MopB_3 The MopB_3 CD includes a group of related u	86.47
cd00368	374	Molybdopterin-Binding Molybdopterin-Binding (MopB)	85.89
TIGR03479	912	DMSO_red_II_alp DMSO reductase family type II enzy	85.88
PF09147	201	DUF1933: Domain of unknown function (DUF1933); Int	84.76
cd02769	609	MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD	84.74
TIGR00509	770	bisC_fam molybdopterin guanine dinucleotide-contai	83.01
TIGR01553	1009	formate-DH-alph formate dehydrogenase, alpha subun	82.9
PRK13532	830	nitrate reductase catalytic subunit; Provisional	82.57
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	80.85
COG1029	429	FwdB Formylmethanofuran dehydrogenase subunit B [E	80.64

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.3e-113  Score=916.21  Aligned_cols=579  Identities=42%  Similarity=0.721  Sum_probs=526.4

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||+|++..     ..++...|..+|++|++||+||+||++.+++               .+.++|..|++++|. ...
T Consensus         1 MCGIvG~i~~-----~~~~~~il~~gL~rLEYRGYDSaGiav~~~~---------------~l~~~k~~Gkv~~l~-~~~   59 (597)
T COG0449           1 MCGIVGYIGF-----LREAIDILLEGLKRLEYRGYDSAGIAVVGDG---------------SLNVRKQVGKISNLE-ELL   59 (597)
T ss_pred             CCcEEEEEcC-----CccHHHHHHHHHHHHHccCCCcccEEEEeCC---------------eEEEEEccCCHHHHH-hhh
Confidence            9999999953     3447889999999999999999999999764               899999999999763 111


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                      .         ..++.|+++||||||||+|.++..|+||+.+   +++++||||.|.||.+||++|..+|+.|.++||||+
T Consensus        60 ~---------~~~~~~~~gIgHTRWATHG~P~~~NAHPh~~---~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEV  127 (597)
T COG0449          60 N---------KEPLIGGVGIAHTRWATHGGPTRANAHPHSD---GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEV  127 (597)
T ss_pred             c---------ccccCCceeeeeccccCCCCCCcCCCCCCCC---CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHH
Confidence            1         1235699999999999999999999999975   599999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFD  235 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~  235 (636)
                      |+||+++++++          ++.+|++.++++|+|+|++++++++++++||++|+.+||++|+.+     +|+-.++++
T Consensus       128 i~hLi~~~~~~----------~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~sPL~iG~g~~e~f~aSD~~a~l~  197 (597)
T COG0449         128 IAHLLEEIYDT----------SLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKGSPLVIGVGEGENFLASDVSALLN  197 (597)
T ss_pred             HHHHHHHHHHh----------HHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcCCCCeEEEecCCcceEecChhhhhh
Confidence            99999988753          389999999999999999999999988999999999999999988     777788888


Q ss_pred             ee----eccCCCe--eeC------CCcccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCccccc
Q 006659          236 NA----KGRNGGT--YAR------PASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKS  303 (636)
Q Consensus       236 ~~----~~~~g~~--~~~------~~~~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~  303 (636)
                      ++    .+.||++  ...      +|...|.+...+|+....+|++|++||+|||+|||+.+++++..+.+...   ...
T Consensus       198 ~t~~~~~l~dgd~~~~~~~~v~~~~g~v~r~~~~~~~~~~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~~~---~~~  274 (597)
T COG0449         198 FTRRFVYLEEGDIAKLTTDGVSINDGNVLRDVPVIEWDLCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELV---QNE  274 (597)
T ss_pred             hhceEEEeCCCCEEEEECCcEEEecCeeeeeeEEeccChhHHhcCCCCchHHHHHHhhHHHHHHHHHhhhhhhh---hhh
Confidence            66    7889988  111      45578999999999999999999999999999999999999987655311   001


Q ss_pred             ccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHH
Q 006659          304 VLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTL  383 (636)
Q Consensus       304 l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i  383 (636)
                         ..    .+.+.++++|+|+|||+||+||+.++++|+++.++++.+.-+++|.+....+.+++++|+|||||+|.+|+
T Consensus       275 ---~~----~~~~~~~~rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~~~~~~~~L~I~ISQSGETaDTl  347 (597)
T COG0449         275 ---LD----LDILREVDRIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTL  347 (597)
T ss_pred             ---hc----hhhhcccceEEEEECcHHHHHHHHHHHHHHHHhCCCeEEEeechhhhhccCCCCCcEEEEEccCcccHHHH
Confidence               11    11567999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             HHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Q 006659          384 QALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS-TQARREAIIDG  462 (636)
Q Consensus       384 ~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~~~~  462 (636)
                      ++++.+|++|+++++|||..+|+|++.+|+++++.+|+|..+++||+|++|+++|++|++.++..++. +.++.+.+.++
T Consensus       348 ~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~~~g~i~~~~~~~~~~~  427 (597)
T COG0449         348 AALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQRGTISEEEERSLIKE  427 (597)
T ss_pred             HHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCceeeecchhHHHHHHHHHHHHHHHhHhhCccchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988864 66788889999


Q ss_pred             HhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCe
Q 006659          463 LCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPI  542 (636)
Q Consensus       463 l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~v  542 (636)
                      |..+|+.+++++..++.++++++.+.+.++++++|+|.+||+|+||||||+|++|+||++|+++|++|||+.++++++||
T Consensus       428 L~~lp~~i~~~l~~~~~i~~~a~~l~~~~~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pV  507 (597)
T COG0449         428 LQKLPNHIPKVLAAEEKIKELAKRLADAKDFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPV  507 (597)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhcccCCEEEEcCCCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcCCCcE
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCC
Q 006659          543 LVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYN  622 (636)
Q Consensus       543 i~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~  622 (636)
                      |++.+++...+++...++++++||+++++|..++....    ..+..+.+|.+++.++||++++|+|+||||+|+.+|+|
T Consensus       508 i~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~~~~----~~~~~i~~p~~~e~laPi~~~iPlQLLAY~iA~~kG~d  583 (597)
T COG0449         508 IAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGDVAE----DGDDLILLPEVDELLAPLLYTIPLQLLAYHIALAKGID  583 (597)
T ss_pred             EEEeCcchHHHHHHHHHHHHHcCCCeEEEEecCCcccc----cCceEEecCCCcchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence            99999887789999999999999999999998775211    24577888999999999999999999999999999999


Q ss_pred             CCCCCCCcceeecC
Q 006659          623 VDQPRNLAKSVTTQ  636 (636)
Q Consensus       623 pd~pr~l~k~v~~~  636 (636)
                      ||+||||+|+||||
T Consensus       584 vD~PRnLAKsVTVE  597 (597)
T COG0449         584 VDKPRNLAKSVTVE  597 (597)
T ss_pred             CCCCCccccceeeC
Confidence            99999999999997

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=100.00  E-value=1.6e-106  Score=907.61  Aligned_cols=622  Identities=48%  Similarity=0.783  Sum_probs=525.5

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCC-CCCCCCcEEEeecccchhhhhHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSS-SVNGCPPLVFRQEGNIESLVKSV   79 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~g~~~~l~~~~   79 (636)
                      ||||||+++....+..+++...++.+|.+||||||||+||++.++.. +.-..++. ...++.+.++|+.|++++|.+.+
T Consensus         1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~-~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~   79 (670)
T PTZ00394          1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIG-SEKEDGTAASAPTPRPCVVRSVGNISQLREKV   79 (670)
T ss_pred             CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcc-cccccccccccCCCcEEEEECCccHHHHHHHH
Confidence            99999999643111112677899999999999999999999952100 00000000 00123589999999999988667


Q ss_pred             HHHHhhh-hhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHh
Q 006659           80 YEEVAET-ELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDT  158 (636)
Q Consensus        80 f~~~~~~-~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDs  158 (636)
                      |++.... ..+++..+.|+++|||+||||+|.++..|+|||... ++++++||||+|+|+.+||++|..+|+.|.++|||
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~-~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDt  158 (670)
T PTZ00394         80 FSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSN-NGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDT  158 (670)
T ss_pred             hcchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCC-CCCEEEEECeeEecHHHHHHHHHHcCCEecCCChH
Confidence            6541100 111112457999999999999999888999999876 77999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc------------
Q 006659          159 EVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD------------  226 (636)
Q Consensus       159 E~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~------------  226 (636)
                      |+|++++++.+..||      ..++.+++++++++|+|+|||++++...+++||++||+|||++|+.+            
T Consensus       159 Evi~~li~~~~~~~g------~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~~PL~iG~~~~~~~~~~~~~~~  232 (670)
T PTZ00394        159 EVISVLSEYLYTRKG------IHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKGSPLMVGIRRTDDRGCVMKLQT  232 (670)
T ss_pred             HHHHHHHHHHHHhcC------CCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcCCceEEEecccccccccccccc
Confidence            999999987776554      13899999999999999999999977657999999999999999853            


Q ss_pred             --------------Cccccccccee----eccCCCe--ee--------CCCc----ccceeeeeccchhhhhcCChHHHH
Q 006659          227 --------------GAVSILKFDNA----KGRNGGT--YA--------RPAS----VQRALSILEMEVEQINKGNYEHYM  274 (636)
Q Consensus       227 --------------~~~~~~~~~~~----~~~~g~~--~~--------~~~~----~~~~i~~~~~~~~~~~~~~y~~~m  274 (636)
                                    +|+..|+.+++    .++||++  ..        .+|.    ..+.++.++|++...+|++|+|||
T Consensus       233 ~~~~~~~~~~~~~~aSd~~a~~~~t~~~~~l~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~hfM  312 (670)
T PTZ00394        233 YDLTDLSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGALRFYNAAERQRSIVKREVQHLDAKPEGLSKGNYPHFM  312 (670)
T ss_pred             ccccccCCCCcEEEEeChHHHHHhhceEEEecCCeEEEEECCEEEEEeCCCCcccccccceEEEeCCHhHhhcCCCchHH
Confidence                          34555666655    7899998  11        1232    457889999999999999999999


Q ss_pred             HHHHHhcHHHHHHHhhccccccCCcccccccccch-HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee
Q 006659          275 QKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGL-KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI  353 (636)
Q Consensus       275 ~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l-~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~  353 (636)
                      +|||+|||+++++++..+.+...    ..+..+.+ .++++.++++++|+|+|||+|+++|..+++++.++.++++.+..
T Consensus       313 lkEI~EQP~~l~~~l~~~~~~~~----~~~~l~~~~~~~~~~l~~a~rI~ivG~GtS~~aa~~ak~~~~kl~~i~v~v~~  388 (670)
T PTZ00394        313 LKEIYEQPESVISSMHGRIDFSS----GTVQLSGFTQQSIRAILTSRRILFIACGTSLNSCLAVRPLFEELVPLPISVEN  388 (670)
T ss_pred             HHHHHhhHHHHHHHHHhhhhhcc----CcccchhhHHHHHHHHhCCCEEEEEEechHHHHHHHHHHHHHHhcCCCEEEec
Confidence            99999999999999876443111    11222333 34556788999999999999999999999999999999999999


Q ss_pred             ccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHH
Q 006659          354 ASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTS  433 (636)
Q Consensus       354 ~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~  433 (636)
                      ++++.+.....+++|++|+||+||+|++++++++.||++|+++|+||++.+|+|++.||++|.+++++|..++.|++|++
T Consensus       389 asef~~~~~~~~~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E~~va~Tks~ts  468 (670)
T PTZ00394        389 ASDFLDRRPRIQRDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTS  468 (670)
T ss_pred             cchhhhhccCCCCCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEecccccccccccHhHHH
Confidence            99997776677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHH
Q 006659          434 QIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKV  512 (636)
Q Consensus       434 ~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl  512 (636)
                      ++++++++++.++..++...++++++.+.+..+|+.++++++. +++++++|+.+.+.++++++|+|++||+|+|+||||
T Consensus       469 ql~~l~llal~la~~~~~~~~~~~~l~~~l~~lp~~i~~~l~~~~~~~~~~a~~l~~~~~~~~lGrG~~y~~A~EgALKl  548 (670)
T PTZ00394        469 QVVVLTLVALLLSSDSVRLQERRNEIIRGLAELPAAISECLKITHDPVKALAARLKESSSILVLGRGYDLATAMEAALKV  548 (670)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence            9999999999988765433445678889999999999999986 788999999999999999999999999999999999


Q ss_pred             HHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEc
Q 006659          513 KEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEV  592 (636)
Q Consensus       513 ~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~  592 (636)
                      +|++|+||++|+++||+|||+++++++++||+|.++++.++++.+++++++++|+++++|+++++....  ...+..+.+
T Consensus       549 kE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~~~~evk~~g~~vi~I~~~~~~~~~--~~~~~~i~v  626 (670)
T PTZ00394        549 KELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKSAVQQVKARGGAVVVFATEVDAELK--AAASEIVLV  626 (670)
T ss_pred             HHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHHHHHHHHHcCCeEEEEECCCcchhc--ccCCcEEEC
Confidence            999999999999999999999999999999999999999999999999999999999999987542211  123467899


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659          593 PQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       593 p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~  636 (636)
                      |.+.+++.|+++++|+|+|||++|..+|+|||+||||+||||||
T Consensus       627 p~~~~~l~pll~~iplQllAy~~A~~rG~dpD~PRnLaKsVtv~  670 (670)
T PTZ00394        627 PKTVDCLQCVVNVIPFQLLAYYMALLRGNNVDCPRNLAKSVTVQ  670 (670)
T ss_pred             CCCchhHhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEeC
Confidence            98889999999999999999999999999999999999999997

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=100.00  E-value=5.1e-106  Score=907.60  Aligned_cols=624  Identities=84%  Similarity=1.246  Sum_probs=524.3

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++........++...++.+|.+||||||||+||++.++.+          .+...+.++|+.|.+++|.+++|
T Consensus         1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~----------~~~~~~~~~k~~G~~~~l~~~~~   70 (680)
T PLN02981          1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPS----------LESSSPLVFREEGKIESLVRSVY   70 (680)
T ss_pred             CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCc----------ccccceEEEEcCCCHHHHHHHHh
Confidence            99999999642110122577899999999999999999999986420          00012789999999999987777


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                      ....+..++.+..++|+++|||+||+|+|.++..|+|||.....+++++||||+|+|+.+||++|...|+.|.++||||+
T Consensus        71 ~~~~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEv  150 (680)
T PLN02981         71 EEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEV  150 (680)
T ss_pred             hhccccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHH
Confidence            42111222212246799999999999999888899999987535789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc--------------
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD--------------  226 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~--------------  226 (636)
                      |++++.+.+..|+...+  ..++.+++++++++|+|+|||++++...+++||++||+|||++|+++              
T Consensus       151 i~~li~~~~~~~~~~~~--~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~~PL~iG~~~~~~~~~~~~~~~~~  228 (680)
T PLN02981        151 IPKLAKFVFDKLNEEEG--DVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRGSPLLLGVKELPEEKNSSAVFTSE  228 (680)
T ss_pred             HHHHHHHHHHhcccccC--CCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecCCceEEEecCcccccccccccccc
Confidence            99999887766541000  02799999999999999999999998767999999999999999983              


Q ss_pred             ---------------Cccccccccee----eccCCCe--eeC--------CC------------c-ccceeeeeccchhh
Q 006659          227 ---------------GAVSILKFDNA----KGRNGGT--YAR--------PA------------S-VQRALSILEMEVEQ  264 (636)
Q Consensus       227 ---------------~~~~~~~~~~~----~~~~g~~--~~~--------~~------------~-~~~~i~~~~~~~~~  264 (636)
                                     +|+..|+..++    .++||++  +..        +|            . ..+.++.++|+...
T Consensus       229 ~~~~~~~~~~~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (680)
T PLN02981        229 GFLTKNRDKPKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGVGIYKFENEKGRGGGGLSRPASVERALSTLEMEVEQ  308 (680)
T ss_pred             cccccccccCCcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCeEEEEeCCCCccccccccccccccccceEEeeCCHHH
Confidence                           23344444333    7999999  221        22            2 35788899999999


Q ss_pred             hhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHh
Q 006659          265 INKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEEL  344 (636)
Q Consensus       265 ~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~  344 (636)
                      .+|++|+|||++||+|||+.+++++..++.............+.+.++++.+.++++|+|+|||+|+++|..+++++.++
T Consensus       309 ~~k~~y~~~m~kEI~EQP~~l~~~l~~r~~~~~~~~~~~~~l~~l~~~~~~l~~~~~I~~~G~GsS~~aa~~a~~~l~kl  388 (680)
T PLN02981        309 IMKGNYDHYMQKEIHEQPESLTTTMRGRLIRGGSGKAKRVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEEL  388 (680)
T ss_pred             hccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987654211000000223355777788889999999999999999999999999999


Q ss_pred             cCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCccc
Q 006659          345 SDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIG  424 (636)
Q Consensus       345 ~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~  424 (636)
                      .++++.+..++++.+......++|++|++|+||+|++++++++.||++|+++|+||++.+|+|++.||++|.+++++|.+
T Consensus       389 ~~i~v~~~~~sef~~~~~~~~~~~lvI~ISqSGeT~eti~Al~~Ak~~Ga~~IaITn~~~S~La~~ad~~i~~~~g~E~~  468 (680)
T PLN02981        389 SGVPVTMELASDLLDRQGPIYREDTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHINAGAEIG  468 (680)
T ss_pred             hCCCEEEecchHHHhccccCCCCCeEEEEeCCcCCHHHHHHHHHHHHCCCcEEEEECCCCChhHhccCeeEEecCccccc
Confidence            99999999999987665556789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHH
Q 006659          425 VASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYAT  504 (636)
Q Consensus       425 ~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~  504 (636)
                      ++.|++|+++++++++|++.++.......+.+++++++|..+|+.++++++..++++++|+.+.+.++++++|+|++||+
T Consensus       469 ~a~Tksfts~~~~l~llal~l~~~~~~~~~~~~~~~~~l~~lp~~l~~vl~~~~~~~~~a~~l~~~~~~~~lG~G~~yg~  548 (680)
T PLN02981        469 VASTKAYTSQIVAMTMLALALGEDSISSRSRREAIIDGLFDLPNKVREVLKLDQEMKELAELLIDEQSLLVFGRGYNYAT  548 (680)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhhCCCcEEEEeCCCCHHH
Confidence            99999999999999999999886443333444678889999999999999866789999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCC
Q 006659          505 ALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPG  584 (636)
Q Consensus       505 A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~  584 (636)
                      |+|+||||+|++|+||++++++||+|||+++++++++||+|.++++.++++.+++++++++|+++++|+++++.......
T Consensus       549 A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~l~~~~~~~~~~~~~~~el~~~g~~vi~I~~~~~~~~~~~~  628 (680)
T PLN02981        549 ALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIVIATRDACFSKQQSVIQQLRARKGRLIVICSKGDASSVCPS  628 (680)
T ss_pred             HHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEEEEcCCchHHHHHHHHHHHHHcCCEEEEEEcCCcchhcccc
Confidence            99999999999999999999999999999999999999999999888999999999999999999999987542110001


Q ss_pred             CcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659          585 GSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       585 ~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~  636 (636)
                      ..+..+.+|.+++.+.|+++++|+|+|||++|..+|+|||+||||+||||||
T Consensus       629 ~~~~~i~~p~~~~~l~pll~iiplQllAy~~A~~~G~dpD~PRnLaK~vtve  680 (680)
T PLN02981        629 GGCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGHNVDQPRNLAKSVTTQ  680 (680)
T ss_pred             CCCeEEEEeccchHHhHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEeC
Confidence            2346788998888999999999999999999999999999999999999998

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.5e-104  Score=802.67  Aligned_cols=608  Identities=58%  Similarity=0.938  Sum_probs=551.3

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+.++-..+...++.+.++++|++|++||+||+|++......             ....++|++|+++.|.    
T Consensus         1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~-------------~s~~~~k~~GkVkaL~----   63 (670)
T KOG1268|consen    1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDEL-------------ESLLIYKQTGKVSSLK----   63 (670)
T ss_pred             CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcc-------------cchhhhcccCceeehh----
Confidence            99999999988777778899999999999999999999999986531             2577899999998876    


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                      +...+...+++.++..+++|+|+||||+|.++..|+||+.....+.|++||||.|.||++||+.|..+|+.|.++||||.
T Consensus        64 e~i~~q~~~l~~~f~sH~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEc  143 (670)
T KOG1268|consen   64 EEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTEC  143 (670)
T ss_pred             HHHhhcCcccceeeeeeeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHH
Confidence            33333367777888999999999999999999999999997767789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc------------Cc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD------------GA  228 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~------------~~  228 (636)
                      |+.|+.+.+++.+.     ..++.+..+.++++++|+|++++.....++.+.+.|+++||.+|+++            |.
T Consensus       144 iaKL~~~~~D~~~~-----~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgSPlliGvKs~~kls~d~~~V~y~  218 (670)
T KOG1268|consen  144 IAKLYKHIYDTSPE-----DLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYG  218 (670)
T ss_pred             HHHHHHHHHhhCCC-----cccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccCCcceeeecccccccccceeeecc
Confidence            99999998887541     36899999999999999999999999999999999999999999997            11


Q ss_pred             c-------------cc--------------------ccccee----eccCCCee------------eC-CCcccceeeee
Q 006659          229 V-------------SI--------------------LKFDNA----KGRNGGTY------------AR-PASVQRALSIL  258 (636)
Q Consensus       229 ~-------------~~--------------------~~~~~~----~~~~g~~~------------~~-~~~~~~~i~~~  258 (636)
                      +             +.                    +.+.++    .++++++.            .. .|...|.++.+
T Consensus       219 ~~~~~~~~~~~~~d~~~~~~~~~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~lsihr~~~~~~~~~R~i~tl  298 (670)
T KOG1268|consen  219 DTQEVSYLKLNKTDTKASLHFLAGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGELTIHRGKRTAGPSTRSIQTL  298 (670)
T ss_pred             ccceecccccCCcccccccccccCCceEEEEecCcchhheecceeEEeccCcEEEEecCceEEEeeccccCCcchHHHHH
Confidence            0             00                    111111    34555551            11 22357899999


Q ss_pred             ccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHH
Q 006659          259 EMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAAR  338 (636)
Q Consensus       259 ~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~  338 (636)
                      +.+..+++|+.|++||.|||+|||+++.++++.+.....    +.+.+..++.-...++.++|++++|||+||++|.+.+
T Consensus       299 emEl~qImKG~yd~yMqKEI~EQpeS~~ntMRGRv~~~~----~~V~LGGlk~~l~~irr~rRli~iacgtSyhs~~A~R  374 (670)
T KOG1268|consen  299 EMELQQIMKGNYDYYMQKEIYEQPESLVNTMRGRVSFPL----NKVVLGGLKDYLPEIRRCRRLIMVACGTSYHSALATR  374 (670)
T ss_pred             HHHHHHHcCCchHhhhhhHHhhCchHHHHhccceecccc----ceeeecCCcchhhhhhhccccEEEEecchHHHHHHHH
Confidence            999999999999999999999999999999998877654    5567788888899999999999999999999999999


Q ss_pred             HHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcC
Q 006659          339 PILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHIN  418 (636)
Q Consensus       339 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~  418 (636)
                      .+++.+..+|+.++-+++|.....++-.+|+++++||||+|.+++-|++.++++|+-+|+|||..+|.+.+..++-+.++
T Consensus       375 ~ilEEL~eiPV~vElAsDflDR~~pifRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiN  454 (670)
T KOG1268|consen  375 PILEELSEIPVSVELASDFLDRNTPIFRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNTVGSSISRETHCGVHIN  454 (670)
T ss_pred             HHHHHHhcCCeeeehhhhhHhcCCCceeccEEEEEecCCchHHHHHHHHHHHhcCceEEEeecccCcccccccccceecc
Confidence            99999999999999999999888888899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeC
Q 006659          419 AGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGR  498 (636)
Q Consensus       419 ~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~  498 (636)
                      +|||.++++||+||+|+..+.++++.++.++.+.+++..++++.|..+|+.++++++.++.++++|.++.+.+.+.++|+
T Consensus       455 aGpEigvAsTKaYTSQ~i~lvm~aL~~s~d~is~~~RR~eIi~gL~~l~~~ikevL~l~~~i~~la~~l~~~~slLi~GR  534 (670)
T KOG1268|consen  455 AGPEIGVASTKAYTSQYIALVMFALWMSEDRVSKQERRKEIIDGLKDLPSQIKEVLELDPKIKDLAKELKDHKSLLIMGR  534 (670)
T ss_pred             CCCccceeechHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccceEEEecc
Confidence            99999999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCC
Q 006659          499 GYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDA  578 (636)
Q Consensus       499 G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~  578 (636)
                      |.+|++|+|||||++|++++|+++.-.+|.+|||++++|++.|++++.+.|..+.+.+..++++.+|++++|+|.++++.
T Consensus       535 Gy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~na~qQv~aRkG~pIiic~~~~~  614 (670)
T KOG1268|consen  535 GYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAIQQVTARKGRPIIICDKGDK  614 (670)
T ss_pred             cccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHHHHHHHHHhcCCCeEEEecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             cCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659          579 ASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       579 ~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~  636 (636)
                      ...  ......+.+|.+-+.+..++.++|+|+|+|++|+.||+|.|.||||+|+||||
T Consensus       615 ~~~--~~~~~~~~vP~tvDClQgil~viPlQLlsyhlav~rg~~vD~PRnlAkSvtve  670 (670)
T KOG1268|consen  615 EEQ--KAGNKTLEVPQTVDCLQGILNVIPLQLLSYHLAVLRGINVDFPRNLAKSVTVE  670 (670)
T ss_pred             hhh--cccceEEeCCchhhhhhhhhhhhhHHHHHHHHHHHcCCCCCCccccccccccC
Confidence            432  12345699999888999999999999999999999999999999999999997

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=100.00  E-value=2e-99  Score=855.15  Aligned_cols=592  Identities=36%  Similarity=0.575  Sum_probs=509.5

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEee--cccchhhhhH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQ--EGNIESLVKS   78 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~g~~~~l~~~   78 (636)
                      ||||||+++      ..++...++.+|.+||||||||+||++.+++              +.+.++|.  .|.+++    
T Consensus        24 MCGI~G~~~------~~~~~~~~~~~l~~L~hRG~ds~Gia~~~~~--------------~~~~~~k~~g~g~v~~----   79 (640)
T PTZ00295         24 CCGIVGYLG------NEDASKILLEGIEILQNRGYDSCGISTISSG--------------GELKTTKYASDGTTSD----   79 (640)
T ss_pred             CCeEEEEEc------CcchHHHHHHHHHHHHhcCCCeeEEEEEeCC--------------CcEEEEEeCCCCchHH----
Confidence            999999995      3356788999999999999999999998643              25888884  455553    


Q ss_pred             HHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHh
Q 006659           79 VYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDT  158 (636)
Q Consensus        79 ~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDs  158 (636)
                      +|+++.+. ++ ....+|+++|||+||||+|..+..|+|||... .++++++|||+|+|+.+||++|...|+.|.++|||
T Consensus        80 ~~~~~~~~-~~-~~~~~~~~~igH~R~at~g~~~~~n~qP~~~~-~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDs  156 (640)
T PTZ00295         80 SIEILKEK-LL-DSHKNSTIGIAHTRWATHGGKTDENAHPHCDY-KKRIALVHNGTIENYVELKSELIAKGIKFRSETDS  156 (640)
T ss_pred             HHHHHHHH-hh-cCCCCCcEEEEEeccccCCCCCcCCCCCCCCC-CCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChH
Confidence            55654321 21 11457899999999999998888999999865 57899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccc
Q 006659          159 EVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILK  233 (636)
Q Consensus       159 E~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~  233 (636)
                      |+|++++.+++. ++       .++.+++++++++|+|+|||++++..++++|+++||+||||+|..+     +|+..++
T Consensus       157 Evi~~li~~~~~-~g-------~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~~PL~~g~~~~~~~~aSE~~al  228 (640)
T PTZ00295        157 EVIANLIGLELD-QG-------EDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNGSPLLVGIGDDSIYVASEPSAF  228 (640)
T ss_pred             HHHHHHHHHHHh-cC-------CCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECCCceEEEEcCceEEEEechHHH
Confidence            999999987663 33       4799999999999999999999997646899999999999999987     5555566


Q ss_pred             ccee----eccCCCe--eeCCCc----ccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhc--cccccCCccc
Q 006659          234 FDNA----KGRNGGT--YARPAS----VQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRG--RLIRGGSCKA  301 (636)
Q Consensus       234 ~~~~----~~~~g~~--~~~~~~----~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~--~~~~~~~~~~  301 (636)
                      ...+    .++||++  +..+|.    ..+.++.+.|+....+|++|+|||+|||+|||+++++++..  .+....    
T Consensus       229 ~~~~~~~~~l~pGei~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~m~kEI~EqP~~l~~~l~~~~~~~~~~----  304 (640)
T PTZ00295        229 AKYTNEYISLKDGEIAELSLENVNDLYTQRRVEKIPEEVIEKSPEPYPHWTLKEIFEQPIALSRALNNGGRLSGYN----  304 (640)
T ss_pred             HhhCcEEEEeCCCeEEEEECCeEEEEecCCceEEecCChhhhcCCCchHHHHHHHHHHHHHHHHHhhcccceeccC----
Confidence            5443    7999999  334443    35788899999999999999999999999999999999842  221111    


Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCC-cEEEeeccchhcccCCCCCCcEEEEEcCCCCCH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDL-PVTMEIASDLVDRQAPIYREDTAVFVSQSGETA  380 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~  380 (636)
                      ..+..+.++++++.+.++++|+|+|||+|+++|..++++|.+++++ .+.+..++++.+.. ...++|++|++|+||+|+
T Consensus       305 ~~~~~~~~~~~~~~l~~~~~I~i~g~GsS~~aa~~~~~~l~~~~~~~~v~~~~~s~~~~~~-~~~~~~lvI~ISqSGeT~  383 (640)
T PTZ00295        305 NRVKLGGLDQYLEELLNIKNLILVGCGTSYYAALFAASIMQKLKCFNTVQVIDASELTLYR-LPDEDAGVIFISQSGETL  383 (640)
T ss_pred             CccchhhhHHHHHHHhcCCEEEEEEeehHHHHHHHHHHHHHHhCCCCceEEechHHhhhhc-cCCCCCEEEEEeCCCCcH
Confidence            1233344667778889999999999999999999999999999887 47777777776543 346899999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC--CcHHHHHH
Q 006659          381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI--STQARREA  458 (636)
Q Consensus       381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~--~~~~~~~~  458 (636)
                      +++++++.||++|+++|+||++++|+|++.||++|.+.+++|.+++.|++|++++++++++++.++...+  ...+++++
T Consensus       384 d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ag~E~~v~~Tk~~ts~l~~l~lla~~~~~~~~~~~~~~~~~~  463 (640)
T PTZ00295        384 DVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLNAGREVAVASTKAFTSQVTVLSLIALWFAQNKEYSCSNYKCSS  463 (640)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeCCcCcccccccccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988877654  34567888


Q ss_pred             HHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Q 006659          459 IIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVD  537 (636)
Q Consensus       459 ~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~  537 (636)
                      +.++|..+|+.++++++. +++++++++.+.+.++++++|+|.+|++|+|++|||+|++++||++++.+||+|||+++++
T Consensus       464 ~~~~l~~lp~~~~~~l~~~~~~~~~~a~~l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~  543 (640)
T PTZ00295        464 LINSLHRLPTYIGMTLKSCEEQCKRIAEKLKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALID  543 (640)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhc
Confidence            999999999999999984 7889999999999999999999999999999999999999999999999999999999998


Q ss_pred             --CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHH
Q 006659          538 --ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHL  615 (636)
Q Consensus       538 --~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~l  615 (636)
                        +++++|+|.++|...+++.+++++++++|+++++|++.+.. ..  ...+..+.+|.. +.++|+++++|+|+|+|++
T Consensus       544 ~~~~~~VI~i~~~~~~~~~~~~~~~~lk~rga~vi~It~~~~~-l~--~~ad~~i~ip~~-~~l~p~~~~ip~Qllay~l  619 (640)
T PTZ00295        544 KEKNTPVILIILDDEHKELMINAAEQVKARGAYIIVITDDEDL-VK--DFADEIILIPSN-GPLTALLAVIPLQLLAYEI  619 (640)
T ss_pred             CCCCCeEEEEEcCCccHHHHHHHHHHHHHcCCEEEEEecCCcc-cc--ccCCeEEEeCCc-ccchHHHHHHHHHHHHHHH
Confidence              88999999998888899999999999999999999986532 11  124567888874 7899999999999999999


Q ss_pred             HHHcCCCCCCCCCCcceeecC
Q 006659          616 TVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       616 A~~~G~~pd~pr~l~k~v~~~  636 (636)
                      |..+|+|||+||||+|||||.
T Consensus       620 a~~~G~dpD~pr~LaK~vtv~  640 (640)
T PTZ00295        620 AILRGINPDKPRGLAKTVTVD  640 (640)
T ss_pred             HHHcCCCCCCCCCCCccEEeC
Confidence            999999999999999999984

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=100.00  E-value=1.3e-98  Score=847.39  Aligned_cols=583  Identities=42%  Similarity=0.692  Sum_probs=511.4

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.      .+....+..||.+|+|||||++|+++.+++               ++.++|+.|.++++    +
T Consensus         1 MCGI~g~~~~------~~~~~~~~~~l~~l~hRG~d~~Gi~~~~~~---------------~~~~~k~~g~~~~~----~   55 (604)
T PRK00331          1 MCGIVGYVGQ------RNAAEILLEGLKRLEYRGYDSAGIAVLDDG---------------GLEVRKAVGKVANL----E   55 (604)
T ss_pred             CcEEEEEEcC------ccHHHHHHHHHHHHhccCcCcceEEEEeCC---------------EEEEEECCcCHHHH----H
Confidence            9999999953      234577889999999999999999998754               79999999998754    3


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                      +..     ++ ....++++|||+||+|+|.++..|+|||... .++++++|||+|+|+.+||++|...|+.|.++||||+
T Consensus        56 ~~~-----~~-~~~~g~~~igH~R~at~g~~~~~n~qP~~~~-~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEv  128 (604)
T PRK00331         56 AKL-----EE-EPLPGTTGIGHTRWATHGKPTERNAHPHTDC-SGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEV  128 (604)
T ss_pred             hhh-----cc-ccCCCcEEEEEEecCCCCCCccccCCccccC-CCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHH
Confidence            321     11 2457899999999999998878999999975 5789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFD  235 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~  235 (636)
                      |+++|.+.+.. |       .++.+++++++++|+|.|||+++|.+.+++||++||+||||+|..+     +|+..+++.
T Consensus       129 i~~l~~~~~~~-g-------~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~PL~~g~~~~~~~~aSE~~al~~  200 (604)
T PRK00331        129 IAHLIEEELKE-G-------GDLLEAVRKALKRLEGAYALAVIDKDEPDTIVAARNGSPLVIGLGEGENFLASDALALLP  200 (604)
T ss_pred             HHHHHHHHHhh-C-------CCHHHHHHHHHHhccCeeEEEEEecCCCCEEEEEECCCceEEEEcCCeEEEEECHHHHHH
Confidence            99999976542 2       4799999999999999999999998744899999999999999987     556666655


Q ss_pred             ee----eccCCCe--eeCC--------Cc-ccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcc
Q 006659          236 NA----KGRNGGT--YARP--------AS-VQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCK  300 (636)
Q Consensus       236 ~~----~~~~g~~--~~~~--------~~-~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~  300 (636)
                      ..    .++||++  +..+        |. ..+++++.++....++|++|+++|++||.|||+.+++++......     
T Consensus       201 ~~~~~~~l~pg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~eI~eqP~~l~~~~~~~~~~-----  275 (604)
T PRK00331        201 YTRRVIYLEDGEIAVLTRDGVEIFDFDGNPVEREVYTVDWDASAAEKGGYRHFMLKEIYEQPEAIRDTLEGRLDE-----  275 (604)
T ss_pred             hcCEEEEECCCeEEEEECCeEEEEeCCCCcccCceEEEeCCHHHhccCCCchHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence            43    7999999  2222        22 346778899999999999999999999999999999998754321     


Q ss_pred             cccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCH
Q 006659          301 AKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETA  380 (636)
Q Consensus       301 ~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~  380 (636)
                           .+.++..++.+.++++|+|+|+|+|++++..+++++.++.++++.+..++++.+.....+++|++|++|+||+|+
T Consensus       276 -----~~~~~~~~~~l~~a~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~  350 (604)
T PRK00331        276 -----LGEGELADEDLKKIDRIYIVACGTSYHAGLVAKYLIESLAGIPVEVEIASEFRYRDPVLSPKTLVIAISQSGETA  350 (604)
T ss_pred             -----ccchhhhHHHHhcCCEEEEEEeecHHHHHHHHHHHHHHHcCCCEEEEehhhhhccCCCCCCCeEEEEEcCCCCCH
Confidence                 123455577788999999999999999999999999999899988888888866556678999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC-cHHHHHHH
Q 006659          381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS-TQARREAI  459 (636)
Q Consensus       381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~  459 (636)
                      +++++++.||++|+++|+||++++|||++.||++|.+.+++|.+++.|++|+++++++++|+..++...+. +.++++++
T Consensus       351 e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~~~~~~g~~~~~~~~~~  430 (604)
T PRK00331        351 DTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALALAKARGTLSAEEEADL  430 (604)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999889988889999999999999999988876553 45677889


Q ss_pred             HHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCC
Q 006659          460 IDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDEN  539 (636)
Q Consensus       460 ~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~  539 (636)
                      .++|+.+|+.++++++.+++++++++.+.+.+.++++|+|++||+|+|++|||+|++|+||++++++||+|||+++++++
T Consensus       431 ~~~l~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~  510 (604)
T PRK00331        431 VHELRELPALIEQVLDLKEQIEELAEDFADARNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEG  510 (604)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCC
Confidence            99999999999999977788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHc
Q 006659          540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLR  619 (636)
Q Consensus       540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~  619 (636)
                      +++|+|.+++...+++.+++++++++|+++++|+.++.. ..  ...+..+.+|..++.++|+++++|+|+++|++|+.+
T Consensus       511 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~~-~~--~~~~~~~~~~~~~~~~~pl~~~ip~Qlla~~~A~~~  587 (604)
T PRK00331        511 MPVVAIAPNDELYEKTKSNIQEVKARGARVIVIADEGDE-VA--EEADDVIEVPEVHELLAPLLYVVPLQLLAYHVALAR  587 (604)
T ss_pred             ceEEEEEcCchHHHHHHHHHHHHHhCCCEEEEEEcCCcc-cc--ccCCceEECCCCccchhHHHHHHHHHHHHHHHHHHc
Confidence            999999998888888889999999999999999875431 10  123567889988889999999999999999999999


Q ss_pred             CCCCCCCCCCcceeecC
Q 006659          620 GYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       620 G~~pd~pr~l~k~v~~~  636 (636)
                      |+|||.||||+||||||
T Consensus       588 G~~pd~pr~l~K~v~~~  604 (604)
T PRK00331        588 GTDVDKPRNLAKSVTVE  604 (604)
T ss_pred             CCCCCCCCCCCCeEEeC
Confidence            99999999999999997

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=100.00  E-value=1.7e-97  Score=838.77  Aligned_cols=586  Identities=41%  Similarity=0.687  Sum_probs=507.8

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||+|+++.      ......+..||.+|+|||||++|+++.+++               .+.++|+.|.++++    ++
T Consensus         1 CGI~g~~~~------~~~~~~~~~~l~~l~hRG~ds~Gi~~~~~~---------------~~~~~k~~g~~~~~----~~   55 (607)
T TIGR01135         1 CGIVGYIGQ------RDAVPILLEGLKRLEYRGYDSAGIAVVDEG---------------KLFVRKAVGKVQEL----AN   55 (607)
T ss_pred             CeEEEEECC------ccHHHHHHHHHHHHhccCcccceEEEEeCC---------------EEEEEECCcCHHHH----Hh
Confidence            999999952      234477889999999999999999998653               68999999998764    34


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI  161 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i  161 (636)
                      ...     + ....++++|||+||+|+|..+..|+|||... .++++++|||+|+|+.+||++|...|+.|.++||||+|
T Consensus        56 ~~~-----~-~~~~~~~~igH~R~at~g~~~~~n~qP~~~~-~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi  128 (607)
T TIGR01135        56 KLG-----E-KPLPGGVGIGHTRWATHGKPTEENAHPHTDE-GGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVI  128 (607)
T ss_pred             hhh-----c-ccCCccEEEEEeeccCCCCCCccCCCCcCcC-CCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHH
Confidence            321     1 1356899999999999998778899999876 67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccce
Q 006659          162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFDN  236 (636)
Q Consensus       162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~~  236 (636)
                      +++|.+.+.. +       .++.+++++++++|+|+|||+++|...+++||++||+||||+|.++     +||..+++..
T Consensus       129 ~~l~~~~~~~-~-------~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~~PL~~~~~~~~~~~aSE~~al~~~  200 (607)
T TIGR01135       129 AHLIEEYLRE-G-------GDLLEAVQKALKQLRGAYALAVLHADHPETLVAARSGSPLIVGLGDGENFVASDVTALLPV  200 (607)
T ss_pred             HHHHHHHHhc-C-------CCHHHHHHHHHHHhcCceEEEEEecCCCCEEEEEECCCceEEEECCCeEEEEEChHHHHhh
Confidence            9999976532 1       4799999999999999999999997644679999999999999987     5666666654


Q ss_pred             e----eccCCCe--eeCCC--------c-ccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCccc
Q 006659          237 A----KGRNGGT--YARPA--------S-VQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKA  301 (636)
Q Consensus       237 ~----~~~~g~~--~~~~~--------~-~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~  301 (636)
                      +    .++||++  +..+|        . ..+.+++.+|.....+|++|+++|++||.|||+.+++++........    
T Consensus       201 ~~~~~~l~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~eI~eqP~~l~~~l~~~~~~~~----  276 (607)
T TIGR01135       201 TRRVIYLEDGDIAILTRDGVRIYNFEGAPVSREVRTIDWDLDAAEKGGYRHFMLKEIYEQPRALRDTLEGRISEAG----  276 (607)
T ss_pred             CCEEEEeCCCeEEEEECCeeEEEeCCCCccccceEEEeCCHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhhhcc----
Confidence            4    7999999  22222        2 35678899999999999999999999999999999999875332111    


Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e  381 (636)
                      ..+  +.+. ..+.+.++++|+|+|+|+|++++..+++++.++.++++.+..++++.+.....+++|++|+||+||+|++
T Consensus       277 ~~~--~~~~-~~~~l~~~~~I~~~G~GsS~~aa~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e  353 (607)
T TIGR01135       277 VVL--EELG-AEELLKNVDRIQIVACGTSYHAGLVAKYLIERLAGIPVEVEIASEFRYRKPVVDKDTLVIAISQSGETAD  353 (607)
T ss_pred             cch--hhcc-chhHhccCCEEEEEEeechHHHHHHHHHHHHHhcCCCEEEecHHHHhhcCCCCCCCCEEEEEeCCCCCHH
Confidence            001  1111 1245789999999999999999999999999998999988888888665556789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHH
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS-TQARREAII  460 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~~  460 (636)
                      ++++++.||++|+++|+||++++|||+++||++|.+++++|.+++.|++|+++++++++|+..++...+. ..++++++.
T Consensus       354 ~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~l~~~~g~~~~~~~~~~~  433 (607)
T TIGR01135       354 TLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALKLAKARGTLSAEEEAELV  433 (607)
T ss_pred             HHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecCCCccchhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999988888889999999999999999988876553 556678888


Q ss_pred             HHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCC
Q 006659          461 DGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENL  540 (636)
Q Consensus       461 ~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~  540 (636)
                      +++..+|+.++++++.+++++++++.+.+.++++++|+|++||+|+|+||||+|++|+||++++++||+|||++++++++
T Consensus       434 ~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~  513 (607)
T TIGR01135       434 DGLRRLPALVEQVLKLEESIAELAERYADKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGL  513 (607)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCC
Confidence            99999999999999876889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 006659          541 PILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRG  620 (636)
Q Consensus       541 ~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G  620 (636)
                      ++|+|.++|+..+++.+++++++++|+++++|++++.....  ...+..+.+|..++.++|+++++|+|+|+|++|+.+|
T Consensus       514 ~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~~~~~--~~~~~~i~~p~~~~~l~pl~~~~p~Qlla~~~A~~~G  591 (607)
T TIGR01135       514 PVVAIAPKDSLFEKTKSNVEEVKARGARVIVFADEDDEFLE--SVADDVIKLPEVEELLAPIVYTVPLQLLAYHIALAKG  591 (607)
T ss_pred             CEEEEEeCchHHHHHHHHHHHHHHcCCeEEEEECCCccccc--ccCCcEEECCCCCccchHHHHHHHHHHHHHHHHHHcC
Confidence            99999998888899999999999999999999987542110  1234678899888899999999999999999999999


Q ss_pred             CCCCCCCCCcceeecC
Q 006659          621 YNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       621 ~~pd~pr~l~k~v~~~  636 (636)
                      +|||.||||+||||||
T Consensus       592 ~dpd~pr~L~K~v~~e  607 (607)
T TIGR01135       592 TDVDKPRNLAKSVTVE  607 (607)
T ss_pred             CCCCCCCCCCCeEeeC
Confidence            9999999999999998

The member from Methanococcus jannaschii contains an intein.

>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional

Probab=100.00  E-value=1.6e-51  Score=431.19  Aligned_cols=326  Identities=21%  Similarity=0.306  Sum_probs=279.7

Q ss_pred             HHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHc--CCCeEEEEeechhHHHHHHHHHHHHHhcCCcE
Q 006659          272 HYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIR--RSRRIVFIGCGTSYNAALAARPILEELSDLPV  349 (636)
Q Consensus       272 ~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~--~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~  349 (636)
                      ..|+.++.++|..+++.+....             +.++++++.+.  ++++|+|+|||+|+++|..+++++.++.++++
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~-------------~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v   74 (340)
T PRK11382          8 TVDFLVTENMVQEVEKVLSHDV-------------PLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQV   74 (340)
T ss_pred             HHHHHHHhhchHHHHHHHHhhh-------------HHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCe
Confidence            4599999999999999986533             34677888776  49999999999999999999999999999888


Q ss_pred             EEeeccchhcccC-CCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch
Q 006659          350 TMEIASDLVDRQA-PIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST  428 (636)
Q Consensus       350 ~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t  428 (636)
                      .+..++++.+... .++++|++|+||+||+|++++++++.||++|+++|+||++++|||++.||++|.+.+|+       
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~-------  147 (340)
T PRK11382         75 YAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADC-------  147 (340)
T ss_pred             EEeccHHHHhcCCcCCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCCc-------
Confidence            8888888876544 46899999999999999999999999999999999999999999999999999998765       


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHH-H
Q 006659          429 KAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATA-L  506 (636)
Q Consensus       429 ~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A-~  506 (636)
                       ++..++..+.+++..+..... ..+.++++.+.++.+|+.++++++. .++.+++++.+...+.++++|+|++||+| .
T Consensus       148 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~~a~~~~~~~~~~~lG~G~~y~~A~~  225 (340)
T PRK11382        148 -IWEIHLLLCYSVVLEMITRLA-PNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGPLRPLGYK  225 (340)
T ss_pred             -hHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCCCHHHHHH
Confidence             222223333333333332222 2345678889999999999888874 67788888888899999999999999998 8


Q ss_pred             HHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCc
Q 006659          507 EGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGS  586 (636)
Q Consensus       507 e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~  586 (636)
                      |++|||+|++|+||++++++||+|||++++++++++|+|.++++++++..+++++++++|+++++|+..+   .      
T Consensus       226 E~alKl~E~~~i~a~~~~~~Ef~HGP~~li~~~~~vi~l~~~~~~~~~~~~~~~~l~~~~~~v~~I~~~~---~------  296 (340)
T PRK11382        226 EGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERAINFVKQRTDNVIVIDYAE---I------  296 (340)
T ss_pred             HHHHHHHHHhhhhcccccHHHhccChHHHhcCCceEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEECCC---C------
Confidence            9999999999999999999999999999999999999999988889999999999999999999997532   1      


Q ss_pred             ceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCccee
Q 006659          587 CRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSV  633 (636)
Q Consensus       587 ~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v  633 (636)
                           .|.+++++.|+++++|+|+++|++|..||+|||+|||+.--|
T Consensus       297 -----~~~~~~~l~pl~~~ip~Qlla~~lA~~rG~d~d~pR~~~~~~  338 (340)
T PRK11382        297 -----SQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYYGGLV  338 (340)
T ss_pred             -----CCCcchhHhHHHHHHHHHHHHHHHHHHhCcCCCCCCCccccc
Confidence                 134567899999999999999999999999999999998654

>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=7.9e-49  Score=402.26  Aligned_cols=331  Identities=32%  Similarity=0.494  Sum_probs=277.1

Q ss_pred             HHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcC--CCeEEEEeechhHHHHHHHHHHHHHhcCCcE
Q 006659          272 HYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRR--SRRIVFIGCGTSYNAALAARPILEELSDLPV  349 (636)
Q Consensus       272 ~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~--~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~  349 (636)
                      ++|++||.+||..+.+.+....             +.+.++.+.++.  .++|+++|||+|++++..+++++++..+..+
T Consensus         3 ~~m~~e~~~~p~~~~~~~~~~~-------------~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~   69 (340)
T COG2222           3 TLMLREIEQQPAVVARLLEANR-------------AVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLV   69 (340)
T ss_pred             chhHHHHHhhHHHHHHHHHhhh-------------hHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCcee
Confidence            4799999999999999876532             234555655554  4699999999999999999999998888889


Q ss_pred             EEeeccchhcccCC-CCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch
Q 006659          350 TMEIASDLVDRQAP-IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST  428 (636)
Q Consensus       350 ~~~~~~e~~~~~~~-~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t  428 (636)
                      ....++++...... ..++.++|++|+||+|+|++.+++.||+.|+.+|+||+..+|||++.||+.|.+..++|.++..|
T Consensus        70 ~~~~~se~~~~~~~~~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~~~a~T  149 (340)
T COG2222          70 AAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEEASVAAT  149 (340)
T ss_pred             eeechhHHhccCccccCCCeEEEEEeCCCCCHHHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeeccCCchHHHHHH
Confidence            99999999776654 56778999999999999999999999999999999999999999999999999999999888999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHH
Q 006659          429 KAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEG  508 (636)
Q Consensus       429 ~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~  508 (636)
                      ++|+++++....+...+....        +....+..++.......  ++..++++..+.+.+++|++|+|++||+|+|.
T Consensus       150 ~s~~~~~~a~l~~~a~~~~~~--------~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~lGsG~~~g~A~e~  219 (340)
T COG2222         150 KSFTASLLALLALLAEYDGDA--------QLLAALPDLPLEAAKAL--EEDAQEFAEEYADEDRIYTLGSGPLYGAAYEA  219 (340)
T ss_pred             HHHHHHHHHHHHHHhhhcccc--------hhhhhhhcchHHHHHHh--hHHHHHHHHHhcCCCEEEEECCcccHHHHHHH
Confidence            999998877665555443221        22223444444433333  45566789999999999999999999999999


Q ss_pred             HHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcce
Q 006659          509 ALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCR  588 (636)
Q Consensus       509 alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~  588 (636)
                      +||++|++|+|+++++..||+|||++++++++||++|.++|++++...+++++++++|++|++|+.++...         
T Consensus       220 aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~~~~~~~ga~v~vi~a~~~~~---------  290 (340)
T COG2222         220 ALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKNYGAKVLVIDAKDAAL---------  290 (340)
T ss_pred             HHHHHHHccccceeeeccccccCcHHHcCCCceEEEEecCCcchhHHHHHHHHHHhcCCeEEEEcCccccc---------
Confidence            99999999999999999999999999999999999999999999999999999999999999999876321         


Q ss_pred             EEEcCCCCcch-hhHHHHHHHHHHHHHHHHHcCCCCCCCCC--Ccceee
Q 006659          589 VIEVPQVEDCL-QPVINIVPLQLLAYHLTVLRGYNVDQPRN--LAKSVT  634 (636)
Q Consensus       589 ~~~~p~~~~~~-~~~~~~v~~q~la~~lA~~~G~~pd~pr~--l~k~v~  634 (636)
                      .+..+...+++ .++++++++|++++++|..||+|||+|||  +.|+|.
T Consensus       291 ~~~~~~~~~~l~~~~~~~~v~~~~~~~~a~~rg~~pd~pr~~~~~kv~~  339 (340)
T COG2222         291 DLIDQRVRHDLAPPLLSLVVAQRLAYALAVARGHNPDTPRYYGLVKVTR  339 (340)
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeeee
Confidence            11222333444 45557789999999999999999999999  888875

>TIGR02815 agaS_fam putative sugar isomerase, AgaS family

Probab=100.00  E-value=1.7e-48  Score=412.12  Aligned_cols=337  Identities=20%  Similarity=0.226  Sum_probs=264.1

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHH--cCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEE
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI--RRSRRIVFIGCGTSYNAALAARPILEELSDLPVT  350 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l--~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~  350 (636)
                      +..+||.|||+.++++.......          .+.++++++.+  +..++|+|+|||+|+++|..++++++++.++++.
T Consensus         4 ~t~~EI~eqP~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~   73 (372)
T TIGR02815         4 HTAREIRQQPALWRRLLTIIQAL----------RPALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVS   73 (372)
T ss_pred             hHHHHHHHChHHHHHHHHHHHHh----------HHHHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEE
Confidence            68899999999998754321111          13455666654  4578999999999999999999999999999999


Q ss_pred             EeeccchhcccCC-C--CCCcEEEEEcCCCCCHHHHHHHHHHHHc--CCeEEEEEcCCCCccccccC-----eeEEcCCC
Q 006659          351 MEIASDLVDRQAP-I--YREDTAVFVSQSGETADTLQALEYASEN--GALCVGITNTVGSAIARKTH-----CGVHINAG  420 (636)
Q Consensus       351 ~~~~~e~~~~~~~-~--~~~dlvI~iS~SG~t~e~i~al~~ak~~--g~~vi~IT~~~~s~La~~ad-----~~l~~~~~  420 (636)
                      +..++++.+.... .  ++++++|++||||+|+|++++++.||++  |+++|+||++.+|+|++.||     +.++++.+
T Consensus        74 ~~~~~e~~~~~~~~~~~~~~~lvi~iSqSGeT~etv~a~~~ak~~~~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag  153 (372)
T TIGR02815        74 AVPTTDLVSNPRQYLDPTRPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALYRNAINRSNAFALLMPAE  153 (372)
T ss_pred             EEeCcccccccccccCCCCCeEEEEEeCCcCcHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHhhcccCceeEEEccCC
Confidence            9999997543322 2  3579999999999999999999999998  89999999999999999999     88988887


Q ss_pred             -CcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHh--cCCCeEEEEe
Q 006659          421 -AEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQL--IAEQSLLVFG  497 (636)
Q Consensus       421 -~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l--~~~~~~~~lG  497 (636)
                       +|.+++.|++|+++++++.++...   ... ..+    .   +..+++....+++..+ ..+.++.+  .+.++++++|
T Consensus       154 ~~e~gva~Tksft~~l~al~~l~~~---~~~-~~~----~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lG  221 (372)
T TIGR02815       154 SNDRSFAMTSSFSCMTLATLAVLGP---ETI-ESQ----T---EERFADAALCILESGQ-WDFSEGVLGYAPWERIVYLG  221 (372)
T ss_pred             CccceeeeHHHHHHHHHHHHHHHcc---ccC-CHH----H---HHHHHHHHHHHHhhhH-HHHHHHHHhhcCCCeEEEEe
Confidence             789999999999988777666321   111 111    1   2334444444443322 33344443  5889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcccc--ccccccccccccccccccCCCCeEEEEeCCcc-hHHHHHHHHHHHhcC--CeEEEE
Q 006659          498 RGYNYATALEGALKVKEVALMH--SEGILAGEMKHGPLALVDENLPILVIATRDAC-FSKQQSVIQQLHARK--GRLIVM  572 (636)
Q Consensus       498 ~G~~~~~A~e~alKl~E~~~~~--a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~-~~~~~~~~~~~~~~g--~~v~vi  572 (636)
                      +|++||+|+|+||||+|+++.+  +.++..+||+|||++++++++++|+|.++|+. +....+.+++++++|  +++++|
T Consensus       222 rG~~y~~A~E~ALKlkE~~~~~~~~~~~~~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~l~e~~~~g~~~~v~~I  301 (372)
T TIGR02815       222 SGGLQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVSSDPYTRQYDLDLLAELRRDNQAGRVVAI  301 (372)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHheeeccccccccChHHHhcCCCeEEEEEcCchhhhhhhHHHHHHHHhcCCCceEEEE
Confidence            9999999999999999999944  66667899999999999999999999987763 323357888998885  999999


Q ss_pred             ecCCCCcCCCCCCcceEEEcCCC---CcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeec
Q 006659          573 CSKGDAASIFPGGSCRVIEVPQV---EDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTT  635 (636)
Q Consensus       573 ~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~  635 (636)
                      +.++....    ..+..+.+|..   ++.+.++.+++|+|+|||++|..+|+|||.||+++-+.+|
T Consensus       302 ~~~~~~~~----~~~~~i~i~~~~~~~~~~~~~~~vip~QllA~~~A~~~G~dpD~P~~~~~~~~~  363 (372)
T TIGR02815       302 SAESSDIV----AAGDHFILPPSRHFIDVELAFPYLIFAQTLAFEQSLALGNTPDNPCPTGEVNRV  363 (372)
T ss_pred             EcCCcccc----cCCCEEEeCCCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCceeee
Confidence            87632111    12345777754   4577899999999999999999999999999999877665

Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.

>PRK06388 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=4.5e-39  Score=344.84  Aligned_cols=206  Identities=24%  Similarity=0.331  Sum_probs=176.0

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++      ..++...++.+|.+||||||||+||++.+++               .+.++|+.|.+++    +|
T Consensus        19 mCGI~G~~~------~~~~~~~~~~gL~~LqhRGqdsaGIa~~d~~---------------~i~~~K~~Glv~~----vf   73 (474)
T PRK06388         19 DCAVVGFKG------GINAYSPIITALRTLQHRGQESAGMAVFDGR---------------KIHLKKGMGLVTD----VF   73 (474)
T ss_pred             CCeEEEEEC------CcchHHHHHHHHHHhhCcCcCcceEEEEcCC---------------EEEEEecCcchHH----Hh
Confidence            999999995      3356788999999999999999999999764               6899999998875    56


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++..       ..++|+++|||+||+|+|..+..|+|||... ..+++++||||+|+|+.+||++|...|+.|.++||||
T Consensus        74 ~~~~-------~~l~G~~gIGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtE  146 (474)
T PRK06388         74 NPAT-------DPIKGIVGVGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTE  146 (474)
T ss_pred             hhhh-------hcCCCcEEEeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHH
Confidence            5421       2467999999999999998888999999855 4678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI  231 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~  231 (636)
                      +|++++.+.+.+         .++.+++++++++|+|+|||++++   .+.|+++||+   |||++|..+     +||..
T Consensus       147 Vi~~li~~~~~~---------~~~~eai~~~~~~l~G~ya~vi~~---~~~l~a~RDp~GiRPL~~G~~~~~~~~ASE~~  214 (474)
T PRK06388        147 VMLAELSRNISK---------YGLKEGFERSMERLRGAYACALMI---NDRLYAIRDPNGIRPLVLGKNFDGYIIASESC  214 (474)
T ss_pred             HHHHHHHHHHhc---------CCHHHHHHHHHHhccCceeEEEEE---CCEEEEEECCCCCCceEEEecCCEEEEEEChH
Confidence            999999876643         258999999999999999999987   5899999999   899999987     56666


Q ss_pred             ccccee-----eccCCCe--eeCCCc
Q 006659          232 LKFDNA-----KGRNGGT--YARPAS  250 (636)
Q Consensus       232 ~~~~~~-----~~~~g~~--~~~~~~  250 (636)
                      |+...+     .++||++  +..+|.
T Consensus       215 Al~~~~~~~i~~l~PGeiv~i~~~g~  240 (474)
T PRK06388        215 AIDALSGTTIKNVEPGEVVEVFDNGY  240 (474)
T ss_pred             HHHhccCcEEEEeCCCEEEEEECCce
Confidence            665433     7999999  344553

>PRK07272 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=1.5e-38  Score=341.04  Aligned_cols=207  Identities=26%  Similarity=0.400  Sum_probs=173.7

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++      ..++...++.+|.+||||||||+||++.+++               .+.++|+.|.+++    +|
T Consensus        11 mCGI~Gi~~------~~~~~~~~~~gL~~LqHRGqdsaGIa~~d~~---------------~i~~~K~~Glv~~----vf   65 (484)
T PRK07272         11 ECGVFGIWG------HPDAAQLTYFGLHSLQHRGQEGAGIVSNDNG---------------KLKGHRDLGLLSE----VF   65 (484)
T ss_pred             cCeEEEEEC------CccHHHHHHHHHHHhcccCCccceEEEEeCC---------------eeEEEecCCcccc----hh
Confidence            999999995      3356788999999999999999999999764               7999999998875    55


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++..  .+   ..++|+++|||+||+|+|.++..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus        66 ~~~~--~l---~~l~G~~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE  140 (484)
T PRK07272         66 KDPA--DL---DKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTE  140 (484)
T ss_pred             cchh--hH---hcCCCcEEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHH
Confidence            5321  11   2467999999999999998888999999874 4678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Cccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVS  230 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~  230 (636)
                      +|++++.+...          .++.+++++++++|+|+|||++++   .++|+++|||   ||||+|..+      +||.
T Consensus       141 VI~~Li~~~~~----------~~~~eai~~~~~~l~G~ya~~i~~---~~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~  207 (484)
T PRK07272        141 ILMHLIRRSHN----------PTFMGKLKEALNTVKGGFAYLLLT---EDKLIAALDPNGFRPLSIGKMKNGAYVVASET  207 (484)
T ss_pred             HHHHHHHHHcC----------CCHHHHHHHHHHHccCceeEEEEE---CCEEEEEECCCCCCcEEEEEecCCEEEEEECH
Confidence            99999986431          379999999999999999999998   5799999997   999999863      5555


Q ss_pred             cccc----cee-eccCCCe--eeCCCc
Q 006659          231 ILKF----DNA-KGRNGGT--YARPAS  250 (636)
Q Consensus       231 ~~~~----~~~-~~~~g~~--~~~~~~  250 (636)
                      .|+.    ++. .++||++  +..+|.
T Consensus       208 ~Al~~ig~~~ir~l~PGEiv~i~~~g~  234 (484)
T PRK07272        208 CAFDVVGAEWVRDVQPGEIVIIDDEGI  234 (484)
T ss_pred             HHHhccCCceEEEcCCCeEEEEECCce
Confidence            5652    222 7999999  344453

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type

Probab=100.00  E-value=6.7e-38  Score=306.93  Aligned_cols=203  Identities=43%  Similarity=0.757  Sum_probs=170.6

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++..      .....+..|+.+|||||||++|+++.++.               .+.++|+.|.++++    ++
T Consensus         1 CGI~G~~~~~------~~~~~~~~~l~~l~hRG~d~~Gi~~~~~~---------------~~~~~k~~g~~~~~----~~   55 (215)
T cd00714           1 CGIVGYIGKR------EAVDILLEGLKRLEYRGYDSAGIAVIGDG---------------SLEVVKAVGKVANL----EE   55 (215)
T ss_pred             CEEEEEEcCc------cHHHHHHHHHHHHhccCcCcceEEEEeCC---------------EEEEEEcCccHHHH----HH
Confidence            9999999632      23477889999999999999999998653               68999999988753    34


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI  161 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i  161 (636)
                      ....      ...+++++|||+||+|.|..+..|+|||... .++++++|||+|+|+.+||++|...|+.+.+.||||++
T Consensus        56 ~~~~------~~~~~~~~igH~R~at~g~~~~~n~qPf~~~-~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi  128 (215)
T cd00714          56 KLAE------KPLSGHVGIGHTRWATHGEPTDVNAHPHRSC-DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVI  128 (215)
T ss_pred             Hhhh------ccCCccEEEEEEEccCCCCCCccCCCCCCcC-CCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHH
Confidence            3211      1346889999999999998778899999976 57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccce
Q 006659          162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFDN  236 (636)
Q Consensus       162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~~  236 (636)
                      +++|.+.+.. +       .++++++++++++|+|+|||+++|...+++|+++||+||||+|..+     +||..++...
T Consensus       129 ~~l~~~~~~~-~-------~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l~~~RD~~PL~~~~~~~~~~~aSE~~al~~~  200 (215)
T cd00714         129 AHLIEYYYDG-G-------LDLLEAVKKALKRLEGAYALAVISKDEPDEIVAARNGSPLVIGIGDGENFVASDAPALLEH  200 (215)
T ss_pred             HHHHHHHHhc-C-------CCHHHHHHHHHHHhccceEEEEEEeCCCCEEEEEECCCCcEEEEcCCeEEEEECHHHHHHh
Confidence            9999876532 1       4799999999999999999999998644699999999999999876     5666666543


Q ss_pred             e----eccCCCe
Q 006659          237 A----KGRNGGT  244 (636)
Q Consensus       237 ~----~~~~g~~  244 (636)
                      +    .++||++
T Consensus       201 ~~~~~~~~~~~~  212 (215)
T cd00714         201 TRRVIYLEDGDI  212 (215)
T ss_pred             cCEEEEECCCCE
Confidence            3    7888887

This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.

>PRK07631 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=3.8e-38  Score=337.22  Aligned_cols=206  Identities=26%  Similarity=0.375  Sum_probs=172.7

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++      ..+....++.+|.+||||||||+||++.+++               .+.++|+.|.+++    +|
T Consensus        11 mCGI~Gi~~------~~~~~~~~~~gL~~LqHRG~dsaGia~~~~~---------------~~~~~k~~Glv~~----vf   65 (475)
T PRK07631         11 ECGVFGIWG------HEEAAQITYYGLHSLQHRGQEGAGIVVTDGG---------------KLSAHKGLGLVTE----VF   65 (475)
T ss_pred             CCcEEEEEC------CchhHHHHHHHHHHhcCCCcccCeEEEEcCC---------------EEEEEEcccccch----hh
Confidence            999999995      3356677889999999999999999998764               6889999998875    45


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++.   .+   ..+.|+++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus        66 ~~~---~l---~~l~G~~gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE  139 (475)
T PRK07631         66 QNG---EL---DALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTE  139 (475)
T ss_pred             chh---hh---hccCCCEEEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHH
Confidence            431   11   2467999999999999999888999999754 4678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI  231 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~  231 (636)
                      +|+++|.+...          .++.+++++++++|+|+|||++++   .+.|+++|||   |||++|..+     +||..
T Consensus       140 Vi~~Li~~~~~----------~~~~eai~~~~~~l~G~yalvi~~---~~~l~aaRDp~GirPL~~G~~~~~~~~ASE~~  206 (475)
T PRK07631        140 VLAHLIKRSGA----------PTLKEQIKNALSMLKGAYAFLLMT---ETELYVALDPNGLRPLSIGRLGDAYVVASETC  206 (475)
T ss_pred             HHHHHHHHHcC----------CCHHHHHHHHHHhCCCCceeeEEe---CCEEEEEECCCCCCCEEEEEeCCEEEEEeChH
Confidence            99999985331          379999999999999999999999   5789999999   999999987     55555


Q ss_pred             ccc----cee-eccCCCe--eeCCCc
Q 006659          232 LKF----DNA-KGRNGGT--YARPAS  250 (636)
Q Consensus       232 ~~~----~~~-~~~~g~~--~~~~~~  250 (636)
                      |+.    ++. .++||++  +..+|.
T Consensus       207 Al~~~g~~~ir~v~PGeiv~i~~~g~  232 (475)
T PRK07631        207 AFDVIGATYEREVEPGELLIINDEGM  232 (475)
T ss_pred             HHhhcCcceEEEcCCCeEEEEECCcE
Confidence            652    222 7999999  344553

>PRK07349 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=7.6e-38  Score=336.37  Aligned_cols=203  Identities=23%  Similarity=0.409  Sum_probs=172.0

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.+     .++...++.+|.+||||||||+||++.+++               .+.++|+.|.+++    +|
T Consensus        33 mCGI~Gi~~~~-----~~~~~~~~~gL~~LqHRGqdsaGIa~~~~~---------------~~~~~K~~Glv~~----vf   88 (500)
T PRK07349         33 ACGVFGVYAPG-----EEVAKLTYFGLYALQHRGQESAGIATFEGD---------------KVHLHKDMGLVSQ----VF   88 (500)
T ss_pred             CCeEEEEECCC-----cCHHHHHHHHHHHhcccCcCcceEEEEeCC---------------EEEEEecCcchhh----hc
Confidence            99999999532     246677889999999999999999999764               6899999998875    55


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++.   .+   ..+.|+++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.++||||
T Consensus        89 ~~~---~l---~~l~G~i~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE  162 (500)
T PRK07349         89 DED---IL---EELPGDLAVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSE  162 (500)
T ss_pred             chh---hh---hcCCCCEEEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHH
Confidence            531   11   2467999999999999998888999999876 4578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec------c---C
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK------D---G  227 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~------~---~  227 (636)
                      +|+++|.+.+.. +       .++.+++++++++|+|+|||++++   +++||++||+   |||++|..      .   +
T Consensus       163 Vi~~li~~~~~~-~-------~~~~eai~~~~~~l~G~ya~vi~~---~~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~A  231 (500)
T PRK07349        163 MIAFAIAQAVDA-G-------KDWLEAAISAFQRCQGAFSLVIGT---PEGLMGVRDPNGIRPLVIGTLGEGGPGRYVLA  231 (500)
T ss_pred             HHHHHHHHHHhc-C-------CCHHHHHHHHHHHhhhhEEEEEEe---CCEEEEEECCCCCCCeEEEecccCCCCeEEEE
Confidence            999999876643 1       479999999999999999999987   6899999999   89999986      2   4


Q ss_pred             ccccccc----cee-eccCCCe
Q 006659          228 AVSILKF----DNA-KGRNGGT  244 (636)
Q Consensus       228 ~~~~~~~----~~~-~~~~g~~  244 (636)
                      ||..|+.    ++. .++||++
T Consensus       232 SE~~Al~~lg~~~ir~v~PGei  253 (500)
T PRK07349        232 SETCALDIIGAEYLRDVEPGEL  253 (500)
T ss_pred             eccchhhhcCCceEEEeCCCeE
Confidence            5555552    222 7999999

>PRK06781 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=1.4e-37  Score=333.68  Aligned_cols=200  Identities=27%  Similarity=0.398  Sum_probs=170.2

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.      .+....++.+|.+||||||||+||++.++.               .+.++|+.|.+++    +|
T Consensus        11 mCGI~Gi~~~------~~~~~~~~~gL~~LqhRG~dsaGia~~d~~---------------~~~~~k~~GlV~~----vf   65 (471)
T PRK06781         11 ECGVFGIWGH------ENAAQVSYYGLHSLQHRGQEGAGIVVNNGE---------------KIVGHKGLGLISE----VF   65 (471)
T ss_pred             cCeEEEEEcC------ccHHHHHHHHHHHhhCcCcCcceEEEEeCC---------------EEEEEecCcchhh----hc
Confidence            9999999953      345677889999999999999999998754               6889999998875    45


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++.   .+   ..++|+++|||+||||+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus        66 ~~~---~l---~~l~g~~~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE  139 (471)
T PRK06781         66 SRG---EL---EGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTE  139 (471)
T ss_pred             chh---hH---hcCCCCEEEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHH
Confidence            431   12   2467999999999999998888999999754 4678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI  231 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~  231 (636)
                      +|+++|.+.+.          .++.+++++++++|+|+|||++++   +++++++||+   |||++|..+     +||..
T Consensus       140 vI~~Li~~~~~----------~~~~eai~~~~~~l~G~ya~vi~~---~~~l~aaRD~~GirPL~~g~~~~~~~~ASE~~  206 (471)
T PRK06781        140 VLLHLIKRSTK----------DSLIESVKEALNKVKGAFAYLLLT---GNEMIVALDPNGFRPLSIGKMGDAYVVASETC  206 (471)
T ss_pred             HHHHHHHHHcC----------CCHHHHHHHHHHhCCCcEEEEEEE---CCEEEEEECCCCCCCeEEEEECCEEEEEECch
Confidence            99999985431          379999999999999999999999   5799999999   999999987     55555


Q ss_pred             cccc----ee-eccCCCe
Q 006659          232 LKFD----NA-KGRNGGT  244 (636)
Q Consensus       232 ~~~~----~~-~~~~g~~  244 (636)
                      ++..    +. .++||++
T Consensus       207 Al~~~g~~~ir~v~pGei  224 (471)
T PRK06781        207 AFDVVGATYIRDVEPGEL  224 (471)
T ss_pred             HhhhcCCcEEEEeCCCEE
Confidence            5542    22 7999999

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.1e-37  Score=318.36  Aligned_cols=206  Identities=29%  Similarity=0.442  Sum_probs=177.7

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++++.    .++...++.+|.+||||||+++||++.++.               ++..+|..|.+++    ||
T Consensus         4 ~CGV~Gi~~~~~----~~a~~~~y~gL~aLQHRGQeaAGI~~~dg~---------------~~~~~K~~GLV~d----vF   60 (470)
T COG0034           4 MCGVFGIWGHKD----NNAAQLTYYGLYALQHRGQEAAGIAVADGK---------------RFHTHKGMGLVSD----VF   60 (470)
T ss_pred             cceEEEEecCCc----cchHHHHHHHHHHHhhCCcccccEEEEcCc---------------eEEEEecCccchh----hc
Confidence            999999997541    347789999999999999999999999875               7999999998884    77


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++..     +...+.|+++|||+||+|.|..+..|+|||..+ .++.++++|||+|.|..+||++|.+.|..|.+.+|||
T Consensus        61 ~~~~-----~~~~l~G~~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsE  135 (470)
T COG0034          61 NERD-----LLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSE  135 (470)
T ss_pred             Cchh-----hhhhccCcceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHH
Confidence            6521     112456789999999999999999999999988 6668999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI  231 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~  231 (636)
                      +++++|.+.+.+         .++.++++++++++.|+|+++++.   .+.|+++|||   |||++|..+     .++++
T Consensus       136 vll~l~a~~~~~---------~~~~~a~~~~~~~v~G~ys~v~~~---~~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt  203 (470)
T COG0034         136 VLLHLLARELDE---------DDIFEAVKEVLRRVKGAYALVALI---KDGLIAVRDPNGIRPLVLGKLGDGFYVVASET  203 (470)
T ss_pred             HHHHHHHhhccc---------ccHHHHHHHHHhhcCCcEEEEEEE---CCeEEEEECCCCCccceeeecCCCCEEEEech
Confidence            999999976643         479999999999999999999999   6799999999   999999984     34455


Q ss_pred             cccce------eeccCCCeee
Q 006659          232 LKFDN------AKGRNGGTYA  246 (636)
Q Consensus       232 ~~~~~------~~~~~g~~~~  246 (636)
                      +.|+.      ..++||+++.
T Consensus       204 ~Ald~iGa~~vRdv~pGE~v~  224 (470)
T COG0034         204 CALDILGAEFVRDVEPGEAVI  224 (470)
T ss_pred             hhhhcccceEEEecCCceEEE
Confidence            55552      2899999933

>PRK08341 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=2e-37  Score=329.99  Aligned_cols=198  Identities=23%  Similarity=0.352  Sum_probs=168.4

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++       .++...++.+|.+||||||||+||++.++                .+.++|+.|.+++    +|
T Consensus         4 ~CGI~G~~~-------~~~~~~l~~gL~~LqhRG~dsaGIa~~~~----------------~~~~~K~~Glv~~----vf   56 (442)
T PRK08341          4 KCGIFAAYS-------ENAPKKAYYALIALQHRGQEGAGISVWRH----------------RIRTVKGHGLVSE----VF   56 (442)
T ss_pred             ccEEEEEEC-------CCcHHHHHHHHHHhhccCcccceEEEECC----------------cEEEEecCCchhh----hh
Confidence            999999995       23567899999999999999999999973                5899999998775    55


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++..     + ..++|+++|||+||+|+|.  ..|+|||... ..++++++|||+|+|+.+||++|...|+.|.++||||
T Consensus        57 ~~~~-----~-~~l~g~~~IGH~R~sT~G~--~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtE  128 (442)
T PRK08341         57 KGGS-----L-SRLKSNLAIGHVRYSTSGS--LSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTE  128 (442)
T ss_pred             cccc-----c-ccCCCCEEEEEeeccccCC--CcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHH
Confidence            5421     1 2567999999999999995  4689999875 4678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc----Cccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD----GAVSIL  232 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~----~~~~~~  232 (636)
                      +|++++.+.+.+++        ++.+++++++++|+|+|||++++   ++.|+++||+   |||++|..+    +||..|
T Consensus       129 VI~~li~~~~~~~~--------~~~~ai~~~~~~l~G~yal~i~~---~~~l~a~RD~~GirPL~~G~~~~~~~ASE~~A  197 (442)
T PRK08341        129 LIGISFLWHYSETG--------DEFEAMREVFNEVKGAYSVAILF---DGKIIVARDPVGFRPLSYGEGDGHYFASEDSA  197 (442)
T ss_pred             HHHHHHHHHHHhcC--------CHHHHHHHHHHhccCceEEEEEE---CCEEEEEEcCCCceEEEEEECCEEEEEeCcHH
Confidence            99999987765543        67899999999999999999998   5899999999   999999876    555555


Q ss_pred             ccce----eeccCCCe
Q 006659          233 KFDN----AKGRNGGT  244 (636)
Q Consensus       233 ~~~~----~~~~~g~~  244 (636)
                      +...    ..++||++
T Consensus       198 l~~~~~~v~~l~PGei  213 (442)
T PRK08341        198 LRMFVNEIRDVFPGEV  213 (442)
T ss_pred             HHhhCCeEEEeCCCEE
Confidence            5332    27999999

>PRK09123 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=4.4e-37  Score=330.91  Aligned_cols=206  Identities=28%  Similarity=0.386  Sum_probs=173.2

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.      .++...++.+|.+||||||||+||++.++.               .+.++|+.|++++    +|
T Consensus        21 mCGI~Gi~~~------~~~~~~~~~gL~~LqHRG~dsaGia~~~~~---------------~~~~~k~~Glv~~----vf   75 (479)
T PRK09123         21 ECGVFGILGH------PDAAALTALGLHALQHRGQEAAGIVSFDGE---------------RFHSERRMGLVGD----HF   75 (479)
T ss_pred             cCeEEEEEcC------cchHHHHHHHHHHhcCcCccCCEEEEEECC---------------EEEEEecCcchhh----hh
Confidence            9999999953      356678999999999999999999998764               6899999999885    55


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++..  .+   ..++|+++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus        76 ~~~~--~l---~~l~G~~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSE  150 (479)
T PRK09123         76 TDAD--VI---ARLPGNRAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTE  150 (479)
T ss_pred             hhhh--hh---hccCCCEEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHH
Confidence            5321  11   2467999999999999998888999999875 4678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI  231 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~  231 (636)
                      +|+++|.+.+.          .++.+++++++++|+|+|||++++   .++|+++||+   |||++|..+     +||..
T Consensus       151 vi~~Li~~~~~----------~~~~eai~~~~~~L~G~ya~vil~---~~~l~a~RD~~GirPL~~g~~~~~~~~ASE~~  217 (479)
T PRK09123        151 VILHLIARSRK----------ASFLDRFIDALRQVEGAYSLVALT---NTKLIGARDPLGIRPLVLGELDGSPILASETC  217 (479)
T ss_pred             HHHHHHHHHcc----------CCHHHHHHHHHHHhhcceeEEEEE---CCEEEEEECCCCCCceEEEEECCEEEEEECch
Confidence            99999986442          368999999999999999999998   5799999999   999999886     45555


Q ss_pred             cccc----ee-eccCCCe--eeCCC
Q 006659          232 LKFD----NA-KGRNGGT--YARPA  249 (636)
Q Consensus       232 ~~~~----~~-~~~~g~~--~~~~~  249 (636)
                      ++..    +. .++||++  +..+|
T Consensus       218 Al~~~g~~~~r~v~pGeiv~i~~~g  242 (479)
T PRK09123        218 ALDIIGAEFVRDVEPGELVVIDEDG  242 (479)
T ss_pred             HHhccCCceEEEECCCeEEEEeCCC
Confidence            5522    22 7999999  34455

>PRK07847 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=5.7e-37  Score=330.36  Aligned_cols=208  Identities=27%  Similarity=0.426  Sum_probs=172.8

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.+     .++...++.+|.+||||||||+||++.++.               ++.++|+.|.+++    +|
T Consensus        23 mCGI~Gi~~~~-----~~~~~~~~~gL~~LqHRGqdsaGIa~~d~~---------------~i~~~K~~Glv~~----vf   78 (510)
T PRK07847         23 ECGVFGVWAPG-----EEVAKLTYYGLYALQHRGQEAAGIAVSDGS---------------QILVFKDLGLVSQ----VF   78 (510)
T ss_pred             cCeEEEEECCC-----cCHHHHHHHHHHHHhhhCcCcccEEEEeCC---------------EEEEEecCccHHH----hh
Confidence            99999999532     256677889999999999999999999764               6899999998875    56


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-C-CCcEEEEEcceecChHHHHHHHHhCCCc-----cc
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-A-GNEFLVVHNGVITNYEVLKETLIRHGFT-----FE  153 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~-~~~~~~~hNG~i~N~~~l~~~l~~~g~~-----~~  153 (636)
                      ++.   .+   ..+.|+++|||+||+|+|.++..|+|||... . .++++++|||+|+|+.+||++|...|+.     |.
T Consensus        79 ~d~---~l---~~l~G~i~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~  152 (510)
T PRK07847         79 DEQ---TL---ASLQGHVAIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAG  152 (510)
T ss_pred             chh---hh---hhcCCcEEEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCC
Confidence            531   11   2567999999999999998888999999865 2 5789999999999999999999988874     89


Q ss_pred             cCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc----
Q 006659          154 SETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD----  226 (636)
Q Consensus       154 ~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~----  226 (636)
                      +.||||+|+++|.+...+         .++.+++++++++|+|+|||+++|   .++||++||+   |||++|..+    
T Consensus       153 s~sDSEVI~~Li~~~~~~---------~~~~eai~~~~~~l~G~yA~vi~d---~~~L~aaRDp~GirPL~~g~~~~~~~  220 (510)
T PRK07847        153 ATTDTDLVTALLAHGAAD---------STLEQAALELLPTVRGAFCLVFMD---EHTLYAARDPQGVRPLVLGRLERGWV  220 (510)
T ss_pred             CCCHHHHHHHHHHHhccC---------CCHHHHHHHHHHHhhhheEEEEEE---CCEEEEEECCCCCCCcEEEEECCeEE
Confidence            999999999999865421         279999999999999999999999   5799999999   999999986    


Q ss_pred             -Cccccccccee-----eccCCCe--eeCCCc
Q 006659          227 -GAVSILKFDNA-----KGRNGGT--YARPAS  250 (636)
Q Consensus       227 -~~~~~~~~~~~-----~~~~g~~--~~~~~~  250 (636)
                       +||..++...+     .++||++  +..+|.
T Consensus       221 vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv  252 (510)
T PRK07847        221 VASETAALDIVGASFVREIEPGELIAIDADGL  252 (510)
T ss_pred             EEechHHHhccCCcEEEEECcCEEEEEECCce
Confidence             45555554331     7999999  334443

>PRK05793 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=9.2e-37  Score=329.07  Aligned_cols=208  Identities=25%  Similarity=0.405  Sum_probs=174.1

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.+    ..++...++.+|.+||||||||+||++.++.               .+.++|+.|++++    +|
T Consensus        14 mCGI~Gi~~~~----~~~~~~~~~~gL~~LqhRG~dsaGIa~~~~~---------------~~~~~k~~G~v~~----~f   70 (469)
T PRK05793         14 ECGVFGVFSKN----NIDVASLTYYGLYALQHRGQESAGIAVSDGE---------------KIKVHKGMGLVSE----VF   70 (469)
T ss_pred             CCeEEEEEcCC----CccHHHHHHHHHHHHhhhCCCcceEEEEeCC---------------EEEEEeccccccc----cc
Confidence            99999999642    1256678889999999999999999998764               6899999999875    45


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++.   .+   ..++|+++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus        71 ~~~---~l---~~l~g~~~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSE  144 (469)
T PRK05793         71 SKE---KL---KGLKGNSAIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSE  144 (469)
T ss_pred             chh---hH---hccCCcEEEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHH
Confidence            431   11   2467999999999999998888999999875 4678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI  231 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~  231 (636)
                      +|+++|.+.+.          .++.+++++++++|+|+||+++++   .++||++||+   |||++|..+     +||..
T Consensus       145 vi~~li~~~~~----------~~~~~ai~~~~~~l~G~ya~vi~~---~~~l~a~RD~~GirPL~~g~~~~~~~vASE~~  211 (469)
T PRK05793        145 VILNLIARSAK----------KGLEKALVDAIQAIKGSYALVILT---EDKLIGVRDPHGIRPLCLGKLGDDYILSSESC  211 (469)
T ss_pred             HHHHHHHHHcc----------CCHHHHHHHHHHHhhhhceEEEEE---CCEEEEEECCCCCCCcEEEEECCEEEEEEChH
Confidence            99999986542          368999999999999999999998   5799999999   899999987     55555


Q ss_pred             cccc----ee-eccCCCe--eeCCCc
Q 006659          232 LKFD----NA-KGRNGGT--YARPAS  250 (636)
Q Consensus       232 ~~~~----~~-~~~~g~~--~~~~~~  250 (636)
                      ++..    .. .++||++  +..+|.
T Consensus       212 al~~~g~~~~r~v~pGeiv~i~~~g~  237 (469)
T PRK05793        212 ALDTIGAEFIRDVEPGEIVIIDEDGI  237 (469)
T ss_pred             HHhhcCcceEEEeCCCeEEEEECCce
Confidence            5542    22 7999999  334443

>PRK08525 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=9e-37  Score=327.51  Aligned_cols=200  Identities=22%  Similarity=0.402  Sum_probs=168.8

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.      .+....++.||.+||||||||+||++.+++               .+.++|+.|.++++    |
T Consensus         1 MCGI~G~~~~------~~~~~~~~~~L~~LqhRG~DsaGia~~~~~---------------~~~~~k~~G~v~~~----f   55 (445)
T PRK08525          1 MCAVVGVINS------KNAAKLAYYALFAMQHRGQEASGISVSNGK---------------KIKTIKGRGLVTQV----F   55 (445)
T ss_pred             CceEEEEEcC------ccHHHHHHHHHHHhhCcCcccceEEEEeCC---------------EEEEEEcCcchhhc----c
Confidence            9999999953      345677889999999999999999998754               68999999998864    4


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++.   .+   ..++|+++|||+||+|+|.++..|+|||... ..++++++|||+|+|+.+||++|...|+.|.++||||
T Consensus        56 ~~~---~~---~~~~g~~~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtE  129 (445)
T PRK08525         56 NED---NL---KTLKGEIAIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTE  129 (445)
T ss_pred             chh---hh---hccCCcEEEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHH
Confidence            321   11   2457899999999999998888999999874 3678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec-c-----Cccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK-D-----GAVS  230 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~-~-----~~~~  230 (636)
                      +|++++.+...          .++.+++++++++|+|+|||++++   .++|+++||+   |||++|.. +     +||.
T Consensus       130 vi~~l~~~~~~----------~~~~ea~~~~~~~L~G~fa~vi~~---~~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~  196 (445)
T PRK08525        130 NLIHLIARSKK----------ESLKDRIIEALKKIIGAYCLVLLS---RSKMFAIRDPHGVRPLSLGRLKDGGYIVASET  196 (445)
T ss_pred             HHHHHHHHHcC----------CCHHHHHHHHHHhcCCceEEEEEe---CCEEEEEECCCCCCCeEEEEecCCEEEEEECH
Confidence            99999985321          379999999999999999999998   5799999999   99999975 2     4555


Q ss_pred             ccc----ccee-eccCCCe
Q 006659          231 ILK----FDNA-KGRNGGT  244 (636)
Q Consensus       231 ~~~----~~~~-~~~~g~~  244 (636)
                      .++    .+.. .++||++
T Consensus       197 ~al~~~g~~~~~~~~pGe~  215 (445)
T PRK08525        197 CAFDLIGAEFIRDVKPGEM  215 (445)
T ss_pred             HHhhccCCcEEEEeCCCeE
Confidence            565    2222 7999999

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=100.00  E-value=2.5e-36  Score=297.95  Aligned_cols=216  Identities=27%  Similarity=0.425  Sum_probs=178.7

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||++..+    .......+.....+|||||||++||++.++.              +.+.+.|+.|++++    ||
T Consensus         1 eCGv~Gi~~a~----~~~~l~~l~~~~~aLQHRGQesAGIvts~~~--------------~~~~~~kG~Gmv~d----VF   58 (474)
T KOG0572|consen    1 ECGVFGIVAAG----EASRLPELALGCVALQHRGQESAGIVTSGGR--------------GRLYQIKGMGLVSD----VF   58 (474)
T ss_pred             CCcEEEEEecC----ccccCcHHHhhhHHHhhCCccccceEeecCC--------------CceEEEeccchhhh----hh
Confidence            99999999764    2234456767778999999999999999864              47999999999885    67


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      .+..   +   ..+.|+++|||+||+|.|.....|+|||... ..|.++++|||++.|+++||++|...|+.+.++||||
T Consensus        59 te~~---l---~~L~g~~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSE  132 (474)
T KOG0572|consen   59 TEDK---L---SQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSE  132 (474)
T ss_pred             cHHH---H---hhCccceeeeeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHH
Confidence            6422   2   2467999999999999999888999999998 7788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc---------C
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD---------G  227 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~---------~  227 (636)
                      +|+++|...+...   -+.+.+++...++.+++.+.|+||++++.   .|.||++|||   ||||+|.+.         .
T Consensus       133 lil~~~a~~~~~~---~~~~~~d~~~ri~~~~~~~~g~Yslv~m~---~d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~  206 (474)
T KOG0572|consen  133 LILQLIAYAPEDV---YRVDAPDWFARIRDVMELLPGAYSLVFMT---ADKLYAVRDPYGNRPLCIGRRSNPDGTEAWVV  206 (474)
T ss_pred             HHHHHHHhchHhh---hcccCccHHHHHHHHHHhcCCceeEEEEE---ccEEEEEecCCCCccceEeeecCCCCcceEEE
Confidence            9999998775431   12245799999999999999999999999   5789999999   999999986         2


Q ss_pred             cccccccc-ee-----eccCCCe--eeCCCc
Q 006659          228 AVSILKFD-NA-----KGRNGGT--YARPAS  250 (636)
Q Consensus       228 ~~~~~~~~-~~-----~~~~g~~--~~~~~~  250 (636)
                      +++++.|+ .+     +++|||+  +..+|.
T Consensus       207 aSESc~f~~i~a~y~Rev~PGEiV~i~r~g~  237 (474)
T KOG0572|consen  207 ASESCAFLSIGARYEREVRPGEIVEISRNGV  237 (474)
T ss_pred             EecceeeeecccEEEEeecCceEEEEecCCc
Confidence            33444443 21     8999999  344453

>PLN02440 amidophosphoribosyltransferase

Probab=100.00  E-value=1.1e-35  Score=321.50  Aligned_cols=205  Identities=25%  Similarity=0.417  Sum_probs=171.6

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.      +++...++.||.+|||||||++||++.++.               .+..+|..|.+++    +|
T Consensus         1 MCGI~Gi~~~------~~~~~~~~~~L~~LqHRGqds~Gi~~~d~~---------------~~~~~k~~Glv~~----vf   55 (479)
T PLN02440          1 ECGVVGIFGD------PEASRLCYLGLHALQHRGQEGAGIVTVDGN---------------RLQSITGNGLVSD----VF   55 (479)
T ss_pred             CceEEEEECC------ccHHHHHHHHHHHHHhhCcccceEEEEcCC---------------EEEEEecCCchhh----hc
Confidence            9999999952      345678999999999999999999999764               6888999998764    55


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      ++-   .+   ..+.++++|||+||+|+|..+..|+|||... ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus        56 ~~~---~l---~~l~g~~~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsE  129 (479)
T PLN02440         56 DES---KL---DQLPGDIAIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTE  129 (479)
T ss_pred             chh---hh---hccCCcEEEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHH
Confidence            541   12   2467999999999999998888999999875 4578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Cccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVS  230 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~  230 (636)
                      +|+++|.+.+.          .++.+++.+++++|+|+||+++++   +++||++||+   |||++|...      +||.
T Consensus       130 vi~~li~~~~~----------~~~~~a~~~~~~~l~G~fa~vi~~---~~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~  196 (479)
T PLN02440        130 VLLHLIAISKA----------RPFFSRIVDACEKLKGAYSMVFLT---EDKLVAVRDPHGFRPLVMGRRSNGAVVFASET  196 (479)
T ss_pred             HHHHHHHHhhh----------hhHHHHHHHHHHHhccceeeeEEE---CCEEEEEECCCCCCceEEEEeCCCEEEEEECc
Confidence            99999986542          368899999999999999999999   4679999999   899999753      4555


Q ss_pred             ccccce-----eeccCCCe--eeCCC
Q 006659          231 ILKFDN-----AKGRNGGT--YARPA  249 (636)
Q Consensus       231 ~~~~~~-----~~~~~g~~--~~~~~  249 (636)
                      .++...     ..++|||+  +..+|
T Consensus       197 ~al~~~g~~~ir~v~PGeiv~i~~~g  222 (479)
T PLN02440        197 CALDLIGATYEREVNPGEVIVVDKDK  222 (479)
T ss_pred             hHHhccCCcEEEEeCCCeEEEEECCC
Confidence            555433     27999999  44556

>PRK09246 amidophosphoribosyltransferase; Provisional

Probab=100.00  E-value=1e-35  Score=323.88  Aligned_cols=215  Identities=24%  Similarity=0.357  Sum_probs=172.1

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||||+++.      .++...++.||.+|||||||++||++++++               .+.++|+.|.+++    +|
T Consensus         1 MCGI~Gi~~~------~~~~~~~~~~L~aLqHRGqdsaGi~~~~~~---------------~~~~~k~~Glv~~----vf   55 (501)
T PRK09246          1 MCGIVGIVGH------SPVNQSIYDALTVLQHRGQDAAGIVTIDGN---------------RFRLRKANGLVRD----VF   55 (501)
T ss_pred             CceEEEEEcC------cCHHHHHHHHHHHHhccCcceeEEEEEeCC---------------EEEEEccCCcccc----cc
Confidence            9999999953      234567889999999999999999998764               7899999998875    45


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhC-CCccccCCHhh
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRH-GFTFESETDTE  159 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~-g~~~~~~tDsE  159 (636)
                      ++.   .+   ..++|+++|||+||+|.|..+..|+|||.....++++++|||+|+|+.+||++|... ++.|.+.||||
T Consensus        56 ~~~---~l---~~l~g~~~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsE  129 (501)
T PRK09246         56 RTR---HM---RRLQGNMGIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSE  129 (501)
T ss_pred             Ccc---hH---hhCCCCEEEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHH
Confidence            531   11   246799999999999999888899999986534459999999999999999999987 67889999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec----c-----C
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK----D-----G  227 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~----~-----~  227 (636)
                      +|++++.+.+.... +...+..++.+++++++++|+|+||++++..  +++|+++|||   |||++|..    .     +
T Consensus       130 vi~~li~~~l~~~~-g~~~~~~~l~eai~~~~~~l~Gays~v~~~~--~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~A  206 (501)
T PRK09246        130 VLLNVFAHELQKFR-GLPLTPEDIFAAVAAVHRRVRGAYAVVAMII--GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVA  206 (501)
T ss_pred             HHHHHHHHHHHhcc-ccccCccCHHHHHHHHHHhcccceeeEEEec--CCcEEEEECCCCCCCeEEEeecCCCCCEEEEE
Confidence            99999987764311 1111224789999999999999999997753  4689999999   99999987    2     4


Q ss_pred             ccccccccee-----eccCCCe--eeCCC
Q 006659          228 AVSILKFDNA-----KGRNGGT--YARPA  249 (636)
Q Consensus       228 ~~~~~~~~~~-----~~~~g~~--~~~~~  249 (636)
                      ||..|+...+     .++||++  +..+|
T Consensus       207 SE~~Al~~~g~~~ir~v~PGeiv~i~~~g  235 (501)
T PRK09246        207 SESVALDALGFEFVRDVAPGEAIYITEDG  235 (501)
T ss_pred             ECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence            5554554322     7999999  45566

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

Probab=100.00  E-value=1.7e-35  Score=295.57  Aligned_cols=218  Identities=27%  Similarity=0.410  Sum_probs=166.2

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCC-CCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGY-DSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~-d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      |||||+++.+.   .......+..||.+|||||| ||+|+++.+..+      ..+.-.++.+.++|+.|.+.++.    
T Consensus         1 CGI~G~~~~~~---~~~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~------~~~~s~~~~~~~~K~~G~~~~v~----   67 (249)
T cd01907           1 CGIFGIMSKDG---EPFVGALLVEMLDAMQERGPGDGAGFALYGDPD------AFVYSSGKDMEVFKGVGYPEDIA----   67 (249)
T ss_pred             CcEEEEEecCC---ccccHHHHHHHHHHHHhcCCCCCceEEEEcCCC------eEEEecCCCeEEEeeccCHHHHH----
Confidence            99999997531   12456789999999999999 999999985310      00000023699999999998754    


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                      +.     +++ ..++++++|||+||+|+|..+..|+|||...   +++++|||+|+|+.+||++|...|+.|.+.||||+
T Consensus        68 ~~-----~~~-~~~~~~~~igH~R~aT~g~~~~~n~qP~~~~---~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEv  138 (249)
T cd01907          68 RR-----YDL-EEYKGYHWIAHTRQPTNSAVWWYGAHPFSIG---DIAVVHNGEISNYGSNREYLERFGYKFETETDTEV  138 (249)
T ss_pred             hh-----cCc-hheEEEEEEEEEeccCCCCCCccCCCCeecC---CEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHH
Confidence            32     111 2467899999999999998888899999865   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc-----------CCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          161 IPKLAKFVFDKANEE-----------EGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       161 i~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                      +++++.+.+.+++..           ++.....+.++++.++++|+|+|+|++++   ++.++++||+   |||++|..+
T Consensus       139 i~~ll~~~~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~---~~~~~~~RD~~G~rPL~~g~~~  215 (249)
T cd01907         139 IAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGT---PDGFIVIRDRIKLRPAVVAETD  215 (249)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEe---CCeEEEEecCCCCccEEEEEEC
Confidence            999998766443200           00000013446678889999999999998   5789999999   999999887


Q ss_pred             -----Ccccccccce----e----eccCCCe
Q 006659          227 -----GAVSILKFDN----A----KGRNGGT  244 (636)
Q Consensus       227 -----~~~~~~~~~~----~----~~~~g~~  244 (636)
                           +||..++...    .    .++||++
T Consensus       216 ~~~~~ASE~~al~~~~~~~~~~~~~l~pGe~  246 (249)
T cd01907         216 DYVAIASEECAIREIPDRDNAKVWEPRPGEY  246 (249)
T ss_pred             CEEEEEEcHHHHhccCccchheEecCCCCce
Confidence                 5555555432    1    6788876

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>TIGR01134 purF amidophosphoribosyltransferase

Probab=100.00  E-value=8.4e-34  Score=304.72  Aligned_cols=202  Identities=27%  Similarity=0.435  Sum_probs=168.2

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++..     ++....++.||.+|||||||++||++.++.               .+.++|+.|.+++    +|+
T Consensus         1 CGI~Gi~~~~-----~~~~~~~~~~L~~lqhRG~ds~Gia~~d~~---------------~~~~~k~~glv~~----v~~   56 (442)
T TIGR01134         1 CGVVGIYSQE-----EDAASLTYYGLYALQHRGQEAAGIAVSDGN---------------KIRTHKGNGLVSD----VFD   56 (442)
T ss_pred             CEEEEEEcCC-----ccHHHHHHHHHHHHHhhCccceEEEEEeCC---------------EEEEEEcCCchhh----hcc
Confidence            9999999632     236678889999999999999999999764               7899999998775    565


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI  161 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i  161 (636)
                      +.   .+   ..+.|+++|||+||+|+|..+..|+|||.....++++++|||+|+|+.+|+++|...|+.|.+.||||+|
T Consensus        57 ~~---~l---~~l~g~~~IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi  130 (442)
T TIGR01134        57 ER---HL---ERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVL  130 (442)
T ss_pred             hh---hh---hcccCcEEEEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH
Confidence            41   11   2456899999999999998888999999865234599999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc----Cccccccc
Q 006659          162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD----GAVSILKF  234 (636)
Q Consensus       162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~----~~~~~~~~  234 (636)
                      ++++.+....        ..++.+++++++++|+|+|+|++++   +++|+++||+   |||++|..+    .+++.+.+
T Consensus       131 ~~li~~~~~~--------~~~~~~ai~~~~~~l~G~falvi~~---~~~L~a~RD~~G~rPL~~g~~~~~~~~ASE~~al  199 (442)
T TIGR01134       131 LHLLARERLE--------EDDLFEAIARVLKRVRGAYALVIMI---GDGLIAVRDPHGIRPLVLGKRGDGYVVASESCAL  199 (442)
T ss_pred             HHHHHHhhcc--------cCCHHHHHHHHHHHhCccceEEEEE---CCEEEEEECCCCCCCcEEEEeCCEEEEEeCchHh
Confidence            9999865421        1479999999999999999999997   6899999999   999999887    34444333


Q ss_pred             c------eeeccCCCe
Q 006659          235 D------NAKGRNGGT  244 (636)
Q Consensus       235 ~------~~~~~~g~~  244 (636)
                      +      ...++||++
T Consensus       200 ~~~g~~~~r~v~pGei  215 (442)
T TIGR01134       200 DILGAEFIRDVEPGEA  215 (442)
T ss_pred             cccCCcEEEEECCCeE
Confidence            3      127999999

Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type

Probab=100.00  E-value=4.4e-33  Score=280.08  Aligned_cols=200  Identities=26%  Similarity=0.417  Sum_probs=166.3

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++.      .+....+..||.+|+|||||++|++..++.               .+.++|..|.+.+    +|+
T Consensus         1 Cgi~g~~~~------~~~~~~~~~~l~~l~~RG~D~~Gi~~~d~~---------------~~~~~k~~g~~~~----~~~   55 (252)
T cd00715           1 CGVFGIYGA------EDAARLTYLGLYALQHRGQESAGIATSDGK---------------RFHTHKGMGLVSD----VFD   55 (252)
T ss_pred             CEEEEEECC------cchHHHHHHHHHHHhccCcceeEEEEEeCC---------------EEEEEecCCcHHH----hhc
Confidence            999999953      244577889999999999999999999764               6888999887664    344


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                      +..   +   ....++++|||+||+|+|..+..|+|||... .+++++++|||+|+|+.+|+++|...++.+.+.||||+
T Consensus        56 ~~~---~---~~~~~~~~lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEv  129 (252)
T cd00715          56 EEK---L---RRLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEV  129 (252)
T ss_pred             ccc---h---hhCCCcEEEEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHH
Confidence            321   1   2356889999999999998888999999874 35789999999999999999999988888899999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSI  231 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~  231 (636)
                      +++++.+.+.+         .++.+++++++++|+|.||++++|   +++|+++||+   |||++|..+      +|+..
T Consensus       130 i~~l~~~~~~~---------~~~~~al~~~~~~l~G~~a~~~~d---~~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~  197 (252)
T cd00715         130 ILHLIARSLAK---------DDLFEAIIDALERVKGAYSLVIMT---ADGLIAVRDPHGIRPLVLGKLEGDGYVVASESC  197 (252)
T ss_pred             HHHHHHHhhcc---------CCHHHHHHHHHHhccCceEEEEEE---CCEEEEEECCCCCCCeEEEEeCCCeEEEEECHH
Confidence            99999865432         379999999999999999999999   4899999999   999999864      44444


Q ss_pred             cccce-----eeccCCCe
Q 006659          232 LKFDN-----AKGRNGGT  244 (636)
Q Consensus       232 ~~~~~-----~~~~~g~~  244 (636)
                      ++...     ..++||++
T Consensus       198 al~~~~~~~~~~l~pg~~  215 (252)
T cd00715         198 ALDIIGAEFVRDVEPGEI  215 (252)
T ss_pred             HhcccCCcEEEEcCCCeE
Confidence            44332     27999999

This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)

Probab=99.96  E-value=1e-28  Score=244.48  Aligned_cols=205  Identities=30%  Similarity=0.489  Sum_probs=160.8

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++.+....  ........++..++|||+|++|+++++..               ....+|..+.+++.    +.
T Consensus         1 Cgi~g~~~~~~~~~--~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~---------------~~~~~~~~~~~~~~----~~   59 (220)
T cd00352           1 CGIFGIVGADGAAS--LLLLLLLRGLAALEHRGPDGAGIAVYDGD---------------GLFVEKRAGPVSDV----AL   59 (220)
T ss_pred             CEEEEEECCCCcch--hhHHHHHHHHHhhcccCCccCCeEEECCC---------------ceEEEEeccchhhh----hh
Confidence            99999997653211  11111146899999999999999999864               56667776665432    11


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI  161 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i  161 (636)
                      .      .+.....+.++|||+||+|+|.++..|+|||... .++++++|||+|+|+.+|+++|...+..+.+.||||++
T Consensus        60 ~------~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~-~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i  132 (220)
T cd00352          60 D------LLDEPLKSGVALGHVRLATNGLPSEANAQPFRSE-DGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVI  132 (220)
T ss_pred             h------hhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcC-CCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHH
Confidence            1      1113456899999999999998888999999976 47899999999999999999999988889999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec-c-----Cccccc
Q 006659          162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK-D-----GAVSIL  232 (636)
Q Consensus       162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~-~-----~~~~~~  232 (636)
                      ++++.+....         ..+.+++++++++++|.|+|+++|.. +++++++||+   |||+++.. +     .|+..+
T Consensus       133 ~~~~~~~~~~---------~~~~~~~~~~~~~~~G~~~~~~~d~~-~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~  202 (220)
T cd00352         133 LHLLERLGRE---------GGLFEAVEDALKRLDGPFAFALWDGK-PDRLFAARDRFGIRPLYYGITKDGGLVFASEPKA  202 (220)
T ss_pred             HHHHHHHhcc---------CCHHHHHHHHHHhCCccEEEEEEECC-CCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHH
Confidence            9999965532         23889999999999999999999976 5899999999   99999998 5     333333


Q ss_pred             ccc-----eeeccCCCe
Q 006659          233 KFD-----NAKGRNGGT  244 (636)
Q Consensus       233 ~~~-----~~~~~~g~~  244 (636)
                      +..     ...++||++
T Consensus       203 ~~~~~~~~~~~l~~g~~  219 (220)
T cd00352         203 LLALPFKGVRRLPPGEL  219 (220)
T ss_pred             HhhcCcccEEECCCCCC
Confidence            322     236888775

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format

>cd05010 SIS_AgaS_like AgaS-like protein

Probab=99.96  E-value=5.6e-29  Score=228.90  Aligned_cols=141  Identities=22%  Similarity=0.279  Sum_probs=121.3

Q ss_pred             EEEEeCCCCHHHHHHHHHHHHHhcc--ccccccccccccccccccccCCCCeEEEEeCCcchHH-HHHHHHHHHhc--CC
Q 006659          493 LLVFGRGYNYATALEGALKVKEVAL--MHSEGILAGEMKHGPLALVDENLPILVIATRDACFSK-QQSVIQQLHAR--KG  567 (636)
Q Consensus       493 ~~~lG~G~~~~~A~e~alKl~E~~~--~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~-~~~~~~~~~~~--g~  567 (636)
                      ++++|+|++|++|+|+||||+|+++  +||++++.+||+|||++++++++++|+|.++|+.++. .++++++++++  |+
T Consensus         1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~   80 (151)
T cd05010           1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA   80 (151)
T ss_pred             CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence            4799999999999999999999998  8999999999999999999999999999998876643 56899999988  89


Q ss_pred             eEEEEecCCCCcCCCCCCcce-EEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeec
Q 006659          568 RLIVMCSKGDAASIFPGGSCR-VIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTT  635 (636)
Q Consensus       568 ~v~vi~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~  635 (636)
                      ++++|+.+.....+  ...+. .+.+|..++.+.|+++++|+|+|+|++|..+|+|||.||+++|+|||
T Consensus        81 ~vi~i~~~~~~~~~--~~~~~~l~~~~~~~~~l~p~~~iip~Qlla~~~A~~~G~dpD~Pr~~~~v~~~  147 (151)
T cd05010          81 RVIAISPESDAGIE--DNSHYYLPGSRDLDDVYLAFPYILYAQLFALFNSIALGLTPDNPCPSGTVNRV  147 (151)
T ss_pred             eEEEEEcCCccccc--cccceeecccCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEE
Confidence            99999875322111  01122 24556777899999999999999999999999999999999999987

AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.

>TIGR03442 conserved hypothetical protein TIGR03442

Probab=99.95  E-value=6.9e-28  Score=240.10  Aligned_cols=206  Identities=20%  Similarity=0.247  Sum_probs=156.7

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCC------------CCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEee
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGY------------DSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQ   68 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~------------d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~   68 (636)
                      ||+|||+++.+     -.....|+.....|.+|+.            ||||++++.+..            .....+||+
T Consensus         1 MCr~~gy~g~~-----~~l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~------------~~~~~~~k~   63 (251)
T TIGR03442         1 MCRHLAYLGAP-----VSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGK------------DTVPFRYRS   63 (251)
T ss_pred             CceEeeecCCC-----eeHHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCC------------CCCceEEeC
Confidence            99999999632     1344566667777777665            999999997420            125899999


Q ss_pred             cccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCC-CCCCCCCCcccCCCCcEEEEEcceecChH-----HHH
Q 006659           69 EGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGE-PAPRNSHPQTSGAGNEFLVVHNGVITNYE-----VLK  142 (636)
Q Consensus        69 ~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~-~~~~n~qPf~~~~~~~~~~~hNG~i~N~~-----~l~  142 (636)
                      ++++.+=  ..++.+       .+..++.++|||+||||.|. .+..|+|||..+   +|+|+|||.|.|++     +|+
T Consensus        64 ~~pa~~d--~~l~~l-------~~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~g---~~~~aHNG~i~n~~~~~r~~L~  131 (251)
T TIGR03442        64 TQPIWND--INFASL-------ARYVESGCVLAAVRSATVGMAIDESACAPFSDG---RWLFSHNGFVDNFRQTLYRPLR  131 (251)
T ss_pred             CCccccC--hhHHHH-------HhhcccceEEEEeeeCCCCCCcchhcCCCCCcC---CEEEEeCCccCCchhhhhHHHH
Confidence            9876430  122222       13456889999999999996 577899999954   89999999999997     566


Q ss_pred             HHHHhCCC-ccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhh-------hheeEEecCCCCeEEEE
Q 006659          143 ETLIRHGF-TFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGA-------YALIFKSQHYPNELIAC  214 (636)
Q Consensus       143 ~~l~~~g~-~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~-------~a~~~~d~~~~~~l~~~  214 (636)
                      ++|...++ .+.+.||||++++++.+.+.+..      +.++.++++++++.+.|.       |+|++.|   +++||++
T Consensus       132 ~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~------~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sd---g~~l~a~  202 (251)
T TIGR03442       132 DRLPDIFYLAIEGSTDSAHLFALLLNRLLEND------PRALEEALAEVLLILFSAAAAPRVRLNLLLTD---GSRLVAT  202 (251)
T ss_pred             hcCChhhccCCCCCCHHHHHHHHHHHHHhhcC------CchHHHHHHHHHHHHHHHhhCcccceEEEEEc---CCEEEEE
Confidence            77766664 68899999999999998764321      247899999999999999       9999999   7899999


Q ss_pred             EcCCceEEEecc-----Cccccccc-ceeeccCCCe
Q 006659          215 KRGSPLLLGVKD-----GAVSILKF-DNAKGRNGGT  244 (636)
Q Consensus       215 Rd~~pL~~G~~~-----~~~~~~~~-~~~~~~~g~~  244 (636)
                      ||+.|||+|..+     +|+.-..- .-..++||++
T Consensus       203 R~~~~L~~~~~~~~~vvASEpl~~~~~W~~v~pge~  238 (251)
T TIGR03442       203 RWADTLYWLKDPEGVIVASEPYDDDPGWQDVPDRHL  238 (251)
T ss_pred             EeCCeEEEEEcCCEEEEEeCCcCCCCCceEeCCCeE
Confidence            999999999976     33331111 1228999999

Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=99.95  E-value=4.1e-26  Score=252.21  Aligned_cols=176  Identities=26%  Similarity=0.360  Sum_probs=142.0

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||+|+++....  .......+..|+.+|+|||||+.|++...                                    
T Consensus         1 MCGI~g~~~~~~~--~~~~~~~~~~m~~~l~hRGPD~~g~~~~~------------------------------------   42 (578)
T PLN02549          1 MCGILAVLGCSDD--SQAKRSRVLELSRRLRHRGPDWSGLYGNE------------------------------------   42 (578)
T ss_pred             CCcEEEEEeCCCC--cchhHHHHHHHHHHhcCcCCCccCEEEeC------------------------------------
Confidence            9999999965421  11233567889999999999999998752                                    


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                                      .+++||.|+++.+.  ..+.||+... +++++++|||+|||+.+||++|..  +.|.+.||+|+
T Consensus        43 ----------------~~~Lgh~RLsI~d~--~~g~QP~~~~-~~~~~lv~NGEIyN~~eLr~~L~~--~~f~t~sD~Ev  101 (578)
T PLN02549         43 ----------------DCYLAHERLAIMDP--ESGDQPLYNE-DKTIVVTANGEIYNHKELREKLKL--HKFRTGSDCEV  101 (578)
T ss_pred             ----------------CeEEEEeeeeEeCC--CCCCCCcCcC-CCCEEEEEEEEEEcHHHHHHHHHh--CCCCCCCHHHH
Confidence                            26899999999986  4689999887 778999999999999999999975  77899999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSI  231 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~  231 (636)
                      |+++|.    +||              .+++++|+|+|||++||.. .++++++||+   +|||+|...      +|+..
T Consensus       102 il~ly~----~~G--------------~~~~~~L~G~FAf~i~D~~-~~~l~~aRD~~GikPLyyg~~~~g~~~fASE~K  162 (578)
T PLN02549        102 IAHLYE----EHG--------------EEFVDMLDGMFSFVLLDTR-DNSFIAARDHIGITPLYIGWGLDGSVWFASEMK  162 (578)
T ss_pred             HHHHHH----HHH--------------HHHHHhCCCceEEEEEECC-CCEEEEEECCCCCCCeEEEEecCCeEEEEecHH
Confidence            999998    454              6799999999999999987 6899999999   999999753      45545


Q ss_pred             cccc----eeeccCCCeeeC-CCcccce
Q 006659          232 LKFD----NAKGRNGGTYAR-PASVQRA  254 (636)
Q Consensus       232 ~~~~----~~~~~~g~~~~~-~~~~~~~  254 (636)
                      ++..    ...++||++... +|...+.
T Consensus       163 aL~~~~~~I~~lpPGh~l~~~~~~~~~y  190 (578)
T PLN02549        163 ALCDDCERFEEFPPGHYYSSKAGGFRRW  190 (578)
T ss_pred             HHHHHhCCEEEeCCCeEEEEcCCCEEEE
Confidence            5544    338999999432 3443333

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.95  E-value=2.9e-26  Score=252.27  Aligned_cols=167  Identities=26%  Similarity=0.395  Sum_probs=144.5

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||+|++..+ .  ..+....+..|...|.|||||..|++..                                     
T Consensus         1 MCGI~g~~~~~-~--~~~~~~~~~~m~~~l~hRGPD~~g~~~~-------------------------------------   40 (542)
T COG0367           1 MCGIAGILNFK-N--LIDAKSIIEEMTKLLRHRGPDDSGVWIS-------------------------------------   40 (542)
T ss_pred             CCceeeeeccc-c--cccchHHHHHHHHHhhccCCCccccEec-------------------------------------
Confidence            99999999764 1  1122577889999999999999999983                                     


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                                     .++++||.|++..+..+  ..||+... ++++++++||+|||+.+||++|...|+.|.+.+|+|+
T Consensus        41 ---------------~~~~~gh~rL~i~d~~~--g~QP~~~~-~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEv  102 (542)
T COG0367          41 ---------------LNALLGHRRLSIVDLSG--GRQPMIKE-GGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEV  102 (542)
T ss_pred             ---------------CCceeeeeEEEEecccc--CCCCcccC-CCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHH
Confidence                           23789999999998754  79999885 6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Cccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSIL  232 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~~  232 (636)
                      |++++.    +||              .+++++|+|.|+|++||.. .++||++||+   +||+++..+     +|+-.+
T Consensus       103 il~~y~----~~g--------------~~~~~~l~G~fAfai~d~~-~~~l~laRD~~GikPLyy~~~~~~l~faSE~Ka  163 (542)
T COG0367         103 ILTLYE----EWG--------------EDCVEHLNGMFAFAIYDET-RQKLFLARDPFGVKPLYYTSKNENLAFASEIKA  163 (542)
T ss_pred             HHHHHH----HHH--------------HHHHHHhccceEEEEEECC-CCEEEEEecCCCccccEEEecCCceEEEechhh
Confidence            999998    565              6799999999999999988 7899999999   888888887     466667


Q ss_pred             ccce---------eeccCCCe
Q 006659          233 KFDN---------AKGRNGGT  244 (636)
Q Consensus       233 ~~~~---------~~~~~g~~  244 (636)
                      ++..         ..++||+.
T Consensus       164 l~~~~~~~~~~~i~~l~pg~~  184 (542)
T COG0367         164 LLAHPVVRFLRDIKELPPGHL  184 (542)
T ss_pred             hhhCCcccccCCeEEcCCCcE
Confidence            7665         38999999

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=257.55  Aligned_cols=175  Identities=26%  Similarity=0.369  Sum_probs=143.3

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||+|+++....  .......+..|+.+|+|||||+.|++.....                                  
T Consensus         1 MCGI~gi~~~~~~--~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~----------------------------------   44 (586)
T PTZ00077          1 MCGILAIFNSKGE--RHELRRKALELSKRLRHRGPDWSGIIVLENS----------------------------------   44 (586)
T ss_pred             CceEEEEEecCCc--hhhHHHHHHHHHHHHhCCCCCcCCEEEeccC----------------------------------
Confidence            9999999965422  1223355778999999999999999875321                                  


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                                   ..+.+++||.|+++.+..  .+.||+... +++++++|||+|||+.+||++|...|+.|.+.||+|+
T Consensus        45 -------------~~~~~~lgh~RLsIvd~~--~g~QP~~~~-d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Ev  108 (586)
T PTZ00077         45 -------------PGTYNILAHERLAIVDLS--DGKQPLLDD-DETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEI  108 (586)
T ss_pred             -------------CCCcEEEEeccceecCCC--CCCCCcCCC-CCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHH
Confidence                         013489999999999863  489999876 7789999999999999999999989999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHH-HHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec-c-----Cccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVV-EVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK-D-----GAVS  230 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~-~-----~~~~  230 (636)
                      |+++|+    +||              . +++++|+|+|||++||.. .++++++||+   +|||+|.. +     +|+.
T Consensus       109 il~ly~----~~G--------------~~~~l~~L~G~FAf~i~D~~-~~~l~~aRD~~GikPLyy~~~~~g~~~faSE~  169 (586)
T PTZ00077        109 IGHLYK----EYG--------------PKDFWNHLDGMFATVIYDMK-TNTFFAARDHIGIIPLYIGYAKDGSIWFSSEL  169 (586)
T ss_pred             HHHHHH----HhC--------------HHHHHHhcCCCEEEEEEECC-CCEEEEEECCCCCcCeEEEEecCCeEEEEecH
Confidence            999998    565              4 799999999999999987 6899999999   99999974 3     4444


Q ss_pred             ccccc----eeeccCCCeee
Q 006659          231 ILKFD----NAKGRNGGTYA  246 (636)
Q Consensus       231 ~~~~~----~~~~~~g~~~~  246 (636)
                      .+++.    ...++||+...
T Consensus       170 kaL~~~~~~I~~lpPGh~l~  189 (586)
T PTZ00077        170 KALHDQCVEVKQFPPGHYYD  189 (586)
T ss_pred             HHHHHhcCCEEEeCCCcEEE
Confidence            45543    34899999943

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

Probab=99.94  E-value=3e-26  Score=226.18  Aligned_cols=148  Identities=27%  Similarity=0.418  Sum_probs=130.1

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||+|+++.+.   .......+..|+.+|+|||||++|++...                                     
T Consensus         1 cGI~g~~~~~~---~~~~~~~~~~~~~~l~hRGpd~~~~~~~~-------------------------------------   40 (220)
T cd00712           1 CGIAGIIGLDG---ASVDRATLERMLDALAHRGPDGSGIWIDE-------------------------------------   40 (220)
T ss_pred             CeEEEEEeCCC---CcchHHHHHHHHHHHhccCCCCCCEEEEC-------------------------------------
Confidence            99999997542   12345678899999999999999998862                                     


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI  161 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i  161 (636)
                                     ++++||+|++|.|..  .++||+... .++++++|||+|+|+.+|+++|...|+.+.+.||+|++
T Consensus        41 ---------------~~~lgh~rl~~~~~~--~~~qP~~~~-~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l  102 (220)
T cd00712          41 ---------------GVALGHRRLSIIDLS--GGAQPMVSE-DGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVI  102 (220)
T ss_pred             ---------------CEEEEEEeeeecCcc--cCCCCeEeC-CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChHHHH
Confidence                           378999999999974  889999876 67899999999999999999999999989999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                      ++++.    +||              .+++++|+|.|+|+++|.. .++++++||+   +||+++..+
T Consensus       103 ~~~~~----~~g--------------~~~~~~l~G~fa~vi~d~~-~~~l~~~rD~~G~~pLy~~~~~  151 (220)
T cd00712         103 LHLYE----EWG--------------EDCLERLNGMFAFALWDKR-KRRLFLARDRFGIKPLYYGRDG  151 (220)
T ss_pred             HHHHH----HHh--------------HHHHHHhhheEEEEEEECC-CCEEEEEECCCCCEeeEEEEEC
Confidence            99997    444              7899999999999999976 6999999999   999999877

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=99.93  E-value=6.6e-26  Score=250.41  Aligned_cols=172  Identities=22%  Similarity=0.335  Sum_probs=141.0

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||+|+++.....  ......+..|+.+|+|||||+.|++..+                                    
T Consensus         1 MCGI~g~~~~~~~~--~~~~~~~~~m~~~l~hRGPD~~g~~~~~------------------------------------   42 (554)
T PRK09431          1 MCGIFGILDIKTDA--DELRKKALEMSRLMRHRGPDWSGIYASD------------------------------------   42 (554)
T ss_pred             CceEEEEEcCCCcc--hhHHHHHHHHHHHhhCCCCCcCCEEEeC------------------------------------
Confidence            99999999654221  1123667889999999999999998752                                    


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                                      .+++||+|+++.+.  ..+.||+... ++++++++||+|||+.+|+++|... +.|.+.||+|+
T Consensus        43 ----------------~~~lgh~RLsIid~--~~g~QP~~~~-~~~~~lv~NGEIyN~~eLr~~L~~~-~~f~t~sD~Ev  102 (554)
T PRK09431         43 ----------------NAILGHERLSIVDV--NGGAQPLYNE-DGTHVLAVNGEIYNHQELRAELGDK-YAFQTGSDCEV  102 (554)
T ss_pred             ----------------CeEEEEEEeeecCC--CCCCCCCCcC-CCCEEEEEEEEEecHHHHHHHHhcc-CCcCCCCHHHH
Confidence                            26899999999986  3589999876 7789999999999999999999865 88899999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSI  231 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~  231 (636)
                      |+++|+    +||              .+++++|+|+|||++||.. .++++++||+   +|||+|..+      +|+..
T Consensus       103 il~ly~----~~G--------------~~~~~~L~G~FAf~i~D~~-~~~l~laRD~~GikPLyy~~~~~~~~~faSE~k  163 (554)
T PRK09431        103 ILALYQ----EKG--------------PDFLDDLDGMFAFALYDSE-KDAYLIARDPIGIIPLYYGYDEHGNLYFASEMK  163 (554)
T ss_pred             HHHHHH----HHH--------------HHHHHhCCCceEEEEEECC-CCEEEEEeCCCCCcceEEEEeCCCeEEEecchH
Confidence            999998    455              6799999999999999987 6899999999   999999765      44444


Q ss_pred             cccc----eeeccCCCeee-CCC
Q 006659          232 LKFD----NAKGRNGGTYA-RPA  249 (636)
Q Consensus       232 ~~~~----~~~~~~g~~~~-~~~  249 (636)
                      +++.    ...++||+... .+|
T Consensus       164 aL~~~~~~I~~lpPGh~l~~~~g  186 (554)
T PRK09431        164 ALVPVCKTIKEFPPGHYYWSKDG  186 (554)
T ss_pred             HHHHhcCCEEEECCCeEEEECCC
Confidence            5543    23899999943 345

>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated

Probab=99.93  E-value=1.1e-23  Score=220.93  Aligned_cols=312  Identities=19%  Similarity=0.176  Sum_probs=220.8

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEe
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTME  352 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~  352 (636)
                      .|.+.+.+.|+.+++.+.....            ..   +...+.++++|+++|+|+|+.++..++.++.+..++++...
T Consensus         3 ~m~~~~~~~~~q~~~a~~~~~~------------~~---~~~~~~~~~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~   67 (337)
T PRK08674          3 GMLEEYLNWPEQFEEALEIAIS------------LD---LEEDLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFVN   67 (337)
T ss_pred             hHHHHHHhHHHHHHHHHHhhhc------------cc---hhhhhcCCCEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEe
Confidence            4778888889988887643222            11   22335689999999999999999999988755557777665


Q ss_pred             eccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCe----eEEcCCCCcccccch
Q 006659          353 IASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHC----GVHINAGAEIGVAST  428 (636)
Q Consensus       353 ~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~----~l~~~~~~e~~~~~t  428 (636)
                      ....   .+...+++|++|++|.||+|++++++++.|+++|+++|+||+  +++|+++||.    ++.++.+.    ...
T Consensus        68 ~~~~---~~~~~~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~--~~~L~~~a~~~~~~~i~ip~~~----~~r  138 (337)
T PRK08674         68 RDYT---LPAFVDEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS--GGKLKEMAKEHGLPVIIVPGGY----QPR  138 (337)
T ss_pred             Cccc---hhhcCCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC--CchHHHHHHhcCCeEEEeCCCC----cch
Confidence            4322   233458999999999999999999999999999999999997  5689999887    77776432    233


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHH
Q 006659          429 KAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALE  507 (636)
Q Consensus       429 ~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e  507 (636)
                      .++...+..++.+...++.... ...+++++.+.++++++.+....+. .+.++++|.++.+...+++ |+|..++.|+.
T Consensus       139 ~s~~~ll~~l~~~l~~~Gl~~~-~~~d~~~~~~~l~~~~~~~~~~~~~~~~~A~~lA~~~~~~~pv~~-gs~~~~~~a~~  216 (337)
T PRK08674        139 AALGYLFTPLLKILEKLGLIPD-KSAEVLETKIVLSELAEGLKEKVPTLKNLAKRLAGKLYGRIPVIY-GSGLTLAVAYR  216 (337)
T ss_pred             hhHHHHHHHHHHHHHHcCCCcc-chhhHHHHHHHHHHHHHhhCcCCCcccCHHHHHHHHHhCCCCEEE-eCcccHHHHHH
Confidence            3333333333333322322221 2236777777777777665543333 6778899999888656655 79999999999


Q ss_pred             HHHHHHHhccccccccccccccccccccccCCC----CeEEEEeCCcchH----HHHHHHHHHHhcCCeEEEEecCCCCc
Q 006659          508 GALKVKEVALMHSEGILAGEMKHGPLALVDENL----PILVIATRDACFS----KQQSVIQQLHARKGRLIVMCSKGDAA  579 (636)
Q Consensus       508 ~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~----~vi~l~~~~~~~~----~~~~~~~~~~~~g~~v~vi~~~~~~~  579 (636)
                      ++..+.|++++++.....+|..|+.+..++.+.    .+.++.-.+...+    +.....+.++++|..++.|..++.. 
T Consensus       217 ~~~~~~Ena~~~~~~~~~pe~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~~~g~~-  295 (337)
T PRK08674        217 WKTQINENAKYPAFYNEIPELNHNEIVGYERPQSLLKYFFVVVLRDSEHPRIKKRVEITIDILTEAVINVIEIYPEGNS-  295 (337)
T ss_pred             HHHHHHHhcCCccccccCCcccccceeeccCchhhccceEEEEEcCCccHHHHHHHHHHHHHHHhcCCCeEEEecCCCc-
Confidence            999999999999999999999999998877542    2333332222222    2233344456778888888765421 


Q ss_pred             CCCCCCcceEEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCCCCCCCCC
Q 006659          580 SIFPGGSCRVIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYNVDQPRNL  629 (636)
Q Consensus       580 ~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~pd~pr~l  629 (636)
                                        .+..+.+++ .+++.++|+|..+|+||..-..+
T Consensus       296 ------------------~~~~l~~L~~~~d~as~~la~~~gvdP~~~~~i  328 (337)
T PRK08674        296 ------------------PLARIFSLIYLGDFASLYLAELRGVDPTPVPII  328 (337)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCcccchH
Confidence                              334555555 57999999999999999876554

>cd03766 Gn_AT_II_novel Gn_AT_II_novel

Probab=99.93  E-value=1.6e-25  Score=212.49  Aligned_cols=149  Identities=21%  Similarity=0.247  Sum_probs=120.5

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||+|+++.....  ......+..|+.+|+|||||+.|++..+..                                  
T Consensus         1 MCGI~~~~~~~~~~--~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~----------------------------------   44 (181)
T cd03766           1 MCGILCSVSPSGPH--INSSLLSEELLPNLRNRGPDYLSTRQLSVT----------------------------------   44 (181)
T ss_pred             CCcEEEEEeCCCCc--ccchhhHHHHHHHHHhcCCCccCCEEeecc----------------------------------
Confidence            99999999753211  001245778999999999999999886431                                  


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                                    .+++.+||+|++..|.  ..+.||+... .++++++|||+|||+.+|++          +.||+|+
T Consensus        45 --------------~~~~~l~~~rL~i~~~--~~~~QP~~~~-~~~~~lv~NGeIyN~~~l~~----------s~sDtEv   97 (181)
T cd03766          45 --------------NWTLLFTSSVLSLRGD--HVTRQPLVDQ-STGNVLQWNGELYNIDGVED----------EENDTEV   97 (181)
T ss_pred             --------------ccEEEEEeeEEEecCC--CCCCCCCEeC-CCCEEEEECCEEECcccccC----------CCCHHHH
Confidence                          1458999999999985  3579999876 56899999999999998875          6899999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK  225 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~  225 (636)
                      |+++|.+...            -.+++.+++++|+|+|||+++|.. .++||++||+   ||||++..
T Consensus        98 i~~l~~~~g~------------~~~~i~~~~~~L~G~fA~vi~d~~-~~~l~~aRD~~G~rPL~y~~~  152 (181)
T cd03766          98 IFELLANCSS------------ESQDILDVLSSIEGPFAFIYYDAS-ENKLYFGRDCLGRRSLLYKLD  152 (181)
T ss_pred             HHHHHHHHhh------------hHHHHHHHHHhcccceEEEEEeCC-CCEEEEEECCCCCcCcEEEee
Confidence            9999974321            126788999999999999999976 6899999999   88888876

This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase

Probab=99.93  E-value=2.2e-25  Score=249.45  Aligned_cols=150  Identities=23%  Similarity=0.354  Sum_probs=130.4

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||+|++.++..   ......+..|+.+|+|||||+.|++..                                     
T Consensus         1 McGI~G~~~~~~~---~~~~~~~~~m~~~l~hRGPD~~g~~~~-------------------------------------   40 (589)
T TIGR03104         1 MCGICGEIRFDGQ---APDVAAVVRMLAVLAPRGPDAGGVHAQ-------------------------------------   40 (589)
T ss_pred             CcEEEEEEecCCC---cchHHHHHHHHHhhcCCCCCcCCcEec-------------------------------------
Confidence            9999999976532   122356888999999999999999864                                     


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                                     +++++||+|+++.+. +..+.||+... +++++++|||+|||+.+|+++|...|+.|.+.+|+|+
T Consensus        41 ---------------~~~~lgh~rl~i~~~-~~~~~QP~~~~-~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Ev  103 (589)
T TIGR03104        41 ---------------GPVALGHRRLKIIDL-SEASQQPMVDA-ELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEV  103 (589)
T ss_pred             ---------------CCEEEEEEeeEecCC-CcCCCCCeECC-CCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHH
Confidence                           348999999999975 44789999876 6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                      ++++|.    +||              .+++++|+|+|||++||.. .++++++||+   +|||+...+
T Consensus       104 il~~y~----~~G--------------~~~~~~l~G~fa~~i~d~~-~~~l~laRD~~G~kPLyy~~~~  153 (589)
T TIGR03104       104 ILKAYH----AWG--------------RDCVSRFNGMFAFAIWERD-SGRLLLARDRLGIKPLYYAEDA  153 (589)
T ss_pred             HHHHHH----HHH--------------HHHHHHhhcceEEEEEeCC-CCEEEEEecCCCCCCeEEEEeC
Confidence            999998    565              7899999999999999987 6899999999   899988765

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type

Probab=99.92  E-value=7e-25  Score=221.24  Aligned_cols=163  Identities=25%  Similarity=0.305  Sum_probs=128.7

Q ss_pred             cCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCC
Q 006659           33 RGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPA  112 (636)
Q Consensus        33 RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~  112 (636)
                      +.+|||||++++..             ++.+.++|+++.+.+..  .+..       +...++++++|||+||||.|..+
T Consensus        39 ~h~DgwGia~~~~~-------------~~~~~~~k~~~~~~~~~--~~~~-------~~~~~~~~~~l~H~R~At~G~~~   96 (257)
T cd01908          39 VHADGWGIGWYEGK-------------GGRPFRYRSPLPAWSDI--NLES-------LARPIKSPLVLAHVRAATVGPVS   96 (257)
T ss_pred             cCCCCcEEEEecCC-------------CCeeeeeCCCCCCcCCc--chHH-------hhccccccEEEEEEecCCCCCCc
Confidence            37899999999731             12689999986543321  1111       11356789999999999999888


Q ss_pred             CCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCC-CccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHH
Q 006659          113 PRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHG-FTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVM  191 (636)
Q Consensus       113 ~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g-~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (636)
                      ..|+|||...   +|+|+|||+|.|+.+|+..|...+ ..+.+.||||++++++.+.+...+ +  .+...+.+++++++
T Consensus        97 ~~n~hPf~~~---~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~-~--~~~~~~~~al~~~~  170 (257)
T cd01908          97 LENCHPFTRG---RWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERD-P--LDPAELLDAILQTL  170 (257)
T ss_pred             cccCCCcccC---CEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcC-C--cchHHHHHHHHHHH
Confidence            8999999875   899999999999999999999887 678999999999999998775421 0  00012789999999


Q ss_pred             HHhh-----hhhheeEEecCCCCeEEEEEcC--CceEEEecc
Q 006659          192 RHLE-----GAYALIFKSQHYPNELIACKRG--SPLLLGVKD  226 (636)
Q Consensus       192 ~~l~-----G~~a~~~~d~~~~~~l~~~Rd~--~pL~~G~~~  226 (636)
                      ++|+     |.|+|++.|   +++|+++||+  +||+++...
T Consensus       171 ~~l~~~~~~~~~n~~~~d---g~~l~a~r~~~~~~L~~~~~~  209 (257)
T cd01908         171 RELAALAPPGRLNLLLSD---GEYLIATRYASAPSLYYLTRR  209 (257)
T ss_pred             HHHHHhCcCeEEEEEEEC---CCEEEEEEeCCCCceEEEecc
Confidence            9999     678887777   6899999999  799999863

YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=99.92  E-value=2.4e-24  Score=200.53  Aligned_cols=152  Identities=51%  Similarity=0.788  Sum_probs=138.4

Q ss_pred             HHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHH
Q 006659          479 EMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSV  558 (636)
Q Consensus       479 ~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~  558 (636)
                      +++++++.+...++++++|+|.+|++|+|+++||+|+.++++.+++.+||+|||+..+++++++|++.++|++.+++.++
T Consensus         2 ~~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~   81 (153)
T cd05009           2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL   81 (153)
T ss_pred             hHHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHH
Confidence            35677888889999999999999999999999999999999999999999999999999999999999888888889999


Q ss_pred             HHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceee
Q 006659          559 IQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVT  634 (636)
Q Consensus       559 ~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~  634 (636)
                      ++.+++.|+++++|++.+.. .   ...+..+.+|...+.++|+++++|+|+|++++|..+|+|||.||+++|++.
T Consensus        82 ~~~~~~~~~~vi~it~~~~s-~---~~~d~~i~~~~~~~~~~~~~~~~~~q~la~~~a~~~g~~~~~~~~~~k~~~  153 (153)
T cd05009          82 IKEVKARGAKVIVITDDGDA-K---DLADVVIRVPATVEELSPLLYIVPLQLLAYHLAVARGIDPDKPRNLAKSVT  153 (153)
T ss_pred             HHHHHHcCCEEEEEecCCcc-c---ccCCeEEECCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccCccC
Confidence            99999999999999987653 1   135678889977777999999999999999999999999999999999863

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=99.91  E-value=4.1e-24  Score=242.68  Aligned_cols=149  Identities=23%  Similarity=0.347  Sum_probs=129.0

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||+|++.++...  ......+..|+.+|+|||||+.|++..                                     
T Consensus         1 McGI~G~~~~~~~~--~~~~~~~~~m~~~l~hRGpD~~g~~~~-------------------------------------   41 (628)
T TIGR03108         1 MCGITGIFDLTGQR--PIDRDLLRRMNDAQAHRGPDGGGVHVE-------------------------------------   41 (628)
T ss_pred             CCEEEEEEECCCCc--cccHHHHHHHHHHhcCCCCCccCeEee-------------------------------------
Confidence            99999999654211  112356778999999999999999874                                     


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                                     ++++|||+|+++.+.  ..+.||+... +++++++|||+|||+.+|+++|...|+.|.+.||+|+
T Consensus        42 ---------------~~~~lgh~rl~i~d~--~~~~qP~~~~-~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Ev  103 (628)
T TIGR03108        42 ---------------PGIGLGHRRLSIIDL--SGGQQPLFNE-DGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEV  103 (628)
T ss_pred             ---------------CCEEEEEEeeeecCC--CCCCCCcCcC-CCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHH
Confidence                           238999999999875  3689999876 7789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK  225 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~  225 (636)
                      |+++|+    +||              .+++++|+|+|||++||.. .++++++||+   +|||++..
T Consensus       104 i~~~~~----~~g--------------~~~~~~l~G~fa~~~~d~~-~~~l~~~rD~~G~~PLyy~~~  152 (628)
T TIGR03108       104 IVHAWE----EWG--------------EACVERFRGMFAFALWDRN-QETLFLARDRLGIKPLYYALL  152 (628)
T ss_pred             HHHHHH----HHH--------------HHHHHHcCCCEEEEEEECC-CCEEEEEECCCCCcceEEEEe
Confidence            999997    455              7899999999999999987 6899999999   99999974

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>PF13522 GATase_6: Glutamine amidotransferase domain

Probab=99.90  E-value=1.5e-23  Score=189.27  Aligned_cols=113  Identities=35%  Similarity=0.614  Sum_probs=100.6

Q ss_pred             cccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhcc
Q 006659           94 FSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKAN  173 (636)
Q Consensus        94 ~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~  173 (636)
                      ..+.++|||+||||+|.+...++|||... .++++++|||+|+|+.+||++|...|+.+.+.||||+|++++.    ++|
T Consensus        10 ~~~~~~lgH~R~AT~G~~~~~~~hPf~~~-~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~----~~g   84 (133)
T PF13522_consen   10 LDGEAALGHTRYATVGSPTEENNHPFSNR-DGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIH----RWG   84 (133)
T ss_pred             cCCCEEEEEeecCCCCCCCCcCCCCCcCC-CCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHH----HHH
Confidence            46889999999999999866677999333 6689999999999999999999999999999999999999994    443


Q ss_pred             ccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          174 EEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                                    ++++++++|.|++++++.. +++++++||+   |||++|..+
T Consensus        85 --------------~~~l~~l~G~~a~~~~~~~-~~~l~~~rd~~g~~PL~~~~~~  125 (133)
T PF13522_consen   85 --------------EEALERLDGAFAFAVYDKT-PNKLFLARDPLGIRPLYYGRDG  125 (133)
T ss_pred             --------------HHHHHHhcCceEEEEEEcC-CCEEEEEEcCCCCCCEEEEEcC
Confidence                          6788999999999999985 7999999999   999999976

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group

Probab=99.90  E-value=1.6e-23  Score=217.82  Aligned_cols=150  Identities=25%  Similarity=0.441  Sum_probs=116.4

Q ss_pred             CCCcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH
Q 006659           60 GCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE  139 (636)
Q Consensus        60 ~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~  139 (636)
                      +.+.-|||+.+.+.++. ++|.++.      +..+.++++|||+||+|+|.+++.++|||.       +++|||+|.|+.
T Consensus       166 S~~tivYKg~~~~~~l~-~~y~Dl~------~~~~~s~~~i~H~RysTnt~p~w~~AqPf~-------~laHNGeInt~~  231 (361)
T PF00310_consen  166 SSRTIVYKGMGTPEQLA-EFYPDLQ------DEDFKSHFAIGHQRYSTNTFPSWENAQPFR-------ALAHNGEINTIR  231 (361)
T ss_dssp             ESSEEEEEECC-GGGHH-HHCCGGG------CTTEEBSEEEEEEEE-SSSSCSGGGSSSEE-------EEEEEEEETTHH
T ss_pred             CcchhhhhhccCHHHHH-HHHHhhc------cccccceEEEEEEecCCCCCCcchhcChHH-------HhhhccccccHH
Confidence            66778899999999887 7776653      246789999999999999999999999996       899999999999


Q ss_pred             HHHHHHHhCCCcccc----------------CCHhhHHHHHHHHHHhhcc-------------ccCC----CCCCCHHHH
Q 006659          140 VLKETLIRHGFTFES----------------ETDTEVIPKLAKFVFDKAN-------------EEEG----DQPVTFSQV  186 (636)
Q Consensus       140 ~l~~~l~~~g~~~~~----------------~tDsE~i~~l~~~~~~~~~-------------~~~~----~~~~~~~~~  186 (636)
                      .+++.+..++..+.+                .||||++.++++..+....             +...    .+..++.++
T Consensus       232 ~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~  311 (361)
T PF00310_consen  232 GNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEY  311 (361)
T ss_dssp             HHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHH
T ss_pred             HHHHHHHhhcccccCccccchhhcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHH
Confidence            999999988888776                8999999999997764420             0000    012346788


Q ss_pred             HHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          187 VVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       187 ~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                      ++.+++.++|+|++++.|   ++.++++||+   ||+++|...
T Consensus       312 ~~~~~~~~dGPaai~~~~---g~~~~a~~Dr~GLRP~~~~~~~  351 (361)
T PF00310_consen  312 HASLMEPWDGPAAIIFTD---GNGVGAFLDRNGLRPLRYGITE  351 (361)
T ss_dssp             HHHHHCC--CCEEEEEEC---SSEEEEEE-TT--S--EEEEET
T ss_pred             HHHhhccCCCceEEEEEe---CCEEEEEECCCCCcceEEEEEC
Confidence            888888999999999998   6789999999   999999983

This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.89  E-value=2.7e-22  Score=201.81  Aligned_cols=292  Identities=21%  Similarity=0.257  Sum_probs=201.9

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      ||||++++....   ........+..-.++.|||||-+|.+..+.                                   
T Consensus         1 MCGI~Av~~~~~---~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~-----------------------------------   42 (543)
T KOG0571|consen    1 MCGILAVLGHED---SEAKKPKALELSRRIRHRGPDWSGLAQRND-----------------------------------   42 (543)
T ss_pred             CCceeeeecccc---hhhcChhhhhHHHhhcCCCCCcchhheecc-----------------------------------
Confidence            999999996321   122234555667789999999999877643                                   


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                                       ..+||-|+|..+.  ...+||.... ++.+++.+||+|||+.+||+.+.  .+.+++.+|.|+
T Consensus        43 -----------------~~l~heRLAIvdp--~sg~QPi~~~-~~~~~~~vNGEIYNH~~Lr~~~~--~~~~~T~sDcEv  100 (543)
T KOG0571|consen   43 -----------------NILGHERLAIVDP--TSGAQPIVGE-DGTYVVTVNGEIYNHKKLREHCK--DFEFQTGSDCEV  100 (543)
T ss_pred             -----------------ccccccceeEecC--CcCCcccccC-CCcEEEEECceeccHHHHHHHhh--hcccccCCCcee
Confidence                             2678999999987  4579999887 77888889999999999999987  478899999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSI  231 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~  231 (636)
                      |+++|.+    .|             +.++...|+|.|+|+++|.. .++++++|||   +|||+|...      +|+..
T Consensus       101 Ii~lY~k----hg-------------~~~~~~~LDG~Fafvl~d~~-~~kv~~aRDpiGv~~lY~g~~~~gs~~~aSe~k  162 (543)
T KOG0571|consen  101 IIHLYEK----HG-------------GEQAICMLDGVFAFVLLDTK-DDKVVAARDPIGVTPLYYGWDSDGSVYFASEMK  162 (543)
T ss_pred             eeehHhh----cC-------------chhHHHHhhhheEEEEecCC-CCeEEeccCCcCceeeEEEecCCCcEEEeeehh
Confidence            9999984    32             27899999999999999987 6899999999   899999887      45555


Q ss_pred             ccccee----eccCCCeeeC-CCcccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccc
Q 006659          232 LKFDNA----KGRNGGTYAR-PASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLL  306 (636)
Q Consensus       232 ~~~~~~----~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~  306 (636)
                      ++-+..    ..+||+.+.. .|...|.++|-++... +.-.+++...++..++. ...++.                  
T Consensus       163 ~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~-~~s~p~d~~~~r~~~~~-aV~KRL------------------  222 (543)
T KOG0571|consen  163 CLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWFDEN-IPSTPLDYLALRHTLEK-AVRKRL------------------  222 (543)
T ss_pred             hhhhhhhceeecCCcceeecccccccCCCCchhhhcc-CCCCcccHHHHHHHHHH-HHHHHh------------------
Confidence            655533    5889999543 4568899999888866 44456666444443321 111111                  


Q ss_pred             cchHHHHHHHcCCC-eEEEE-eechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHH
Q 006659          307 GGLKDHLKTIRRSR-RIVFI-GCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~-~I~i~-G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~  384 (636)
                               +.+.. -|.+- |--+|..|+..++. +.+.. ..  .  +.         ...+..|++-   +++++++
T Consensus       223 ---------M~d~p~GvLLSGGLDSSLvAsia~R~-lk~~~-~~--~--~~---------~lhsFaIGle---~SPDL~a  275 (543)
T KOG0571|consen  223 ---------MTDVPFGVLLSGGLDSSLVASIAARE-LKKAQ-AA--R--GS---------KLHSFAIGLE---DSPDLLA  275 (543)
T ss_pred             ---------hccCceeEEeeCCchHHHHHHHHHHH-HHHhh-hh--c--CC---------CceEEEecCC---CChhHHH
Confidence                     11211 13333 33466665555544 33321 00  0  00         1233444443   6899999


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEc
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHI  417 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~  417 (636)
                      +=+.|+-.|...--.|-+..--|..+-|+...+
T Consensus       276 arkVAd~igt~Hhe~~ft~qegidal~eVI~hL  308 (543)
T KOG0571|consen  276 ARKVADFIGTIHHEHTFTIQEGIDALDEVIYHL  308 (543)
T ss_pred             HHHHHHHhCCcceEEEEcHHHHHHHHHHHheee
Confidence            999999999877666666566666665554433

>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase

Probab=99.89  E-value=7.2e-21  Score=195.31  Aligned_cols=273  Identities=18%  Similarity=0.176  Sum_probs=189.8

Q ss_pred             HHcCCCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcC
Q 006659          315 TIRRSRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENG  393 (636)
Q Consensus       315 ~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g  393 (636)
                      .++.+++|+++|+|+|..+|.+++.++.+.+ ++++.....  + ......+++|++|++|.||+|.+++.+++.|+++|
T Consensus        17 ~~~~~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~~d--~-~l~~~~~~~dlvI~iS~SG~t~e~~~a~~~A~~~g   93 (308)
T TIGR02128        17 ILKIYDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVVKD--Y-RLPRFVDGKTLLIAVSYSGNTEETLSAVEEAKKKG   93 (308)
T ss_pred             HHhcCCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEEcC--c-cccccCCCCeEEEEEcCCCCCHHHHHHHHHHHHcC
Confidence            3445899999999999999999999999876 466665433  2 22345689999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCcccccc----CeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHH
Q 006659          394 ALCVGITNTVGSAIARKT----HCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNK  469 (636)
Q Consensus       394 ~~vi~IT~~~~s~La~~a----d~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~  469 (636)
                      +++|+||+  +++|++.|    +.++.++.+.    +...++..+++.+..+.....   +...   ++....+.. |+ 
T Consensus        94 ~~ii~iT~--~g~L~~~a~~~~~~~i~vP~~~----~~R~s~~~~~~~~l~~l~~~~---g~d~---~~~~~~l~~-~~-  159 (308)
T TIGR02128        94 AKVIAITS--GGRLEEMAKERGLDVIKIPKGL----QPRAAFPYLLTPLILMLIKPL---GIDI---EEAELLEGG-LD-  159 (308)
T ss_pred             CEEEEECC--CcHHHHHHHhcCCeEEEcCCCC----CCeeeHHHHHHHHHHHHHHHc---CCCh---HHHHHHhcC-Cc-
Confidence            99999997  46899998    6777777642    234444333333222222111   1111   111111211 11 


Q ss_pred             HHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccC---CCCeEEE
Q 006659          470 VREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDE---NLPILVI  545 (636)
Q Consensus       470 ~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~---~~~vi~l  545 (636)
                          .+. .+.++++|.++.+...++ .|.++..++|++++..|.|++++||....++|..|+.+..++.   ...+++|
T Consensus       160 ----~~~~~n~Ak~LA~~l~~~~pvi-~~~~~~~~~A~R~k~~l~enak~~a~~~~lpe~~hn~i~~~~~~~~~~~~~~~  234 (308)
T TIGR02128       160 ----TPKLKALAKRLAEEIYNRIPVI-YSSSPTRPIAERWKNEINENAKSPAYYNILPELNHNEIEGLEDPYGLYEIVFM  234 (308)
T ss_pred             ----cccccCHHHHHHHHhhCCCCEE-EeCCccHHHHHHHHHHHHhhcCCccccccCCcccccceeeeccccccceEEEe
Confidence                122 688999999998865544 4665588899999999999999999999999999999998873   3334444


Q ss_pred             EeC-CcchH-HHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCC
Q 006659          546 ATR-DACFS-KQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYN  622 (636)
Q Consensus       546 ~~~-~~~~~-~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~  622 (636)
                      ..+ +..+. +-..+++++  .|..+..|...+.                   +.+..+++++ .+.+.++|||+.+|+|
T Consensus       235 ~d~~d~~~~~~r~~~~~~~--~~~~~~~i~~~g~-------------------~~l~~l~~li~~~d~as~yLA~~~g~d  293 (308)
T TIGR02128       235 SDESDHSRCPKRVDITEKI--LGVVFISIYSRGN-------------------SLLARILSLIHLAGYVSVKLAELRGVD  293 (308)
T ss_pred             eccccchhHHHHHHHHHHH--hCCceEEEEecCC-------------------CHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            432 22211 112344444  3767777665442                   3566777666 4699999999999999


Q ss_pred             CCCCCCCc
Q 006659          623 VDQPRNLA  630 (636)
Q Consensus       623 pd~pr~l~  630 (636)
                      |..-..+.
T Consensus       294 P~~~~~i~  301 (308)
T TIGR02128       294 PEPVPPID  301 (308)
T ss_pred             CccccHHH
Confidence            98766554

This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=99.87  E-value=3.9e-22  Score=218.96  Aligned_cols=148  Identities=26%  Similarity=0.404  Sum_probs=126.0

Q ss_pred             EEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHHHH
Q 006659            4 IFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEV   83 (636)
Q Consensus         4 I~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~~~   83 (636)
                      |+|++.+++...  .....+..|+.+|+|||||+.|++..+                                       
T Consensus         1 i~g~~~~~~~~~--~~~~~~~~m~~~l~hRGPD~~g~~~~~---------------------------------------   39 (467)
T TIGR01536         1 IAGFFDLDDKAV--EEDEAILRMSDTIAHRGPDASGIEYKD---------------------------------------   39 (467)
T ss_pred             CEEEEecCCcch--hhHHHHHHHHHHhhCcCCCcCCcEEcc---------------------------------------
Confidence            678887664321  113468889999999999999998221                                       


Q ss_pred             hhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHH
Q 006659           84 AETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPK  163 (636)
Q Consensus        84 ~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~  163 (636)
                                  +++++||+|+++.+..  .+.||+... ++++++++||+|||+.+|+++|...|+.|.+.||+|++++
T Consensus        40 ------------~~~~lgh~rl~i~d~~--~~~qP~~~~-~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~  104 (467)
T TIGR01536        40 ------------GNAILGHRRLAIIDLS--GGAQPMSNE-GKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILH  104 (467)
T ss_pred             ------------CCEEEEEEEeEEeCCC--CCCCeeECC-CCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHH
Confidence                        3489999999999863  358999877 6789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          164 LAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                      +|.    +||              .+++++|+|+|+|++||.. .++|+++||+   +|||++..+
T Consensus       105 ~y~----~~g--------------~~~~~~l~G~fa~~i~D~~-~~~l~laRD~~G~kPLyy~~~~  151 (467)
T TIGR01536       105 LYE----EWG--------------EECVDRLDGMFAFALWDSK-KGELFLARDRFGIKPLYYAYDG  151 (467)
T ss_pred             HHH----HHH--------------HHHHHHcCCcEEEEEEECC-CCEEEEEECCCCCcCeEEEEEC
Confidence            997    565              7899999999999999987 6999999999   999998876

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=99.83  E-value=5.8e-20  Score=165.12  Aligned_cols=125  Identities=50%  Similarity=0.729  Sum_probs=114.6

Q ss_pred             eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEE
Q 006659          321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGIT  400 (636)
Q Consensus       321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT  400 (636)
                      +|+|+|+|+|+.+|.++++++.++++.++....+.++.+....++++|++|++|+||+|++++++++.||++|+++|+||
T Consensus         1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT   80 (126)
T cd05008           1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAIT   80 (126)
T ss_pred             CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEE
Confidence            59999999999999999999999887888887777776666668899999999999999999999999999999999999


Q ss_pred             cCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHH
Q 006659          401 NTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAI  445 (636)
Q Consensus       401 ~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~  445 (636)
                      ++++|||+++||++|.++.++|.....+.++++++..+++++..+
T Consensus        81 ~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~~~~~~l~l~~~~~  125 (126)
T cd05008          81 NVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLLALAL  125 (126)
T ss_pred             CCCCChHHHhCCEEEEecCCCcceechhhhHHHHHHHHHHHHHHh
Confidence            999999999999999998887887778899999999999988764

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=99.83  E-value=7.1e-20  Score=191.21  Aligned_cols=158  Identities=15%  Similarity=0.207  Sum_probs=128.1

Q ss_pred             CcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHH
Q 006659           62 PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVL  141 (636)
Q Consensus        62 ~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l  141 (636)
                      +..|||+.|.+.++. .+|.++.      +..+.+.++++|+||+||+.+++.++|||.       .++|||+|+|+..+
T Consensus       174 ~~iVyKGm~~~~~v~-~~Y~DL~------~~~~~s~~al~H~RfSTNT~p~W~~AqPfr-------~laHNGEInT~~gn  239 (413)
T cd00713         174 RTIVYKGMLLPEQLG-QFYPDLQ------DPRFESAFALVHSRFSTNTFPSWPLAQPFR-------YLAHNGEINTIRGN  239 (413)
T ss_pred             ceEEEeccccHHHHH-HhccccC------cccceEEEEEEEEecCCCCCCCcccCCcce-------eEEEcccccCHHHH
Confidence            789999999988877 7887653      246789999999999999999999999996       48999999999999


Q ss_pred             HHHHHhCCCc-----------------cccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHH----------------
Q 006659          142 KETLIRHGFT-----------------FESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVV----------------  188 (636)
Q Consensus       142 ~~~l~~~g~~-----------------~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------  188 (636)
                      ++.+..+...                 ..+.||||++.++++..... |       .++.+|+.                
T Consensus       240 r~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~-g-------~~l~~A~~mliPeaw~~~~~m~~~  311 (413)
T cd00713         240 RNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRS-G-------RSLPEAMMMLIPEAWQNNPTMDPE  311 (413)
T ss_pred             HHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHc-C-------CCHHHHHHHhCChhhccCccCCHH
Confidence            9988653211                 13589999999999876643 2       46777777                


Q ss_pred             ---------HHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccccccce--------eeccCCC
Q 006659          189 ---------EVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSILKFDN--------AKGRNGG  243 (636)
Q Consensus       189 ---------~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~~~~~~--------~~~~~g~  243 (636)
                               .+++.++|+|++++.|   ++.++++||+   |||++|...     .+++++.++.        +.+.||+
T Consensus       312 ~r~fYey~~~~me~~dGp~aiv~~d---g~~i~a~rDrnGlRPl~~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe  388 (413)
T cd00713         312 LRAFYEYHSSLMEPWDGPAAIAFTD---GRQVGASLDRNGLRPARYVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGE  388 (413)
T ss_pred             HHHHHHHHHHHhccCCCcEEEEEEe---CCEEEEEeCCCCCcceEEEEECCCEEEEEeCCcccCCCcceeeecCCCCCCe
Confidence                     6778899999999988   6899999999   999999765     3445555542        2678898


Q ss_pred             e
Q 006659          244 T  244 (636)
Q Consensus       244 ~  244 (636)
                      +
T Consensus       389 ~  389 (413)
T cd00713         389 M  389 (413)
T ss_pred             E
Confidence            8

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>COG1737 RpiR Transcriptional regulators [Transcription]

Probab=99.78  E-value=6.2e-18  Score=172.66  Aligned_cols=148  Identities=22%  Similarity=0.220  Sum_probs=123.9

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETA  380 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~  380 (636)
                      +.+++++++++++.|.++++|+++|.|+|..+|.++++.|.++ |.++........ ......++++|++|+||+||+|+
T Consensus       113 ~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~i-g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~  191 (281)
T COG1737         113 NLLDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRI-GLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTR  191 (281)
T ss_pred             HhcCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHc-CCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcH
Confidence            4567889999999999999999999999999999999999997 555555444433 33455689999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCccccc-chhhHHHHHHHHHHHHHHHhcCCC
Q 006659          381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVA-STKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~-~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      +++++++.||++|+++|+||++..|||++.||++|.++...+.... .+.+..++++++.+|...+....+
T Consensus       192 e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L~~~~~~~~~  262 (281)
T COG1737         192 EIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEESFFRSPISSRIAQLALIDALITAVAQRRG  262 (281)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999775544332 234677788888888888876653

>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D

Probab=99.76  E-value=3.4e-19  Score=179.78  Aligned_cols=184  Identities=20%  Similarity=0.246  Sum_probs=85.1

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhcccc------CCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchh
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYR------GYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIES   74 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~R------G~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~   74 (636)
                      ||-+||+-+..+.        .+...|..+..|      -+||||++++++.               ...++|++.++.+
T Consensus         1 MC~Llg~s~~~p~--------~~~~sl~~~~~~~~~~~~h~DGwGiawy~~~---------------~~~~~k~~~pa~~   57 (271)
T PF13230_consen    1 MCRLLGMSSNRPT--------DINFSLTSFAARGGKTPPHPDGWGIAWYDGG---------------GPRVFKSPRPAWN   57 (271)
T ss_dssp             -------------------------------------------EEEEEESSS---------------S-EEEEESS-CCC
T ss_pred             Ccccccccccccc--------ccccccccccccccCcCCCCCeeEEEEEeCC---------------eEEEEECCCCCcC
Confidence            9999999864321        122233333333      3899999999865               7899999875433


Q ss_pred             hhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccc
Q 006659           75 LVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFE  153 (636)
Q Consensus        75 l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~  153 (636)
                      -  ..++.+..      ..+++.++|+|+|.||.|..+..|+|||... .+++|+|+|||.|.+++.++...    +...
T Consensus        58 ~--~~~~~l~~------~~i~S~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~----~~~~  125 (271)
T PF13230_consen   58 S--PNLRLLAD------YKIRSRLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR----YQPV  125 (271)
T ss_dssp             ---HHHHHHHH-------H-EEEEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHH----HT--
T ss_pred             C--chHHHHhh------CCccCCEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc----cccC
Confidence            1  12222211      1356889999999999999999999999975 45789999999999988776322    2367


Q ss_pred             cCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhh--hhhheeEEecCCCCeEEEEEcCCceEEE
Q 006659          154 SETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLE--GAYALIFKSQHYPNELIACKRGSPLLLG  223 (636)
Q Consensus       154 ~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--G~~a~~~~d~~~~~~l~~~Rd~~pL~~G  223 (636)
                      +.||||.++.++...+.+.+...........+++.++.+.+.  |.++|++.|   ++.||+.|+ ++|++-
T Consensus       126 G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsD---G~~l~a~~~-~~l~~~  193 (271)
T PF13230_consen  126 GTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSD---GERLFAHRY-TSLYYL  193 (271)
T ss_dssp             S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE----SS-EEEEEE-ESSS--
T ss_pred             CCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEEC---CceEEEEEc-CCeeEE
Confidence            899999999999887654220000001123445555565554  678888887   689999998 334333

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=99.76  E-value=1.8e-17  Score=158.40  Aligned_cols=146  Identities=21%  Similarity=0.176  Sum_probs=115.4

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e  381 (636)
                      ..++.++++++++.|.++++|+++|+|.|+.+|.++.+.+.++ +..+......  .  ...++++|++|++|+||+|++
T Consensus        13 ~~l~~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~--~--~~~~~~~Dv~I~iS~sG~t~~   87 (179)
T TIGR03127        13 SRIDEEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHL-GFNVYVVGET--T--TPSIKKGDLLIAISGSGETES   87 (179)
T ss_pred             HhCCHHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhC-CCeEEEeCCc--c--cCCCCCCCEEEEEeCCCCcHH
Confidence            4567788999999999999999999999999999998888774 5555544322  1  245789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc-------cchhh--HHHHHHHHHHHHHHHhcCCCCc
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV-------ASTKA--YTSQIVVMAMLALAIGGDTIST  452 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~-------~~t~s--~~~~~~~l~lL~~~~~~~~~~~  452 (636)
                      ++++++.||++|+++|+||++++|||+++||++|.++...+...       ....+  ..+++.++.+|...+.......
T Consensus        88 ~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ild~l~~~~~~~~~~~  167 (179)
T TIGR03127        88 LVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKGLD  167 (179)
T ss_pred             HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCccccCCCCCccccCcCchHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            99999999999999999999999999999999999877543211       11122  2256677777777776665443

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI)

Probab=99.76  E-value=2.5e-17  Score=157.26  Aligned_cols=147  Identities=24%  Similarity=0.191  Sum_probs=117.8

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e  381 (636)
                      +.++.++++++++.|.++++|+++|+|+|+.+|.++.+.+.++ ++.+......    ....++++|++|++|+||+|++
T Consensus        16 ~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~----~~~~~~~~D~vI~iS~sG~t~~   90 (179)
T cd05005          16 DKIDEEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHL-GLNVYVVGET----TTPAIGPGDLLIAISGSGETSS   90 (179)
T ss_pred             HhcCHHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhC-CCeEEEeCCC----CCCCCCCCCEEEEEcCCCCcHH
Confidence            4566788999999999999999999999999999988888764 5666554321    1345789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc--------c-chhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV--------A-STKAYTSQIVVMAMLALAIGGDTIST  452 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~--------~-~t~s~~~~~~~l~lL~~~~~~~~~~~  452 (636)
                      ++++++.||++|+++|+||++.+|||+++||++|.++.+.+...        + .+.+.++++.++.+|...+.......
T Consensus        91 ~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ld~l~~~~~~~~~~~  170 (179)
T cd05005          91 VVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEELGVS  170 (179)
T ss_pred             HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcccccCCCCccccccCccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999988543321        1 11223567778888887777665544


Q ss_pred             H
Q 006659          453 Q  453 (636)
Q Consensus       453 ~  453 (636)
                      .
T Consensus       171 ~  171 (179)
T cd05005         171 E  171 (179)
T ss_pred             H
Confidence            3

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A

Probab=99.75  E-value=3.9e-19  Score=159.05  Aligned_cols=107  Identities=27%  Similarity=0.493  Sum_probs=61.4

Q ss_pred             eeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCC
Q 006659          102 HTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV  181 (636)
Q Consensus       102 H~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~  181 (636)
                      |+||+|.+  +..+.||+.....++++++|||+|+|+++|+++|...|+.+.+.+|+|++++++++ +.+|+        
T Consensus         1 h~rl~~~~--~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~-~~~~~--------   69 (125)
T PF13537_consen    1 HVRLSTDD--SDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEE-YREWG--------   69 (125)
T ss_dssp             --------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH----HG--------
T ss_pred             Cccccccc--ccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHH-HHHHH--------
Confidence            99999944  46789999942267899999999999999999999888888999999999999985 11233        


Q ss_pred             CHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       182 ~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                            ++++++|+|.|||++||.. .++++++||+   |||+++..+
T Consensus        70 ------~~~~~~l~G~fa~v~~d~~-~~~l~~~rD~~G~rpLyy~~~~  110 (125)
T PF13537_consen   70 ------EDFLKRLDGPFAFVIWDKD-KKRLFLARDRFGIRPLYYGRTD  110 (125)
T ss_dssp             ------GGGGGT--EEEEEEEEETT-E--EEEEE-TT--S--EEEEET
T ss_pred             ------HHHHHhCCceEEEEEEeCC-CcEEEEEECCCCCCCeEEEEeC
Confidence                  7899999999999999976 5789999998   899998885

>PF01380 SIS: SIS domain SIS domain web page

Probab=99.75  E-value=1.6e-17  Score=150.09  Aligned_cols=127  Identities=29%  Similarity=0.404  Sum_probs=113.8

Q ss_pred             HcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcc-cCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCC
Q 006659          316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDR-QAPIYREDTAVFVSQSGETADTLQALEYASENGA  394 (636)
Q Consensus       316 l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~  394 (636)
                      |.++++|+++|+|+|+.+|..+++++.++++.........++.+. ...++++|++|++|+||++.+++++++.||++|+
T Consensus         2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~   81 (131)
T PF01380_consen    2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGA   81 (131)
T ss_dssp             HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTS
T ss_pred             CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCC
Confidence            678999999999999999999999999988888888888776554 4567899999999999999999999999999999


Q ss_pred             eEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHH
Q 006659          395 LCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLA  442 (636)
Q Consensus       395 ~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~  442 (636)
                      ++|+||++.++++++.+|++|.++.+++...+.+.++++++.++.++.
T Consensus        82 ~vi~iT~~~~~~l~~~ad~~l~~~~~~~~~~~~~~s~~~~~~~~~~l~  129 (131)
T PF01380_consen   82 PVILITSNSESPLARLADIVLYIPTGEESQSASTSSFSAQLSLLDALF  129 (131)
T ss_dssp             EEEEEESSTTSHHHHHSSEEEEEESSCGSSSSHSHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCchhhhCCEEEEecCCCccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988775667788888888777654

; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....

>PRK15482 transcriptional regulator MurR; Provisional

Probab=99.74  E-value=2.6e-17  Score=169.18  Aligned_cols=147  Identities=19%  Similarity=0.191  Sum_probs=118.0

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETA  380 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~  380 (636)
                      ..++.++++++++.|.++++|+++|+|.|+.+|.++.+.+.++ |..+........ ......++++|++|++|+||+|+
T Consensus       118 ~~id~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~  196 (285)
T PRK15482        118 ALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI-GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKK  196 (285)
T ss_pred             HhcCHHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhC-CCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence            4566788999999999999999999999999999999999885 555555432222 22234578999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCccc-ccchhhHHHHHHHHHHHHHHHhcCC
Q 006659          381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIG-VASTKAYTSQIVVMAMLALAIGGDT  449 (636)
Q Consensus       381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~-~~~t~s~~~~~~~l~lL~~~~~~~~  449 (636)
                      +++++++.|+++|+++|+||++.+|||+++||++|.++.+.... .....+.++++.++.+|...+....
T Consensus       197 ~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~ss~~~~~~~id~L~~~~~~~~  266 (285)
T PRK15482        197 EIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLN  266 (285)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999997754321 1234566777777777776665543

>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]

Probab=99.73  E-value=7.6e-17  Score=164.83  Aligned_cols=166  Identities=23%  Similarity=0.315  Sum_probs=125.7

Q ss_pred             CCCcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH
Q 006659           60 GCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE  139 (636)
Q Consensus        60 ~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~  139 (636)
                      |....|||+.|.+.++. ++|.++.      +..++|.++|+|+|++||..+++..+|||.       .+||||+|.++.
T Consensus       173 s~~t~VYKG~~~p~~V~-~~y~dl~------~~~~~s~~~l~HsRFSTNT~p~W~~AHPfr-------~lvHNGEInT~~  238 (371)
T COG0067         173 SSRTIVYKGVGLPEDVA-EFYLDLD------DERYKSAIALVHTRFSTNTFPSWPLAHPFR-------LLVHNGEINTYG  238 (371)
T ss_pred             CCCeEEEecccCHHHHH-HHHhhcc------chhhceeEEEEEeccCCCCCCCCCccCcce-------eeeecceecccc
Confidence            66678999999999887 6665543      246789999999999999999999999997       459999999999


Q ss_pred             HHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHH---------HHHHhhhhhheeEEecCCCCe
Q 006659          140 VLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVE---------VMRHLEGAYALIFKSQHYPNE  210 (636)
Q Consensus       140 ~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~G~~a~~~~d~~~~~~  210 (636)
                      -.++.+..+++.+.+.+|+|.+..++--.....     .+..++-.+++-         -...|.|+|++..-....++.
T Consensus       239 gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~-----sDs~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~  313 (371)
T COG0067         239 GNRNWLEARGYKFESPTDGEVLAKLLPILMRGG-----SDSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEG  313 (371)
T ss_pred             cHHHHHHHhhcccccCccHHHHHHHHHHhcccC-----CcchhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcce
Confidence            999999999999999999999999986544321     111222222222         224678999998876543567


Q ss_pred             EEEEEcC---CceEEEecc-----CcccccccceeeccCCCe
Q 006659          211 LIACKRG---SPLLLGVKD-----GAVSILKFDNAKGRNGGT  244 (636)
Q Consensus       211 l~~~Rd~---~pL~~G~~~-----~~~~~~~~~~~~~~~g~~  244 (636)
                      ..+.+|+   +|.+.|-..     +++..|+++.-.++|+..
T Consensus       314 ~afye~~~~l~epwdGpa~~~f~dgse~gA~ldrngLrp~Ry  355 (371)
T COG0067         314 RAFYEDHSALMEPWDGPADIVFTDGSEEGAILDRNGLRPARY  355 (371)
T ss_pred             EEEEehhhhCCCCccCCcceeEEeeeeeeeeeccCCCCcceE
Confidence            7888888   777777665     556667777666666666

>cd05014 SIS_Kpsf KpsF-like protein

Probab=99.73  E-value=7.5e-17  Score=145.25  Aligned_cols=122  Identities=23%  Similarity=0.290  Sum_probs=100.0

Q ss_pred             CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEE
Q 006659          320 RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVG  398 (636)
Q Consensus       320 ~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~  398 (636)
                      ++|+++|+|+|+.+|.+++..+.++ +.++....+.+... ....++++|++|++|+||+|++++++++.||++|+++|+
T Consensus         1 ~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~   79 (128)
T cd05014           1 GKVVVTGVGKSGHIARKIAATLSST-GTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA   79 (128)
T ss_pred             CeEEEEeCcHhHHHHHHHHHHhhcC-CCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence            4799999999999999999999774 66666655554432 334568999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccCeeEEcCCCCcc---cccchhhHHHHHHHHHHHH
Q 006659          399 ITNTVGSAIARKTHCGVHINAGAEI---GVASTKAYTSQIVVMAMLA  442 (636)
Q Consensus       399 IT~~~~s~La~~ad~~l~~~~~~e~---~~~~t~s~~~~~~~l~lL~  442 (636)
                      ||++.+|||++.||++|.++.+.+.   ....+.++++++.++.+|.
T Consensus        80 iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~~~~~~~~d~l~  126 (128)
T cd05014          80 ITGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDALA  126 (128)
T ss_pred             EeCCCCCchhhhCCEEEECCCCcccccCCCCchHHHHHHHHHHHHHh
Confidence            9999999999999999999876553   3445667776666666554

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.72  E-value=6e-17  Score=169.93  Aligned_cols=150  Identities=17%  Similarity=0.197  Sum_probs=123.8

Q ss_pred             ccccccchHHHHHHHcCC-CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCC
Q 006659          302 KSVLLGGLKDHLKTIRRS-RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGET  379 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~-~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t  379 (636)
                      +.++. +++++++.+.++ ++|+++|+|+|+++|.++++.|.+ .|.++....+.+..+ ....++++|++|++|+||+|
T Consensus        30 ~~~~~-~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t  107 (326)
T PRK10892         30 QYINQ-DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES  107 (326)
T ss_pred             HHHHH-HHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhc-CCceeEEeChHHhhccccccCCCCCEEEEEeCCCCC
Confidence            34454 689999998777 799999999999999999999987 466666654444322 23457899999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc---ccccchhhHHHHHHHHHHHHHHHhcCCCCcH
Q 006659          380 ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE---IGVASTKAYTSQIVVMAMLALAIGGDTISTQ  453 (636)
Q Consensus       380 ~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e---~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~  453 (636)
                      ++++++++.||++|+++|+||++++|||+++||++|.++++++   .....+.|++++++....|...+...++...
T Consensus       108 ~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g~~~  184 (326)
T PRK10892        108 SEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTA  184 (326)
T ss_pred             HHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999999999999999999999987665   2345678888888888888887777665543

>PRK11557 putative DNA-binding transcriptional regulator; Provisional

Probab=99.72  E-value=5.8e-17  Score=166.14  Aligned_cols=146  Identities=20%  Similarity=0.176  Sum_probs=117.7

Q ss_pred             cccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeec-cchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659          303 SVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIA-SDLVDRQAPIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       303 ~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~dlvI~iS~SG~t~e  381 (636)
                      .++.++++++++.|.++++|+++|+|+|..+|.++.+.|.++ |..+..... .........++++|++|++|+||++++
T Consensus       112 ~~~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~  190 (278)
T PRK11557        112 VNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKI-GINAVAERDMHALLATVQALSPDDLLLAISYSGERRE  190 (278)
T ss_pred             hcCHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhC-CCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHH
Confidence            455688999999999999999999999999999999999886 555544322 222233345789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC-cccccchhhHHHHHHHHHHHHHHHhcCC
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA-EIGVASTKAYTSQIVVMAMLALAIGGDT  449 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~-e~~~~~t~s~~~~~~~l~lL~~~~~~~~  449 (636)
                      ++++++.||++|+++|+||++.+||++++||++|++.... ........+++++++++.+|...+....
T Consensus       191 ~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~~~~~~  259 (278)
T PRK11557        191 LNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQATRSAAISSTHAQGMLTDLLFMALIQQD  259 (278)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999875532 2222356788888888888777776543

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional

Probab=99.71  E-value=5.5e-16  Score=160.07  Aligned_cols=147  Identities=19%  Similarity=0.204  Sum_probs=118.3

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETA  380 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~  380 (636)
                      ..++.+.++++++.|.++++|+++|+|+|..+|.++...+.++ |+.+........ ......++++|++|++|.||+|+
T Consensus       123 ~~l~~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~  201 (292)
T PRK11337        123 SILDVDEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRI-GVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTS  201 (292)
T ss_pred             HhcCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhC-CCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence            3466788999999999999999999999999999998888875 666655543332 22334578999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc-cccchhhHHHHHHHHHHHHHHHhcCC
Q 006659          381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI-GVASTKAYTSQIVVMAMLALAIGGDT  449 (636)
Q Consensus       381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~-~~~~t~s~~~~~~~l~lL~~~~~~~~  449 (636)
                      +++++++.||++|+++|+||++.+||++++||++|.++..... ....+.+.++++.++.+|...+...+
T Consensus       202 ~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~s~~~~~~i~d~L~~~l~~~~  271 (292)
T PRK11337        202 DVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTAQGSPLLGENAAARIAQLNILDAFFVSVAQLN  271 (292)
T ss_pred             HHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998764321 12234566777778888777776553

>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=5.3e-16  Score=145.81  Aligned_cols=144  Identities=19%  Similarity=0.143  Sum_probs=118.7

Q ss_pred             cchHHHHHHHc-CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhccc-CCCCCCcEEEEEcCCCCCHHHHH
Q 006659          307 GGLKDHLKTIR-RSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQ-APIYREDTAVFVSQSGETADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~-~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~dlvI~iS~SG~t~e~i~  384 (636)
                      +.+.++++.|. ..++|+++|+|.|.++|..++..|.. .|.++.+..|.|..+.. +.+.++|++|+||.||+|.+++.
T Consensus        26 ~~~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s-~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~  104 (202)
T COG0794          26 EDFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLAS-TGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLN  104 (202)
T ss_pred             HHHHHHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHc-cCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHH
Confidence            46677777664 48899999999999999888888877 48999999999886654 46899999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc---cchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV---ASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~---~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      ++..+|+.|+++|+||++++|+|++.||++|.++..+|...   +.|.|-+.++..-..++..+...++-
T Consensus       105 ~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l~~gdal~~~L~e~~~f  174 (202)
T COG0794         105 LAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGDALAGTLFEARGF  174 (202)
T ss_pred             HHHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccCccccCcccCCcchhhHHHHhhccHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999776543   34555555666555666666555543

>cd05710 SIS_1 A subgroup of the SIS domain

Probab=99.70  E-value=1.6e-16  Score=141.09  Aligned_cols=100  Identities=26%  Similarity=0.453  Sum_probs=92.1

Q ss_pred             eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhccc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEE
Q 006659          321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQ-APIYREDTAVFVSQSGETADTLQALEYASENGALCVGI  399 (636)
Q Consensus       321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~I  399 (636)
                      +|+++|+|+|+++|..+++++.++.++.+....+.++.... ..++++|++|++|+||+|++++++++.||++|+++|+|
T Consensus         1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~i   80 (120)
T cd05710           1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL   80 (120)
T ss_pred             CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEE
Confidence            59999999999999999999999878888888887775443 45789999999999999999999999999999999999


Q ss_pred             EcCCCCccccccCeeEEcCCC
Q 006659          400 TNTVGSAIARKTHCGVHINAG  420 (636)
Q Consensus       400 T~~~~s~La~~ad~~l~~~~~  420 (636)
                      |++++|||+++||++|.++++
T Consensus        81 T~~~~s~la~~ad~~l~~~~~  101 (120)
T cd05710          81 TDDEDSPLAKLADYVIVYGFE  101 (120)
T ss_pred             ECCCCCcHHHhCCEEEEccCC
Confidence            999999999999999999876

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>PRK11302 DNA-binding transcriptional regulator HexR; Provisional

Probab=99.67  E-value=1.8e-15  Score=155.67  Aligned_cols=147  Identities=20%  Similarity=0.261  Sum_probs=116.5

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETA  380 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~  380 (636)
                      ..++.++++++++.|.++++|+++|+|+|+.+|..++..+.++ ++++........ .......+++|++|++|+||+|+
T Consensus       111 ~~id~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~  189 (284)
T PRK11302        111 QSLDPSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRF-NVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTK  189 (284)
T ss_pred             HhcCHHHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhc-CCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCCH
Confidence            3566788999999999999999999999999999988888774 666655443222 11223568999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc-cccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659          381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI-GVASTKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       381 e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~-~~~~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      +++++++.||++|+++|+||+ .++|++++||++|.++...+. ......+.+++++++.+|...+....+
T Consensus       190 ~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~l~~~~~  259 (284)
T PRK11302        190 SLVELAQLARENGATVIAITS-AGSPLAREATLALTLDVPEDTDIYMPMVSRIAQLTVIDVLATGFTLRRG  259 (284)
T ss_pred             HHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEecCCCccchhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998 799999999999988753322 122345667777788888777765543

>cd05013 SIS_RpiR RpiR-like protein

Probab=99.67  E-value=1.6e-15  Score=138.33  Aligned_cols=134  Identities=26%  Similarity=0.323  Sum_probs=108.4

Q ss_pred             chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCCHHHHHHH
Q 006659          308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGETADTLQAL  386 (636)
Q Consensus       308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~i~al  386 (636)
                      +++++++.|.++++|+++|+|.|..+|..++..+.++ +.++......+... .....+++|++|++|.+|+++++++++
T Consensus         2 ~i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~   80 (139)
T cd05013           2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRL-GKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAA   80 (139)
T ss_pred             HHHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHc-CCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHH
Confidence            4678899999999999999999999999999999986 55665555444432 223467899999999999999999999


Q ss_pred             HHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHH
Q 006659          387 EYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALA  444 (636)
Q Consensus       387 ~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~  444 (636)
                      +.++++|+++|+||++.++++++++|++|.++...+.  .....+.+++.+++++...
T Consensus        81 ~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~~~d~l  136 (139)
T cd05013          81 EIAKERGAKVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALIDAL  136 (139)
T ss_pred             HHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCCccc--cccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876543  2234455555555555443

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.66  E-value=8.4e-16  Score=160.98  Aligned_cols=145  Identities=15%  Similarity=0.146  Sum_probs=115.5

Q ss_pred             cchHHHHHHHcCC-CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCCCHHHHH
Q 006659          307 GGLKDHLKTIRRS-RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGETADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~-~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~t~e~i~  384 (636)
                      +++.++++.+.++ ++|+++|+|+|+.+|.++++.|.++ +.++....+.+. ......++++|++|++|+||+|+++++
T Consensus        29 ~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~  107 (321)
T PRK11543         29 DDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLAST-GTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDL  107 (321)
T ss_pred             HHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcC-CCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHH
Confidence            4577888888776 4999999999999999999999885 666655544443 233456789999999999999999999


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc---cccchhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI---GVASTKAYTSQIVVMAMLALAIGGDTIST  452 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~---~~~~t~s~~~~~~~l~lL~~~~~~~~~~~  452 (636)
                      +++.||++|+++|+||++++|||+++||++|.++...+.   ....+.+.++.++....|...+...++..
T Consensus       108 ~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~ss~~~~~~~~dsL~~~~l~~~g~~  178 (321)
T PRK11543        108 IIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFN  178 (321)
T ss_pred             HHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999988765332   23345666667777777766666655543

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=99.64  E-value=3.2e-15  Score=153.15  Aligned_cols=145  Identities=28%  Similarity=0.364  Sum_probs=114.7

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHH-HHHHHHHHHhcCCc----EEE-----------eeccch------hcccCCC
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAA-LAARPILEELSDLP----VTM-----------EIASDL------VDRQAPI  364 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa-~~~~~~~~~~~~~~----~~~-----------~~~~e~------~~~~~~~  364 (636)
                      +.++.+++.+++.++||++|+|+|...| ..+..++.+++..+    ...           ....+.      ......+
T Consensus        50 ~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l  129 (299)
T PRK05441         50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINL  129 (299)
T ss_pred             HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCC
Confidence            4467888899999999999999999888 66776666654211    110           001111      1112347


Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch--hhHHHHHHHHHHHH
Q 006659          365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST--KAYTSQIVVMAMLA  442 (636)
Q Consensus       365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL~  442 (636)
                      +++|++|++|+||+|++++.+++.||++|+++|+||++++|||++.+|+.|.++.++|....+|  ++.+++.+++++|.
T Consensus       130 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~ls  209 (299)
T PRK05441        130 TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMIS  209 (299)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcCCCCccccccccccchhHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999998888755454  67788999999999


Q ss_pred             HHHhcCCCC
Q 006659          443 LAIGGDTIS  451 (636)
Q Consensus       443 ~~~~~~~~~  451 (636)
                      ..+....+.
T Consensus       210 t~~~~~~gk  218 (299)
T PRK05441        210 TGVMIRLGK  218 (299)
T ss_pred             HHHHHHccH
Confidence            988877654

>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase

Probab=99.63  E-value=1.1e-14  Score=146.34  Aligned_cols=145  Identities=26%  Similarity=0.335  Sum_probs=113.5

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHH-HHHHHHHHHhcCCc----EEEe-----------eccc---h---hcccCCC
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAA-LAARPILEELSDLP----VTME-----------IASD---L---VDRQAPI  364 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa-~~~~~~~~~~~~~~----~~~~-----------~~~e---~---~~~~~~~  364 (636)
                      +.++.+++.|++.+||+++|+|+|...| ..+..++.+++.-+    ....           ...+   .   ......+
T Consensus        37 ~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l  116 (257)
T cd05007          37 RAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINL  116 (257)
T ss_pred             HHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCC
Confidence            4467788889999999999999998877 66777777765311    1111           0000   0   1123446


Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch--hhHHHHHHHHHHHH
Q 006659          365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST--KAYTSQIVVMAMLA  442 (636)
Q Consensus       365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL~  442 (636)
                      +++|++|+||+||+|++++++++.||++|+++|+||++++|+|++.+|+.|.+..++|....++  ++.+++.+++++|.
T Consensus       117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L~  196 (257)
T cd05007         117 TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKAGTAQKLALNMLS  196 (257)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEcCCCCccccCccccccHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999988887643333  57788999999998


Q ss_pred             HHHhcCCCC
Q 006659          443 LAIGGDTIS  451 (636)
Q Consensus       443 ~~~~~~~~~  451 (636)
                      ..+....++
T Consensus       197 t~~~~~~g~  205 (257)
T cd05007         197 TAVMIRLGK  205 (257)
T ss_pred             HHHHHHcch
Confidence            888776654

Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.

>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily

Probab=99.61  E-value=6.2e-15  Score=140.48  Aligned_cols=115  Identities=22%  Similarity=0.241  Sum_probs=90.3

Q ss_pred             ccchHHHHHHH----cCCCeEEEEeechhHHHHHHHHHHHHHhc-----CCcEEEee--ccchhc--------------c
Q 006659          306 LGGLKDHLKTI----RRSRRIVFIGCGTSYNAALAARPILEELS-----DLPVTMEI--ASDLVD--------------R  360 (636)
Q Consensus       306 ~~~l~~~~~~l----~~~~~I~i~G~G~S~~aa~~~~~~~~~~~-----~~~~~~~~--~~e~~~--------------~  360 (636)
                      .++++++++.+    .++++|+++|+|+|+.+|..+.+.|.+..     ++++....  +.++..              .
T Consensus        16 ~~~i~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (177)
T cd05006          16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQV   95 (177)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHH
Confidence            34455555554    55899999999999999999888775322     45555444  221100              1


Q ss_pred             cCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659          361 QAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG  420 (636)
Q Consensus       361 ~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~  420 (636)
                      ...++++|++|++|+||+|++++++++.||++|+++|+||++.+|||+++||++|.++..
T Consensus        96 ~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~  155 (177)
T cd05006          96 EALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSD  155 (177)
T ss_pred             HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCC
Confidence            124689999999999999999999999999999999999999999999999999998763

Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=99.60  E-value=1.1e-14  Score=170.02  Aligned_cols=220  Identities=15%  Similarity=0.222  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHHHHhhhhhccccccccce
Q 006659           19 ILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHA   98 (636)
Q Consensus        19 ~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~   98 (636)
                      ....++..-..++++-.+..+.++.+-.              .+.-|||+.+.+.++. .+|.++.      +..+.+.+
T Consensus       156 fer~Ly~~R~~~e~~~~~~~~~Yi~SlS--------------~rtiVYKGml~~~ql~-~fY~DL~------d~~~~s~~  214 (1485)
T PRK11750        156 FERRLFIARRRIEKRLADDKDFYVCSLS--------------NLVIIYKGLMMPADLP-RFYLDLA------DLRLESAI  214 (1485)
T ss_pred             HHHHHHHHHHHHHHhhccCCCEEEEecC--------------CCcceeEecccHHHHH-HhhhhhC------CcceeEEE
Confidence            3445555555555543223444444432              3789999999999887 8888764      24678999


Q ss_pred             EEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCcc----------------ccCCHhhHHH
Q 006659           99 GIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTF----------------ESETDTEVIP  162 (636)
Q Consensus        99 ~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~----------------~~~tDsE~i~  162 (636)
                      ++.|.|++||..++|..+|||.       .++|||+|....-.++.+..+++.+                .+.|||+.+-
T Consensus       215 al~HsRFSTNT~PsW~~AqPFR-------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~lD  287 (1485)
T PRK11750        215 CVFHQRFSTNTLPRWPLAQPFR-------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSLD  287 (1485)
T ss_pred             EEEECcCCCCCCCCCCcCCCce-------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHHH
Confidence            9999999999999999999996       4799999999888777766554321                3578999999


Q ss_pred             HHHHHHHhhccccCCCCCCCHHHHH------------------HHH-------HHHhhhhhheeEEecCCCCeEEEEEcC
Q 006659          163 KLAKFVFDKANEEEGDQPVTFSQVV------------------VEV-------MRHLEGAYALIFKSQHYPNELIACKRG  217 (636)
Q Consensus       163 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-------~~~l~G~~a~~~~d~~~~~~l~~~Rd~  217 (636)
                      +.++... ..|       .++.+|+                  +++       ++-++|+|++++.|   ++.+++.||+
T Consensus       288 n~lElL~-~~G-------~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~---g~~i~A~~Dr  356 (1485)
T PRK11750        288 NMLELLL-AGG-------MDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTD---GRYAACNLDR  356 (1485)
T ss_pred             HHHHHHH-HcC-------CCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEe---CCEEEEecCC
Confidence            9998665 333       2333332                  222       23368999999999   6899999999


Q ss_pred             ---CceEEEecc-----Ccccccccce--------eeccCCCeeeCCCcccceeeeeccchhhhhcCChHHHHHHH
Q 006659          218 ---SPLLLGVKD-----GAVSILKFDN--------AKGRNGGTYARPASVQRALSILEMEVEQINKGNYEHYMQKE  277 (636)
Q Consensus       218 ---~pL~~G~~~-----~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~y~~~m~ke  277 (636)
                         |||++|+..     .++|++.++.        +.|.||++..-|...-+-+.--++.......-+|..|..+.
T Consensus       357 nGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id~~~g~i~~~~eik~~~a~~~py~~wl~~~  432 (1485)
T PRK11750        357 NGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVIDTRTGRILHSAEIDNDLKSRHPYKEWLEKN  432 (1485)
T ss_pred             CCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEeCCCCeEeccHHHHHHHHhcCCHHHHHHhh
Confidence               999999865     4556666652        27899999332211111112223333344455677666543

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=99.59  E-value=2.7e-14  Score=162.59  Aligned_cols=148  Identities=20%  Similarity=0.255  Sum_probs=118.0

Q ss_pred             ccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch-hcccCCCCCCcEEEEEcCCCC
Q 006659          300 KAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL-VDRQAPIYREDTAVFVSQSGE  378 (636)
Q Consensus       300 ~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~  378 (636)
                      +.+.++.++++++++.|.++++|+++|+|+|+.+|.++++.+.++ ++.+........ ......++++|++|+||+||+
T Consensus       449 t~~~id~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~l-g~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~  527 (638)
T PRK14101        449 LREHLNFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRF-GIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGR  527 (638)
T ss_pred             HHHhcCHHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcC-CceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCC
Confidence            446788899999999999999999999999999999999988885 566554433322 222345789999999999999


Q ss_pred             CHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc-ccccchhhHHHHHHHHHHHHHHHhcCC
Q 006659          379 TADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE-IGVASTKAYTSQIVVMAMLALAIGGDT  449 (636)
Q Consensus       379 t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e-~~~~~t~s~~~~~~~l~lL~~~~~~~~  449 (636)
                      |++++++++.||++|+++|+||+. .|||+++||++|.+..... .+.....+..++++++.+|...+...+
T Consensus       528 t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~~~~~~~~~s~~~~~s~~~~l~lid~L~~~l~~~~  598 (638)
T PRK14101        528 APELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALETDHIEMRESQLSMISRILHLVMIDILAVGVAIRR  598 (638)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEEcCCccchhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999995 8999999999998755221 123344555667777777777776655

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.59  E-value=1.8e-14  Score=146.93  Aligned_cols=131  Identities=18%  Similarity=0.204  Sum_probs=107.4

Q ss_pred             CeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEE
Q 006659          320 RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVG  398 (636)
Q Consensus       320 ~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~  398 (636)
                      .+|+++|+|+|+.+|.+++..|.++ +..+......+... ....++++|++|++|+||+|++++++++.||++|+++|+
T Consensus         1 ~rI~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~   79 (268)
T TIGR00393         1 GKLVIVGIGKSGLIGKKIVATFAST-GTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIA   79 (268)
T ss_pred             CcEEEEecChHHHHHHHHHHHHHhc-CCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEE
Confidence            4799999999999999999998884 66666655555433 234578999999999999999999999999999999999


Q ss_pred             EEcCCCCccccccCeeEEcCCCCc---ccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          399 ITNTVGSAIARKTHCGVHINAGAE---IGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       399 IT~~~~s~La~~ad~~l~~~~~~e---~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      ||++.+|+|+++||+.|.++.+.+   .....+.++.+++.++.+|+..+...++.
T Consensus        80 iT~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~  135 (268)
T TIGR00393        80 FTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRARNF  135 (268)
T ss_pred             EECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            999999999999999999977554   23445677778888877788777755543

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR00274 N-acetylmuramic acid 6-phosphate etherase

Probab=99.58  E-value=2e-14  Score=146.25  Aligned_cols=145  Identities=26%  Similarity=0.291  Sum_probs=111.3

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHH-HHHHHHHHHHhcCCcEE---------------Eeec---cch---hcccCCC
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNA-ALAARPILEELSDLPVT---------------MEIA---SDL---VDRQAPI  364 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~a-a~~~~~~~~~~~~~~~~---------------~~~~---~e~---~~~~~~~  364 (636)
                      +.++.+++.+++.++|+++|+|+|... +..+..++.+++--+..               ....   .+.   ......+
T Consensus        45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l  124 (291)
T TIGR00274        45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL  124 (291)
T ss_pred             HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence            345666778889999999999999875 45666666555321110               0000   011   1122357


Q ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch--hhHHHHHHHHHHHH
Q 006659          365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST--KAYTSQIVVMAMLA  442 (636)
Q Consensus       365 ~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL~  442 (636)
                      +++|++|+||+||+|++++++++.||++|+++|+||++++|++++++|+.|.+..++|.....+  ++.+++.+++++|.
T Consensus       125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~  204 (291)
T TIGR00274       125 TKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLS  204 (291)
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999987777654343  78999999999999


Q ss_pred             HHHhcCCCC
Q 006659          443 LAIGGDTIS  451 (636)
Q Consensus       443 ~~~~~~~~~  451 (636)
                      ..+....++
T Consensus       205 t~~~~~~gk  213 (291)
T TIGR00274       205 TASMIKLGK  213 (291)
T ss_pred             HHHHHhcch
Confidence            888766553

This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.

>TIGR00441 gmhA phosphoheptose isomerase

Probab=99.58  E-value=1.9e-14  Score=133.52  Aligned_cols=110  Identities=17%  Similarity=0.139  Sum_probs=87.9

Q ss_pred             HHHHHHHcCCCeEEEEeechhHHHHHHHH------HHHHHhcCCcEEEee-cc--------chh----c---ccCCCCCC
Q 006659          310 KDHLKTIRRSRRIVFIGCGTSYNAALAAR------PILEELSDLPVTMEI-AS--------DLV----D---RQAPIYRE  367 (636)
Q Consensus       310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~------~~~~~~~~~~~~~~~-~~--------e~~----~---~~~~~~~~  367 (636)
                      +.+++.+.++++|+++|+|+|+..|..+.      +.+.+. ++++.... ..        +..    +   .....+++
T Consensus         2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   80 (154)
T TIGR00441         2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRP-GLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKG   80 (154)
T ss_pred             hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCC-CceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCC
Confidence            46788899999999999999999888874      333332 55555543 11        110    0   01235789


Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659          368 DTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG  420 (636)
Q Consensus       368 dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~  420 (636)
                      |++|++|+||+|++++++++.||++|+++|+||++++|||+++||++|.++..
T Consensus        81 D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~~  133 (154)
T TIGR00441        81 DVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPHF  133 (154)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999988764

Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type

Probab=99.57  E-value=9.8e-15  Score=139.39  Aligned_cols=100  Identities=17%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             cceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhcccc
Q 006659           96 IHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEE  175 (636)
Q Consensus        96 ~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~  175 (636)
                      +...++|.     +.   ...|+...   +++++++||+|||+.+|+++|...|+.+.+.+|+|++++++.    +||  
T Consensus        32 ~~~~~~~~-----~~---~~~~~~~~---~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~----~~G--   94 (199)
T cd01909          32 GAGTIVHA-----GS---VDVQVARS---ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLT----RLG--   94 (199)
T ss_pred             ceEEEeec-----CC---CceeEeeC---CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHH----HHh--
Confidence            55677762     11   23455543   489999999999999999999988999999999999999998    676  


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          176 EGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                                  .+++++|+|+|||++||..  ++|+++||+   +|||+....
T Consensus        95 ------------~~~l~~L~G~FAfai~D~~--~~L~laRDr~GikPLYy~~~~  134 (199)
T cd01909          95 ------------LHAFRLAEGDFCFFIEDGN--GRLTLATDHAGSVPVYLVQAG  134 (199)
T ss_pred             ------------HHHHHHcCEEEEEEEEcCC--CEEEEEECCCCCcCeEEEECC
Confidence                        7899999999999999964  899999999   777776544

Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (

>PRK00414 gmhA phosphoheptose isomerase; Reviewed

Probab=99.55  E-value=6.7e-14  Score=134.45  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=86.8

Q ss_pred             cchHHHHHHHcCC----CeEEEEeechhHHHHHHHHHHHH---Hh--cCCcEEEeeccchh---------------cccC
Q 006659          307 GGLKDHLKTIRRS----RRIVFIGCGTSYNAALAARPILE---EL--SDLPVTMEIASDLV---------------DRQA  362 (636)
Q Consensus       307 ~~l~~~~~~l~~~----~~I~i~G~G~S~~aa~~~~~~~~---~~--~~~~~~~~~~~e~~---------------~~~~  362 (636)
                      +.++++++.|.++    ++|+++|+|+|+..|..++..+.   ++  .++++.........               ....
T Consensus        28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~  107 (192)
T PRK00414         28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEA  107 (192)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEecCcHHHHhhhhccCCHHHHHHHHHHH
Confidence            4556666665554    99999999999998887764332   11  24554443221110               1123


Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659          363 PIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINA  419 (636)
Q Consensus       363 ~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~  419 (636)
                      ..+++|++|++|+||+|++++++++.||++|+++|+||++.+|||+++||++|.++.
T Consensus       108 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~  164 (192)
T PRK00414        108 VGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH  164 (192)
T ss_pred             hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence            458999999999999999999999999999999999999999999999999999876

>PRK13937 phosphoheptose isomerase; Provisional

Probab=99.55  E-value=4.5e-14  Score=135.52  Aligned_cols=114  Identities=22%  Similarity=0.261  Sum_probs=87.7

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHH-HHHHHHh----cCCcEEEee--cc-------ch----h---cccCCCC
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAA-RPILEEL----SDLPVTMEI--AS-------DL----V---DRQAPIY  365 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~-~~~~~~~----~~~~~~~~~--~~-------e~----~---~~~~~~~  365 (636)
                      +..+++++.+.++++|+++|+|+|+..|..+ ..+..++    .++++....  +.       +.    .   ......+
T Consensus        26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~  105 (188)
T PRK13937         26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR  105 (188)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence            3457788889999999999999999877554 2222122    145555432  10       11    0   1122468


Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659          366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG  420 (636)
Q Consensus       366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~  420 (636)
                      ++|++|++|+||+|++++++++.||++|+++|+||++++|||++.||++|.++..
T Consensus       106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~~  160 (188)
T PRK13937        106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPSD  160 (188)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCC
Confidence            9999999999999999999999999999999999999999999999999988764

>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions

Probab=99.53  E-value=9.6e-14  Score=123.15  Aligned_cols=111  Identities=28%  Similarity=0.322  Sum_probs=89.2

Q ss_pred             eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEE
Q 006659          321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGIT  400 (636)
Q Consensus       321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT  400 (636)
                      +|+++|+|+|+.+|.++++++.+..++++........   ....+++|++|++|+||+|++++++++.||++|+++|+||
T Consensus         1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT   77 (119)
T cd05017           1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTL---PAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT   77 (119)
T ss_pred             CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccC---cCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            5899999999999999999998866777776655332   2356899999999999999999999999999999999999


Q ss_pred             cCCCCccccccC----eeEEcCCCCcccccchhhHHHHHHHHHH
Q 006659          401 NTVGSAIARKTH----CGVHINAGAEIGVASTKAYTSQIVVMAM  440 (636)
Q Consensus       401 ~~~~s~La~~ad----~~l~~~~~~e~~~~~t~s~~~~~~~l~l  440 (636)
                      +  ++++++++|    ..+.++.+..    ...||++++..+..
T Consensus        78 ~--~~~l~~~~~~~~~~~~~~p~~~~----~r~s~~~~~~~~~~  115 (119)
T cd05017          78 S--GGKLLEMAREHGVPVIIIPKGLQ----PRAAFPYLFTALLN  115 (119)
T ss_pred             C--CchHHHHHHHcCCcEEECCCCCC----CceeHHHHHHHHHH
Confidence            7  457999999    6677765432    34677766654433

These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.

>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=99.52  E-value=1.8e-13  Score=139.88  Aligned_cols=166  Identities=23%  Similarity=0.297  Sum_probs=119.4

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHH-HHHHHHHHHhcCCcE--
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAA-LAARPILEELSDLPV--  349 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa-~~~~~~~~~~~~~~~--  349 (636)
                      .|.+|..+.++++.+....            + .+.++.+++.+++.++|+++|+|+|...| ..+..+...+.-.+-  
T Consensus        25 ~~~~~d~~~~~av~~~~~~------------I-~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~   91 (296)
T PRK12570         25 LINQEDKKVPLAVEKVLPQ------------I-AQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMV   91 (296)
T ss_pred             HHHHHHHHHHHHHHHhHHH------------H-HHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccc
Confidence            4556655555555544322            1 23456777889999999999999998764 444454444321110  


Q ss_pred             --EE-----------e---eccch-h--cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc
Q 006659          350 --TM-----------E---IASDL-V--DRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK  410 (636)
Q Consensus       350 --~~-----------~---~~~e~-~--~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~  410 (636)
                        ..           .   +..++ .  .....++++|++|++|+||+|++++++++.|+++|+++|+||++++++|+++
T Consensus        92 ~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~  171 (296)
T PRK12570         92 IGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKI  171 (296)
T ss_pred             eeeeecCchHhhhcccccCCcHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHh
Confidence              00           0   00000 0  1223467999999999999999999999999999999999999999999999


Q ss_pred             cCeeEEcCCCCcccccch--hhHHHHHHHHHHHHHHHhcCCCC
Q 006659          411 THCGVHINAGAEIGVAST--KAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       411 ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      +|+.|.+..++|....++  ++.+++.+++++|...+....+.
T Consensus       172 aD~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~Gk  214 (296)
T PRK12570        172 ADIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRLGK  214 (296)
T ss_pred             CCEEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence            999998877777654444  78899999999998888766543

>PRK02947 hypothetical protein; Provisional

Probab=99.51  E-value=1.2e-13  Score=138.07  Aligned_cols=111  Identities=21%  Similarity=0.146  Sum_probs=83.8

Q ss_pred             hHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCC-----cEE--------------EeeccchhcccCCCCCCcE
Q 006659          309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDL-----PVT--------------MEIASDLVDRQAPIYREDT  369 (636)
Q Consensus       309 l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~-----~~~--------------~~~~~e~~~~~~~~~~~dl  369 (636)
                      .+.+++.|.++++|+++|.|.|...|..+.+.+.++...     +..              .............++++|+
T Consensus        30 a~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv  109 (246)
T PRK02947         30 ADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIRPGDV  109 (246)
T ss_pred             HHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCCCCCE
Confidence            345556678899999999999998888776655322111     110              0000111122346789999


Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCC-----------CccccccCeeEEcCC
Q 006659          370 AVFVSQSGETADTLQALEYASENGALCVGITNTVG-----------SAIARKTHCGVHINA  419 (636)
Q Consensus       370 vI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~-----------s~La~~ad~~l~~~~  419 (636)
                      +|+||+||+|.+++++++.|+++|+++|+||++..           ++|++.||++|.+..
T Consensus       110 ~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~~~  170 (246)
T PRK02947        110 LIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDNGA  170 (246)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEcCC
Confidence            99999999999999999999999999999999984           799999999998765

>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=99.51  E-value=2.2e-13  Score=126.60  Aligned_cols=136  Identities=15%  Similarity=0.193  Sum_probs=116.0

Q ss_pred             chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCCHH-HHHH
Q 006659          308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGETAD-TLQA  385 (636)
Q Consensus       308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e-~i~a  385 (636)
                      .++++++.+.++++|+++|+|.|+..|..++.++.+..++++......++.+.+. .+++++++|++|++|+|.+ ++++
T Consensus         2 ~~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~   81 (153)
T cd05009           2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL   81 (153)
T ss_pred             hHHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHH
Confidence            3578888999999999999999999999999999998779999999999977654 4789999999999999776 8999


Q ss_pred             HHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659          386 LEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       386 l~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      ++.++++|+++++||++.+|  ++.+|+.+.++...+.     -+....+..+++|+..++..++
T Consensus        82 ~~~~~~~~~~vi~it~~~~s--~~~~d~~i~~~~~~~~-----~~~~~~~~~~q~la~~~a~~~g  139 (153)
T cd05009          82 IKEVKARGAKVIVITDDGDA--KDLADVVIRVPATVEE-----LSPLLYIVPLQLLAYHLAVARG  139 (153)
T ss_pred             HHHHHHcCCEEEEEecCCcc--cccCCeEEECCCCchh-----HHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999888  8999999988764432     3455567777888888776544

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>PRK13938 phosphoheptose isomerase; Provisional

Probab=99.50  E-value=2.2e-13  Score=130.53  Aligned_cols=111  Identities=22%  Similarity=0.205  Sum_probs=87.3

Q ss_pred             HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH-Hhc----CCcEEEeeccchh----------------cccCCCCCCc
Q 006659          310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILE-ELS----DLPVTMEIASDLV----------------DRQAPIYRED  368 (636)
Q Consensus       310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~-~~~----~~~~~~~~~~e~~----------------~~~~~~~~~d  368 (636)
                      +.+++.+++.++|+++|.|+|+..|..+...|. ++.    .++.......+..                ......+++|
T Consensus        36 ~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~~~~~~~D  115 (196)
T PRK13938         36 DRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALEGSARPGD  115 (196)
T ss_pred             HHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHHHhcCCCCC
Confidence            445556889999999999999888877776554 110    2334333322211                1134578999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659          369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG  420 (636)
Q Consensus       369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~  420 (636)
                      ++|++|+||+|++++++++.||++|+++|+||++++|||+++||+.|.++..
T Consensus       116 llI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~  167 (196)
T PRK13938        116 TLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSR  167 (196)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCC
Confidence            9999999999999999999999999999999999999999999999988763

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

Probab=99.49  E-value=9.6e-14  Score=132.98  Aligned_cols=128  Identities=14%  Similarity=0.233  Sum_probs=93.2

Q ss_pred             CCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhh
Q 006659          117 HPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEG  196 (636)
Q Consensus       117 qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  196 (636)
                      ||-.....+.+++++||+|||+.+|+++|.   . .++.+|+|+|+++|+..-+ .|.         . ...+++++|+|
T Consensus        63 ~~rl~~~~~~~~~vfnGeIyN~~eLr~~lg---~-~~t~sD~evIl~lY~~~~d-~G~---------y-~~~~~l~~L~G  127 (224)
T cd01910          63 HPRLFAVKDDIFCLFQGHLDNLGSLKQQYG---L-SKTANEAMLVIEAYRTLRD-RGP---------Y-PADQVVKDLEG  127 (224)
T ss_pred             cCcEECCCCCEEEEEEeEEcCHHHHHHHhC---C-CCCCcHHHHHHHHHHHHHh-cCC---------c-cHHHHHHhcCe
Confidence            554444467899999999999999999983   2 3678999999999974211 120         0 01469999999


Q ss_pred             hhheeEEecCCCCeEEEEEcC---CceEEEecc------Ccccccccc-----eeeccCCCeeeCCCcccceeeeecc
Q 006659          197 AYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSILKFD-----NAKGRNGGTYARPASVQRALSILEM  260 (636)
Q Consensus       197 ~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~i~~~~~  260 (636)
                      +|||++||.. .+++++|||+   +|||+|..+      +|+-.++-+     ....+||++...+|...+...|.++
T Consensus       128 ~FAFvi~D~~-~~~l~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~  204 (224)
T cd01910         128 SFAFVLYDKK-TSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNK  204 (224)
T ss_pred             EEEEEEEECC-CCEEEEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCch
Confidence            9999999987 7999999999   999999763      333333332     3378899995555656666666554

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>PRK10886 DnaA initiator-associating protein DiaA; Provisional

Probab=99.45  E-value=1.2e-12  Score=125.41  Aligned_cols=112  Identities=19%  Similarity=0.218  Sum_probs=88.0

Q ss_pred             HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH-Hh----cCCcEEEeeccc-hhc---------------ccCCCCCCc
Q 006659          310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILE-EL----SDLPVTMEIASD-LVD---------------RQAPIYRED  368 (636)
Q Consensus       310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~-~~----~~~~~~~~~~~e-~~~---------------~~~~~~~~d  368 (636)
                      +.+++.+.++++|+++|.|+|...|..++..|. ++    .++++....... ...               .....+++|
T Consensus        32 ~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~~gD  111 (196)
T PRK10886         32 MTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGD  111 (196)
T ss_pred             HHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCCCCC
Confidence            445556688999999999999998888877663 22    255655432111 110               113368999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcCCCC
Q 006659          369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK---THCGVHINAGA  421 (636)
Q Consensus       369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~---ad~~l~~~~~~  421 (636)
                      ++|++|.||+|++++++++.||++|+++|+||+..++||+++   +|..|.+|...
T Consensus       112 vli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~  167 (196)
T PRK10886        112 VLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHR  167 (196)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCc
Confidence            999999999999999999999999999999999999999997   79999998743

>PRK13936 phosphoheptose isomerase; Provisional

Probab=99.43  E-value=1.4e-12  Score=126.07  Aligned_cols=115  Identities=22%  Similarity=0.226  Sum_probs=88.4

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH-Hhc----CCcEEEee---------ccchhc-------ccCCCC
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILE-ELS----DLPVTMEI---------ASDLVD-------RQAPIY  365 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~-~~~----~~~~~~~~---------~~e~~~-------~~~~~~  365 (636)
                      +.++.+++.+.++++|+++|.|.|...|..++..|. +++    ++++....         ..+..+       .....+
T Consensus        31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~  110 (197)
T PRK13936         31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ  110 (197)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence            445677788999999999999999988877766554 221    33332210         011100       023357


Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcCCCC
Q 006659          366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK---THCGVHINAGA  421 (636)
Q Consensus       366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~---ad~~l~~~~~~  421 (636)
                      ++|++|+||+||+|++++++++.||++|+++|+||++.+|+|+++   ||+.|.++..+
T Consensus       111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~  169 (197)
T PRK13936        111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER  169 (197)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence            999999999999999999999999999999999999999999995   99999987744

>COG0121 Predicted glutamine amidotransferase [General function prediction only]

Probab=99.39  E-value=1.7e-12  Score=128.13  Aligned_cols=130  Identities=23%  Similarity=0.242  Sum_probs=91.5

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccc------cCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchh
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEY------RGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIES   74 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~------RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~   74 (636)
                      ||-++|+....     +   ..+........+      ..+|||||+.+...               ++..||+.-++- 
T Consensus         1 MCrlLg~~g~~-----p---~~~~~s~~~~~~~~~~~~~h~DGwGia~y~~~---------------~~~~yk~~~P~~-   56 (252)
T COG0121           1 MCRLLGMHGNP-----P---TDSLFSQSGDPRRAGGTGQHGDGWGIAFYEGR---------------GPRLYKSPLPAW-   56 (252)
T ss_pred             CceeeeecCCC-----c---chhhhhhccchhhccCCCCCCCcceEEEEcCC---------------ccEEEeCCCccc-
Confidence            99999998533     1   122222222222      33899999999876               899999866432 


Q ss_pred             hhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccc
Q 006659           75 LVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFE  153 (636)
Q Consensus        75 l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~  153 (636)
                            ++.  ....+...+++.++|+|+|.||.|..+..|+|||..+ ++..|.|+|||.|.++..+..    .++...
T Consensus        57 ------~d~--~~~~~~~~i~S~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~~~----~~~~~~  124 (252)
T COG0121          57 ------EDI--ALLVLAYPIKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEG----RKLEPV  124 (252)
T ss_pred             ------cch--hhhhcccccCccEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccccc----cccCCC
Confidence                  221  1122234567889999999999998899999999998 677889999999999876322    233445


Q ss_pred             cCCHhhHHHHHHH
Q 006659          154 SETDTEVIPKLAK  166 (636)
Q Consensus       154 ~~tDsE~i~~l~~  166 (636)
                      ..+|+|.....+.
T Consensus       125 ~~tds~~~~~~~~  137 (252)
T COG0121         125 GYTDSEAAFCGIT  137 (252)
T ss_pred             CcchHHHHHHHhh
Confidence            6788888776553

>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]

Probab=99.34  E-value=2e-11  Score=109.47  Aligned_cols=112  Identities=21%  Similarity=0.249  Sum_probs=87.7

Q ss_pred             HHHHHHHcCCCeEEEEeechhHHHHHH-HHHHHHHhc----CCcEEEee---------ccchhc-------ccCCCCCCc
Q 006659          310 KDHLKTIRRSRRIVFIGCGTSYNAALA-ARPILEELS----DLPVTMEI---------ASDLVD-------RQAPIYRED  368 (636)
Q Consensus       310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~-~~~~~~~~~----~~~~~~~~---------~~e~~~-------~~~~~~~~d  368 (636)
                      ..+++.+++.++|+++|.|+|+.-|+- ++.+..|+.    .+|.....         +.|+.+       ....-.++|
T Consensus        32 ~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GD  111 (176)
T COG0279          32 QLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGD  111 (176)
T ss_pred             HHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCCCC
Confidence            455667889999999999999876643 455555553    35555433         122211       123456999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659          369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA  421 (636)
Q Consensus       369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~  421 (636)
                      ++|+||.||+++.++.+++.||++|++||++|+..+..++.++|+.|.+|...
T Consensus       112 vLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~  164 (176)
T COG0279         112 VLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTD  164 (176)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCc
Confidence            99999999999999999999999999999999999999999999999998753

>COG2103 Predicted sugar phosphate isomerase [General function prediction only]

Probab=99.33  E-value=7.5e-12  Score=119.98  Aligned_cols=143  Identities=28%  Similarity=0.364  Sum_probs=109.4

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHH-HHHHHHHhcCCc----EEE---------------eeccch---hcccCC
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALA-ARPILEELSDLP----VTM---------------EIASDL---VDRQAP  363 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~-~~~~~~~~~~~~----~~~---------------~~~~e~---~~~~~~  363 (636)
                      ..++.+++.+++..|++.+|.|+|.-.+.. +..+--.+ +++    +-.               ++..+.   ......
T Consensus        48 ~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTf-gv~~e~ViglIAGG~~A~~~avEGaED~~~~g~~dl~~~~  126 (298)
T COG2103          48 AAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTF-GVPPELVIGLIAGGEEAILKAVEGAEDDEELGEADLKNIG  126 (298)
T ss_pred             HHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCc-CCChhHeeeeecCCHHHHHHhhcCccccHHHHHHHHHHcC
Confidence            346777888999999999999999765532 22211111 111    001               111111   122445


Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccch--hhHHHHHHHHHHH
Q 006659          364 IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST--KAYTSQIVVMAML  441 (636)
Q Consensus       364 ~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t--~s~~~~~~~l~lL  441 (636)
                      ++++|+||+|+.||+|+.++.+++.||+.|+.+|+|++|++|++.+.+|+.|..-.|||....+|  |+-|+|-++|++|
T Consensus       127 lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~Ad~~I~~~vGPEvltGSTRlKaGTAQKlvLNMl  206 (298)
T COG2103         127 LTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTGSTRLKAGTAQKLVLNML  206 (298)
T ss_pred             CCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhcCcceeeccCccccccccccccchHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999876666  8899999999999


Q ss_pred             HHHHhcCCC
Q 006659          442 ALAIGGDTI  450 (636)
Q Consensus       442 ~~~~~~~~~  450 (636)
                      ....+-..+
T Consensus       207 ST~~Mi~lG  215 (298)
T COG2103         207 STGVMIKLG  215 (298)
T ss_pred             HHHHHHHhc
Confidence            887765444

>cd04795 SIS SIS domain

Probab=99.22  E-value=5.5e-11  Score=99.06  Aligned_cols=79  Identities=34%  Similarity=0.361  Sum_probs=71.1

Q ss_pred             EEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhccc--CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEE
Q 006659          322 IVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQ--APIYREDTAVFVSQSGETADTLQALEYASENGALCVGI  399 (636)
Q Consensus       322 I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~I  399 (636)
                      |+++|+|+|+.+|.++++.+.++.+.++....+.++.+..  ...+++|++|++|+||+|++++++++.+|++|+++|+|
T Consensus         1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i   80 (87)
T cd04795           1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI   80 (87)
T ss_pred             CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence            6899999999999999999999767888877777765443  56789999999999999999999999999999999999


Q ss_pred             E
Q 006659          400 T  400 (636)
Q Consensus       400 T  400 (636)
                      |
T Consensus        81 t   81 (87)
T cd04795          81 T   81 (87)
T ss_pred             e
Confidence            9

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains

Probab=99.19  E-value=2.5e-10  Score=106.34  Aligned_cols=105  Identities=24%  Similarity=0.264  Sum_probs=83.3

Q ss_pred             cchHHHHHHHc---CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEeeccchh---cccCCC-CCCcEEEEEcCCC
Q 006659          307 GGLKDHLKTIR---RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEIASDLV---DRQAPI-YREDTAVFVSQSG  377 (636)
Q Consensus       307 ~~l~~~~~~l~---~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~~~e~~---~~~~~~-~~~dlvI~iS~SG  377 (636)
                      +.++++++.+.   .+++|+++|+|+|+..+..+.+++.+..  +.++.+.+..|..   .....+ .++|++|++|.||
T Consensus         5 ~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG   84 (158)
T cd05015           5 ERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSG   84 (158)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCc
Confidence            44566777774   4899999999999998888888888775  4565565554431   122334 4899999999999


Q ss_pred             CCHHHHHHHHHHHH---------cCCeEEEEEcCCCCccccccC
Q 006659          378 ETADTLQALEYASE---------NGALCVGITNTVGSAIARKTH  412 (636)
Q Consensus       378 ~t~e~i~al~~ak~---------~g~~vi~IT~~~~s~La~~ad  412 (636)
                      +|.|++.+++.+++         .+.++|+||+ +++++.+.++
T Consensus        85 ~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~-~~s~l~~~a~  127 (158)
T cd05015          85 TTLETLANARLAREWLEEAGGDDLAKHFVAITD-NGSGLLKKAG  127 (158)
T ss_pred             CCHHHHHHHHHHHHHHHHhccccccceEEEEcC-CChHHHHHcC
Confidence            99999999999999         8999999999 6888887665

This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.

>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated

Probab=99.11  E-value=1.7e-08  Score=116.44  Aligned_cols=286  Identities=14%  Similarity=0.127  Sum_probs=147.8

Q ss_pred             cchHHHHHHHcC--CCeEEEEeechhHHHHHHHHHHHHHhcCCcEE-Eeeccc---hhcccCCC-CCCcEEEEEcCCCCC
Q 006659          307 GGLKDHLKTIRR--SRRIVFIGCGTSYNAALAARPILEELSDLPVT-MEIASD---LVDRQAPI-YREDTAVFVSQSGET  379 (636)
Q Consensus       307 ~~l~~~~~~l~~--~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~-~~~~~e---~~~~~~~~-~~~dlvI~iS~SG~t  379 (636)
                      +.++++++.+++  .++|+++|+|+|+..+..+.+.+.+..+.+.. +.+..+   +......+ .+++++|++|.||+|
T Consensus       441 ~~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT  520 (948)
T PRK09533        441 AEYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGT  520 (948)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCC
Confidence            455677777764  89999999999999888888877654444333 222222   11111112 268899999999999


Q ss_pred             HHHHHHHHHHH---------HcCCeEEEEEcCCCCccccccC-eeEE-cCCCCcccccchhhHHHHHHHHHHHHHHHhcC
Q 006659          380 ADTLQALEYAS---------ENGALCVGITNTVGSAIARKTH-CGVH-INAGAEIGVASTKAYTSQIVVMAMLALAIGGD  448 (636)
Q Consensus       380 ~e~i~al~~ak---------~~g~~vi~IT~~~~s~La~~ad-~~l~-~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~  448 (636)
                      .||+.+.+.++         +.+..+|+||+ ++|+|.+.|+ ..+. +...++ .+...-|..+.+-   ++...+...
T Consensus       521 ~ET~sa~~~~~~~l~~~~g~~~~~~~VaVTd-pgs~L~~~A~~~G~~~vf~~~p-~VGGRYSVLSavG---LvPaa~~Gi  595 (948)
T PRK09533        521 LEPNIFKDYFFARVKEVLGAKAGRHFVAVTD-PGSSLEKVAKEDGFRKIFHGDP-DIGGRYSVLSPFG---LVPAAAAGI  595 (948)
T ss_pred             HHHHHHHHHHHHHhhhhcccccCCeEEEEeC-CCChHHHHHHHcCCeeEecCCC-CCCcchHHhhhhh---hHHHHHhCc
Confidence            99999999776         34678999999 5899998874 2221 112221 1222222222221   222222211


Q ss_pred             CCCcHHHHHHHHHHHhhhHHHHHHHHh-chHHHHHHHHHh-----cCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccc
Q 006659          449 TISTQARREAIIDGLCDLPNKVREVLK-LDQEMKVLAKQL-----IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEG  522 (636)
Q Consensus       449 ~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~a~~l-----~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~  522 (636)
                         +   ++++++....+.+.+..-.. .++....++..+     .+...+.+...+.......-..+-++|..+..-.+
T Consensus       596 ---D---i~~lL~GA~~m~~~~~~~~~~~~Npa~~Laaal~~~~~~Gr~~V~i~Ys~~L~~f~~W~~QL~aES~GK~g~G  669 (948)
T PRK09533        596 ---D---VRALLDSALAMVRSCGPSVPPADNPGVQLGLALGVAATQGRDKVTIVASPAIADFGAWAEQLIAESTGKEGKG  669 (948)
T ss_pred             ---h---HHHHHHhHHHHHHHhccCCCcccCHHHHHHHHHHHHHhCCCcEEEEEChHHHHHHHHHHHHHHHhhcCCCCCC
Confidence               1   23344444333322211101 122233343322     34445655544443444444444567776554333


Q ss_pred             ccccccccccccccc--CCCCeEE-EEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch
Q 006659          523 ILAGEMKHGPLALVD--ENLPILV-IATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL  599 (636)
Q Consensus       523 ~~~~Ef~HGp~~~~~--~~~~vi~-l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~  599 (636)
                      . +++ .|-++-...  ....+++ +.-++....+.....+.+.+.|..++.|..++                   .   
T Consensus       670 l-~Pv-~~e~vg~~~~~g~d~~fi~l~~~~~~~~~~~at~~AL~~~g~P~~~I~l~~-------------------~---  725 (948)
T PRK09533        670 L-IPI-DGEPLGDPAVYGNDRVFVYLRLAGEADAAQDAALAALEAAGHPVVRIVLDS-------------------A---  725 (948)
T ss_pred             c-cCC-cceeecccCCCCCCcEEEEEeccccchHHHHHHHHHHHhcCCCeEEEEeCC-------------------h---
Confidence            2 333 332111111  1122222 22223333344444455556666665554431                   1   


Q ss_pred             hhHHHHH-HHHHHHHHHHHHcCCCCCCCC
Q 006659          600 QPVINIV-PLQLLAYHLTVLRGYNVDQPR  627 (636)
Q Consensus       600 ~~~~~~v-~~q~la~~lA~~~G~~pd~pr  627 (636)
                      ..+-.++ .+++.+++.+...|+||-.-.
T Consensus       726 ~~LG~lf~l~E~atav~G~LlGINPFDQP  754 (948)
T PRK09533        726 EQLGQEFFRWEMATAVAGAVLGINPFDQP  754 (948)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCch
Confidence            1233333 346899999999999996543

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]

Probab=99.04  E-value=9.1e-10  Score=112.98  Aligned_cols=84  Identities=17%  Similarity=0.353  Sum_probs=65.3

Q ss_pred             CCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhh
Q 006659          116 SHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLE  195 (636)
Q Consensus       116 ~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  195 (636)
                      .||++..  .+++|.+||+|||.           -+..+..|+..++..+...- +.        .+    +.+.++.++
T Consensus        62 ~Qpvv~d--~~~vfl~NGeIyn~-----------~~s~~~~d~~~l~~~l~~~~-e~--------~~----Il~~i~~~q  115 (520)
T KOG0573|consen   62 KQPVVED--DRYVFLFNGEIYNG-----------EKSDTLFDTDILAEELSNLK-ES--------GD----ILDIIKSLQ  115 (520)
T ss_pred             cCceecc--cceEEEecceeccC-----------CCccccchHHHHHHHHhcCC-cc--------cc----HHHHHHhcc
Confidence            5897754  45999999999994           34456679999988887322 11        23    445668999


Q ss_pred             hhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          196 GAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       196 G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                      |+|+|++++.. .++||+.||.   |+|.+++.|
T Consensus       116 Gp~~~iyY~~~-~~~LyfgRD~~GRrSLly~~~~  148 (520)
T KOG0573|consen  116 GPWAFIYYDVR-SDKLYFGRDDIGRRSLLYSLDP  148 (520)
T ss_pred             CCceEEEEEcc-CcEEEEecccccceeeeEEecc
Confidence            99999999998 7999999999   778888777

>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]

Probab=99.04  E-value=3.1e-09  Score=97.77  Aligned_cols=124  Identities=23%  Similarity=0.231  Sum_probs=87.9

Q ss_pred             hHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE-e--ec---------cch----------hcccCCCCC
Q 006659          309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM-E--IA---------SDL----------VDRQAPIYR  366 (636)
Q Consensus       309 l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~-~--~~---------~e~----------~~~~~~~~~  366 (636)
                      -+.+++.+.+-++|+++|||.|+.+|.   ..+.|.+|+.... .  .+         +.+          ......+++
T Consensus        28 a~lVAesi~n~g~i~~FG~GHShm~ae---Ev~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~  104 (243)
T COG4821          28 AKLVAESIMNDGRIYVFGSGHSHMLAE---EVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRP  104 (243)
T ss_pred             HHHHHHHHhcCCEEEEecCchHHHHHH---HHHhhcCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHhcCCC
Confidence            355667788999999999999996665   4455766643221 1  11         111          111234679


Q ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCC-----------ccccccCeeEEcCC----------CCcccc
Q 006659          367 EDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGS-----------AIARKTHCGVHINA----------GAEIGV  425 (636)
Q Consensus       367 ~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s-----------~La~~ad~~l~~~~----------~~e~~~  425 (636)
                      +|++|++|.||.++-.+++++++|++||++|++|+-.-|           .|-..+|++|.-.+          +.+..+
T Consensus       105 ~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ei~~  184 (243)
T COG4821         105 NDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGSEIKV  184 (243)
T ss_pred             CCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCCcccchheeecCccccc
Confidence            999999999999999999999999999999999997766           56778898876544          223445


Q ss_pred             cchhhHHHHH
Q 006659          426 ASTKAYTSQI  435 (636)
Q Consensus       426 ~~t~s~~~~~  435 (636)
                      ..|.+++.-.
T Consensus       185 ~ptSt~~g~~  194 (243)
T COG4821         185 GPTSTVSGVT  194 (243)
T ss_pred             cCcchhHHHH
Confidence            5565555433

>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways

Probab=99.00  E-value=2.1e-09  Score=99.37  Aligned_cols=134  Identities=15%  Similarity=0.161  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCC------CCeEEEEeCCc
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDEN------LPILVIATRDA  550 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~------~~vi~l~~~~~  550 (636)
                      .+.++++|.++.+. ..++.|.+...++|++++..|.|+++.||....++|+.|+.+..++..      ..++++..++ 
T Consensus         5 ~n~Ak~LA~~L~~~-~Pvi~~~~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d~~-   82 (155)
T PF10432_consen    5 VNPAKRLALELAGR-IPVIYGSPLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRDPE-   82 (155)
T ss_dssp             HHHHHHHHHHHTTS-EEEEEECGCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-TC-
T ss_pred             cCHHHHHHHHHcCC-CcEEEECccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEcCC-
Confidence            57789999999884 444555589999999999999999999999999999999999887654      2345554433 


Q ss_pred             chHHH---HHHHHH-HHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCCCCC
Q 006659          551 CFSKQ---QSVIQQ-LHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYNVDQ  625 (636)
Q Consensus       551 ~~~~~---~~~~~~-~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~pd~  625 (636)
                      ...+.   .+++++ +++++..++.|...+.                   ..+..+++++ .+++.|+|||+.+|+||..
T Consensus        83 ~~~~~~~r~~~~~e~~~~~~~~v~~v~~~g~-------------------s~l~rl~~li~l~d~aS~YLA~~~GvDP~~  143 (155)
T PF10432_consen   83 DHPRVQRRVEITREIAEDRGVRVIEVEAEGG-------------------SPLERLASLIYLGDYASVYLALLYGVDPTP  143 (155)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSSEEEEE--SCC-------------------CHHHHHHHHHHHHHHHHHHHHHHCT--SS-
T ss_pred             ccccchhhhHHHHHHHHhcCCcEEEEecCCC-------------------CHHHHHHHHHHHHHHHHHHHHHHhCcCCCc
Confidence            22222   334444 3667888888876553                   3556666666 5699999999999999998


Q ss_pred             CCCCcc
Q 006659          626 PRNLAK  631 (636)
Q Consensus       626 pr~l~k  631 (636)
                      -..+.+
T Consensus       144 v~~I~~  149 (155)
T PF10432_consen  144 VPIIDE  149 (155)
T ss_dssp             TCCCHH
T ss_pred             chHHHH
Confidence            877653

In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.

>PF01380 SIS: SIS domain SIS domain web page

Probab=98.99  E-value=1.7e-09  Score=97.45  Aligned_cols=127  Identities=19%  Similarity=0.287  Sum_probs=104.2

Q ss_pred             hcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcC
Q 006659          487 LIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARK  566 (636)
Q Consensus       487 l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g  566 (636)
                      +.+.++++++|.|.++++|.+++++++++.+......+.+++.|+|...+++++++|+|..+|.+ ..+.+.++.++++|
T Consensus         2 i~~~~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~-~~~~~~~~~ak~~g   80 (131)
T PF01380_consen    2 IAKAKRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGET-RELIELLRFAKERG   80 (131)
T ss_dssp             HTTSSEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTT-HHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccc-hhhhhhhHHHHhcC
Confidence            56789999999999999999999999999999999999999999999999999999999976655 45566777899999


Q ss_pred             CeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHH
Q 006659          567 GRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLT  616 (636)
Q Consensus       567 ~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA  616 (636)
                      .++++|++.......  ...|..+.+|..++...+......+|++.+.+.
T Consensus        81 ~~vi~iT~~~~~~l~--~~ad~~l~~~~~~~~~~~~~~s~~~~~~~~~~l  128 (131)
T PF01380_consen   81 APVILITSNSESPLA--RLADIVLYIPTGEESQSASTSSFSAQLSLLDAL  128 (131)
T ss_dssp             SEEEEEESSTTSHHH--HHSSEEEEEESSCGSSSSHSHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCchh--hhCCEEEEecCCCccccchHHHHHHHHHHHHHH
Confidence            999999987765442  135778888865555555666667777666554

; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=98.97  E-value=2.4e-09  Score=97.44  Aligned_cols=92  Identities=25%  Similarity=0.270  Sum_probs=61.0

Q ss_pred             HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcC-----CcEEEeecc-------c------h---hcccCCCCCCc
Q 006659          310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSD-----LPVTMEIAS-------D------L---VDRQAPIYRED  368 (636)
Q Consensus       310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~-----~~~~~~~~~-------e------~---~~~~~~~~~~d  368 (636)
                      +.+++.+++-++|+++|+|+|...|..+..-+.....     .+.......       +      |   ........++|
T Consensus        26 ~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gD  105 (138)
T PF13580_consen   26 DLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIRPGD  105 (138)
T ss_dssp             HHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--TT-
T ss_pred             HHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCCCCC
Confidence            4566678899999999999998776665555544432     222322221       1      1   01122368999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEc
Q 006659          369 TAVFVSQSGETADTLQALEYASENGALCVGITN  401 (636)
Q Consensus       369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~  401 (636)
                      ++|++|.||+|+.++++++.||++|++||+||+
T Consensus       106 vli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg  138 (138)
T PF13580_consen  106 VLIVISNSGNSPNVIEAAEEAKERGMKVIALTG  138 (138)
T ss_dssp             EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            999999999999999999999999999999995

...

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=98.80  E-value=3.5e-08  Score=112.62  Aligned_cols=139  Identities=14%  Similarity=0.132  Sum_probs=112.5

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCC--CCcEEEEEcCCCC-CHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIY--REDTAVFVSQSGE-TADT  382 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~--~~dlvI~iS~SG~-t~e~  382 (636)
                      +.++++++.+.++++|+++|.|.++..|..++..|.+++.+++......|+.+.+. .++  +++.+|+++.+|. +..+
T Consensus       484 ~~~~~~a~~l~~a~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~~~~~~~VI~i~~~~~~~~~~  563 (640)
T PTZ00295        484 EQCKRIAEKLKNAKSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTPVILIILDDEHKELM  563 (640)
T ss_pred             HHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhcCCCCCeEEEEEcCCccHHHH
Confidence            45788899999999999999999999999999999998888888888888876543 345  7899999999988 7889


Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659          383 LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIST  452 (636)
Q Consensus       383 i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~  452 (636)
                      +++++.++++|+++|+||+.. +++...+|.++.++.. +.     -+....+..+++|+..++..++.+
T Consensus       564 ~~~~~~lk~rga~vi~It~~~-~~l~~~ad~~i~ip~~-~~-----l~p~~~~ip~Qllay~la~~~G~d  626 (640)
T PTZ00295        564 INAAEQVKARGAYIIVITDDE-DLVKDFADEIILIPSN-GP-----LTALLAVIPLQLLAYEIAILRGIN  626 (640)
T ss_pred             HHHHHHHHHcCCEEEEEecCC-ccccccCCeEEEeCCc-cc-----chHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999984 5688899988888753 21     122334556677788777666543

>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions

Probab=98.76  E-value=1.5e-07  Score=84.62  Aligned_cols=125  Identities=21%  Similarity=0.172  Sum_probs=89.7

Q ss_pred             HHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCC---CCeEEEEeCCcch--H
Q 006659          479 EMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDEN---LPILVIATRDACF--S  553 (636)
Q Consensus       479 ~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~---~~vi~l~~~~~~~--~  553 (636)
                      .++++|..+.+...+++ |++...++|+.++..|.|++|++|....++|..|+.+...+..   ...+++..++...  .
T Consensus         2 pAk~LA~~l~g~~Pvi~-g~~~~~~~A~R~k~ql~enAK~~A~~~~lPE~~hn~i~~~~~~~~~~~~~~~~~d~~~~~~~   80 (132)
T cd05637           2 PAKELALELAGRIPIIY-GSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRI   80 (132)
T ss_pred             HHHHHHHHhcCCCCEEE-eccchHHHHHHHHHHHHHHhCCCcccccCchhcccccccccCcccccceEEEecCcccccch
Confidence            46788888888655555 5558889999999999999999999999999999999877642   1233323222222  2


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCCC
Q 006659          554 KQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYNV  623 (636)
Q Consensus       554 ~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~p  623 (636)
                      +.+..+..+..+|..+.++...+.                   ..+..+++++ .+.+.++|||+.+|+||
T Consensus        81 ~~r~~~~~~~~~~~~~~~~~~~g~-------------------s~l~rl~~Li~~~d~aSvyLA~~~GvDP  132 (132)
T cd05637          81 KLRIVITKFEEGGIPYEVIESVGA-------------------SPLARLLSLIYLGDLASVYLALLRGVDP  132 (132)
T ss_pred             hHHHHHHHHHhcCCCeEEEecCCC-------------------CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            322233335667777777765442                   3566777666 46999999999999998

These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.

>PRK03868 glucose-6-phosphate isomerase; Provisional

Probab=98.56  E-value=3e-05  Score=83.04  Aligned_cols=94  Identities=19%  Similarity=0.188  Sum_probs=70.0

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEE-e--eccchhcccC-CCCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTM-E--IASDLVDRQA-PIYREDTAVFVSQSGETADTLQALEYASE  391 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~-~--~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e~i~al~~ak~  391 (636)
                      ..+.|+++|+|+|+..+..+.+.+....  ..++.+ .  ++.++..... ...+++++|++|.||+|.||+.+++.+++
T Consensus        57 ~~~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGtT~ETl~~~~~~~~  136 (410)
T PRK03868         57 SIKNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGTTIETISIFKYLLS  136 (410)
T ss_pred             CCCEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999988775433  344442 2  3444433333 23478999999999999999999999988


Q ss_pred             cC------Ce-EEEEEcCCCCccccccC
Q 006659          392 NG------AL-CVGITNTVGSAIARKTH  412 (636)
Q Consensus       392 ~g------~~-vi~IT~~~~s~La~~ad  412 (636)
                      ++      ++ +++||+ ++++|.+.|+
T Consensus       137 ~~~~~~~~~~~~v~vTd-~~s~L~~~a~  163 (410)
T PRK03868        137 HFKLDQELKKNFLFITD-PDSKLEQFAK  163 (410)
T ss_pred             HhccccccccEEEEEec-CCchHHHhHH
Confidence            73      44 445565 6889999887

>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.33  E-value=2.9e-05  Score=83.35  Aligned_cols=204  Identities=18%  Similarity=0.118  Sum_probs=128.6

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhcCC--cEEEe---eccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHHc
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELSDL--PVTME---IASDLVDRQAPIY-REDTAVFVSQSGETADTLQALEYASEN  392 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~~~--~~~~~---~~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~~  392 (636)
                      .+.|+.+|+|+|+..+.++...+.....-  .+...   ++.+.......++ +.++++++|.||+|.||+...+.+++.
T Consensus        79 ~~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~  158 (446)
T COG0166          79 ITDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKW  158 (446)
T ss_pred             cceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHH
Confidence            88999999999999999998888877542  22222   2222222223344 457999999999999999999999987


Q ss_pred             C-------CeEEEEEcCCCCccccccC----eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006659          393 G-------ALCVGITNTVGSAIARKTH----CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIID  461 (636)
Q Consensus       393 g-------~~vi~IT~~~~s~La~~ad----~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~  461 (636)
                      .       .+..++|+...+.+++.++    .++.++.+    +...-|..+.+.   ++.+.++...      +.++++
T Consensus       159 ~~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~----VGGRfS~~SaVG---~l~~a~~~~~------~~~lL~  225 (446)
T COG0166         159 LEKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDW----VGGRYSVLSAVG---LLPLALGGID------FKELLE  225 (446)
T ss_pred             HHhhhhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCC----CCCccchhHHHH---HHHHHHhccc------HHHHHH
Confidence            6       5677888888888886664    45666542    222333333333   3444444332      344555


Q ss_pred             HHhhhHHHHHHH-Hhc-hHHHHHHHHH----hcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccc--cccc
Q 006659          462 GLCDLPNKVREV-LKL-DQEMKVLAKQ----LIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMK--HGPL  533 (636)
Q Consensus       462 ~l~~l~~~~~~~-~~~-~~~~~~~a~~----l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~--HGp~  533 (636)
                      ....+.+.+... ++. .+....++..    +.+...-.++...+......+.-..+.+-+.-.+.....+++.  +|++
T Consensus       226 Ga~~~d~~~~~~~l~~N~~~l~ali~~~~~~~~G~~~~~i~~Y~~~l~~f~~~~qQL~~ES~GK~~~~~~~~~~~~t~~~  305 (446)
T COG0166         226 GAAAADEHFRTTPLEENLAVLYALIGIWYYNFKGAEIEVILPYDPYLEYFPAWLQQLNMESNGKSVKGIGPEVNFHTDPI  305 (446)
T ss_pred             HHHHHHHHhccCChhhcHHHHHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHHhccCCCccCcCCccccCCCce
Confidence            544444444431 222 2222333332    2456778888998888888887777777776566555555555  6777


Q ss_pred             cc
Q 006659          534 AL  535 (636)
Q Consensus       534 ~~  535 (636)
                      .+
T Consensus       306 ~~  307 (446)
T COG0166         306 SW  307 (446)
T ss_pred             ee
Confidence            65

>cd05013 SIS_RpiR RpiR-like protein

Probab=98.31  E-value=8.4e-06  Score=73.82  Aligned_cols=112  Identities=12%  Similarity=0.053  Sum_probs=90.4

Q ss_pred             HHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHH
Q 006659          480 MKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVI  559 (636)
Q Consensus       480 ~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~  559 (636)
                      ++++++.+...++++++|+|.++.+|.+++.++.+. ..++......+..|+....+++++.+|++...|.+ ..+.+.+
T Consensus         3 i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~-~~~~~~~   80 (139)
T cd05013           3 LEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRL-GKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-KETVEAA   80 (139)
T ss_pred             HHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHc-CCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCC-HHHHHHH
Confidence            456777778889999999999999999999999876 55777777788888888888888888888876665 4567788


Q ss_pred             HHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659          560 QQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQV  595 (636)
Q Consensus       560 ~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~  595 (636)
                      +.++++|.++++|+.........  -.|..+.+|..
T Consensus        81 ~~a~~~g~~iv~iT~~~~~~l~~--~~d~~i~~~~~  114 (139)
T cd05013          81 EIAKERGAKVIAITDSANSPLAK--LADIVLLVSSE  114 (139)
T ss_pred             HHHHHcCCeEEEEcCCCCChhHH--hcCEEEEcCCC
Confidence            89999999999999987654421  35678888753

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.

>PRK00973 glucose-6-phosphate isomerase; Provisional

Probab=98.29  E-value=0.00013  Score=78.68  Aligned_cols=106  Identities=19%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhc----------CCcEEEeeccc---hhcccCCCC-CCcEEEE
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELS----------DLPVTMEIASD---LVDRQAPIY-REDTAVF  372 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~----------~~~~~~~~~~e---~~~~~~~~~-~~dlvI~  372 (636)
                      +.++++.+.++..+.|+++|+|+|+..+..+...+....          +..+.+.+..+   +......++ +++++|+
T Consensus        59 ~~~~~~~~~~~~~~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~l~~~~Tl~iv  138 (446)
T PRK00973         59 DSYEELKEWSKNFDNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDVIDLEKTLFNV  138 (446)
T ss_pred             HHHHHHHHHhhcCCEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHhCCcccEEEEE
Confidence            355555555556799999999999998888877665421          11233322222   211122234 6789999


Q ss_pred             EcCCCCCHHHHHHHHHHHH--------cCCeEEEEEcCCCCccccccC
Q 006659          373 VSQSGETADTLQALEYASE--------NGALCVGITNTVGSAIARKTH  412 (636)
Q Consensus       373 iS~SG~t~e~i~al~~ak~--------~g~~vi~IT~~~~s~La~~ad  412 (636)
                      +|.||+|.||+.+.+.+++        .+..+|+||+..+++|.+.|+
T Consensus       139 iSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~  186 (446)
T PRK00973        139 ISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAE  186 (446)
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHH
Confidence            9999999999999998876        456899999976777888776

>PRK14096 pgi glucose-6-phosphate isomerase; Provisional

Probab=98.26  E-value=0.00026  Score=77.46  Aligned_cols=94  Identities=23%  Similarity=0.267  Sum_probs=67.4

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEEeeccc---hhcccCCC---CCCcEEEEEcCCCCCHHHHHHHHHHH
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASD---LVDRQAPI---YREDTAVFVSQSGETADTLQALEYAS  390 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~~~~~e---~~~~~~~~---~~~dlvI~iS~SG~t~e~i~al~~ak  390 (636)
                      ..+.|+++|+|+|+.....+...+.... ...+.+.+..+   +......+   .+++++|++|.||.|.||+..++.++
T Consensus       113 ~~~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~TLviViSKSGtT~ET~~n~~~~~  192 (528)
T PRK14096        113 KFTDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDRVLAELGDRLATTLVVVISKSGGTPETRNGMLEAK  192 (528)
T ss_pred             CCCeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999988888877776532 23343333222   22222223   36889999999999999999888655


Q ss_pred             H----cC----CeEEEEEcCCCCccccccC
Q 006659          391 E----NG----ALCVGITNTVGSAIARKTH  412 (636)
Q Consensus       391 ~----~g----~~vi~IT~~~~s~La~~ad  412 (636)
                      +    +|    ..+|+||+ .+++|.+.++
T Consensus       193 ~~l~~~G~~~~~h~VAVT~-~~s~L~~~A~  221 (528)
T PRK14096        193 AAYEAAGLDFASHAVAITM-KGSKLDQLAQ  221 (528)
T ss_pred             HHHHhhcccccceEEEEEC-CCcHHhhhcc
Confidence            4    34    57999998 6889999883

>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI)

Probab=98.17  E-value=7.2e-05  Score=71.31  Aligned_cols=139  Identities=14%  Similarity=0.174  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      .+.++++++.+...++++++|.|.++.+|...+.++... ++++....  +.   ....+++++.+|++...|.+ ..+.
T Consensus        20 ~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~--~~---~~~~~~~~D~vI~iS~sG~t-~~~i   92 (179)
T cd05005          20 EEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHL-GLNVYVVG--ET---TTPAIGPGDLLIAISGSGET-SSVV   92 (179)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhC-CCeEEEeC--CC---CCCCCCCCCEEEEEcCCCCc-HHHH
Confidence            466788888898999999999999999999999998754 44554432  21   12346778888888766654 4556


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch--------hh------HHHHHHHHHHHHHHHHHcCCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL--------QP------VINIVPLQLLAYHLTVLRGYN  622 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~~------~~~~v~~q~la~~lA~~~G~~  622 (636)
                      ++++.++++|.+++.|++........  .+|..+.+|......        .+      +..++.++.+...++...+..
T Consensus        93 ~~~~~ak~~g~~iI~IT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ld~l~~~~~~~~~~~  170 (179)
T cd05005          93 NAAEKAKKAGAKVVLITSNPDSPLAK--LADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVFLDAVIAKLMEELGVS  170 (179)
T ss_pred             HHHHHHHHCCCeEEEEECCCCCchHH--hCCEEEEeCCcccccCCCCccccccCccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            78889999999999999877654431  356778887532221        12      234456799999988888876


Q ss_pred             CC
Q 006659          623 VD  624 (636)
Q Consensus       623 pd  624 (636)
                      +.
T Consensus       171 ~~  172 (179)
T cd05005         171 EE  172 (179)
T ss_pred             HH
Confidence            54

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.

>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=98.15  E-value=2e-05  Score=70.41  Aligned_cols=99  Identities=14%  Similarity=0.177  Sum_probs=81.0

Q ss_pred             eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659          492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV  571 (636)
Q Consensus       492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v  571 (636)
                      +++++|.|.++.+|.+++.++....+.++..+...++.|.+.. +++++.+|++...|.+.+ +.+.++.++++|.+++.
T Consensus         1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~I~iS~sG~t~e-~~~~~~~a~~~g~~vi~   78 (126)
T cd05008           1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPL-LDEDTLVIAISQSGETAD-TLAALRLAKEKGAKTVA   78 (126)
T ss_pred             CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCC-CCCCcEEEEEeCCcCCHH-HHHHHHHHHHcCCeEEE
Confidence            4789999999999999999999999888888887788876654 778888888887776654 77889999999999999


Q ss_pred             EecCCCCcCCCCCCcceEEEcCC
Q 006659          572 MCSKGDAASIFPGGSCRVIEVPQ  594 (636)
Q Consensus       572 i~~~~~~~~~~~~~~~~~~~~p~  594 (636)
                      |++..+..+..  .+|..+.+|.
T Consensus        79 iT~~~~s~la~--~ad~~l~~~~   99 (126)
T cd05008          79 ITNVVGSTLAR--EADYVLYLRA   99 (126)
T ss_pred             EECCCCChHHH--hCCEEEEecC
Confidence            99987654432  3567787775

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>cd05710 SIS_1 A subgroup of the SIS domain

Probab=98.15  E-value=1.8e-05  Score=70.11  Aligned_cols=114  Identities=11%  Similarity=0.052  Sum_probs=89.5

Q ss_pred             eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659          492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV  571 (636)
Q Consensus       492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v  571 (636)
                      +++++|.|.++.+|.+++.++.+...+++..+...++.|.....+++++.+|++...|.+ ..+.+.++.++++|.+++.
T Consensus         1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t-~~~~~~~~~a~~~g~~vi~   79 (120)
T cd05710           1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNT-KETVAAAKFAKEKGATVIG   79 (120)
T ss_pred             CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCC-hHHHHHHHHHHHcCCeEEE
Confidence            478999999999999999999998888999888889998877778888888888876654 5567788899999999999


Q ss_pred             EecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHH
Q 006659          572 MCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPL  608 (636)
Q Consensus       572 i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~  608 (636)
                      |++..+..+..  .+|..+.+|...+...++-+++.+
T Consensus        80 iT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~~~  114 (120)
T cd05710          80 LTDDEDSPLAK--LADYVIVYGFEIDAVEEKYLLLYM  114 (120)
T ss_pred             EECCCCCcHHH--hCCEEEEccCCcCccchHHHHHHH
Confidence            99987654421  357778888543444455444443

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional

Probab=98.11  E-value=5.7e-05  Score=79.63  Aligned_cols=131  Identities=8%  Similarity=0.039  Sum_probs=104.2

Q ss_pred             HHHhhhHHHHHHHHhc-hHHHHHHHHHhc--CCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Q 006659          461 DGLCDLPNKVREVLKL-DQEMKVLAKQLI--AEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVD  537 (636)
Q Consensus       461 ~~l~~l~~~~~~~~~~-~~~~~~~a~~l~--~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~  537 (636)
                      .+.++-|+.+++.++. .+..+++++.+.  +.++++|+|+|.++-.|..++..+....++++..+...+|.+......+
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~~~~~   91 (340)
T PRK11382         12 LVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLD   91 (340)
T ss_pred             HHHhhchHHHHHHHHhhhHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCCcCCC
Confidence            3456677777777765 566777777775  4789999999999999999999998989999999999999986665578


Q ss_pred             CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCC
Q 006659          538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQ  594 (636)
Q Consensus       538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~  594 (636)
                      +++.+|++...|++.+ +.+.++.++++|.+++.||+..+..+.  ..+|..+.++.
T Consensus        92 ~~~lvI~iS~SGeT~e-~i~al~~ak~~Ga~~I~IT~~~~S~L~--~~ad~~l~~~a  145 (340)
T PRK11382         92 DRCAVIGVSDYGKTEE-VIKALELGRACGALTAAFTKRADSPIT--SAAEFSIDYQA  145 (340)
T ss_pred             CCCEEEEEcCCCCCHH-HHHHHHHHHHcCCeEEEEECCCCChHH--HhCCEEEEeCC
Confidence            8888888877776654 677888999999999999998766542  23567777773

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.06  E-value=0.00018  Score=75.42  Aligned_cols=142  Identities=16%  Similarity=0.175  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhcCC-CeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          478 QEMKVLAKQLIAE-QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       478 ~~~~~~a~~l~~~-~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      +...+.++.+... ++++++|.|.++.+|.+++.||.. ...++..+...++.|.....++++..+|++...|.+ ..+.
T Consensus        29 ~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-~~~~  106 (321)
T PRK11543         29 DDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLAS-TGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA-KELD  106 (321)
T ss_pred             HHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHc-CCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCc-HHHH
Confidence            3456666666565 589999999999999999999986 666777776667777777778889999998877765 4567


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-------chh-hHHHHHHHHHHHHHHHHHcCCCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-------CLQ-PVINIVPLQLLAYHLTVLRGYNV  623 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~-~~~~~v~~q~la~~lA~~~G~~p  623 (636)
                      +.++.++++|.+++.||......+..  -+|..+.++...+       .++ .+...+..+.+...+...+|.++
T Consensus       107 ~~~~~ak~~g~~vI~iT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~ss~~~~~~~~dsL~~~~l~~~g~~~  179 (321)
T PRK11543        107 LIIPRLEDKSIALLAMTGKPTSPLGL--AAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQARGFNE  179 (321)
T ss_pred             HHHHHHHHcCCeEEEEECCCCChhHH--hCCEEEEcCCccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            88999999999999999987665432  3567776663211       122 22234456778888888889888

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=98.04  E-value=4.9e-05  Score=86.91  Aligned_cols=140  Identities=14%  Similarity=0.127  Sum_probs=106.8

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~  384 (636)
                      +.++++++.+..+++++++|.|.++.+|..++-.+..+..+++..+...||.|-+. .++++..||++...+.+ ..+..
T Consensus       514 ~~~~~~a~~l~~~~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~~  593 (670)
T PTZ00394        514 DPVKALAARLKESSSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSKS  593 (670)
T ss_pred             HHHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHHH
Confidence            34677888889999999999999999999999999998889999999999988754 46778888888766665 45778


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      +++..+++|+++++||+..+..+....+..+.++...+.    ... ...+..+.+|+..++..++.
T Consensus       594 ~~~evk~~g~~vi~I~~~~~~~~~~~~~~~i~vp~~~~~----l~p-ll~~iplQllAy~~A~~rG~  655 (670)
T PTZ00394        594 AVQQVKARGGAVVVFATEVDAELKAAASEIVLVPKTVDC----LQC-VVNVIPFQLLAYYMALLRGN  655 (670)
T ss_pred             HHHHHHHcCCeEEEEECCCcchhcccCCcEEECCCCchh----HhH-HHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999986544555666777777753321    122 22344557778777766654

>cd04795 SIS SIS domain

Probab=97.95  E-value=1.9e-05  Score=65.40  Aligned_cols=80  Identities=18%  Similarity=0.221  Sum_probs=71.0

Q ss_pred             EEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccc-cccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659          493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGP-LALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV  571 (636)
Q Consensus       493 ~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp-~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v  571 (636)
                      ++++|.|.++.+|.+++.++.+..+.++......++.|++ ....++++.++++...+.+ ..+.++++.++++|.++++
T Consensus         1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t-~~~~~~~~~a~~~g~~ii~   79 (87)
T cd04795           1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRT-EELLAALEIAKELGIPVIA   79 (87)
T ss_pred             CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCC-HHHHHHHHHHHHcCCeEEE
Confidence            4789999999999999999999988999999999999998 7778889999999876654 5577889999999999999


Q ss_pred             Ee
Q 006659          572 MC  573 (636)
Q Consensus       572 i~  573 (636)
                      |+
T Consensus        80 it   81 (87)
T cd04795          80 IT   81 (87)
T ss_pred             Ee
Confidence            87

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=97.95  E-value=0.0004  Score=66.18  Aligned_cols=138  Identities=14%  Similarity=0.201  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      .+.++++++.+...++++++|.|.++.+|.+.+.|+...- ..+...  .+. |  ...+++++.+|++.-.|.+ ..+.
T Consensus        17 ~~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~--~~~-~--~~~~~~~Dv~I~iS~sG~t-~~~i   89 (179)
T TIGR03127        17 EEELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLG-FNVYVV--GET-T--TPSIKKGDLLIAISGSGET-ESLV   89 (179)
T ss_pred             HHHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCC-CeEEEe--CCc-c--cCCCCCCCEEEEEeCCCCc-HHHH
Confidence            4567788888888999999999999999999999987643 344333  222 1  2356788888888766654 5566


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch--------hhH------HHHHHHHHHHHHHHHHcCCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL--------QPV------INIVPLQLLAYHLTVLRGYN  622 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~~~------~~~v~~q~la~~lA~~~G~~  622 (636)
                      +.++.++++|.+++.||......+..  .+|..+.+|...+..        .|+      ..++.++.+...+....+.+
T Consensus        90 ~~~~~ak~~g~~ii~IT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ild~l~~~~~~~~~~~  167 (179)
T TIGR03127        90 TVAKKAKEIGATVAAITTNPESTLGK--LADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKGLD  167 (179)
T ss_pred             HHHHHHHHCCCeEEEEECCCCCchHH--hCCEEEEeCCccccCCCCCccccCcCchHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            78888999999999999877654432  356777777432221        121      23456788888888887776


Q ss_pred             C
Q 006659          623 V  623 (636)
Q Consensus       623 p  623 (636)
                      .
T Consensus       168 ~  168 (179)
T TIGR03127       168 E  168 (179)
T ss_pred             H
Confidence            5

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.91  E-value=0.00063  Score=71.47  Aligned_cols=142  Identities=18%  Similarity=0.172  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhcCC-CeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          478 QEMKVLAKQLIAE-QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       478 ~~~~~~a~~l~~~-~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      ...+++++.+... ++++++|.|.++.+|.+++.||.. .++++......++.|-....++++..+|++...|.+ ..+.
T Consensus        34 ~~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t-~~~~  111 (326)
T PRK10892         34 QDFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFAS-TGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES-SEIL  111 (326)
T ss_pred             HHHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhc-CCceeEEeChHHhhccccccCCCCCEEEEEeCCCCC-HHHH
Confidence            3577778777666 699999999999999999999986 666776665555656555567788888888766654 5567


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-------chhhH-HHHHHHHHHHHHHHHHcCCCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-------CLQPV-INIVPLQLLAYHLTVLRGYNV  623 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~-~~~v~~q~la~~lA~~~G~~p  623 (636)
                      +.++.++++|.+++.|++.....+..  .+|..+.++...+       .+..+ ......+.+...+...+|..-
T Consensus       112 ~~~~~ak~~g~~vi~iT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~~~s~ia~~~~~dsL~~~~l~~~g~~~  184 (326)
T PRK10892        112 ALIPVLKRLHVPLICITGRPESSMAR--AADIHLCVKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTA  184 (326)
T ss_pred             HHHHHHHHCCCcEEEEECCCCCcccc--cCCEEEEeCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            78899999999999999988765532  3567777662221       12222 234445777777888888776

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length

Probab=97.86  E-value=5.3e-05  Score=71.74  Aligned_cols=113  Identities=15%  Similarity=0.251  Sum_probs=80.0

Q ss_pred             CCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhh
Q 006659          116 SHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLE  195 (636)
Q Consensus       116 ~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  195 (636)
                      -||-.+...+++.=++-|.|.|...|++++..    -++.++.-++...|...-++ |    +-+.      -.+++.|+
T Consensus        66 l~pR~F~~~DdIfCiF~G~L~Nl~~L~qqYGL----sK~~nEa~~vIEAYrtLRDR-g----PyPa------dqvv~~L~  130 (228)
T PF12481_consen   66 LHPRLFAGVDDIFCIFLGSLENLCSLRQQYGL----SKGANEAMFVIEAYRTLRDR-G----PYPA------DQVVKDLE  130 (228)
T ss_pred             cccccccccCCEEEEEecchhhHHHHHHHhCc----CcCcchhhhHHHHHHHhhcc-C----CCCh------HHHHHhcc
Confidence            36644444567888899999999999998632    25566777777777544333 1    1111      45789999


Q ss_pred             hhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccccccc------eeeccCCCe
Q 006659          196 GAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSILKFD------NAKGRNGGT  244 (636)
Q Consensus       196 G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~~~~~------~~~~~~g~~  244 (636)
                      |.|+|+++|.. .+.+|+|||.   -|||+|+..     .|++..++.      ++..++|-+
T Consensus       131 G~FaFVlyD~~-~~tvf~A~d~~G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~  192 (228)
T PF12481_consen  131 GSFAFVLYDSK-TGTVFVARDSDGSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCF  192 (228)
T ss_pred             CceEEEEEecC-CCcEEEeecCCCCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceE
Confidence            99999999998 7999999987   799999987     344433332      125667777

There are two conserved sequence motifs: YGL and LRDR.

>PRK14095 pgi glucose-6-phosphate isomerase; Provisional

Probab=97.86  E-value=0.00015  Score=79.34  Aligned_cols=95  Identities=23%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEe---eccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHHH----
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTME---IASDLVDRQAPIY-REDTAVFVSQSGETADTLQALE----  387 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~---~~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~----  387 (636)
                      ..+.|+++|+|+|+.....+...+..+.  +..+.+.   ++..+......++ +++++|++|.||.|.||+..++    
T Consensus       150 ~~~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TLfiviSKSGtT~ETl~n~~~~r~  229 (533)
T PRK14095        150 KFTTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTLFIVVSKSGTTLETAANEEFVRD  229 (533)
T ss_pred             ccceEEEEecCcchHhHHHHHHHHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4789999999999855555444444332  2233322   2222222222223 6789999999999999999844    


Q ss_pred             HHHHcC----CeEEEEEcCCCCccccccCe
Q 006659          388 YASENG----ALCVGITNTVGSAIARKTHC  413 (636)
Q Consensus       388 ~ak~~g----~~vi~IT~~~~s~La~~ad~  413 (636)
                      .+++.|    ..+|+||. ..+++++..++
T Consensus       230 wl~~~G~~~~~h~VaVT~-~~s~l~~~~~~  258 (533)
T PRK14095        230 ALKKAGLDYKKHFIAVTS-EGSPMDDESGY  258 (533)
T ss_pred             HHHHcCccccceEEEEEC-CchHHHhhcCc
Confidence            444455    57999998 57788876665

>PRK11302 DNA-binding transcriptional regulator HexR; Provisional

Probab=97.86  E-value=0.00033  Score=72.04  Aligned_cols=139  Identities=14%  Similarity=0.122  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      .+.+.++++.+...++++++|.|.++.+|.+++.++.. ..+++..+.-..+..-.....+++..+|+|...|.+ ..+.
T Consensus       115 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~D~vI~iS~sG~t-~~~~  192 (284)
T PRK11302        115 PSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFR-FNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRT-KSLV  192 (284)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHh-cCCceEecCCHHHHHHHHHhCCCCCEEEEEeCCCCC-HHHH
Confidence            35567788888889999999999999999999888876 455655543211111112345788888888776665 4577


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc--chhhH----HHHHHHHHHHHHHHHHcC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED--CLQPV----INIVPLQLLAYHLTVLRG  620 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~----~~~v~~q~la~~lA~~~G  620 (636)
                      ++++.++++|.++++||+. ...+.  ..+|..+.+|...+  ...++    ..+..++.|...+...+|
T Consensus       193 ~~~~~ak~~g~~vI~IT~~-~s~l~--~~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~l~~~~~  259 (284)
T PRK11302        193 ELAQLARENGATVIAITSA-GSPLA--REATLALTLDVPEDTDIYMPMVSRIAQLTVIDVLATGFTLRRG  259 (284)
T ss_pred             HHHHHHHHcCCeEEEECCC-CChhH--HhCCEEEecCCCccchhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7899999999999999974 33332  23567777763221  11222    233355777777776665

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional

Probab=97.84  E-value=0.00038  Score=71.88  Aligned_cols=138  Identities=13%  Similarity=0.090  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHH
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQS  557 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~  557 (636)
                      +.+.++++.+..++++++.|.|.++.+|.+.+.++... ++++..+.-.+........+++++.+|+|...|.+. .+.+
T Consensus       128 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~-~~~~  205 (292)
T PRK11337        128 DEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRI-GVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTS-DVIE  205 (292)
T ss_pred             HHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhC-CCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCH-HHHH
Confidence            56777888889999999999999999999999998864 556655533333222334567888888888766654 4778


Q ss_pred             HHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch--h----hHHHHHHHHHHHHHHHHHc
Q 006659          558 VIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL--Q----PVINIVPLQLLAYHLTVLR  619 (636)
Q Consensus       558 ~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~--~----~~~~~v~~q~la~~lA~~~  619 (636)
                      +++.++++|.++++||.........  .+|..+.+|.....+  .    .+..+..++.|...++..+
T Consensus       206 ~~~~ak~~g~~ii~IT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~s~~~~~~i~d~L~~~l~~~~  271 (292)
T PRK11337        206 AVELAKKNGAKIICITNSYHSPIAK--LADYVICSTAQGSPLLGENAAARIAQLNILDAFFVSVAQLN  271 (292)
T ss_pred             HHHHHHHCCCeEEEEeCCCCChhHH--hCCEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999887654421  357778887432211  1    2223445566666666554

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=97.81  E-value=0.00028  Score=80.61  Aligned_cols=139  Identities=17%  Similarity=0.143  Sum_probs=105.8

Q ss_pred             chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHHH
Q 006659          308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQA  385 (636)
Q Consensus       308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~a  385 (636)
                      .++++++.+...++++++|.|.++.+|..++-.+..+..+++..+...||.|.+. .+++++.+|++...|.+ ..+.++
T Consensus       452 ~~~~~a~~l~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~  531 (607)
T TIGR01135       452 SIAELAERYADKHNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSLFEKTKSN  531 (607)
T ss_pred             HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCCCEEEEEeCchHHHHHHHH
Confidence            4677778888999999999999999999999999999899999999999988754 46778888888777764 556788


Q ss_pred             HHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          386 LEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       386 l~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      ++.++++|++++.|++.........+|..+.++...+.     -+....+..+.+|+..++..++.
T Consensus       532 ~~~~~~~g~~v~~I~~~~~~~~~~~~~~~i~~p~~~~~-----l~pl~~~~p~Qlla~~~A~~~G~  592 (607)
T TIGR01135       532 VEEVKARGARVIVFADEDDEFLESVADDVIKLPEVEEL-----LAPIVYTVPLQLLAYHIALAKGT  592 (607)
T ss_pred             HHHHHHcCCeEEEEECCCcccccccCCcEEECCCCCcc-----chHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999986432233456677777653221     12223356667788888776654

The member from Methanococcus jannaschii contains an intein.

>COG1737 RpiR Transcriptional regulators [Transcription]

Probab=97.80  E-value=0.00049  Score=70.54  Aligned_cols=141  Identities=16%  Similarity=0.188  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      .+...+.++.+..+++++++|.|.+..+|.+++.||..+-. ++..++-..+.-.....+++++.+|+|.-.|.+ ..+.
T Consensus       117 ~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~-~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t-~e~i  194 (281)
T COG1737         117 EEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGL-NVVALSDTHGQLMQLALLTPGDVVIAISFSGYT-REIV  194 (281)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCC-ceeEecchHHHHHHHHhCCCCCEEEEEeCCCCc-HHHH
Confidence            45677788889999999999999999999999999998876 333333332222344567889999999876654 4566


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-ch-----hhHHHHHHHHHHHHHHHHHcCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-CL-----QPVINIVPLQLLAYHLTVLRGY  621 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-~~-----~~~~~~v~~q~la~~lA~~~G~  621 (636)
                      +.++.++++|++++.||+....++.  ..+|..+.+|..++ .+     +-+..+..++.|...++..++.
T Consensus       195 ~~a~~ak~~ga~vIaiT~~~~spla--~~Ad~~L~~~~~~~~~~~~~~~s~~a~l~l~d~L~~~~~~~~~~  263 (281)
T COG1737         195 EAAELAKERGAKVIAITDSADSPLA--KLADIVLLVPVAEESFFRSPISSRIAQLALIDALITAVAQRRGE  263 (281)
T ss_pred             HHHHHHHHCCCcEEEEcCCCCCchh--hhhceEEeccCccccchhhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            7888999999999999998665543  23577788764322 22     2334555668888888776653

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=97.78  E-value=0.00026  Score=77.80  Aligned_cols=139  Identities=17%  Similarity=0.166  Sum_probs=112.3

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCC-CHHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGE-TADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~-t~e~i~  384 (636)
                      +.+.++++.+.+.++++++|.|..+..|+.++-.+....-+++..+...|+.|.+- .++++..||++.-.+. -..+..
T Consensus       443 ~~i~~~a~~l~~~~~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pVi~i~p~~~~~ek~~s  522 (597)
T COG0449         443 EKIKELAKRLADAKDFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKS  522 (597)
T ss_pred             HHHHHHHHHhcccCCEEEEcCCCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcCCCcEEEEeCcchHHHHHHH
Confidence            46777888899999999999999999999999999999999999999999988764 5689999999998885 678999


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIST  452 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~  452 (636)
                      .++..+.+|++++.|+....  .+...|..+.++...|.     -+-...+.-+++|+..++..++-+
T Consensus       523 ni~Ev~aRg~~~i~i~~~~~--~~~~~~~~i~~p~~~e~-----laPi~~~iPlQLLAY~iA~~kG~d  583 (597)
T COG0449         523 NIQEVRARGGKIIVIADEGD--VAEDGDDLILLPEVDEL-----LAPLLYTIPLQLLAYHIALAKGID  583 (597)
T ss_pred             HHHHHHcCCCeEEEEecCCc--ccccCceEEecCCCcch-----hhhHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999755  55566777776664443     122233444788888888766643

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=97.76  E-value=0.00045  Score=78.85  Aligned_cols=139  Identities=18%  Similarity=0.190  Sum_probs=104.0

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~  384 (636)
                      +.++++++.+...++++++|.|.++.+|..++-.+.....+++..+...||.|.+. .+++++.+|++.-.|.+ ..+.+
T Consensus       449 ~~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~  528 (604)
T PRK00331        449 EQIEELAEDFADARNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELYEKTKS  528 (604)
T ss_pred             HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCCceEEEEEcCchHHHHHHH
Confidence            34677788888999999999999999999999999999899999999999988753 46778888888777764 44567


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      +++..+++|.+++.||+... .+....|..+.++..++     .-+....+..+.+|+..++..++.
T Consensus       529 ~~~~~~~~g~~v~~I~~~~~-~~~~~~~~~~~~~~~~~-----~~~pl~~~ip~Qlla~~~A~~~G~  589 (604)
T PRK00331        529 NIQEVKARGARVIVIADEGD-EVAEEADDVIEVPEVHE-----LLAPLLYVVPLQLLAYHVALARGT  589 (604)
T ss_pred             HHHHHHhCCCEEEEEEcCCc-cccccCCceEECCCCcc-----chhHHHHHHHHHHHHHHHHHHcCC
Confidence            88899999999999998543 33345566677664322     122223344567788877766554

>cd05014 SIS_Kpsf KpsF-like protein

Probab=97.75  E-value=0.00053  Score=61.27  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=76.7

Q ss_pred             eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659          492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV  571 (636)
Q Consensus       492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v  571 (636)
                      +++++|.|.++.+|.+.+.++.. ...++..+...++..-....+++++.+|++.-.|.+ ..+.+.++.++++|.+++.
T Consensus         2 ~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t-~~~~~~~~~a~~~g~~vi~   79 (128)
T cd05014           2 KVVVTGVGKSGHIARKIAATLSS-TGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGET-DELLNLLPHLKRRGAPIIA   79 (128)
T ss_pred             eEEEEeCcHhHHHHHHHHHHhhc-CCCceEEcccchhhccccCcCCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEE
Confidence            68999999999999999999854 577777776666555555667888888888766654 5566788889999999999


Q ss_pred             EecCCCCcCCCCCCcceEEEcCC
Q 006659          572 MCSKGDAASIFPGGSCRVIEVPQ  594 (636)
Q Consensus       572 i~~~~~~~~~~~~~~~~~~~~p~  594 (636)
                      |+...+..+..  .+|..+.+|.
T Consensus        80 iT~~~~s~la~--~ad~~l~~~~  100 (128)
T cd05014          80 ITGNPNSTLAK--LSDVVLDLPV  100 (128)
T ss_pred             EeCCCCCchhh--hCCEEEECCC
Confidence            99987765532  3577788874

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>PRK13937 phosphoheptose isomerase; Provisional

Probab=97.71  E-value=0.0019  Score=61.99  Aligned_cols=117  Identities=14%  Similarity=0.114  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhcccccccccc---------ccc-cccc----c-ccc
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILA---------GEM-KHGP----L-ALV  536 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~---------~Ef-~HGp----~-~~~  536 (636)
                      ++.++++++.+...++++++|.|.++.+|...+..+.     +-..+++..+..         .++ .+..    . ...
T Consensus        25 ~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~  104 (188)
T PRK13937         25 AKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG  104 (188)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence            4566778888899999999999999998877654333     223454444320         010 0101    1 135


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE  596 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~  596 (636)
                      ++++.+|++...|.+ ..+.+.++.++++|.+++.||+.....+.  ..+|..+.+|..+
T Consensus       105 ~~~Dl~i~iS~sG~t-~~~~~~~~~ak~~g~~~I~iT~~~~s~L~--~~ad~~l~~~~~e  161 (188)
T PRK13937        105 RPGDVLIGISTSGNS-PNVLAALEKARELGMKTIGLTGRDGGKMK--ELCDHLLIVPSDD  161 (188)
T ss_pred             CCCCEEEEEeCCCCc-HHHHHHHHHHHHCCCeEEEEeCCCCChhH--HhCCEEEEeCCCC
Confidence            678888888876655 55677889999999999999997765442  1357788888643

>PRK11557 putative DNA-binding transcriptional regulator; Provisional

Probab=97.70  E-value=0.00073  Score=69.25  Aligned_cols=137  Identities=11%  Similarity=0.060  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccc---ccccCCCCeEEEEeCCcchH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPL---ALVDENLPILVIATRDACFS  553 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~---~~~~~~~~vi~l~~~~~~~~  553 (636)
                      .+.+.++++.+...++++++|.|.++.+|.+.+.+|.-. ++++...  .+ .|...   ..+++++.+|+|...+. ..
T Consensus       115 ~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~-g~~~~~~--~d-~~~~~~~~~~~~~~Dv~I~iS~sg~-~~  189 (278)
T PRK11557        115 EEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKI-GINAVAE--RD-MHALLATVQALSPDDLLLAISYSGE-RR  189 (278)
T ss_pred             HHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhC-CCeEEEc--CC-hHHHHHHHHhCCCCCEEEEEcCCCC-CH
Confidence            356777888889999999999999999999999998864 3444332  22 23322   24677887777766554 45


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-----chhhHH-HHHHHHHHHHHHHHHcC
Q 006659          554 KQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-----CLQPVI-NIVPLQLLAYHLTVLRG  620 (636)
Q Consensus       554 ~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~-~~v~~q~la~~lA~~~G  620 (636)
                      .+.+.++.++++|.++++||.........  .+|..+..+...+     .+.... .+..+++|...++...+
T Consensus       190 ~~~~~~~~ak~~ga~iI~IT~~~~s~la~--~ad~~l~~~~~~~~~~~~~~~s~~~~~~l~d~L~~~~~~~~~  260 (278)
T PRK11557        190 ELNLAADEALRVGAKVLAITGFTPNALQQ--RASHCLYTIAEEQATRSAAISSTHAQGMLTDLLFMALIQQDL  260 (278)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCCCCchHH--hCCEEEEeCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            56778889999999999999976554422  3466666543211     233333 33345777777666554

>PRK10886 DnaA initiator-associating protein DiaA; Provisional

Probab=97.68  E-value=0.002  Score=61.94  Aligned_cols=117  Identities=15%  Similarity=0.126  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccccc--------------cccccccc-ccc
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILAG--------------EMKHGPLA-LVD  537 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~~--------------Ef~HGp~~-~~~  537 (636)
                      +.++.+++.+...++++++|.|.+..+|...+.+|.     +-..+|+......              +.+=.++. ..+
T Consensus        29 ~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~  108 (196)
T PRK10886         29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH  108 (196)
T ss_pred             HHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHcCC
Confidence            445667777788999999999999999999999884     3445555543211              11111122 256


Q ss_pred             CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCC-CcceEEEcCCC
Q 006659          538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPG-GSCRVIEVPQV  595 (636)
Q Consensus       538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~-~~~~~~~~p~~  595 (636)
                      ++..+|+|...|.+ +.+.+.++.++++|.+++.|+..+...+.... ..|..+.+|..
T Consensus       109 ~gDvli~iS~SG~s-~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~  166 (196)
T PRK10886        109 AGDVLLAISTRGNS-RDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH  166 (196)
T ss_pred             CCCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCC
Confidence            78888888877655 55778899999999999999998766543211 25788999964

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=97.67  E-value=0.00074  Score=77.63  Aligned_cols=139  Identities=9%  Similarity=0.090  Sum_probs=102.8

Q ss_pred             chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCC-CHHHHHH
Q 006659          308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGE-TADTLQA  385 (636)
Q Consensus       308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~-t~e~i~a  385 (636)
                      .++++++.+...++++++|.|..+..|+.++..+..+..+++..+...||.|-+. .+++++.+|++.-.+. -..+.++
T Consensus       523 ~~~~~a~~l~~~~~~~~lG~G~~yg~A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~l~~~~~~~~~~~~~  602 (680)
T PLN02981        523 EMKELAELLIDEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIVIATRDACFSKQQSV  602 (680)
T ss_pred             HHHHHHHHhhCCCcEEEEeCCCCHHHHHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEEEEcCCchHHHHHHH
Confidence            4677888888999999999999999999999999998889999999999988764 5678888888875665 4567799


Q ss_pred             HHHHHHcCCeEEEEEcCCCCcc--ccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          386 LEYASENGALCVGITNTVGSAI--ARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       386 l~~ak~~g~~vi~IT~~~~s~L--a~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      ++.++++|.++++|++..+...  ....|..+.++..++.    ...+ ..+..+.+|+..++..++.
T Consensus       603 ~~el~~~g~~vi~I~~~~~~~~~~~~~~~~~i~~p~~~~~----l~pl-l~iiplQllAy~~A~~~G~  665 (680)
T PLN02981        603 IQQLRARKGRLIVICSKGDASSVCPSGGCRVIEVPQVEDC----LQPV-INIVPLQLLAYHLTVLRGH  665 (680)
T ss_pred             HHHHHHcCCEEEEEEcCCcchhccccCCCeEEEEeccchH----HhHH-HHHHHHHHHHHHHHHHhCC
Confidence            9999999999999998643211  1233555666542221    1122 2334467777777766554

>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]

Probab=97.67  E-value=0.0012  Score=68.88  Aligned_cols=135  Identities=14%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             HHHhhhHHHHHHHHhc-hHHHHHHHHHhcCC--CeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Q 006659          461 DGLCDLPNKVREVLKL-DQEMKVLAKQLIAE--QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVD  537 (636)
Q Consensus       461 ~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~--~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~  537 (636)
                      +++++-|....+.++. .+...++++.+...  .+++++|+|.++.+|+-++--++.-...+..++...||.|-+.-...
T Consensus         7 ~e~~~~p~~~~~~~~~~~~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se~~~~~~~~~~   86 (340)
T COG2222           7 REIEQQPAVVARLLEANRAVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASEFLTNGAKYLG   86 (340)
T ss_pred             HHHHhhHHHHHHHHHhhhhHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceeeeechhHHhccCccccC
Confidence            4455555556665554 55566677666444  69999999999999999999888888888999999999998888888


Q ss_pred             CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc
Q 006659          538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC  598 (636)
Q Consensus       538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~  598 (636)
                      ++..+|.+.-.|.+-| +...++.+++.|..++.|++..+..+.  ..+|+.+.++..++.
T Consensus        87 ~~~lvi~~S~SG~TpE-~vaa~~~a~~~ga~~i~lT~~~dSpLa--~~ad~~i~~~~~~e~  144 (340)
T COG2222          87 EDSLVIAFSQSGNTPE-SVAAAELAKEGGALTIALTNEEDSPLA--RAADYVIPYLAGEEA  144 (340)
T ss_pred             CCeEEEEEeCCCCCHH-HHHHHHHhccCCCeEEEEecCCCChhh--hcCCeeeeccCCchH
Confidence            8877777776666544 556777788889999999999887553  246888888865554

>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]

Probab=97.67  E-value=0.002  Score=61.31  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=85.8

Q ss_pred             cCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCC
Q 006659          488 IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKG  567 (636)
Q Consensus       488 ~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~  567 (636)
                      ....++++.|.|-+--+|+-.|-.|+= ...||....-.|..||..-++.++..++.|..+|++.+ +..++..+|+.|.
T Consensus        37 ~~~gkv~V~G~GkSG~Igkk~Aa~L~s-~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~e-l~~~~~~aK~~g~  114 (202)
T COG0794          37 ECKGKVFVTGVGKSGLIGKKFAARLAS-TGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKE-LLNLAPKAKRLGA  114 (202)
T ss_pred             hcCCcEEEEcCChhHHHHHHHHHHHHc-cCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHH-HHHHHHHHHHcCC
Confidence            346799999999998888877776654 45699999999999999999999999999998887654 5568888999999


Q ss_pred             eEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659          568 RLIVMCSKGDAASIFPGGSCRVIEVPQV  595 (636)
Q Consensus       568 ~v~vi~~~~~~~~~~~~~~~~~~~~p~~  595 (636)
                      +++.||...++.+..  .+|.++.+|..
T Consensus       115 ~liaiT~~~~SsLak--~aDvvl~ip~~  140 (202)
T COG0794         115 KLIAITSNPDSSLAK--AADVVLVIPVK  140 (202)
T ss_pred             cEEEEeCCCCChHHH--hcCeEEEccCc
Confidence            999999988775532  46788888853

>PRK13936 phosphoheptose isomerase; Provisional

Probab=97.66  E-value=0.0017  Score=62.77  Aligned_cols=119  Identities=18%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccc--------ccccccc------cc-ccc
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGIL--------AGEMKHG------PL-ALV  536 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~--------~~Ef~HG------p~-~~~  536 (636)
                      ++.++.+++.+...+++++.|.|.+..+|...+.||.     +...+++....        ..+-.|-      .. ...
T Consensus        30 ~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~  109 (197)
T PRK13936         30 AQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALG  109 (197)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhC
Confidence            3556777888899999999999999999999999887     34445554331        1111111      11 223


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCC-CCcceEEEcCCCC
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFP-GGSCRVIEVPQVE  596 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~-~~~~~~~~~p~~~  596 (636)
                      +++..+|+|...|.+ ..+.+.++.++++|.+++.||..+...+... ...|..+.+|...
T Consensus       110 ~~~Dv~i~iS~sG~t-~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~  169 (197)
T PRK13936        110 QPGDVLLAISTSGNS-ANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER  169 (197)
T ss_pred             CCCCEEEEEeCCCCc-HHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence            678888888876654 5577889999999999999998765433210 1257788888654

>PRK13938 phosphoheptose isomerase; Provisional

Probab=97.62  E-value=0.0019  Score=62.18  Aligned_cols=134  Identities=14%  Similarity=0.079  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccccccccccc----------------cccc
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILAGEMKHGP----------------LALV  536 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~~Ef~HGp----------------~~~~  536 (636)
                      +.++.+++.+....++++.|.|.+..+|...+.||.     +..++++....... .|-.                -...
T Consensus        33 ~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~-~~~~a~~nd~~~~~~~~~~~~~~~  111 (196)
T PRK13938         33 AIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANS-SHLTAVANDYDYDTVFARALEGSA  111 (196)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCCh-HHHHHhhccccHHHHHHHHHHhcC
Confidence            445566667888999999999999999999999985     33234443332222 1210                1335


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHH
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHL  615 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~l  615 (636)
                      +++..+|++...|.+ ..+.+.++.++++|.+++.|+......+..  .+|..+.+|..+.....-.-++..+.|+..+
T Consensus       112 ~~~DllI~iS~SG~t-~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~--~aD~~l~v~~~e~~~v~e~h~~~~h~l~~~v  187 (196)
T PRK13938        112 RPGDTLFAISTSGNS-MSVLRAAKTARELGVTVVAMTGESGGQLAE--FADFLINVPSRDTGRIQESHIVFIHAISEHV  187 (196)
T ss_pred             CCCCEEEEEcCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCChhhh--hCCEEEEeCCCchhhHHHHHHHHHHHHHHHH
Confidence            677888888776654 557788999999999999999877654422  3577888886433222222333445555444

>PRK15482 transcriptional regulator MurR; Provisional

Probab=97.60  E-value=0.0025  Score=65.59  Aligned_cols=134  Identities=10%  Similarity=0.011  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccc---ccccCCCCeEEEEeCCcchHH
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPL---ALVDENLPILVIATRDACFSK  554 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~---~~~~~~~~vi~l~~~~~~~~~  554 (636)
                      +.++++++.+..+++++++|.|.++.+|.+...++.-. +.++....   -.|...   ..++++..+|+|.-.|.+ ..
T Consensus       123 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-g~~~~~~~---d~~~~~~~~~~~~~~Dv~i~iS~sg~t-~~  197 (285)
T PRK15482        123 ARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI-GYRVACEA---DTHVQATVSQALKKGDVQIAISYSGSK-KE  197 (285)
T ss_pred             HHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhC-CCeeEEec---cHhHHHHHHhcCCCCCEEEEEeCCCCC-HH
Confidence            45677888888999999999999999999999998864 33443322   123322   235678888888776655 45


Q ss_pred             HHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch------hhHHHHHHHHHHHHHHHHH
Q 006659          555 QQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL------QPVINIVPLQLLAYHLTVL  618 (636)
Q Consensus       555 ~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~v~~q~la~~lA~~  618 (636)
                      +.++++.++++|++++.||+.....+.  ..+|..+.+|..+..+      +.+..+..+++|...++..
T Consensus       198 ~~~~~~~a~~~g~~iI~IT~~~~s~la--~~ad~~l~~~~~~~~~~~~~~ss~~~~~~~id~L~~~~~~~  265 (285)
T PRK15482        198 IVLCAEAARKQGATVIAITSLADSPLR--RLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQL  265 (285)
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCCCchH--HhCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            667888999999999999998765443  2357788887533322      2233334456665555444

>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily

Probab=97.52  E-value=0.0033  Score=59.70  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhc-----cccccccc--cccccc-------ccc------cccc
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVA-----LMHSEGIL--AGEMKH-------GPL------ALVD  537 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~-----~~~a~~~~--~~Ef~H-------Gp~------~~~~  537 (636)
                      +.++.+++.+...++++++|.|.++.+|.+++.+|.-..     .+++..+.  ..++.+       ..+      ..++
T Consensus        21 ~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (177)
T cd05006          21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ  100 (177)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence            334555555667899999999999999999998876332     45554443  222111       111      1367


Q ss_pred             CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC
Q 006659          538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE  596 (636)
Q Consensus       538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~  596 (636)
                      +++.+|++...|.+ ..+.+.++.++++|.+++.|++.....+.  ..+|..+.+|..+
T Consensus       101 ~~Dv~I~iS~SG~t-~~~i~~~~~ak~~Ga~vI~IT~~~~s~La--~~aD~~l~~~~~~  156 (177)
T cd05006         101 PGDVLIGISTSGNS-PNVLKALEAAKERGMKTIALTGRDGGKLL--ELADIEIHVPSDD  156 (177)
T ss_pred             CCCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCCchh--hhCCEEEEeCCCC
Confidence            78888888876654 55677889999999999999987765443  2367788888543

Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.51  E-value=0.00049  Score=78.65  Aligned_cols=198  Identities=15%  Similarity=0.257  Sum_probs=112.4

Q ss_pred             CcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH--
Q 006659           62 PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE--  139 (636)
Q Consensus        62 ~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~--  139 (636)
                      ..-|||+.-.+..|- .+|.++.+      ..+.++.+|-|.|++||..+++..+||..       .+.|||+|...+  
T Consensus       257 ~TIVYKGql~~~ql~-~yY~DL~N------~~y~S~~AlvHsRFSTNTfPsWdrAQPmR-------~l~HNGEINTlrGN  322 (2142)
T KOG0399|consen  257 QTIVYKGQLRPEQLY-NYYPDLTN------AEYKSHFALVHSRFSTNTFPSWDRAQPMR-------FLAHNGEINTLRGN  322 (2142)
T ss_pred             ceEEEecccCHHHHh-hhcccccc------hhhcccceeeeeccccCCCCCccccccch-------hhhccCceeeeccc
Confidence            578899988888776 46666543      34679999999999999999999999975       579999997442  


Q ss_pred             ----HHHHHHHhCC---------Ccc--ccCCHhhHHHHHHHHHHhhccc----------------cC--CCCCCCHHHH
Q 006659          140 ----VLKETLIRHG---------FTF--ESETDTEVIPKLAKFVFDKANE----------------EE--GDQPVTFSQV  186 (636)
Q Consensus       140 ----~l~~~l~~~g---------~~~--~~~tDsE~i~~l~~~~~~~~~~----------------~~--~~~~~~~~~~  186 (636)
                          .-|+-+.+..         +++  .+.|||-.+-..++...+..+.                .+  .++...+.++
T Consensus       323 ~NwMraREg~mks~~~~~e~~kl~Pive~~~SDSa~lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~  402 (2142)
T KOG0399|consen  323 KNWMRAREGVMKSAVFKDELNKLLPIVEEGGSDSAALDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDW  402 (2142)
T ss_pred             hhHHHHHHHhhhcchhhhhhhhhcccccCCCCchhhhhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHH
Confidence                2222221111         112  4679998877777655432110                00  0011123333


Q ss_pred             HHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc------------Ccccccccc--------eeeccCCCe--
Q 006659          187 VVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD------------GAVSILKFD--------NAKGRNGGT--  244 (636)
Q Consensus       187 ~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~------------~~~~~~~~~--------~~~~~~g~~--  244 (636)
                      ..-.++-.+|+.=+.+.|   +..+-+.=|+    -|.+|            .+++....+        .+.|+||-|  
T Consensus       403 ~a~~MEpWDGPALl~FsD---Gry~GA~LDR----NGLRP~Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~Mll  475 (2142)
T KOG0399|consen  403 AACQMEPWDGPALLTFSD---GRYCGAILDR----NGLRPARYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLL  475 (2142)
T ss_pred             HhhcCCCCCCceEEEecC---Cceeeeeecc----CCCcceeeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEE
Confidence            333444556665555555   3444333344    34444            122333333        338999998  


Q ss_pred             ee-CCCcccceeeeeccchhhhhcCChHHHHHHHHHhcHH
Q 006659          245 YA-RPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPE  283 (636)
Q Consensus       245 ~~-~~~~~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~  283 (636)
                      ++ ..|+..   .--+...+.....+|.+|..+++.....
T Consensus       476 VD~~~g~v~---dd~elK~ris~~~py~~wl~~~~~~l~~  512 (2142)
T KOG0399|consen  476 VDTELGQVV---DDKELKKRISSRRPYGSWLSENIILLKP  512 (2142)
T ss_pred             EEccCCeEE---ecHHHHHHHhhcCcHHHHHHHhhhhhhh
Confidence            22 234411   1111122223356888888887765433

>TIGR02815 agaS_fam putative sugar isomerase, AgaS family

Probab=97.47  E-value=0.0025  Score=68.08  Aligned_cols=118  Identities=9%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             HHhhhHHHHHH---HHhc-hHHHHHHHHHh--cCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccc
Q 006659          462 GLCDLPNKVRE---VLKL-DQEMKVLAKQL--IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLAL  535 (636)
Q Consensus       462 ~l~~l~~~~~~---~~~~-~~~~~~~a~~l--~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~  535 (636)
                      ++.+-|+.++.   .++. .+.++++++.+  .+.++++++|+|.+|-.|+-++--|.+.+.+++......||.|.+-..
T Consensus         8 EI~eqP~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~~~~~e~~~~~~~~   87 (372)
T TIGR02815         8 EIRQQPALWRRLLTIIQALRPALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVSAVPTTDLVSNPRQY   87 (372)
T ss_pred             HHHHChHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEEEEeCcccccccccc
Confidence            34444554443   2222 45566666654  456799999999999999999988999999999999999988766555


Q ss_pred             cc--CCCCeEEEEeCCcchHHHHHHHHHHHhc--CCeEEEEecCCCCcC
Q 006659          536 VD--ENLPILVIATRDACFSKQQSVIQQLHAR--KGRLIVMCSKGDAAS  580 (636)
Q Consensus       536 ~~--~~~~vi~l~~~~~~~~~~~~~~~~~~~~--g~~v~vi~~~~~~~~  580 (636)
                      .+  +++.+|.+.-.|.+.+ +.+.++.+++.  |.+++.|++..+..+
T Consensus        88 ~~~~~~~lvi~iSqSGeT~e-tv~a~~~ak~~~~g~~~i~it~~~~s~l  135 (372)
T TIGR02815        88 LDPTRPTLLVSFARSGNSPE-SVAAVELADQLLPECYHLVLTCNEEGAL  135 (372)
T ss_pred             cCCCCCeEEEEEeCCcCcHH-HHHHHHHHHHhCCCCcEEEEEcCCCCHH
Confidence            43  3566666665665544 55677788877  789999999876544

Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.45  E-value=0.0013  Score=66.89  Aligned_cols=131  Identities=15%  Similarity=0.140  Sum_probs=92.8

Q ss_pred             eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659          492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV  571 (636)
Q Consensus       492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v  571 (636)
                      ++++.|.|.++.+|.+.+.||.. ...++..++..+..+-....+++++.++++...|.+ ..+.+.++.++++|.+++.
T Consensus         2 rI~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-~~~~~~~~~a~~~g~~ii~   79 (268)
T TIGR00393         2 KLVIVGIGKSGLIGKKIVATFAS-TGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGES-LELLNLIPHLKRLSHKIIA   79 (268)
T ss_pred             cEEEEecChHHHHHHHHHHHHHh-cCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCC-HHHHHHHHHHHHcCCcEEE
Confidence            68999999999999999999886 455666665555444333457788888888876654 5567788999999999999


Q ss_pred             EecCCCCcCCCCCCcceEEEcCCCC-------cchhhHH-HHHHHHHHHHHHHHHcCCCCCCC
Q 006659          572 MCSKGDAASIFPGGSCRVIEVPQVE-------DCLQPVI-NIVPLQLLAYHLTVLRGYNVDQP  626 (636)
Q Consensus       572 i~~~~~~~~~~~~~~~~~~~~p~~~-------~~~~~~~-~~v~~q~la~~lA~~~G~~pd~p  626 (636)
                      |++.....+..  .+|..+.++...       ..+.+.. .+..+++|...++..+|..+.+.
T Consensus        80 iT~~~~s~l~~--~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~  140 (268)
T TIGR00393        80 FTGSPNSSLAR--AADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRARNFSQEDF  140 (268)
T ss_pred             EECCCCCcccc--cCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            99987665432  356777775321       1233333 33345888888898888876543

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd05010 SIS_AgaS_like AgaS-like protein

Probab=97.42  E-value=0.0019  Score=59.58  Aligned_cols=125  Identities=14%  Similarity=0.098  Sum_probs=84.1

Q ss_pred             EEEEeechhHHHHHHHHHHHHHhcC--CcEEEeeccchhcccC-CCCCCcEEEEEcCCCCCHH--HHHHHHHHHHc--CC
Q 006659          322 IVFIGCGTSYNAALAARPILEELSD--LPVTMEIASDLVDRQA-PIYREDTAVFVSQSGETAD--TLQALEYASEN--GA  394 (636)
Q Consensus       322 I~i~G~G~S~~aa~~~~~~~~~~~~--~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e--~i~al~~ak~~--g~  394 (636)
                      |+++|.|.++..|+.++-++..+.-  +.+..+.+.||.|-+. .++++..+|++...+.+.+  ..++++..+++  |+
T Consensus         1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~   80 (151)
T cd05010           1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA   80 (151)
T ss_pred             CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence            6899999999999999999888754  6888888899988764 4678888888887777643  56899999997  89


Q ss_pred             eEEEEEcCCCCccccccCeeEEc-CCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          395 LCVGITNTVGSAIARKTHCGVHI-NAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       395 ~vi~IT~~~~s~La~~ad~~l~~-~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      ++++|+...+......+++.+.. +...+     .-+-...+..+++|+..++..++.
T Consensus        81 ~vi~i~~~~~~~~~~~~~~~l~~~~~~~~-----~l~p~~~iip~Qlla~~~A~~~G~  133 (151)
T cd05010          81 RVIAISPESDAGIEDNSHYYLPGSRDLDD-----VYLAFPYILYAQLFALFNSIALGL  133 (151)
T ss_pred             eEEEEEcCCccccccccceeecccCCccc-----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999875322222223332221 11111     111222344556777777665543

AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.

>PRK00414 gmhA phosphoheptose isomerase; Reviewed

Probab=97.41  E-value=0.0044  Score=59.65  Aligned_cols=133  Identities=18%  Similarity=0.175  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccccccccccc---------------cc-cc
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILAGEMKHGP---------------LA-LV  536 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~~Ef~HGp---------------~~-~~  536 (636)
                      +.++.+++.+...+++++.|.|.++.+|...+..+.     ....+++...  .+..|..               .. ..
T Consensus        32 ~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~--~d~~~~~~~~~d~~~~~~~~~~~~~~~  109 (192)
T PRK00414         32 RAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI--SDVSHLSCVSNDFGYDYVFSRYVEAVG  109 (192)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec--CcHHHHhhhhccCCHHHHHHHHHHHhC
Confidence            444555666667799999999999999999986553     2234555444  2332321               11 24


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc-hhhHHHHHHHHHHHHHH
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC-LQPVINIVPLQLLAYHL  615 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~v~~q~la~~l  615 (636)
                      ++++.+|++...|.+ ..+.+.++.++++|.+++.|+...+..+.  ..+|..+.+|..... -..-......|+|+..+
T Consensus       110 ~~~Dv~I~iS~SG~t-~~~i~~~~~ak~~g~~iI~iT~~~~s~l~--~~ad~~l~~~~~~~~~~~~~~~~~~~~~l~~~v  186 (192)
T PRK00414        110 REGDVLLGISTSGNS-GNIIKAIEAARAKGMKVITLTGKDGGKMA--GLADIEIRVPHFGYADRIQEIHIKVIHILIQLI  186 (192)
T ss_pred             CCCCEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEEEeCCCCChhH--HhCCEEEEeCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            678888888877655 55667888999999999999998765442  135778888863322 11112223455555443

>PRK02947 hypothetical protein; Provisional

Probab=97.29  E-value=0.011  Score=59.42  Aligned_cols=99  Identities=15%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcc-----ccccc-------cccccccccc------cccccC
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVAL-----MHSEG-------ILAGEMKHGP------LALVDE  538 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~-----~~a~~-------~~~~Ef~HGp------~~~~~~  538 (636)
                      ++.++.+++.+...++++++|.|.+..+|.++..|+.-...     .++..       ...-|..+|.      ...+++
T Consensus        27 ~~aa~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (246)
T PRK02947         27 EKAADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIRP  106 (246)
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCCC
Confidence            34456677778889999999999999999998887631111     11110       0111222232      223567


Q ss_pred             CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCC
Q 006659          539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKG  576 (636)
Q Consensus       539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~  576 (636)
                      +..+|+|...|.+ ..+.++++.++++|.+++.||...
T Consensus       107 ~Dv~i~iS~sG~t-~~~i~~~~~a~~~g~~vI~iT~~~  143 (246)
T PRK02947        107 GDVLIVVSNSGRN-PVPIEMALEAKERGAKVIAVTSLA  143 (246)
T ss_pred             CCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEcCCc
Confidence            8888888876655 456778999999999999999875

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=97.28  E-value=0.004  Score=71.48  Aligned_cols=138  Identities=13%  Similarity=0.170  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      .+.+.++++.+.+.++++++|.|.++.+|.+...++... .+++..+.-..+..-....++++..+|+|...+.+.+ +.
T Consensus       455 ~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~l-g~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e-~i  532 (638)
T PRK14101        455 FEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRF-GIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPE-LL  532 (638)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcC-CceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHH-HH
Confidence            466788888999999999999999999999999998764 5555544322222212234678888888876665544 77


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC--cc----hhhHHHHHHHHHHHHHHHHHc
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE--DC----LQPVINIVPLQLLAYHLTVLR  619 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~--~~----~~~~~~~v~~q~la~~lA~~~  619 (636)
                      ++++.++++|.+++.||.. ...+.  ..+|.++.++...  ..    .+-+..+..++.|...++..+
T Consensus       533 ~~~~~Ak~~Ga~vIaIT~~-~spLa--~~aD~~L~~~~~~~~~s~~~~~s~~~~l~lid~L~~~l~~~~  598 (638)
T PRK14101        533 RVLDVAMQAGAKVIAITSS-NTPLA--KRATVALETDHIEMRESQLSMISRILHLVMIDILAVGVAIRR  598 (638)
T ss_pred             HHHHHHHHCCCeEEEEcCC-CChhH--hhCCEEEEcCCccchhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999999999999985 33332  1356667665321  11    222233445677777777766

>PRK14097 pgi glucose-6-phosphate isomerase; Provisional

Probab=97.16  E-value=0.0048  Score=67.08  Aligned_cols=112  Identities=22%  Similarity=0.199  Sum_probs=69.9

Q ss_pred             chHHHHHHHc-CCCeEEEEeechhHHHHHHHHHHHHHhc----------CCcE-EE---eeccchhcccCCC-CCCcEEE
Q 006659          308 GLKDHLKTIR-RSRRIVFIGCGTSYNAALAARPILEELS----------DLPV-TM---EIASDLVDRQAPI-YREDTAV  371 (636)
Q Consensus       308 ~l~~~~~~l~-~~~~I~i~G~G~S~~aa~~~~~~~~~~~----------~~~~-~~---~~~~e~~~~~~~~-~~~dlvI  371 (636)
                      .++++++.++ ..+.|+++|+|+|+..+..+...+....          +..+ .+   .++..+......+ .+++++|
T Consensus        61 ~i~~~~~~~~~~~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~~l~~~~tl~i  140 (448)
T PRK14097         61 RIKKAAEKIKSDSDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLEYLKDKDFSIN  140 (448)
T ss_pred             HHHHHHHHHhcCCCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHhhCCCCcEEEE
Confidence            3444555554 3589999999999888877777664310          1222 12   2222222222222 3688999


Q ss_pred             EEcCCCCCHHHHHHHHHHHH-----cCC-----eEEEEEcCCCCccccccC----eeEEcCC
Q 006659          372 FVSQSGETADTLQALEYASE-----NGA-----LCVGITNTVGSAIARKTH----CGVHINA  419 (636)
Q Consensus       372 ~iS~SG~t~e~i~al~~ak~-----~g~-----~vi~IT~~~~s~La~~ad----~~l~~~~  419 (636)
                      ++|.||.|.||....+.+++     .|.     .+++||+.....|.+.|+    .++.++.
T Consensus       141 ViSKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip~  202 (448)
T PRK14097        141 VISKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYETFVIPD  202 (448)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcCEEeCCC
Confidence            99999999999988876552     131     377787765556888777    3555543

>TIGR00441 gmhA phosphoheptose isomerase

Probab=97.13  E-value=0.0026  Score=58.92  Aligned_cols=113  Identities=17%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             HHHHHHhcCCCeEEEEeCCCCHHHHHHHHH------HHHHhccccccccc-cc--------ccc-cccc-----ccccCC
Q 006659          481 KVLAKQLIAEQSLLVFGRGYNYATALEGAL------KVKEVALMHSEGIL-AG--------EMK-HGPL-----ALVDEN  539 (636)
Q Consensus       481 ~~~a~~l~~~~~~~~lG~G~~~~~A~e~al------Kl~E~~~~~a~~~~-~~--------Ef~-HGp~-----~~~~~~  539 (636)
                      +++++.+...++++++|.|.++.+|..++.      |+. ...+++.... ..        ++. ...+     ...+++
T Consensus         2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   80 (154)
T TIGR00441         2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYREN-RPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKG   80 (154)
T ss_pred             hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccC-CCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCC
Confidence            356777889999999999999999999864      333 3355555443 10        100 0111     124677


Q ss_pred             CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc
Q 006659          540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED  597 (636)
Q Consensus       540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~  597 (636)
                      +.+|++...|.+ ..+.+.++.++++|.+++.|+......+.  ..+|..+.+|..++
T Consensus        81 D~~i~iS~sG~t-~~~~~~~~~a~~~g~~ii~iT~~~~s~l~--~~ad~~l~~~~~~~  135 (154)
T TIGR00441        81 DVLLGISTSGNS-KNVLKAIEAAKDKGMKTITLAGKDGGKMA--GLADIELRVPHFYT  135 (154)
T ss_pred             CEEEEEcCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCCchh--hhCCEEEEeCCCCc
Confidence            888888776654 56678889999999999999987765443  23577888886543

Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=97.06  E-value=0.013  Score=60.44  Aligned_cols=152  Identities=14%  Similarity=0.070  Sum_probs=88.7

Q ss_pred             HHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHH-HHHHHHHHHhccc----cc---ccc----ccccccc---
Q 006659          467 PNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATA-LEGALKVKEVALM----HS---EGI----LAGEMKH---  530 (636)
Q Consensus       467 ~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A-~e~alKl~E~~~~----~a---~~~----~~~Ef~H---  530 (636)
                      ++.+...++. .+.++.+++.+....+++++|.|.+.-+| ..+..++--...-    +.   -+.    ..-|...   
T Consensus        38 ~~av~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~  117 (299)
T PRK05441         38 ALAVEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDA  117 (299)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChH
Confidence            3333333332 44466777888899999999999988777 4443332111110    00   000    0011111   


Q ss_pred             ----cccc--cccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch-----
Q 006659          531 ----GPLA--LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL-----  599 (636)
Q Consensus       531 ----Gp~~--~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~-----  599 (636)
                          ..+.  .++++..+|++..+|.+ ..+...++.++++|.+++.|++..+..+..  ..|..+.++..+|.+     
T Consensus       118 ~~~~~~l~~~~l~~~DvvI~IS~SG~T-~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~--~aD~~I~~~~g~E~~~~st~  194 (299)
T PRK05441        118 ELGAADLKAINLTAKDVVVGIAASGRT-PYVIGALEYARERGALTIGISCNPGSPLSK--EADIAIEVVVGPEVLTGSTR  194 (299)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEEEECCCCChhhH--hCCEEEEcCCCCcccccccc
Confidence                1221  25678888888776665 447788899999999999999877654421  356667666333321     


Q ss_pred             --hhHHHHHHHHHHHHHHHHHcCC
Q 006659          600 --QPVINIVPLQLLAYHLTVLRGY  621 (636)
Q Consensus       600 --~~~~~~v~~q~la~~lA~~~G~  621 (636)
                        +.......+.+++..+....|.
T Consensus       195 ~~s~taqk~iLn~lst~~~~~~gk  218 (299)
T PRK05441        195 MKAGTAQKLVLNMISTGVMIRLGK  218 (299)
T ss_pred             ccchhHHHHHHHHHHHHHHHHccH
Confidence              2223344557777777766665

>PLN02649 glucose-6-phosphate isomerase

Probab=97.01  E-value=0.028  Score=62.50  Aligned_cols=93  Identities=20%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhc-------CCcEEEee---ccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHH
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELS-------DLPVTMEI---ASDLVDRQAPIY-REDTAVFVSQSGETADTLQAL  386 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~-------~~~~~~~~---~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al  386 (636)
                      ..+.|+.+|+|+|+-....+...+....       +..+.+.+   +..+......++ +.+++|++|.||.|.||+..+
T Consensus       146 ~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p~~TL~iViSKSgtT~ET~~n~  225 (560)
T PLN02649        146 RFTNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDPETTLVVVVSKTFTTAETMLNA  225 (560)
T ss_pred             ccceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHH
Confidence            4688999999999887777777665432       11333322   222322222233 578999999999999999888


Q ss_pred             HHHHH----c-C-----CeEEEEEcCCCCccccccC
Q 006659          387 EYASE----N-G-----ALCVGITNTVGSAIARKTH  412 (636)
Q Consensus       387 ~~ak~----~-g-----~~vi~IT~~~~s~La~~ad  412 (636)
                      +.+++    + |     -..|+||.  ++++.+.+.
T Consensus       226 ~~~r~~l~~~~g~~~~~~h~vavT~--~~~l~~~a~  259 (560)
T PLN02649        226 RTVRKWLRDALGGLAVAKHMVAVST--NLLLVNKFG  259 (560)
T ss_pred             HHHHHHHHhhcccccccceEEEECC--ChHHHHHhC
Confidence            77663    2 2     24788884  556777765

>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions

Probab=96.97  E-value=0.0043  Score=54.79  Aligned_cols=100  Identities=13%  Similarity=0.148  Sum_probs=68.2

Q ss_pred             eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEE
Q 006659          492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV  571 (636)
Q Consensus       492 ~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~v  571 (636)
                      +++++|.|.++.+|.....++.....+++......++.+    ..++++.+|++...|.+ ..+.+.++.++++|.+++.
T Consensus         1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~dl~I~iS~SG~t-~e~i~~~~~a~~~g~~iI~   75 (119)
T cd05017           1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLPA----FVDRKTLVIAVSYSGNT-EETLSAVEQAKERGAKIVA   75 (119)
T ss_pred             CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccCcC----CCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCEEEE
Confidence            478999999999999888888886666766655433321    45677888888766654 5566788889999999999


Q ss_pred             EecCCCCcCCCCCCcceEEEcCCCC
Q 006659          572 MCSKGDAASIFPGGSCRVIEVPQVE  596 (636)
Q Consensus       572 i~~~~~~~~~~~~~~~~~~~~p~~~  596 (636)
                      |+..+.-....+..+...+.+|...
T Consensus        76 IT~~~~l~~~~~~~~~~~~~~p~~~  100 (119)
T cd05017          76 ITSGGKLLEMAREHGVPVIIIPKGL  100 (119)
T ss_pred             EeCCchHHHHHHHcCCcEEECCCCC
Confidence            9975421100011123568888643

These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.

>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed

Probab=96.91  E-value=0.024  Score=62.88  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=62.5

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEeecc---chhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEIAS---DLVDRQAPIY-REDTAVFVSQSGETADTLQALEYASE  391 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~~~---e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~  391 (636)
                      ..+.|+++|+|+|+-....+...+....  +..+.+.+..   .+......++ +.+++|++|-||.|.||...++.+++
T Consensus       144 ~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL~iViSKSgtT~ET~~n~~~~~~  223 (548)
T PRK00179        144 AITDVVNIGIGGSDLGPVMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPETTLFIVASKTFTTQETLTNAHSARD  223 (548)
T ss_pred             ccCeEEEECCCcchHHHHHHHHHhhhhccCCCceEEEeCCCHHHHHHHHhcCCcccEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3689999999999888888777665432  2233332222   2222222233 67899999999999999966665442


Q ss_pred             ----c-------CCeEEEEEcCCCCccccccC---eeEEcCC
Q 006659          392 ----N-------GALCVGITNTVGSAIARKTH---CGVHINA  419 (636)
Q Consensus       392 ----~-------g~~vi~IT~~~~s~La~~ad---~~l~~~~  419 (636)
                          +       +-..|+||.+ .+++++..-   .++.++.
T Consensus       224 ~l~~~~~~~~~~~~h~vaVT~~-~~~~~~~g~~~~~~F~~~d  264 (548)
T PRK00179        224 WFLAAGGDEAAVAKHFVAVSTN-AEAVAEFGIDPDNMFGFWD  264 (548)
T ss_pred             HHHHhcCccccccceEEEEcCC-cHHHHHcCCchhcEEECCC
Confidence                2       1237788886 444554322   2555543

>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment

Probab=96.73  E-value=0.017  Score=63.53  Aligned_cols=187  Identities=16%  Similarity=0.072  Sum_probs=97.5

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhcCC--cEEEeeccc---hhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELSDL--PVTMEIASD---LVDRQAPIY-REDTAVFVSQSGETADTLQALEYASE  391 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~--~~~~~~~~e---~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~  391 (636)
                      ..+.|+++|+|+|+-....+...+......  .+.+.+..+   +......++ +++++|++|.||.|.||+..++.+++
T Consensus        95 ~~~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n~~~~~~  174 (486)
T PF00342_consen   95 PITDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTIETLANFRIARE  174 (486)
T ss_dssp             B-SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHHHHHHHH
T ss_pred             ceeEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHHHHHHHH
Confidence            357899999999998888887777665432  344433322   222233444 46899999999999999988887765


Q ss_pred             ----c-------CCeEEEEEcCCCCcccccc--CeeEEcCCC--CcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHH
Q 006659          392 ----N-------GALCVGITNTVGSAIARKT--HCGVHINAG--AEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARR  456 (636)
Q Consensus       392 ----~-------g~~vi~IT~~~~s~La~~a--d~~l~~~~~--~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~  456 (636)
                          +       +-..|+||++....+...+  +.++.++..  -.-++-+..++.      ..++..+        ..+
T Consensus       175 ~l~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~VGGRfSv~SaVGlp------~ala~G~--------~~~  240 (486)
T PF00342_consen  175 WLEKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDWVGGRFSVLSAVGLP------LALAGGF--------IDF  240 (486)
T ss_dssp             HHHHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TTS-GGGTTTSGGGHH------HHHHHHH--------HHH
T ss_pred             HHHhhcCccccccceEEEeCCCchHHHHHHHHHhcceeccccccccccCCCCCchH------HHHHcCh--------hhH
Confidence                2       2469999988555443333  255655442  111221222211      1112111        123


Q ss_pred             HHHHHHHhhhHHHHHHHHhchHH------HHHHHHHhcCCCeEEEEeC-CCCHHHHHHHHHHHHHhccc
Q 006659          457 EAIIDGLCDLPNKVREVLKLDQE------MKVLAKQLIAEQSLLVFGR-GYNYATALEGALKVKEVALM  518 (636)
Q Consensus       457 ~~~~~~l~~l~~~~~~~~~~~~~------~~~~a~~l~~~~~~~~lG~-G~~~~~A~e~alKl~E~~~~  518 (636)
                      +++++..+.+.+.+...--..+.      +.-+.....+....+++.. -.....+....+-++|..+.
T Consensus       241 ~~lL~GA~~md~~f~~~~~~~N~p~~~All~~~~~~~~g~~~~~i~~Y~~~L~~l~~w~qQL~mESlGK  309 (486)
T PF00342_consen  241 EELLAGARAMDEHFRSAPLEKNPPVLYALLRVWNSNFLGYNIEVILPYSPRLRRLPAWLQQLWMESLGK  309 (486)
T ss_dssp             HHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTST-SEEEEEESSGGGTTHHHHHHHHHHHHHSE
T ss_pred             HHHHHHHHHHHHHhcCCChhhCHHHHHHHHHHHHHhhhccchhccccCChHHHHHHHHHHHhcccccch
Confidence            33333333333333221101111      1122222335555555554 44567777888889999876

; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=96.53  E-value=0.028  Score=50.98  Aligned_cols=97  Identities=19%  Similarity=0.187  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccc--------------cccccc----ccc--c
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAG--------------EMKHGP----LAL--V  536 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~--------------Ef~HGp----~~~--~  536 (636)
                      +..++.+++.+..-.+++++|.|.+...|.+.+..+.....+.......-              |+..|.    ...  +
T Consensus        22 ~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (138)
T PF13580_consen   22 EKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDI  101 (138)
T ss_dssp             HHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCC
Confidence            34556677778888999999999999999999998887664443332111              111111    122  5


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEec
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCS  574 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~  574 (636)
                      .++..+|+|...|. .....+.++..+++|.+||.|+.
T Consensus       102 ~~gDvli~iS~SG~-s~~vi~a~~~Ak~~G~~vIalTg  138 (138)
T PF13580_consen  102 RPGDVLIVISNSGN-SPNVIEAAEEAKERGMKVIALTG  138 (138)
T ss_dssp             -TT-EEEEEESSS--SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             CCCCEEEEECCCCC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence            67888888887664 47778899999999999999874

...

>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated

Probab=96.47  E-value=0.038  Score=58.25  Aligned_cols=128  Identities=16%  Similarity=0.153  Sum_probs=82.9

Q ss_pred             HHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccC
Q 006659          459 IIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDE  538 (636)
Q Consensus       459 ~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~  538 (636)
                      +.+.+..+|+.+++..+.... ..+...+...++++++|.|.++.+|.....++.....+++.....   .|.|. .+++
T Consensus         4 m~~~~~~~~~q~~~a~~~~~~-~~~~~~~~~~~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~   78 (337)
T PRK08674          4 MLEEYLNWPEQFEEALEIAIS-LDLEEDLEKIDNIVISGMGGSGIGGDLLRILLFDELKVPVFVNRD---YTLPA-FVDE   78 (337)
T ss_pred             HHHHHHhHHHHHHHHHHhhhc-cchhhhhcCCCEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEeCc---cchhh-cCCC
Confidence            445667788888887754111 223334557889999999999888887777765556666555322   22232 3477


Q ss_pred             CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCC--CCCcceEEEcCC
Q 006659          539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIF--PGGSCRVIEVPQ  594 (636)
Q Consensus       539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~--~~~~~~~~~~p~  594 (636)
                      ++.+|++...|.+ ..+.+.++.++++|.++++||+.+.  +..  +..+...+.+|.
T Consensus        79 ~dlvI~iS~SG~T-~e~~~a~~~a~~~ga~vIaIT~~~~--L~~~a~~~~~~~i~ip~  133 (337)
T PRK08674         79 KTLVIAVSYSGNT-EETLSAVEQALKRGAKIIAITSGGK--LKEMAKEHGLPVIIVPG  133 (337)
T ss_pred             CcEEEEEcCCCCC-HHHHHHHHHHHHCCCeEEEECCCch--HHHHHHhcCCeEEEeCC
Confidence            7888877765544 5566788888999999999997542  210  011345788884

>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase

Probab=96.43  E-value=0.17  Score=51.09  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=86.5

Q ss_pred             HhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHH-HHHHHHHHhccccc--------cccc----cccc
Q 006659          463 LCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATAL-EGALKVKEVALMHS--------EGIL----AGEM  528 (636)
Q Consensus       463 l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~-e~alKl~E~~~~~a--------~~~~----~~Ef  528 (636)
                      -..++..++..++. .+.++.+++.+....+++++|.|.+--+|. .++-++. ....+.        -+..    .-|.
T Consensus        21 ~~~~~~av~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~-tfg~~~~~v~~~iagg~~a~~~a~~~   99 (257)
T cd05007          21 DKKVAAAVEAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPP-TFGTPPERVVGLIAGGEPALTRAVEG   99 (257)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccc-cccCCcccceEEEeCCHHHHHhhccc
Confidence            33344444444443 455677788888899999999998765553 2222221 111100        0000    0011


Q ss_pred             cccc-------c--ccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch
Q 006659          529 KHGP-------L--ALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL  599 (636)
Q Consensus       529 ~HGp-------~--~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~  599 (636)
                      .++.       +  ..++++..+|+|...|.+ ..+...++.++++|.+++.|++.....+..  ..|..+.++..++.+
T Consensus       100 ~edd~~~~~~~l~a~~l~~~DvvI~IS~SG~T-~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~--~aD~~I~~~~g~E~~  176 (257)
T cd05007         100 AEDDEEAGAADLQAINLTERDVVIGIAASGRT-PYVLGALRYARARGALTIGIACNPGSPLLQ--LADIAIALITGPEVV  176 (257)
T ss_pred             cCChHHHHHHHHHHcCCCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEEEECCCCChhHH--hCCEEEEcCCCCccc
Confidence            1111       1  123577888888776665 447788899999999999999887654421  246667665333321


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHcC
Q 006659          600 -------QPVINIVPLQLLAYHLTVLRG  620 (636)
Q Consensus       600 -------~~~~~~v~~q~la~~lA~~~G  620 (636)
                             +.......+.+++..+....|
T Consensus       177 ~~st~~~s~~aqk~vLn~L~t~~~~~~g  204 (257)
T cd05007         177 AGSTRLKAGTAQKLALNMLSTAVMIRLG  204 (257)
T ss_pred             cCccccccHHHHHHHHHHHHHHHHHHcc
Confidence                   123334445666666666555

Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.

>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales

Probab=96.21  E-value=0.033  Score=51.35  Aligned_cols=106  Identities=15%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Q 006659          310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYA  389 (636)
Q Consensus       310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~a  389 (636)
                      +-+++.+-.-.+||+.|.|---.....+-+--++   ++-...-..+ ......+++-|-|+.+|..-+..+.++.++++
T Consensus        29 RlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~---l~~~k~l~~~-~~~~~~lt~~DRVllfs~~~~~~e~~~~a~~L  104 (172)
T PF10740_consen   29 RLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEP---LPSAKRLSED-LENFDELTETDRVLLFSPFSTDEEAVALAKQL  104 (172)
T ss_dssp             HHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT-----TTEEE--TT---------TT-EEEEEES-S--HHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCC---CchhhcCccc-ccccccccccceEEEEeCCCCCHHHHHHHHHH
Confidence            3344556677999999999775332222221111   1111111111 11122467888999999998899999999999


Q ss_pred             HHcCCeEEEEE-c-CCCCccccccCeeEEcCC
Q 006659          390 SENGALCVGIT-N-TVGSAIARKTHCGVHINA  419 (636)
Q Consensus       390 k~~g~~vi~IT-~-~~~s~La~~ad~~l~~~~  419 (636)
                      .++|+++|+|+ + .....+..++|+.|.+..
T Consensus       105 ~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~  136 (172)
T PF10740_consen  105 IEQGIPFVGVSPNKPDEEDLEDLADVHIDLKL  136 (172)
T ss_dssp             HHHT--EEEEE-SS---TTGGG-SSS-EE---
T ss_pred             HHCCCCEEEEEecCCCCCchhhhhhheeeccc
Confidence            99999999999 2 335568999999888755

Their function is not known. ; PDB: 3JX9_A.

>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=96.20  E-value=0.18  Score=51.96  Aligned_cols=142  Identities=11%  Similarity=0.015  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHH-HHHHHHHHhccccccc-------------------ccccccccccc--c
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATAL-EGALKVKEVALMHSEG-------------------ILAGEMKHGPL--A  534 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~-e~alKl~E~~~~~a~~-------------------~~~~Ef~HGp~--~  534 (636)
                      .+.++.+++.+....+++++|.|.+..+|. ++...+.-.. .+...                   ++.++.....+  .
T Consensus        45 ~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~-~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~  123 (296)
T PRK12570         45 AQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFS-VSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAI  123 (296)
T ss_pred             HHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhc-CCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHc
Confidence            445566777888889999999998866643 3322221111 11110                   00011111111  1


Q ss_pred             cccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc-------hhhHHHHHH
Q 006659          535 LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC-------LQPVINIVP  607 (636)
Q Consensus       535 ~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~~~~~~v~  607 (636)
                      .++++..+|++...|.+. .+...++.++++|.+++.|++.....+..  ..|..+.+...++.       -+.+.....
T Consensus       124 ~l~~~DvvI~IS~SG~T~-~vi~al~~Ak~~Ga~~IaIT~~~~s~La~--~aD~~I~~~~g~E~~~~st~~~s~taqk~v  200 (296)
T PRK12570        124 GLTADDVVVGIAASGRTP-YVIGALEYAKQIGATTIALSCNPDSPIAK--IADIAISPVVGPEVLTGSTRLKSGTAQKMV  200 (296)
T ss_pred             CCCCCCEEEEEeCCCCCH-HHHHHHHHHHHCCCeEEEEECCCCChhHH--hCCEEEeeCcCCccccccchHHHHHHHHHH
Confidence            245788888888777654 47788899999999999999887654421  24555554322222       123344556


Q ss_pred             HHHHHHHHHHHcCCC
Q 006659          608 LQLLAYHLTVLRGYN  622 (636)
Q Consensus       608 ~q~la~~lA~~~G~~  622 (636)
                      +.+|+..+....|.-
T Consensus       201 Ld~L~t~~~~r~Gk~  215 (296)
T PRK12570        201 LNMLSTASMIRLGKS  215 (296)
T ss_pred             HHHHHHHHHHhcchh
Confidence            788888887777753

>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase

Probab=95.91  E-value=0.095  Score=54.32  Aligned_cols=105  Identities=13%  Similarity=0.150  Sum_probs=68.9

Q ss_pred             HhcCCCeEEEEeCCCCHHHHHHHHHHHHHhc-cccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHh
Q 006659          486 QLIAEQSLLVFGRGYNYATALEGALKVKEVA-LMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHA  564 (636)
Q Consensus       486 ~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~-~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~  564 (636)
                      .+...++++++|.|.++.+|.....++.... .+++...  .++ |-| ..+++++.+|++..+|.+.+ +...++.+++
T Consensus        17 ~~~~~~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~--~d~-~l~-~~~~~~dlvI~iS~SG~t~e-~~~a~~~A~~   91 (308)
T TIGR02128        17 ILKIYDEIVICGMGGSGIAGRIISILLLEKSFQGPVFVV--KDY-RLP-RFVDGKTLLIAVSYSGNTEE-TLSAVEEAKK   91 (308)
T ss_pred             HHhcCCEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEE--cCc-ccc-ccCCCCeEEEEEcCCCCCHH-HHHHHHHHHH
Confidence            3344689999999999999998888888766 3565543  222 222 34567777777776665544 5567888888


Q ss_pred             cCCeEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659          565 RKGRLIVMCSKGDAASIFPGGSCRVIEVPQV  595 (636)
Q Consensus       565 ~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~  595 (636)
                      +|.++++|+..+.-.......++..+.+|..
T Consensus        92 ~g~~ii~iT~~g~L~~~a~~~~~~~i~vP~~  122 (308)
T TIGR02128        92 KGAKVIAITSGGRLEEMAKERGLDVIKIPKG  122 (308)
T ss_pred             cCCEEEEECCCcHHHHHHHhcCCeEEEcCCC
Confidence            9999999996442100000123567888864

This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.

>TIGR00274 N-acetylmuramic acid 6-phosphate etherase

Probab=95.70  E-value=0.43  Score=49.04  Aligned_cols=143  Identities=14%  Similarity=0.063  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHH-HHHHHHHHHhccccc------------------cccc-cccccccccc--
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATA-LEGALKVKEVALMHS------------------EGIL-AGEMKHGPLA--  534 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A-~e~alKl~E~~~~~a------------------~~~~-~~Ef~HGp~~--  534 (636)
                      .+.++.+++.+....+++++|.|.+--+| ++++-++--. ..++                  ++.+ ..+.-...+.  
T Consensus        44 ~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~-g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~  122 (291)
T TIGR00274        44 AAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTF-GVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNI  122 (291)
T ss_pred             HHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhc-CCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhc
Confidence            34456667778888999999999764443 3333222111 1111                  1111 1111112221  


Q ss_pred             cccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc------h-hhHHHHHH
Q 006659          535 LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC------L-QPVINIVP  607 (636)
Q Consensus       535 ~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~------~-~~~~~~v~  607 (636)
                      .++++..+|++...|.+ ..+...++.++++|.+++.|++........  ..|..+.++..+|.      + +.+.....
T Consensus       123 ~l~~~DvvI~IS~SG~T-~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~--~aD~~I~~~~g~E~~~~st~~~s~~aqk~i  199 (291)
T TIGR00274       123 HLTKNDVVVGIAASGRT-PYVIAGLQYARSLGALTISIACNPKSAASE--IADIAIETIVGPEILTGSSRLKAGTAQKMV  199 (291)
T ss_pred             CCCCCCEEEEEeCCCCc-HHHHHHHHHHHHCCCeEEEEECCCCChhHH--hCCEEEecCCCCccccccchhhHHHHHHHH
Confidence            35678888998887765 447788899999999999999876554321  24566665422222      1 23344556


Q ss_pred             HHHHHHHHHHHcCCCC
Q 006659          608 LQLLAYHLTVLRGYNV  623 (636)
Q Consensus       608 ~q~la~~lA~~~G~~p  623 (636)
                      +++|+..+....|.--
T Consensus       200 Ld~L~t~~~~~~gk~~  215 (291)
T TIGR00274       200 LNMLSTASMIKLGKVY  215 (291)
T ss_pred             HHHHHHHHHHhcchhh
Confidence            7888888888877543

This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.

>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit

Probab=95.47  E-value=0.43  Score=55.87  Aligned_cols=125  Identities=18%  Similarity=0.264  Sum_probs=68.4

Q ss_pred             CCcEEEEEc-CCCCC-HHHHHHHHHHHHcCCeEEEEEcCCCCc-----------------cccccCeeEEcCCCCccccc
Q 006659          366 REDTAVFVS-QSGET-ADTLQALEYASENGALCVGITNTVGSA-----------------IARKTHCGVHINAGAEIGVA  426 (636)
Q Consensus       366 ~~dlvI~iS-~SG~t-~e~i~al~~ak~~g~~vi~IT~~~~s~-----------------La~~ad~~l~~~~~~e~~~~  426 (636)
                      .-|++|++. ..+++ +.+...++.|+++|+++|+|-.....-                 -++.||..|.+..|.+.   
T Consensus       198 ~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD~---  274 (743)
T TIGR01701       198 HTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVRIGGDI---  274 (743)
T ss_pred             hCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCCCCcHH---
Confidence            356666664 44543 456677888999999999996643321                 16778888876554332   


Q ss_pred             chhhHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCCC-
Q 006659          427 STKAYTSQIVVMAMLALAIGGDT-----ISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAEQ-  491 (636)
Q Consensus       427 ~t~s~~~~~~~l~lL~~~~~~~~-----~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~~-  491 (636)
                              .+++.++-..+....     .-+.+.+++....++.+        ++.+.+.--. .+.++++|+.+...+ 
T Consensus       275 --------AL~~g~~~~li~~~~~~~~~~~D~~Fi~~~t~Gfe~l~~~v~~~t~e~~~~~tGv~~~~I~~~A~~~a~a~~  346 (743)
T TIGR01701       275 --------ALFNGVMKLLIEAEDAQPGSLIDHEFIANHTNGFDELRRHVLQLNWNDIERSSGLSQEEILEFAKLLANSRR  346 (743)
T ss_pred             --------HHHHHHHHHHHHCCCccccccccHHHHHHhcchHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHHhCCC
Confidence                    111112222222220     11233333333333322        2333332222 677889999887654 


Q ss_pred             eEEEEeCCCC
Q 006659          492 SLLVFGRGYN  501 (636)
Q Consensus       492 ~~~~lG~G~~  501 (636)
                      .+++.|.|..
T Consensus       347 ~~i~~g~G~~  356 (743)
T TIGR01701       347 VVFCWAMGLT  356 (743)
T ss_pred             EEEEECcccc
Confidence            5677788865

This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.

>PTZ00430 glucose-6-phosphate isomerase; Provisional

Probab=95.43  E-value=0.032  Score=61.85  Aligned_cols=86  Identities=16%  Similarity=0.199  Sum_probs=55.8

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhc-------CCcEEEe---eccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHH
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELS-------DLPVTME---IASDLVDRQAPIY-REDTAVFVSQSGETADTLQAL  386 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~-------~~~~~~~---~~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al  386 (636)
                      ..+.|+.+|+|+|+-....+...+....       +..+...   ++.++......++ +.+++|++|-||.|.||+..+
T Consensus       141 ~~~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ldp~~TLfiViSKSgtT~ETl~n~  220 (552)
T PTZ00430        141 KLKNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLDPEETLVVIISKTFTTAETMLNA  220 (552)
T ss_pred             eeceEEEEcCCccchHHHHHHHHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHH
Confidence            4678999999999887777776665431       1233332   2333322222233 578999999999999999666


Q ss_pred             HHHHH----c-C------CeEEEEEcCC
Q 006659          387 EYASE----N-G------ALCVGITNTV  403 (636)
Q Consensus       387 ~~ak~----~-g------~~vi~IT~~~  403 (636)
                      +.+++    + |      -..|+||++.
T Consensus       221 ~~~r~wl~~~~~~~~~~~~h~vavT~~~  248 (552)
T PTZ00430        221 KTVRQWLLDNIKSKEALSKHLCAVSTNL  248 (552)
T ss_pred             HHHHHHHHHhccccccccCeEEEEcCch
Confidence            65543    1 1      2478999854

>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site

Probab=95.29  E-value=0.37  Score=54.55  Aligned_cols=125  Identities=17%  Similarity=0.252  Sum_probs=67.2

Q ss_pred             CCcEEEEEcC-CCC-CHHHHHHHHHHHHcCCeEEEEEcCCCC----------------ccccccCeeEEcCCCCcccccc
Q 006659          366 REDTAVFVSQ-SGE-TADTLQALEYASENGALCVGITNTVGS----------------AIARKTHCGVHINAGAEIGVAS  427 (636)
Q Consensus       366 ~~dlvI~iS~-SG~-t~e~i~al~~ak~~g~~vi~IT~~~~s----------------~La~~ad~~l~~~~~~e~~~~~  427 (636)
                      .-|++|++.+ .+. .+.+...++.|+++|+++|+|-.....                ..++.||..|.+..|.+.    
T Consensus       163 ~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irPGtD~----  238 (574)
T cd02767         163 HTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGDI----  238 (574)
T ss_pred             cCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCCCcHH----
Confidence            4566666644 444 356677788999999999999775432                346778887766543332    


Q ss_pred             hhhHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHhhhH--------HHHHHHHhc-hHHHHHHHHHhcCCC-eE
Q 006659          428 TKAYTSQIVVMAMLALAIGGD----TISTQARREAIIDGLCDLP--------NKVREVLKL-DQEMKVLAKQLIAEQ-SL  493 (636)
Q Consensus       428 t~s~~~~~~~l~lL~~~~~~~----~~~~~~~~~~~~~~l~~l~--------~~~~~~~~~-~~~~~~~a~~l~~~~-~~  493 (636)
                             .+++.++-..+...    ..-+.+.+++....++.+.        +.+.+.--. .+.++++|+.+...+ .+
T Consensus       239 -------AL~~gl~k~li~~~~~~~~~~D~~Fi~~~t~Gfd~~~~~l~~~t~e~~~~~tGv~~e~I~~~A~~~a~a~~~i  311 (574)
T cd02767         239 -------ALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWDEIERASGLSREEIEAFAAMYAKSERVV  311 (574)
T ss_pred             -------HHHHHHHHHHHhCccccCCCcCHHHHHHHccCHHHHHHHHHcCCHHHHHhHhCcCHHHHHHHHHHHHhCCCEE
Confidence                   11111222222221    1112333333322222222        222222222 577889999987765 55


Q ss_pred             EEEeCCCC
Q 006659          494 LVFGRGYN  501 (636)
Q Consensus       494 ~~lG~G~~  501 (636)
                      ++.|.|..
T Consensus       312 i~~g~Gi~  319 (574)
T cd02767         312 FVWGMGIT  319 (574)
T ss_pred             EEecchhc
Confidence            66688764

These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains

Probab=95.04  E-value=0.19  Score=46.62  Aligned_cols=120  Identities=13%  Similarity=0.110  Sum_probs=65.7

Q ss_pred             HHHHHHHHhc---CCCeEEEEeCCCCHH---HHHHHHHHHHHhcccc--cccccccccccccccccc-CCCCeEEEEeCC
Q 006659          479 EMKVLAKQLI---AEQSLLVFGRGYNYA---TALEGALKVKEVALMH--SEGILAGEMKHGPLALVD-ENLPILVIATRD  549 (636)
Q Consensus       479 ~~~~~a~~l~---~~~~~~~lG~G~~~~---~A~e~alKl~E~~~~~--a~~~~~~Ef~HGp~~~~~-~~~~vi~l~~~~  549 (636)
                      .++++++++.   ..++++++|.|-++.   .+.++..++.- ...+  .....-.++.+-....++ +++.++++.-.|
T Consensus         6 ~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~-~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkSG   84 (158)
T cd05015           6 RIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFK-GGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSG   84 (158)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhcc-CCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECCc
Confidence            3455565553   478999999999877   55566555321 1222  222222444333333444 566666666566


Q ss_pred             cchHHHHHHHHHHHh---------cCCeEEEEecCCCCcCC-CCCCcceEEEcCC-CCcchh
Q 006659          550 ACFSKQQSVIQQLHA---------RKGRLIVMCSKGDAASI-FPGGSCRVIEVPQ-VEDCLQ  600 (636)
Q Consensus       550 ~~~~~~~~~~~~~~~---------~g~~v~vi~~~~~~~~~-~~~~~~~~~~~p~-~~~~~~  600 (636)
                      .+.|-+ ...+.+++         .+.++++||+.+..... ........+.+|. +.+-++
T Consensus        85 ~T~Et~-~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~~vggR~S  145 (158)
T cd05015          85 TTLETL-ANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIPDWVGGRFS  145 (158)
T ss_pred             CCHHHH-HHHHHHHHHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCCCCCCchHH
Confidence            665543 33444444         68899999997653211 1123445677774 443333

This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.

>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons

Probab=94.20  E-value=1.5  Score=49.03  Aligned_cols=124  Identities=15%  Similarity=0.274  Sum_probs=68.8

Q ss_pred             CCCcEEEEEcCCC--CCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHH
Q 006659          365 YREDTAVFVSQSG--ETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLA  442 (636)
Q Consensus       365 ~~~dlvI~iS~SG--~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~  442 (636)
                      ..-|++|++...-  +.+.....+..++++|+++|.|-.. .++.+..||..|.+..|.+.       .    +++.++-
T Consensus       155 ~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~-~s~ta~~Ad~~l~i~PGtD~-------a----l~lal~~  222 (512)
T cd02753         155 EEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPR-RTELARFADLHLQLRPGTDV-------A----LLNAMAH  222 (512)
T ss_pred             HhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCC-CccchHhhCeeeCCCCCcHH-------H----HHHHHHH
Confidence            3456777765432  2334445667788999999999876 67778899988877554332       1    1112222


Q ss_pred             HHHhcCCCCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCCC
Q 006659          443 LAIGGDTISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGYN  501 (636)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~~  501 (636)
                      ..+. ....+.+..++....++.+        ++.+.+.... .+.++++|+.+... +.+++.|.|..
T Consensus       223 ~l~~-~~~~d~~fv~~~t~gf~~~~~~~~~~t~e~~~~~~gv~~~~i~~lA~~~~~~~~~~i~~g~g~~  290 (512)
T cd02753         223 VIIE-EGLYDEEFIEERTEGFEELKEIVEKYTPEYAERITGVPAEDIREAARMYATAKSAAILWGMGVT  290 (512)
T ss_pred             HHHH-CCCcCHHHHHHHhhhHHHHHHHHHhCCHHHHHHHhCcCHHHHHHHHHHHHhCCCeEEEeCchhh
Confidence            2222 2112333333333333322        2333332222 46678899988765 46677788754

It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK09939 putative oxidoreductase; Provisional

Probab=93.81  E-value=1.3  Score=51.79  Aligned_cols=56  Identities=14%  Similarity=0.226  Sum_probs=36.8

Q ss_pred             CCcEEEEEc-CCCCC-HHHHHHHHHHHHcCCeEEEEEcCCCC-----------------ccccccCeeEEcCCCC
Q 006659          366 REDTAVFVS-QSGET-ADTLQALEYASENGALCVGITNTVGS-----------------AIARKTHCGVHINAGA  421 (636)
Q Consensus       366 ~~dlvI~iS-~SG~t-~e~i~al~~ak~~g~~vi~IT~~~~s-----------------~La~~ad~~l~~~~~~  421 (636)
                      .-|++|++. ..+++ +.+...++.++++|+++|+|-....-                 .-++.||..|.+..|.
T Consensus       208 ~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irPGt  282 (759)
T PRK09939        208 KCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIGG  282 (759)
T ss_pred             hCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCCCh
Confidence            456777764 44543 34566778899999999999664321                 1367889888765443

>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]

Probab=93.46  E-value=2.6  Score=39.91  Aligned_cols=152  Identities=18%  Similarity=0.124  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHH----------------HHHHhcccccccccccccccccc--ccccCC
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGAL----------------KVKEVALMHSEGILAGEMKHGPL--ALVDEN  539 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~al----------------Kl~E~~~~~a~~~~~~Ef~HGp~--~~~~~~  539 (636)
                      +.++..|+.+.+..++++.|+|.++..|.|---                ++.|-+-..+.....+.+.---+  ..+.++
T Consensus        26 kaa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~~  105 (243)
T COG4821          26 KAAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRPN  105 (243)
T ss_pred             HHHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHhcCCCC
Confidence            334556777889999999999999999987422                11221111111111111111000  123356


Q ss_pred             CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCC--------------------CCcceEEEcCCCCc--
Q 006659          540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFP--------------------GGSCRVIEVPQVED--  597 (636)
Q Consensus       540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~--------------------~~~~~~~~~p~~~~--  597 (636)
                      ..++++.+.|.. ..-.+++++.++.|++||++|+-+.+....+                    ..+|.++++.+.+-  
T Consensus       106 DVliviSnSGrN-pvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ei~~  184 (243)
T COG4821         106 DVLIVISNSGRN-PVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGSEIKV  184 (243)
T ss_pred             CEEEEEeCCCCC-CcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCCcccchheeecCccccc
Confidence            667777666543 2235678889999999999997653310000                    12344555554322  


Q ss_pred             -chhhHHHHHHH-HHHHHHHHHHcCCCCCCCCCCc
Q 006659          598 -CLQPVINIVPL-QLLAYHLTVLRGYNVDQPRNLA  630 (636)
Q Consensus       598 -~~~~~~~~v~~-q~la~~lA~~~G~~pd~pr~l~  630 (636)
                       +.+-+..++.+ ++++-.+..+-+..-+-|.+++
T Consensus       185 ~ptSt~~g~~ilqa~faeai~~mv~~g~~pPvf~S  219 (243)
T COG4821         185 GPTSTVSGVTILQATFAEAIELMVEKGYTPPVFLS  219 (243)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhCCCCCCeeee
Confidence             23344455555 5555555555555545555554

>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite

Probab=92.84  E-value=3.7  Score=46.58  Aligned_cols=123  Identities=15%  Similarity=0.243  Sum_probs=66.6

Q ss_pred             CCcEEEEEcCCCCC--HHHHHHHHHHHHc--CCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHH
Q 006659          366 REDTAVFVSQSGET--ADTLQALEYASEN--GALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAML  441 (636)
Q Consensus       366 ~~dlvI~iS~SG~t--~e~i~al~~ak~~--g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL  441 (636)
                      .-|++|++......  +.....+..++++  |+++|.|-.. .++.+..||..|.+..+.+.       .    +++.++
T Consensus       157 ~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~-~t~ta~~Ad~~l~i~PGtD~-------a----l~la~~  224 (565)
T cd02754         157 HADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPR-RTRTADIADLHLPIRPGTDL-------A----LLNGLL  224 (565)
T ss_pred             hCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCC-CCcchHHhCeeeCCCCCccH-------H----HHHHHH
Confidence            45667666544322  2334556677777  9999999765 78889999998877554432       1    111222


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCCC
Q 006659          442 ALAIGGDTISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGYN  501 (636)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~~  501 (636)
                      -..+.. ...+.+.+++....++.+        |+.+.+.... .+.++++|+.+... +.+++.|.|..
T Consensus       225 ~~ii~~-~~~d~~fv~~~t~g~~~~~~~~~~~t~e~~a~itgv~~~~I~~lA~~~a~~~~~~i~~g~g~~  293 (565)
T cd02754         225 HVLIEE-GLIDRDFIDAHTEGFEELKAFVADYTPEKVAEITGVPEADIREAARLFGEARKVMSLWTMGVN  293 (565)
T ss_pred             HHHHHC-CCcCHHHHHHHhccHHHHHHHHhhCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence            222222 111233233222222222        2333333222 56688999988665 45667788764

Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type

Probab=92.08  E-value=3.5  Score=47.90  Aligned_cols=123  Identities=19%  Similarity=0.267  Sum_probs=68.9

Q ss_pred             CCcEEEEEcCC--CCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHH
Q 006659          366 REDTAVFVSQS--GETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLAL  443 (636)
Q Consensus       366 ~~dlvI~iS~S--G~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~  443 (636)
                      .-|++|++...  -+.+.....++.++++|+++|.|-.. .+..+..||..|.+..+.+.       .    +++.++-.
T Consensus       155 ~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~-~s~ta~~ad~~i~i~Pgtd~-------a----l~lal~~~  222 (671)
T TIGR01591       155 NADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPR-KTETAKIADLHIPLKPGTDI-------A----LLNAMANV  222 (671)
T ss_pred             hCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCcccCCCCCcHH-------H----HHHHHHHH
Confidence            45677666332  22334567778888999999999654 78888899988877554332       1    11222222


Q ss_pred             HHhcCCCCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCCC-eEEEEeCCCC
Q 006659          444 AIGGDTISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAEQ-SLLVFGRGYN  501 (636)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~~-~~~~lG~G~~  501 (636)
                      .+.... .+.+..++....++.+        |+...+.... .+.++++|+.+...+ .+++.|.|..
T Consensus       223 li~~~~-~d~~f~~~~t~gf~~~~~~~~~~t~e~~a~~~gv~~~~i~~lA~~l~~~~~~~i~~g~g~~  289 (671)
T TIGR01591       223 IIEEGL-YDKAFIEKRTEGFEEFREIVKGYTPEYVEDITGVPADLIREAARMYAKAGSAAILWGMGVT  289 (671)
T ss_pred             HHHCCC-cCHHHHHHHhhCHHHHHHHHHhCCHHHHHHHHCcCHHHHHHHHHHHhhCCCeEEEecCccc
Confidence            222221 1233333332222222        3333333332 566889999887665 5777787754

This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.

>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]

Probab=91.68  E-value=7.2  Score=36.02  Aligned_cols=114  Identities=18%  Similarity=0.118  Sum_probs=80.5

Q ss_pred             HHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHH-----HHhccccccccccc---------cccc------cccccccC
Q 006659          479 EMKVLAKQLIAEQSLLVFGRGYNYATALEGALKV-----KEVALMHSEGILAG---------EMKH------GPLALVDE  538 (636)
Q Consensus       479 ~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl-----~E~~~~~a~~~~~~---------Ef~H------Gp~~~~~~  538 (636)
                      ....+++-|..-..+...|.|-+++-|+-.+-.|     +|--.+|+.+....         +|.+      .--..-.+
T Consensus        30 aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~  109 (176)
T COG0279          30 AAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALGQP  109 (176)
T ss_pred             HHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcCCC
Confidence            3455667788889999999999999998665543     34455777776532         2222      22222346


Q ss_pred             CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659          539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQV  595 (636)
Q Consensus       539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~  595 (636)
                      +..++-|.+.| ..+.+.+.++..+++|.++++++.++......  -.|..+.+|..
T Consensus       110 GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~--~~D~~i~VPs~  163 (176)
T COG0279         110 GDVLIGISTSG-NSKNVLKAIEAAKEKGMTVIALTGKDGGKLAG--LLDVEIRVPST  163 (176)
T ss_pred             CCEEEEEeCCC-CCHHHHHHHHHHHHcCCEEEEEecCCCccccc--ccceEEecCCC
Confidence            88889998876 56778889999999999999999887543321  24777888964

>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=91.48  E-value=5.1  Score=45.18  Aligned_cols=104  Identities=17%  Similarity=0.264  Sum_probs=59.2

Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHH------
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA------  458 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~------  458 (636)
                      .++.++++|+++|.|-.. .++.++.||..|.+..|.+       ...    ++.++-..+... ..+.+.+++      
T Consensus       183 ~~~~a~~~G~kliviDPr-~t~ta~~AD~~l~irPGtD-------~aL----~~a~~~~ii~~~-~~D~~fi~~~t~Gf~  249 (539)
T cd02762         183 RLKAAKDRGGSLVVIDPR-RTETAKLADEHLFVRPGTD-------AWL----LAAMLAVLLAEG-LTDRRFLAEHCDGLD  249 (539)
T ss_pred             HHHHHHhCCCEEEEECCC-CchhhHhcCEeeCcCCCcH-------HHH----HHHHHHHHHHCC-CCChHHHHHHcCcHH
Confidence            567788999999998765 8888999999887755433       221    222222222222 112222222      


Q ss_pred             -HHHHHhhh-HHHHHHHHhc-hHHHHHHHHHhcCCC-eEEEEeCCCC
Q 006659          459 -IIDGLCDL-PNKVREVLKL-DQEMKVLAKQLIAEQ-SLLVFGRGYN  501 (636)
Q Consensus       459 -~~~~l~~l-~~~~~~~~~~-~~~~~~~a~~l~~~~-~~~~lG~G~~  501 (636)
                       +.+.+... ++.+.+.-.. .+.++++|+.+...+ .+++.|.|..
T Consensus       250 ~~~~~~~~~t~e~~~~~tGv~~~~I~~lA~~~a~~~~~~i~~g~G~~  296 (539)
T cd02762         250 EVRAALAEFTPEAYAPRCGVPAETIRRLAREFAAAPSAAVYGRLGVQ  296 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHhcCCceEEEECcccc
Confidence             22222222 3333433333 577899999887655 5666677754

These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=91.44  E-value=3.2  Score=44.92  Aligned_cols=140  Identities=10%  Similarity=0.152  Sum_probs=97.8

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCC-CCCC-cEEEEEcCCCCCHHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAP-IYRE-DTAVFVSQSGETADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~-dlvI~iS~SG~t~e~i~  384 (636)
                      +.++++++.+..-+..+++|.|-.+..|+..+.....+.-+...-..+.|+.+.+.. ++++ .++.++..--..+....
T Consensus       514 ~~i~~la~~l~~~~slLi~GRGy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~n  593 (670)
T KOG1268|consen  514 PKIKDLAKELKDHKSLLIMGRGYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQN  593 (670)
T ss_pred             HHHHHHHHHHhccceEEEecccccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHHH
Confidence            457888889999999999999999999988888777776666666667777766543 3443 34555566677888999


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      +++....++..-|.|++..+..-.+....+|.+|...+ ..   .+. -++.=+.+|..+++-.++-
T Consensus       594 a~qQv~aRkG~pIiic~~~~~~~~~~~~~~~~vP~tvD-Cl---Qgi-l~viPlQLlsyhlav~rg~  655 (670)
T KOG1268|consen  594 AIQQVTARKGRPIIICDKGDKEEQKAGNKTLEVPQTVD-CL---QGI-LNVIPLQLLSYHLAVLRGI  655 (670)
T ss_pred             HHHHHHhcCCCeEEEecCCCchhhcccceEEeCCchhh-hh---hhh-hhhhhHHHHHHHHHHHcCC
Confidence            99999998777888888877765555566777765321 11   111 1233456677777655543

>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins

Probab=91.12  E-value=5.3  Score=44.26  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             CCCcEEEEEcCCC-CC-H-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHH
Q 006659          365 YREDTAVFVSQSG-ET-A-DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAML  441 (636)
Q Consensus       365 ~~~dlvI~iS~SG-~t-~-e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL  441 (636)
                      ..-|++|.+...- .+ + .....+..++++|+++|.|-.. .|..+..||..|.+..+.+.       .    +++.++
T Consensus       159 ~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr-~s~ta~~Ad~~l~i~PGtD~-------a----l~~al~  226 (477)
T cd02759         159 ENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPR-LTWLAARADLWLPIRPGTDA-------A----LALGML  226 (477)
T ss_pred             hcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCC-CChhhHhhCeeeccCCCcHH-------H----HHHHHH
Confidence            3456766665432 22 2 4455667788899999988765 78889999998877554332       1    111122


Q ss_pred             HHHHhcCCCCcHHHHHHH-------HHHHhhh-HHHHHHHHhc-hHHHHHHHHHhcCCC-eEEEEeCCC
Q 006659          442 ALAIGGDTISTQARREAI-------IDGLCDL-PNKVREVLKL-DQEMKVLAKQLIAEQ-SLLVFGRGY  500 (636)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~-------~~~l~~l-~~~~~~~~~~-~~~~~~~a~~l~~~~-~~~~lG~G~  500 (636)
                      ...+.. ...+.+..++.       .+.+... ++...++... .+.++++|+.+...+ ..++.|.|.
T Consensus       227 ~~i~~~-~~~d~~f~~~~t~g~~~~~~~~~~~t~e~~~~itGv~~~~i~~lA~~~a~~~~~~i~~g~g~  294 (477)
T cd02759         227 NVIINE-GLYDKDFVENWCYGFEELAERVQEYTPEKVAEITGVPAEKIRKAARLYATAKPACIQWGLAI  294 (477)
T ss_pred             HHHHHC-CCcCHHHHHHHhccHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEcCCcc
Confidence            222222 11122222222       2222221 2333333322 456888998886654 566667664

The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins

Probab=91.01  E-value=3.5  Score=45.37  Aligned_cols=56  Identities=23%  Similarity=0.201  Sum_probs=38.6

Q ss_pred             CCCcEEEEEcCC-CCCH--HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659          365 YREDTAVFVSQS-GETA--DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA  421 (636)
Q Consensus       365 ~~~dlvI~iS~S-G~t~--e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~  421 (636)
                      ..-|++|++... -++.  .....+..++++|+++|.|-.. .++.++.||..|.+..|.
T Consensus       155 ~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr-~t~ta~~AD~~i~i~PGt  213 (454)
T cd02755         155 ENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPR-FSELASKADEWIPIKPGT  213 (454)
T ss_pred             hcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCEecCCCCCc
Confidence            445677776433 3332  1345566788899999999876 788899999988775543

Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes

Probab=90.67  E-value=1.4  Score=50.46  Aligned_cols=55  Identities=18%  Similarity=0.111  Sum_probs=37.2

Q ss_pred             CCcEEEEEcCCC-CCH----HHHHHHHHHHHcCCeEEEEEcCCCCcccc-ccCeeEEcCCCC
Q 006659          366 REDTAVFVSQSG-ETA----DTLQALEYASENGALCVGITNTVGSAIAR-KTHCGVHINAGA  421 (636)
Q Consensus       366 ~~dlvI~iS~SG-~t~----e~i~al~~ak~~g~~vi~IT~~~~s~La~-~ad~~l~~~~~~  421 (636)
                      .-+++|++...- .|.    .....+..||++|+++|.|-.. .++.+. .||..|.+..|.
T Consensus       166 ~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr-~t~tA~~~AD~~i~irPGT  226 (617)
T cd02770         166 DSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPR-YTDTAVTLADEWIPIRPGT  226 (617)
T ss_pred             cCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCC-CCccccccCCEEECCCCCc
Confidence            456777765442 221    1235667889999999999776 567775 899988775543

Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PTZ00254 40S ribosomal protein SA; Provisional

Probab=90.37  E-value=5.1  Score=39.83  Aligned_cols=119  Identities=12%  Similarity=0.043  Sum_probs=66.3

Q ss_pred             HHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE--eeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 006659          314 KTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM--EIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYAS  390 (636)
Q Consensus       314 ~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~--~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak  390 (636)
                      ..+.+.+.|+|+|+....  ......+..+. +.....  ..+.-|. ........-+++|++....    -..++++|.
T Consensus        66 ~~i~~~~~Il~Vstr~~~--~~~V~k~A~~t-g~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~~----d~qAI~EA~  138 (249)
T PTZ00254         66 AAIENPADVVVVSSRPYG--QRAVLKFAQYT-GASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPRT----DHQAIREAS  138 (249)
T ss_pred             HHHhCCCcEEEEEcCHHH--HHHHHHHHHHh-CCeEECCcccCCCCCCccccccCCCCEEEEeCCCc----chHHHHHHH
Confidence            445678889999987643  23333333333 322111  1222221 1112234667888876433    347888999


Q ss_pred             HcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659          391 ENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       391 ~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      ..|++||+|++. ++++.- .|+.|+++.         +|..+.-+++.+|+-.+...++
T Consensus       139 ~lnIPvIal~DT-ds~p~~-VDy~IP~Nd---------ds~~SI~li~~lLar~Vl~~rG  187 (249)
T PTZ00254        139 YVNIPVIALCDT-DSPLEY-VDIAIPCNN---------RGKESIALMYWLLAREVLRLRG  187 (249)
T ss_pred             HhCCCEEEEecC-CCCccc-CceeeCCCC---------chHHHHHHHHHHHHHHHHHhhC
Confidence            999999999987 666543 677665432         2333334445555555544433

>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal)

Probab=89.98  E-value=8.2  Score=37.03  Aligned_cols=118  Identities=17%  Similarity=0.118  Sum_probs=64.5

Q ss_pred             HHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEE-Eeeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659          314 KTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVT-MEIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASE  391 (636)
Q Consensus       314 ~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~-~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~  391 (636)
                      ..+. .++|+|+|......  ...+.+..+.+...+. -..+..+. ........-|++|++....    -..|+++|.+
T Consensus        57 ~~i~-~~~ILfVgtk~~~~--~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~----~~~Av~EA~~  129 (196)
T TIGR01012        57 VRIE-PEDILVVSARIYGQ--KPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRA----DHQALKEASE  129 (196)
T ss_pred             HHhh-CCeEEEEecCHHHH--HHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcc----ccHHHHHHHH
Confidence            3444 78999999976532  3344444443222111 11122221 1112235677888875443    3578899999


Q ss_pred             cCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCC
Q 006659          392 NGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDT  449 (636)
Q Consensus       392 ~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~  449 (636)
                      .|++||+|++. +++. +..|+.|+.+.         .|..+.-+++.+|+-.+...+
T Consensus       130 l~IP~Iai~DT-n~dp-~~vdypIP~Nd---------ds~~Si~li~~lla~ail~~~  176 (196)
T TIGR01012       130 VGIPIVALCDT-DNPL-RYVDLVIPTNN---------KGRHSLALIYWLLAREILRMR  176 (196)
T ss_pred             cCCCEEEEeeC-CCCC-ccCCEEECCCC---------chHHHHHHHHHHHHHHHHHhh
Confidence            99999999997 4443 34676664422         233333445555555554443

TIGR01011 describes the related protein of organelles and bacteria.

>PRK04020 rps2P 30S ribosomal protein S2; Provisional

Probab=88.43  E-value=11  Score=36.53  Aligned_cols=92  Identities=16%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEE-Eeeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCe
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELSDLPVT-MEIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASENGAL  395 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~-~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~  395 (636)
                      +.++|+|+|.....  ....+.+..+.+...+. -..+..+. +........|++|++....+    ..|+++|.+.|++
T Consensus        66 ~~~~ILfVgTk~~~--~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~----~~AI~EA~kl~IP  139 (204)
T PRK04020         66 EPEKILVVSSRQYG--QKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGD----AQAVKEAIEVGIP  139 (204)
T ss_pred             cCCeEEEEeCCHHH--HHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCccc----HHHHHHHHHhCCC
Confidence            56899999887643  23444444443221111 11122221 11111235688888876544    6788899999999


Q ss_pred             EEEEEcCCCCccccccCeeEEc
Q 006659          396 CVGITNTVGSAIARKTHCGVHI  417 (636)
Q Consensus       396 vi~IT~~~~s~La~~ad~~l~~  417 (636)
                      ||+|++.... . +..|+.|+.
T Consensus       140 ~IaivDTn~d-p-~~VdypIP~  159 (204)
T PRK04020        140 VVALCDTDNL-T-SNVDLVIPT  159 (204)
T ss_pred             EEEEEeCCCC-c-ccCceeECC
Confidence            9999998444 4 457776644

>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins

Probab=87.35  E-value=14  Score=40.72  Aligned_cols=56  Identities=25%  Similarity=0.221  Sum_probs=37.8

Q ss_pred             CCCcEEEEEcCC-CCCH-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659          365 YREDTAVFVSQS-GETA-DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA  421 (636)
Q Consensus       365 ~~~dlvI~iS~S-G~t~-e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~  421 (636)
                      ..-|++|++... ..+. -....+..+|++|+++|.|-.. .++.++.||..|.+..|.
T Consensus       169 ~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr-~s~ta~~Ad~~l~i~PGt  226 (461)
T cd02750         169 YNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPD-YSPSAKHADLWVPIKPGT  226 (461)
T ss_pred             hcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCC-CCcchhhcCEEeccCCCc
Confidence            345677776433 2221 2234456689999999999665 789999999988775543

Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E

Probab=87.13  E-value=11  Score=43.40  Aligned_cols=57  Identities=19%  Similarity=0.208  Sum_probs=37.3

Q ss_pred             CCCcEEEEEc-CCCCC-HHHHHHHHHHHHc-CCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659          365 YREDTAVFVS-QSGET-ADTLQALEYASEN-GALCVGITNTVGSAIARKTHCGVHINAGAE  422 (636)
Q Consensus       365 ~~~dlvI~iS-~SG~t-~e~i~al~~ak~~-g~~vi~IT~~~~s~La~~ad~~l~~~~~~e  422 (636)
                      ..-|++|++. ..-++ +-...-+..|+++ |+++|.|-.. .+..+..||..+.+..|.+
T Consensus       168 ~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR-~t~Ta~~AD~~l~irPGTD  227 (649)
T cd02752         168 KNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPR-FTRTAAKADLYVPIRSGTD  227 (649)
T ss_pred             hcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCC-CCchhHhcCEeeCcCCChH
Confidence            3456666663 32222 2233445667776 9999999876 7888899999887765443

coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=86.47  E-value=4.7  Score=45.03  Aligned_cols=123  Identities=16%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             CCcEEEEE-cCCCC-CHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHH
Q 006659          366 REDTAVFV-SQSGE-TADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLAL  443 (636)
Q Consensus       366 ~~dlvI~i-S~SG~-t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~  443 (636)
                      .-|++|++ +.... .+.....+..++++|+++|+|-.. .++.++.||..|.+..|.+.       .    +++.++-.
T Consensus       157 ~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr-~t~ta~~Ad~~l~i~PGtD~-------a----l~~al~~~  224 (501)
T cd02766         157 NADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPY-RTATAARADLHIQIRPGTDG-------A----LALGVAKV  224 (501)
T ss_pred             cCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCC-CCccHHHhCeeeccCCCcHH-------H----HHHHHHHH
Confidence            44566655 33333 334446677799999999998664 88899999998877654332       1    11222222


Q ss_pred             HHhcCCCCcHHHHHHHHHHHhhh--------HHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCCC
Q 006659          444 AIGGDTISTQARREAIIDGLCDL--------PNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGYN  501 (636)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~l~~l--------~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~~  501 (636)
                      .+... ..+.+..++....++.+        |+.+.+.... .+.++++|+.+... +.+++.|.|..
T Consensus       225 ii~~~-~~d~~fv~~~t~gf~~~~~~v~~~t~e~~~~~tgv~~~~I~~~A~~~a~~~~~~i~~g~g~~  291 (501)
T cd02766         225 LFREG-LYDRDFLARHTEGFEELKAHLETYTPEWAAEITGVSAEEIEELARLYGEAKPPSIRLGYGMQ  291 (501)
T ss_pred             HHHCC-CccHHHHHHhcCCHHHHHHHHhhCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecchhh
Confidence            22221 11223222222222222        2333333322 56688999988764 45666777754

These members belong to the molybdopterin_binding (MopB) superfamily of proteins

>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor

Probab=85.89  E-value=9.9  Score=40.33  Aligned_cols=54  Identities=19%  Similarity=0.151  Sum_probs=38.2

Q ss_pred             CCcEEEEEcC--CCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659          366 REDTAVFVSQ--SGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG  420 (636)
Q Consensus       366 ~~dlvI~iS~--SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~  420 (636)
                      .-|++|.+-.  ..+.+.....+..++++|+++|.|... .++.+..+|..+.+..+
T Consensus       156 ~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~-~s~t~~~ad~~i~i~pg  211 (374)
T cd00368         156 NADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPR-RTETAAKADEWLPIRPG  211 (374)
T ss_pred             hCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCC-CCcchHhhCEeeCCCCC
Confidence            4566666642  233444566777888899999999886 67788899998877543

The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is

>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit

Probab=85.88  E-value=22  Score=42.90  Aligned_cols=56  Identities=20%  Similarity=0.167  Sum_probs=37.6

Q ss_pred             CCcEEEEE-cCCCCC-HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659          366 REDTAVFV-SQSGET-ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE  422 (636)
Q Consensus       366 ~~dlvI~i-S~SG~t-~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e  422 (636)
                      .-+++|++ +....| +-....+..|+++|+++|+|-.. -++.++.||..|.+..|.+
T Consensus       224 na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr-~t~tA~~AD~wlpirPGTD  281 (912)
T TIGR03479       224 NADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPD-YNPSTIHADLWLPVRVGTD  281 (912)
T ss_pred             cCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCC-CChhhhhCCeecCCCCCcH
Confidence            34555555 333322 22345566788999999999766 7888999999887755443

This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices

Probab=84.76  E-value=2.8  Score=38.84  Aligned_cols=80  Identities=13%  Similarity=0.032  Sum_probs=46.6

Q ss_pred             CCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHh
Q 006659          115 NSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHL  194 (636)
Q Consensus       115 n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  194 (636)
                      +-|-+...   +...-.=|.|||..-|+.-...-...-..-+|+|++..++.+.    |              ..++..-
T Consensus        40 ~~qk~~~~---~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~l----G--------------~~aLsLA   98 (201)
T PF09147_consen   40 PFQKMRFE---RGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRL----G--------------NSALSLA   98 (201)
T ss_dssp             -EEEEEET---TEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-------------------GGGGGG-
T ss_pred             ceeEEEec---CccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHh----h--------------hhhhhhh
Confidence            34555544   4444455999998777665532222223469999998777643    2              3456666


Q ss_pred             hhhhheeEEecCCCCeEEEEEcC
Q 006659          195 EGAYALIFKSQHYPNELIACKRG  217 (636)
Q Consensus       195 ~G~~a~~~~d~~~~~~l~~~Rd~  217 (636)
                      +|.|+|.+=++  .++|.+..|+
T Consensus        99 EGdfcffiE~k--ng~L~l~Tds  119 (201)
T PF09147_consen   99 EGDFCFFIEDK--NGELTLITDS  119 (201)
T ss_dssp             -SSEEEEEEET--TSEEEEEE-S
T ss_pred             cCceEEEEecC--CCcEEEEecC
Confidence            89999988775  5899999998

Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.

>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins

Probab=84.74  E-value=6.3  Score=45.17  Aligned_cols=106  Identities=12%  Similarity=0.195  Sum_probs=61.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCccccccC-eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHH--
Q 006659          383 LQALEYASENGALCVGITNTVGSAIARKTH-CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAI--  459 (636)
Q Consensus       383 i~al~~ak~~g~~vi~IT~~~~s~La~~ad-~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~--  459 (636)
                      ...+..+|++|+++|+|-.. .++.++.|| ..|.+..|.+       ...+    +.++-..+... .-+.+.+++.  
T Consensus       198 ~~~~~~ar~~GaklIvIDPr-~t~tA~~add~~l~irPGTD-------~ALa----lam~~~ii~e~-~~D~~Fv~~~t~  264 (609)
T cd02769         198 YSYLKALKDRGIRFISISPL-RDDTAAELGAEWIAIRPGTD-------VALM----LALAHTLVTEG-LHDKAFLARYTV  264 (609)
T ss_pred             HHHHHHHHhCCCEEEEEcCC-CCcchhhhcCcEeccCCCcH-------HHHH----HHHHHHHHHcC-CccHHHHHHHcc
Confidence            45667889999999999886 777888776 6776654333       2221    12222222221 1123333332  


Q ss_pred             -----HHHHh-------hhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCC
Q 006659          460 -----IDGLC-------DLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYN  501 (636)
Q Consensus       460 -----~~~l~-------~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~  501 (636)
                           .+.+.       .-|+.+.++... .+.++++|+.+...+.+++.|.|..
T Consensus       265 Gfe~~~~~l~~~~dg~~~tpe~aa~itGV~ae~I~~lA~~~a~~~~~i~~g~g~~  319 (609)
T cd02769         265 GFDKFLPYLLGESDGVPKTPEWAAAICGIPAETIRELARRFASKRTMIMAGWSLQ  319 (609)
T ss_pred             CHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHhhcCcEEEecccch
Confidence                 22332       234444444333 6788999999877667777787754

DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases

Probab=83.01  E-value=8.8  Score=45.37  Aligned_cols=107  Identities=11%  Similarity=0.121  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccc-cCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHH-
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARK-THCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAI-  459 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~-ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~-  459 (636)
                      ....++.+|++|+++|+|-.. -++.++. +|..|.+..|.+       ...    ++.++-..+... .-+.+.+++. 
T Consensus       193 ~~~~~~~a~~~G~klIvIDPr-~t~tA~~aaD~~l~irPGTD-------~AL----~lam~~~ii~e~-l~D~~fi~~~t  259 (770)
T TIGR00509       193 GYEYLERLKAKGKRVISIDPV-RTETAEFFGAEWIPPNPQTD-------VAL----MLGLAHTLVTEG-LYDKDFLAKYT  259 (770)
T ss_pred             hHHHHHHHHHcCCEEEEEcCC-CCcchhhccCeEeCcCCCcH-------HHH----HHHHHHHHHHcc-cccHHHHHHHc
Confidence            346677889999999999876 6777776 588887755433       221    122222222221 1123333322 


Q ss_pred             ------HHHHh-------hhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCC
Q 006659          460 ------IDGLC-------DLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYN  501 (636)
Q Consensus       460 ------~~~l~-------~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~  501 (636)
                            .+.+.       .-|+.+.+..-. .+.++++|+.+...+..++.|.|..
T Consensus       260 ~gfe~~~~~l~~~~~g~~~tpe~aa~itGV~a~~I~~lA~~~a~~~~~i~~g~g~~  315 (770)
T TIGR00509       260 SGFEKFLPYLLGETDGTPKTAEWASKITGVPAETIKELARLFASKRTMLAAGWSMQ  315 (770)
T ss_pred             ccHHHHHHHhcCCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHhccceeeccchhh
Confidence                  22221       234444444433 6778999998877666667777743

This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.

>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type

Probab=82.90  E-value=29  Score=42.23  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=39.8

Q ss_pred             CCcEEEEEc-CCCCC-HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659          366 REDTAVFVS-QSGET-ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE  422 (636)
Q Consensus       366 ~~dlvI~iS-~SG~t-~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e  422 (636)
                      .-|++|++. ...++ +-....+..||++|+++|+|-.. .++.++.||..|.+..|.+
T Consensus       221 ~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR-~t~tA~~AD~~l~irPGTD  278 (1009)
T TIGR01553       221 NSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPR-FNRTATVADLYAPIRSGSD  278 (1009)
T ss_pred             hCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCC-CCchhHhhccEeCCCCChH
Confidence            456776664 33433 33456667889999999999665 7889999999887765443

This model is well-defined, with a large, unpopulated trusted/noise gap.

>PRK13532 nitrate reductase catalytic subunit; Provisional

Probab=82.57  E-value=39  Score=40.31  Aligned_cols=56  Identities=7%  Similarity=-0.008  Sum_probs=34.9

Q ss_pred             CCcEEEEEcCCC-CCH-HHHHHHHHHH--HcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659          366 REDTAVFVSQSG-ETA-DTLQALEYAS--ENGALCVGITNTVGSAIARKTHCGVHINAGAE  422 (636)
Q Consensus       366 ~~dlvI~iS~SG-~t~-e~i~al~~ak--~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e  422 (636)
                      .-+++|++.... .+. -...-+..++  ++|+++|.|-.. .++.++.||..|.+..|.+
T Consensus       206 ~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr-~t~ta~~ad~~l~irPGtD  265 (830)
T PRK13532        206 AADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTF-EHRSFELADNGIIFTPQTD  265 (830)
T ss_pred             hCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCC-CCchhHhcCeeeccCCCCc
Confidence            456777775443 321 1112222233  479999999655 6888999999887765544

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=80.85  E-value=5  Score=43.08  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=23.8

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccC
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRG   34 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG   34 (636)
                      |||--+.+.++..+ -+....-+.+|..|.|||
T Consensus         1 CGvG~va~~~g~~s-h~iv~~al~~L~~m~HRG   32 (413)
T cd00713           1 CGVGFVANIDGKPS-HDIVQDALEALERMEHRG   32 (413)
T ss_pred             CeEEEEEECCCCch-HHHHHHHHHHHhhCcCCC
Confidence            99966666665433 345677788999999999

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]

Probab=80.64  E-value=78  Score=33.13  Aligned_cols=116  Identities=15%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             ccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcC----CcEEEee-ccch-hcc----cC----CCCCCcEEE
Q 006659          306 LGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSD----LPVTMEI-ASDL-VDR----QA----PIYREDTAV  371 (636)
Q Consensus       306 ~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~----~~~~~~~-~~e~-~~~----~~----~~~~~dlvI  371 (636)
                      .++++++++.|.++++..++|.+++..=|+.+.--+....+    -...+.. ++-. ...    ..    .-+..|++|
T Consensus        66 deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~gaviD~~asvchGp~~~alqe~g~p~~TlgevKNraDviV  145 (429)
T COG1029          66 DEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGAVIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIV  145 (429)
T ss_pred             HHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCcEecCCCccccchHHHHHHhcCCcccchhhhcccccEEE
Confidence            35678899999999999999999887666554433333222    1111111 1111 000    01    123556666


Q ss_pred             EEcCCCCCHHHHHHHH-------HHHHcC--CeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659          372 FVSQSGETADTLQALE-------YASENG--ALCVGITNTVGSAIARKTHCGVHINAGA  421 (636)
Q Consensus       372 ~iS~SG~t~e~i~al~-------~ak~~g--~~vi~IT~~~~s~La~~ad~~l~~~~~~  421 (636)
                      .--...--.-.-.+-+       ..+++|  =+++.+.+-..++-+++||.++.+..+.
T Consensus       146 yWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~s  204 (429)
T COG1029         146 YWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNS  204 (429)
T ss_pred             EeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCC
Confidence            4322111111111111       122332  3455555666899999999999886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	636
2zj3_A	375	Isomerase Domain Of Human Glucose:fructose-6-Phosph		1e-125
2v4m_A	376	The Isomerase Domain Of Human Glutamine-Fructose-6-		1e-125
2poc_A	367	The Crystal Structure Of Isomerase Domain Of Glucos		1e-116
1jxa_A	608	Glucosamine 6-Phosphate Synthase With Glucose 6-Pho		1e-109
2j6h_A	608	E. Coli Glucosamine-6-p Synthase In Complex With Gl		1e-108
3ooj_A	608	C1a Mutant Of E. Coli Glms In Complex With Glucose-		1e-108
1mos_A	368	Isomerase Domain Of Glucosamine 6-phosphate Synthas		1e-75
3tbf_A	372	C-Terminal Domain Of Glucosamine-Fructose-6-Phospha		5e-65
1xff_A	240	Glutaminase Domain Of Glucosamine 6-Phosphate Synth		7e-31
3fj1_A	344	Crystal Structure Of Putative Phosphosugar Isomeras		6e-21
3hba_A	334	Crystal Structure Of A Putative Phosphosugar Isomer		7e-21
2cb0_A	333	Crystal Structure Of Glucosamine 6-Phosphate Deamin		4e-19
2dec_A	325	Crystal Structure Of The Ph0510 Protein From Pyroco		9e-17
1j5x_A	342	Crystal Structure Of Glucosamine-6-Phosphate Deamin		3e-13
3g68_A	352	Crystal Structure Of A Putative Phosphosugar Isomer		8e-13
3eua_A	329	Crystal Structure Of A Putative Phosphosugar Isomer		1e-10
2aml_A	373	Crystal Structure Of Lmo0035 Protein (46906266) Fro		1e-10
3fkj_A	347	Crystal Structure Of A Putative Phosphosugar Isomer		1e-05
3knz_A	366	Crystal Structure Of Putative Sugar Binding Protein		3e-05
1gph_1	465	Structure Of The Allosteric Regulatory Enzyme Of Pu		1e-04
1ao0_A	459	Glutamine Phosphoribosylpyrophosphate (Prpp) Amidot		1e-04

>pdb|2ZJ3|A Chain A, Isomerase Domain Of Human Glucose:fructose-6-Phosphate Amidotransferase Length = 375

Iteration: 1
 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/374 (57%), Positives = 285/374 (76%), Gaps = 6/374 (1%)
Query: 263 EQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRI 322
           +QI KGN+  +MQKEI EQPES+  TMRGR+    +    +V LGGLKDH+K I+R RR+
Sbjct: 8   QQIMKGNFSSFMQKEIFEQPESVVNTMRGRV----NFDDYTVNLGGLKDHIKEIQRCRRL 63
Query: 323 VFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADT 382
           + I CGTSY+A +A R +LEEL++LPV +E+ASD +DR  P++R+D   F+SQSGETADT
Sbjct: 64  ILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADT 123
Query: 383 LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLA 442
           L  L Y  E GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYTSQ V + M A
Sbjct: 124 LMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFA 183
Query: 443 LAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNY 502
           L +  D IS Q RR+ I+ GL  LP+ ++EVL +D E++ LA +L  ++S+L+ GRGY+Y
Sbjct: 184 LMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHY 243
Query: 503 ATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQL 562
           AT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P+++I  RD  ++K Q+ +QQ+
Sbjct: 244 ATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQV 303
Query: 563 HARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYN 622
            AR+GR +V+C K D  +I    + R I+VP   DCLQ +++++PLQLLA+HL VLRGY+
Sbjct: 304 VARQGRPVVICDKEDTETI--KNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYD 361
Query: 623 VDQPRNLAKSVTTQ 636
           VD PRNLAKSVT +
Sbjct: 362 VDFPRNLAKSVTVE 375

>pdb|2V4M|A Chain A, The Isomerase Domain Of Human Glutamine-Fructose-6- Phosphate Transaminase 1 (Gfpt1) In Complex With Fructose 6-Phosphate Length = 376

Iteration: 1
 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/374 (57%), Positives = 285/374 (76%), Gaps = 6/374 (1%)
Query: 263 EQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRI 322
           +QI KGN+  +MQKEI EQPES+  TMRGR+    +    +V LGGLKDH+K I+R RR+
Sbjct: 9   QQIMKGNFSSFMQKEIFEQPESVVNTMRGRV----NFDDYTVNLGGLKDHIKEIQRCRRL 64
Query: 323 VFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADT 382
           + I CGTSY+A +A R +LEEL++LPV +E+ASD +DR  P++R+D   F+SQSGETADT
Sbjct: 65  ILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADT 124
Query: 383 LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLA 442
           L  L Y  E GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYTSQ V + M A
Sbjct: 125 LMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFA 184
Query: 443 LAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNY 502
           L +  D IS Q RR+ I+ GL  LP+ ++EVL +D E++ LA +L  ++S+L+ GRGY+Y
Sbjct: 185 LMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHY 244
Query: 503 ATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQL 562
           AT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P+++I  RD  ++K Q+ +QQ+
Sbjct: 245 ATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQV 304
Query: 563 HARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYN 622
            AR+GR +V+C K D  +I    + R I+VP   DCLQ +++++PLQLLA+HL VLRGY+
Sbjct: 305 VARQGRPVVICDKEDTETI--KNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYD 362
Query: 623 VDQPRNLAKSVTTQ 636
           VD PRNLAKSVT +
Sbjct: 363 VDFPRNLAKSVTVE 376

>pdb|2POC|A Chain A, The Crystal Structure Of Isomerase Domain Of Glucosamine-6-Phosphate Synthase From Candida Albicans Length = 367

Iteration: 1
 Score =  414 bits (1065), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/371 (57%), Positives = 283/371 (76%), Gaps = 6/371 (1%)
Query: 267 KGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIG 326
           KG Y+H+MQKEI EQP+S   TMRGR I   +C    V LGGLK  L TIRR RRI+ I 
Sbjct: 2   KGPYKHFMQKEIFEQPDSAFNTMRGR-IDFENC---VVTLGGLKSWLSTIRRCRRIIMIA 57
Query: 327 CGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQAL 386
           CGTSY++ LA R I EEL+++PV++E+ASD +DR++P++R+DT VFVSQSGETAD++ AL
Sbjct: 58  CGTSYHSCLATRSIFEELTEIPVSVELASDFLDRRSPVFRDDTCVFVSQSGETADSILAL 117
Query: 387 EYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIG 446
           +Y  E GAL VGI N+VGS+++R+THCGVHINAG EIGVASTKAYTSQ + + M AL++ 
Sbjct: 118 QYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGPEIGVASTKAYTSQYIALVMFALSLS 177
Query: 447 GDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQ-SLLVFGRGYNYATA 505
            D+IS + R E II GL  +P ++++VLKL+ ++K L    + +Q SLL+ GRGY +ATA
Sbjct: 178 NDSISRKGRHEEIIKGLQKIPEQIKQVLKLENKIKDLCNSSLNDQKSLLLLGRGYQFATA 237
Query: 506 LEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHAR 565
           LEGALK+KE++ MHSEG+LAGE+KHG LALVDE+LPI+  ATRD+ F K  S I+Q+ AR
Sbjct: 238 LEGALKIKEISYMHSEGVLAGELKHGILALVDEDLPIIAFATRDSLFPKVMSAIEQVTAR 297
Query: 566 KGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQ 625
            GR IV+C++GDA  I        +EVP+  DCLQ ++N++PLQL++Y L V RG +VD 
Sbjct: 298 DGRPIVICNEGDAI-ISNDKVHTTLEVPETVDCLQGLLNVIPLQLISYWLAVNRGIDVDF 356
Query: 626 PRNLAKSVTTQ 636
           PRNLAKSVT +
Sbjct: 357 PRNLAKSVTVE 367

>pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate Length = 608

Iteration: 1
 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/658 (36%), Positives = 358/658 (54%), Gaps = 73/658 (11%)
Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDXXXXXXXXXXXXXVNGC 61
           CGI   +       +R + ++L  GLRRLEYRGYDSAG+ + D                 
Sbjct: 1   CGIVGAI------AQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTR---------- 44
Query: 62  PPLVFRQEGNIESLVKSVYXXXXXXXXXXXXSFSIHAG--IAHTRWATHGEPAPRNSHPQ 119
                R+ G ++ L ++                 +H G  IAHTRWATHGEP+  N+HP 
Sbjct: 45  ----LRRLGKVQMLAQAA------------EEHPLHGGTGIAHTRWATHGEPSEVNAHPH 88
Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQ 179
            S      +VVHNG+I N+E L+E L   G+TF SETDTEVI  L  +        E  Q
Sbjct: 89  VS---EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNW--------ELKQ 137
Query: 180 PVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGA----------- 228
             T  + V+  +  L GAY  +     +P+ L+A + GSPL++G+  G            
Sbjct: 138 GGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALL 197
Query: 229 ------VSILKFDNAK--GRNGGTYARP-ASVQRALSILEMEVEQINKGNYEHYMQKEIH 279
                 + + + D A+   R+   + +  A V+R      ++ +  +KG Y HYMQKEI+
Sbjct: 198 PVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIY 257
Query: 280 EQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARP 339
           EQP ++  T+ GR+  G    ++   LG   D L  + +   I  + CGTSYN+ + +R 
Sbjct: 258 EQPNAIKNTLTGRISHGQVDLSE---LGPNADEL--LSKVEHIQILACGTSYNSGMVSRY 312
Query: 340 ILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGAL-CVG 398
             E L+ +P  +EIAS+   R++ + R    + +SQSGETADTL  L  + E G L  + 
Sbjct: 313 WFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLA 372
Query: 399 ITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA 458
           I N  GS++ R++   +  NAG EIGVASTKA+T+Q+ V+ ML   +        +    
Sbjct: 373 ICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKGLDASIEHD 432
Query: 459 IIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALM 518
           I+ GL  LP+++ ++L  D+ ++ LA+    +   L  GRG  Y  ALEGALK+KE++ +
Sbjct: 433 IVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYI 492
Query: 519 HSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDA 578
           H+E   AGE+KHGPLAL+D ++P++V+A  +    K +S I+++ AR G+L V   +   
Sbjct: 493 HAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQD-- 550
Query: 579 ASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
           A      +  +IE+P VE+ + P+   VPLQLLAYH+ +++G +VDQPRNLAKSVT +
Sbjct: 551 AGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 608

>pdb|2J6H|A Chain A, E. Coli Glucosamine-6-p Synthase In Complex With Glucose-6p And 5-oxo-l-norleucine Length = 608

Iteration: 1
 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/658 (36%), Positives = 358/658 (54%), Gaps = 73/658 (11%)
Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDXXXXXXXXXXXXXVNGC 61
           CGI   +       +R + ++L  GLRRLEYRGYDSAG+ + D                 
Sbjct: 1   CGIVGAI------AQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTR---------- 44
Query: 62  PPLVFRQEGNIESLVKSVYXXXXXXXXXXXXSFSIHAG--IAHTRWATHGEPAPRNSHPQ 119
                R+ G ++ L ++                 +H G  IAHTRWATHGEP+  N+HP 
Sbjct: 45  ----LRRLGKVQMLAQAA------------EEHPLHGGTGIAHTRWATHGEPSEVNAHPH 88
Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQ 179
            S      +VVHNG+I N+E L+E L   G+TF SETDTEVI  L  +        E  Q
Sbjct: 89  VS---EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNW--------ELKQ 137
Query: 180 PVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGA----------- 228
             T  + V+  +  L GAY  +     +P+ L+A + GSPL++G+  G            
Sbjct: 138 GGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALL 197
Query: 229 ------VSILKFDNAK--GRNGGTYARP-ASVQRALSILEMEVEQINKGNYEHYMQKEIH 279
                 + + + D A+   R+   + +  A V+R      ++ +  +KG Y HYMQKEI+
Sbjct: 198 PVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIY 257
Query: 280 EQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARP 339
           EQP ++  T+ GR+  G    ++   LG   D L  + +   I  + CGTSYN+ + +R 
Sbjct: 258 EQPNAIKNTLTGRISHGQVDLSE---LGPNADEL--LSKVEHIQILACGTSYNSGMVSRY 312
Query: 340 ILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGAL-CVG 398
             E L+ +P  +EIAS+   R++ + R    + +SQSGETADTL  L  + E G L  + 
Sbjct: 313 WFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLA 372
Query: 399 ITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA 458
           I N  GS++ R++   +  NAG EIGVASTKA+T+Q+ V+ ML   +        +    
Sbjct: 373 ICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHD 432
Query: 459 IIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALM 518
           I+ GL  LP+++ ++L  D+ ++ LA+    +   L  GRG  Y  ALEGALK+KE++ +
Sbjct: 433 IVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYI 492
Query: 519 HSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDA 578
           H+E   AGE+KHGPLAL+D ++P++V+A  +    K +S I+++ AR G+L V   +   
Sbjct: 493 HAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQD-- 550
Query: 579 ASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
           A      +  +IE+P VE+ + P+   VPLQLLAYH+ +++G +VDQPRNLAKSVT +
Sbjct: 551 AGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 608

>pdb|3OOJ|A Chain A, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And Glutamate Length = 608

Iteration: 1
 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/644 (36%), Positives = 354/644 (54%), Gaps = 67/644 (10%)
Query: 16  RRYILQVLFNGLRRLEYRGYDSAGICIDDXXXXXXXXXXXXXVNGCPPLVFRQEGNIESL 75
           +R + ++L  GLRRLEYRGYDSAG+ + D                      R+ G ++ L
Sbjct: 9   QRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTR--------------LRRLGKVQML 54
Query: 76  VKSVYXXXXXXXXXXXXSFSIHAG--IAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNG 133
            ++                 +H G  IAHTRWATHGEP+  N+HP  S      +VVHNG
Sbjct: 55  AQAA------------EEHPLHGGTGIAHTRWATHGEPSEVNAHPHVS---EHIVVVHNG 99
Query: 134 VITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRH 193
           +I N+E L+E L   G+TF SETDTEVI  L  +        E  Q  T  + V+  +  
Sbjct: 100 IIENHEPLREELKARGYTFVSETDTEVIAHLVNW--------ELKQGGTLREAVLRAIPQ 151
Query: 194 LEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGA-----------------VSILKFDN 236
           L GAY  +     +P+ L+A + GSPL++G+  G                  + + + D 
Sbjct: 152 LRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDI 211
Query: 237 AK--GRNGGTYARP-ASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRL 293
           A+   R+   + +  A V+R      ++ +  +KG Y HYMQKEI+EQP ++  T+ GR+
Sbjct: 212 AEITRRSVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRI 271
Query: 294 IRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI 353
             G    ++   LG   D L  + +   I  + CGTSYN+ + +R   E L+ +P  +EI
Sbjct: 272 SHGQVDLSE---LGPNADEL--LSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEI 326
Query: 354 ASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGAL-CVGITNTVGSAIARKTH 412
           AS+   R++ + R    + +SQSGETADTL  L  + E G L  + I N  GS++ R++ 
Sbjct: 327 ASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESD 386
Query: 413 CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVRE 472
             +  NAG EIGVASTKA+T+Q+ V+ ML   +        +    I+ GL  LP+++ +
Sbjct: 387 LALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQ 446
Query: 473 VLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGP 532
           +L  D+ ++ LA+    +   L  GRG  Y  ALEGALK+KE++ +H+E   AGE+KHGP
Sbjct: 447 MLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGP 506
Query: 533 LALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEV 592
           LAL+D ++P++V+A  +    K +S I+++ AR G+L V   +   A      +  +IE+
Sbjct: 507 LALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQD--AGFVSSDNMHIIEM 564
Query: 593 PQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ 636
           P VE+ + P+   VPLQLLAYH+ +++G +VDQPRNLAKSVT +
Sbjct: 565 PHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 608

>pdb|1MOS|A Chain A, Isomerase Domain Of Glucosamine 6-phosphate Synthase Complexed With 2- Amino-2-deoxyglucitol 6-phosphate Length = 368

Iteration: 1
 Score =  281 bits (718), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/372 (40%), Positives = 228/372 (61%), Gaps = 8/372 (2%)
Query: 266 NKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFI 325
           +KG Y HYMQKEI+EQP ++  T+ GR+  G    ++   LG   D L  + +   I  +
Sbjct: 4   DKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSE---LGPNADEL--LSKVEHIQIL 58
Query: 326 GCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQA 385
            CGTSYN+ + +R   E L+ +P  +EIAS+   R++ + R    + +SQSGETADTL  
Sbjct: 59  ACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAG 118
Query: 386 LEYASENGAL-CVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALA 444
           L  + E G L  + I N  GS++ R++   +  NAG EIGVASTKA+T+Q+ V+ ML   
Sbjct: 119 LRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAK 178
Query: 445 IGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYAT 504
           +        +    I+ GL  LP+++ ++L  D+ ++ LA+    +   L  GRG  Y  
Sbjct: 179 LSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPI 238
Query: 505 ALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHA 564
           ALEGALK+KE++ +H+E   AGE+KHGPLAL+D ++P++V+A  +    K +S I+++ A
Sbjct: 239 ALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRA 298
Query: 565 RKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVD 624
           R G+L V   +   A      +  +IE+P VE+ + P+   VPLQLLAYH+ +++G +VD
Sbjct: 299 RGGQLYVFADQD--AGFVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVD 356
Query: 625 QPRNLAKSVTTQ 636
           QPRNLAKSVT +
Sbjct: 357 QPRNLAKSVTVE 368

>pdb|3TBF|A Chain A, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate Aminotransferase From Francisella Tularensis. Length = 372

Iteration: 1
 Score =  245 bits (625), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 141/376 (37%), Positives = 218/376 (57%), Gaps = 14/376 (3%)
Query: 266 NKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI-RRSRRIVF 324
           +K  Y+HY  KEI+EQPE+++ T+   L  G       + L       K +  +++ I  
Sbjct: 6   SKDGYKHYXLKEIYEQPEAVSNTILASLADG------EISLDSFDKRAKELFEKTKHICI 59
Query: 325 IGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQ 384
           + CGTSYNA   A+  +E+ + +P ++EIAS++  R   +      V +SQSGETADTL+
Sbjct: 60  VACGTSYNAGXTAKYWIEKYAKVPCSVEIASEIRYRDNVVVDGSLFVSISQSGETADTLE 119
Query: 385 ALEYASEN---GALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAML 441
           +L  + +    G+ C  I N   S++ R++       AG EIGVASTKA+T+Q+V +A+ 
Sbjct: 120 SLRKSKKQNYVGSXC--ICNVPNSSLVRESDIAFXTKAGVEIGVASTKAFTTQLVALAIF 177
Query: 442 ALAIGGDTIS-TQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGY 500
            L I     S T  +     + L ++   V   LKLD E+  +++    ++  +  GRG 
Sbjct: 178 TLVIAKLKNSLTDQQIAKYTEELKNIRALVXGALKLDTEIDQISEYFSDKEHTIFLGRGL 237
Query: 501 NYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQ 560
            Y  A+EGALK+KE++ +H+E   +GE+KHGPLALVD+N PI+ +   D    K  S +Q
Sbjct: 238 YYPIAIEGALKLKEISYIHAEAYPSGELKHGPLALVDKNXPIVAVVPNDELLDKTLSNLQ 297
Query: 561 QLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRG 620
           ++HAR G+LI+   K     +    S  V+E+    D   PV+  +PLQLL+YH+ +++G
Sbjct: 298 EVHARGGKLILFVDKAVKERVNFDNSI-VLELDAGHDFSAPVVFTIPLQLLSYHVAIIKG 356
Query: 621 YNVDQPRNLAKSVTTQ 636
            +VDQPRNLAKSVT +
Sbjct: 357 TDVDQPRNLAKSVTVE 372

>pdb|1XFF|A Chain A, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase Complexed With Glutamate Length = 240

Iteration: 1
 Score =  132 bits (331), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 113/228 (49%), Gaps = 45/228 (19%)
Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDXXXXXXXXXXXXXVNGC 61
           CGI   +       +R + ++L  GLRRLEYRGYDSAG+ + D                 
Sbjct: 1   CGIVGAI------AQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTR---------- 44
Query: 62  PPLVFRQEGNIESLVKSVYXXXXXXXXXXXXSFSIHAG--IAHTRWATHGEPAPRNSHPQ 119
                R+ G ++ L ++                 +H G  IAHTRWATHGEP+  N+HP 
Sbjct: 45  ----LRRLGKVQMLAQAA------------EEHPLHGGTGIAHTRWATHGEPSEVNAHPH 88
Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQ 179
            S      +VVHNG+I N+E L+E L   G+TF SETDTEVI  L  +        E  Q
Sbjct: 89  VS---EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNW--------ELKQ 137
Query: 180 PVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG 227
             T  + V+  +  L GAY  +     +P+ L+A + GSPL++G+  G
Sbjct: 138 GGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMG 185

>pdb|3FJ1|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase (Yp_167080.1) From Silicibacter Pomeroyi Dss-3 At 1.75 A Resolution Length = 344

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 122/265 (46%), Gaps = 21/265 (7%)
Query: 373 VSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAY- 431
           VSQSG++ D +     A  +GALCV +TN   S +A  +   + I+AG E+ VA+TK + 
Sbjct: 98  VSQSGKSPDIVAXTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGPELSVAATKTFV 157
Query: 432 TSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQ 491
           TS +  + +LA           A  + +   L +LP  +    ++D     +A  + A  
Sbjct: 158 TSAVAGLXLLA---------DWAEDDGLRAALGNLPETLAAASRIDWPEXRVA--IGARP 206
Query: 492 SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDAC 551
           SL   GRG + A + E ALK KE   +H+E   + E+ HGP+++V+E  P+L  A  DA 
Sbjct: 207 SLFTLGRGTSLAVSNEAALKFKETCQLHAESYSSAEVLHGPVSIVEEGFPVLGFAAGDAA 266
Query: 552 FSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIE-VPQVEDCLQPVINIVPLQL 610
            +    +  Q+ A+   +     +   A        RV+E V        P+  IV    
Sbjct: 267 EAPLAEIADQIAAKGATVFATTGRVTRA--------RVLEHVRSGHALTDPLSLIVSFYS 318
Query: 611 LAYHLTVLRGYNVDQPRNLAKSVTT 635
                   RG + D PR+L K   T
Sbjct: 319 XVEAFASERGIDPDAPRHLNKVTET 343

>pdb|3HBA|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase (Sden_2705) From Shewanella Denitrificans Os217 At 2.00 A Resolution Length = 334

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 35/266 (13%)
Query: 318 RSRRIVFIGCGTSYNAALAARPILEELSDLPV-------------TMEIASDLVDRQAPI 364
           + + +  +G G+S +A + A+ + E  + +P              T+++A  LV      
Sbjct: 41  KPKFVXIVGRGSSDHAGVFAKYLFEIEASIPTFAAAPSVASVYGKTLKLAGGLV------ 94
Query: 365 YREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIG 424
                 + +SQSG + D L     A   GA CV + N   + I       + + AG E  
Sbjct: 95  ------IVISQSGRSPDILAQARXAKNAGAFCVALVNDETAPIKDIVDVVIPLRAGEEKA 148
Query: 425 VASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLA 484
           VA+TK+Y + +  +  +A        +   + E++++ +  LP  ++  +  D E ++ A
Sbjct: 149 VAATKSYLATLSALLQVA--------AKWTQNESLVEAVNSLPQALQAAV--DAEPQLRA 198
Query: 485 KQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILV 544
             L   ++L+V GRG+ YA + E ALK+KEV  +H+E   + E  HGP+ LV++ L IL 
Sbjct: 199 GSLTDVKNLVVLGRGFGYAVSKEIALKLKEVCAIHAEAFSSAEFLHGPVTLVEKKLSILD 258
Query: 545 IATRDACFSKQQSVIQQLHARKGRLI 570
           +  RD  +      I  +  R   LI
Sbjct: 259 VCIRDESYGSHVEQIANVKQRGANLI 284

>pdb|2CB0|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase From Pyrococcus Furiosus Length = 333

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 149/320 (46%), Gaps = 26/320 (8%)
Query: 316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVS 374
           IR  RRI+++GCG+S+  A     +        V +  +  L  ++A PI + +  V +S
Sbjct: 28  IRLPRRILYLGCGSSHFLAKLLAXVTNXHGGTGVALPCSEFLYSKEAYPIGKPELVVGIS 87
Query: 375 QSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTS- 433
           +SGET + L ALE  +      +GI+    S++ R     + +    E  V  T ++T+ 
Sbjct: 88  RSGETTEVLLALEKINTPK---LGIS-AYESSLTRACDYSLVVPTIEE-SVVXTHSFTAF 142
Query: 434 QIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSL 493
               + +L  + G   +      +A    L +  N ++E+++ D +           Q++
Sbjct: 143 YFAYLQLLRHSYGLPLLEATEVAKATEKAL-EYENYIKEIVE-DFDF----------QNV 190
Query: 494 LVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFS 553
           +  G G  Y  ALE +LK KE A+  SE     E++HG  A+ DEN   LV+      F 
Sbjct: 191 IFLGSGLLYPVALEASLKXKEXAIFWSEAYPTFEVRHGFKAIADEN--TLVVLXAQELFE 248
Query: 554 KQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAY 613
             + ++ +   ++ R++++ +          G    IEVP++     P+  +  +QLL+Y
Sbjct: 249 WHKKLVNEFKGQRARVLLISNSQQEF-----GQDYSIEVPRLSKDATPIPYLPVVQLLSY 303
Query: 614 HLTVLRGYNVDQPRNLAKSV 633
           +  V RG N D PR L K V
Sbjct: 304 YKAVARGLNPDNPRFLDKVV 323

>pdb|2DEC|A Chain A, Crystal Structure Of The Ph0510 Protein From Pyrococcus Horikoshii Ot3 Length = 325

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 156/339 (46%), Gaps = 30/339 (8%)
Query: 297 GSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASD 356
           G  KA  V    +KD    I    RI+++GCG+S+  +     +      L + +  +  
Sbjct: 13  GIIKADKVF-NKVKDK---ISLPNRILYLGCGSSHFLSKLLAMVTNMHGGLGIALPCSEF 68
Query: 357 LVDRQA-PIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGV 415
           L  ++  PI   + AV +S+SGET + L ALE  +      +GIT T  S++ R     +
Sbjct: 69  LYSKETYPIGEVELAVGISRSGETTEILLALEKINVKK---LGIT-TRESSLTRMCDYSL 124
Query: 416 HINAGAEIGVASTKAYTS-QIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVL 474
            + A  E  V  T ++TS     + +L  + G   ++     +A    L +    +RE++
Sbjct: 125 VVPAIEE-SVVMTHSFTSFYFAYLQLLRYSYGLPPLNAGEISKATEKSL-EYERYIREIV 182
Query: 475 KLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLA 534
                      +    Q+++  G G  Y  ALE +LK+KE+++  SE     E++HG  A
Sbjct: 183 -----------ESFDFQNIIFLGSGLLYPVALEASLKMKEMSIFWSEAYPTFEVRHGFKA 231
Query: 535 LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQ 594
           + DE    LV+   +  F   + ++++   +  +++V+ +          G    IE+P+
Sbjct: 232 IADEK--TLVVLMVEEPFEWHEKLVKEFKNQGAKVLVISNSPQDL-----GQDYSIELPR 284
Query: 595 VEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSV 633
           +     P+  +  +QLL+Y+  V RG N D PR L K V
Sbjct: 285 LSKDANPIPYLPIVQLLSYYKAVSRGLNPDNPRFLDKVV 323

>pdb|1J5X|A Chain A, Crystal Structure Of Glucosamine-6-Phosphate Deaminase (Tm0813) From Thermotoga Maritima At 1.8 A Resolution Length = 342

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 135/314 (42%), Gaps = 30/314 (9%)
Query: 322 IVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFV-SQSGETA 380
           ++F+GCG+SYN AL      E +  +      A ++  ++ P   E    F+ S++G T 
Sbjct: 55  VLFVGCGSSYNLALTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTT 114
Query: 381 DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAM 440
           + L A +   +     +GIT    S +A+++   +      E  +  TK+++  ++ +  
Sbjct: 115 EVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPVREE-AIVXTKSFSXILLSLXF 173
Query: 441 LALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVF-GRG 499
           LA  I G++           +   +L     E    D   KV+ K  + E    VF G  
Sbjct: 174 LADKIAGNST----------ERFSELVGYSPEFF--DISWKVIEKIDLKEHDHFVFLGXS 221
Query: 500 YNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVI 559
             +  +LE ALK  E +L  SE     E +HGP ALV +    LV   + +   +Q+  +
Sbjct: 222 EFFGVSLESALKCIEXSLTFSEAYSTLEYRHGPKALVKKG--TLVFXQKVSGXDEQEKRL 279
Query: 560 QQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLR 619
           ++     G  ++   +G              ++P   D     +  VP Q+L Y   + R
Sbjct: 280 RKELESLGATVLEVGEGG-------------DIPVSNDWKSAFLRTVPAQILGYQKAISR 326
Query: 620 GYNVDQPRNLAKSV 633
           G + D+P +L K+V
Sbjct: 327 GISPDKPPHLEKTV 340

>pdb|3G68|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase (cd3275) From Clostridium Difficile 630 At 1.80 A Resolution Length = 352

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 134/314 (42%), Gaps = 15/314 (4%)
Query: 320 RRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVF-VSQSGE 378
           ++I+  G GTSY++ +  +P L+ L D+ V       + +       E+T V  VSQ G 
Sbjct: 35  KKIIITGSGTSYHSGVQVQPYLQNLLDIDVVKXYPFXITEDTFKFDNENTLVVGVSQGGS 94
Query: 379 TADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVM 438
           +  T  A + A + G           + I   +   + +N G E   A TK Y    + +
Sbjct: 95  SYSTYNAXKLAEDKGCKIASXAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNL 154
Query: 439 AMLALAIGGDT--ISTQARREAIIDGLCDLPNKVREVLKLD-QEMKVLAKQLIAEQSLLV 495
            +L L I  +   IS++   E  I+ + D  N+   V KL  Q ++   ++L+  + + +
Sbjct: 155 XLLGLQIAREKGIISSEKYNEE-INKILDAINRFEAVYKLSKQWIERNKEKLVNSKEIRI 213
Query: 496 FGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQ 555
            G    Y   LE ALK+ E   +   G    E  HG    ++ +  I ++ T      K+
Sbjct: 214 IGHSDIYGDTLEAALKLLETXRIPVTGYEFEEFIHGIYNAINSDSTIFILDT-----GKE 268
Query: 556 QSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVIN-IVPLQLLAYH 614
             V + +    G    + + G   +     + + +++   ++      N IVP+QL+   
Sbjct: 269 PRVTKXIDVLSGWTENVFAIGRDVT----ENDKNLKIDITDNPYYQTFNFIVPIQLICGE 324
Query: 615 LTVLRGYNVDQPRN 628
           +  LRG +   P++
Sbjct: 325 IPTLRGVDPSVPKD 338

>pdb|3EUA|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase (Bsu32610) From Bacillus Subtilis At 1.90 A Resolution Length = 329

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 12/233 (5%)
Query: 322 IVFIGCGTSYNAALAARPILE-ELSDLPVTMEIASDLVDRQAPIYREDTAVFV-SQSGET 379
           + F+ CG S      ++ + + E   +   +  A++ + R      E + V + S SG T
Sbjct: 28  VFFVACGGSSAIXYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNT 87
Query: 380 ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE-IGVASTKAYTSQIVVM 438
            +T++A  +A   GAL +  T    S +A++       + G E + + +      QIV  
Sbjct: 88  PETVKAAAFARGKGALTIAXTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVLYQIVFG 147
Query: 439 AMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQE-MKVLAKQLIAEQSLLVFG 497
            +  L           + E  I+GL  L     + LK + +  K  AK    E  +    
Sbjct: 148 TLQVL-------ENNTKFEQAIEGLDQLQAVYEKALKQEADNAKQFAKAHEKESIIYTXA 200
Query: 498 RGYNYATALEGALKV-KEVALMHSEGILAGEMKHGPLALVDENLPILVIATRD 549
            G NY  A   ++ +  E   +HS  I AGE  HGP  ++DE++P +++   D
Sbjct: 201 SGANYGVAYSYSICILXEXQWIHSHAIHAGEYFHGPFEIIDESVPFIILLGLD 253

>pdb|2AML|A Chain A, Crystal Structure Of Lmo0035 Protein (46906266) From Listeria Monocytogenes 4b F2365 At 1.50 A Resolution Length = 373

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 130/309 (42%), Gaps = 17/309 (5%)
Query: 319 SRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGE 378
           ++  + +  G+S NAA +A+  +E L+D+ +T+E   + +  +      D  + +SQSG+
Sbjct: 50  AKEWLILATGSSLNAAQSAKYYIENLADVRITIEEPFNHLYYEKLSSHLDLVIGISQSGQ 109
Query: 379 TADTLQALEYASENGAL-CVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVV 437
           +  T+ ALE   +  ++  V +T+ V S IA      + I +G E     TK +T+ ++ 
Sbjct: 110 STSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLT 169
Query: 438 MAMLALAIGGDTISTQARR-----EAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQS 492
           + +  L     T+     R      A    +  +P  + E     +  +   ++      
Sbjct: 170 LXLTGLHFAYKTVQIDETRFNNEISAFSRAIDAIPATIAETEAFYERWQ---EEFATAPK 226
Query: 493 LLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF 552
               G G    T  E   K  E   + S+G+      HGP   V+    I  + T  A  
Sbjct: 227 FTAIGYGPTVGTCKEFETKFSETVRVPSQGLDLEAFXHGPYLEVNPQHRIFFLETASAV- 285
Query: 553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQ-PVINIVPLQLL 611
           +++  +++   ++          G       G   R + +P   D  Q P + I+P Q+L
Sbjct: 286 TERLVLLRDYESKYTPFTYTVKFGK------GEDDRTLVIPTDLDEYQAPFLXILPFQIL 339
Query: 612 AYHLTVLRG 620
           A+H+  L+G
Sbjct: 340 AHHIAELKG 348

>pdb|3FKJ|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase (Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A Resolution Length = 347

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/256 (20%), Positives = 105/256 (41%), Gaps = 13/256 (5%)
Query: 321 RIVFIGCGTSYNAALAARPILE-ELSDLPVTMEIASDLVDRQAPIYREDTAVFV-SQSGE 378
           R+ F+GCG S       +  L+ E S L V    +++ V        +++ V + SQ G 
Sbjct: 42  RVWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGN 101
Query: 379 TADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG---AEIGVASTKAYTSQI 435
           TA+T+ A   A E GA  +G+     + +   +   +          +  A  KA  S  
Sbjct: 102 TAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLW 161
Query: 436 VVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQE-MKVLAKQLIAEQSLL 494
           + + +LA   G       A+ + ++       + V    +  QE  +  A +   E+ + 
Sbjct: 162 LALEILAQTEG------YAQYDELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVY 215
Query: 495 VFGRGYNYATALEGALKV-KEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFS 553
             G G ++  A + ++ +  E   ++S  I +GE  HGP  + +   P +++ +      
Sbjct: 216 XXGSGPSFGAAHQESICILLEXQWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRP 275
Query: 554 KQQSVIQQLHARKGRL 569
                I+ +   +G+L
Sbjct: 276 LDDRAIRFIERYQGKL 291

>pdb|3KNZ|A Chain A, Crystal Structure Of Putative Sugar Binding Protein (Np_459565.1) From Salmonella Typhimurium Lt2 At 2.50 A Resolution Length = 366

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 47/117 (40%)
Query: 315 TIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVS 374
           T R   RI+  G GTSY+ AL AR   +    LPV +     L D       +   V +S
Sbjct: 46  TERGVTRIILTGSGTSYHGALTARTFXQRWCALPVDVCWPFXLDDETLARSGKALVVGIS 105
Query: 375 QSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAY 431
           Q G +  TL A E A   G +         + I R     + +  G E   A TK Y
Sbjct: 106 QGGGSLSTLAAXERARNVGHITASXAGVAPATIDRAADYILTVPCGEETAGAKTKGY 162

>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine Biosynthesis Length = 465

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 91/257 (35%), Gaps = 61/257 (23%)
Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDXXXXXXXXXXXXXVNGC 61
           CG+F    +          Q+ + GL  L++RG + AGI   D               G 
Sbjct: 1   CGVFGIWGH------EEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKG-----QGL 49
Query: 62  PPLVFRQEGNIESLVKSVYXXXXXXXXXXXXSFSIHAGIAHTRWATHGEPAPRNSHP--- 118
              VF Q G + S VK                      I H R+AT G     N  P   
Sbjct: 50  ITEVF-QNGEL-SKVKG------------------KGAIGHVRYATAGGGGYENVQPLLF 89
Query: 119 --QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEE 176
             Q +G+     + HNG + N   LK+ L   G  F++ +DTEV+  L K          
Sbjct: 90  RSQNNGS---LALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKR--------- 137
Query: 177 GDQPVTFSQVVVEVMRHLEGAYALIFKSQHY------PNELIACKRGSPLLLGVKDGAVS 230
                T    +   +  L+GAYA +  ++        PN L       PL +G+   A  
Sbjct: 138 -SGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGL------RPLSIGMMGDAYV 190
Query: 231 ILKFDNAKGRNGGTYAR 247
           +     A    G TY R
Sbjct: 191 VASETCAFDVVGATYLR 207

>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp) Amidotransferase From B. Subtilis Complexed With Adp And Gmp Length = 459

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 91/257 (35%), Gaps = 61/257 (23%)
Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDXXXXXXXXXXXXXVNGC 61
           CG+F    +          Q+ + GL  L++RG + AGI   D               G 
Sbjct: 1   CGVFGIWGH------EEAPQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKG-----QGL 49
Query: 62  PPLVFRQEGNIESLVKSVYXXXXXXXXXXXXSFSIHAGIAHTRWATHGEPAPRNSHP--- 118
              VF Q G + S VK                      I H R+AT G     N  P   
Sbjct: 50  ITEVF-QNGEL-SKVKG------------------KGAIGHVRYATAGGGGYENVQPLLF 89
Query: 119 --QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEE 176
             Q +G+     + HNG + N   LK+ L   G  F++ +DTEV+  L K          
Sbjct: 90  RSQNNGS---LALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKR--------- 137
Query: 177 GDQPVTFSQVVVEVMRHLEGAYALIFKSQHY------PNELIACKRGSPLLLGVKDGAVS 230
                T    +   +  L+GAYA +  ++        PN L       PL +G+   A  
Sbjct: 138 -SGHFTLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGL------RPLSIGMMGDAYV 190
Query: 231 ILKFDNAKGRNGGTYAR 247
           +     A    G TY R
Sbjct: 191 VASETCAFDVVGATYLR 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	636
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	0.0
2zj3_A	375	Glucosamine--fructose-6-phosphate aminotransferase	0.0
2poc_A	367	D-fructose-6- PH, isomerase domain of glutamine-fr	0.0
3tbf_A	372	Glucosamine--fructose-6-phosphate aminotransferas	1e-161
1moq_A	368	Glucosamine 6-phosphate synthase; glutamine amidot	1e-160
3fj1_A	344	Putative phosphosugar isomerase; YP_167080.1, stru	1e-149
3knz_A	366	Putative sugar binding protein; structural genomic	1e-142
1j5x_A	342	Glucosamine-6-phosphate deaminase; structural geno	1e-141
3hba_A	334	Putative phosphosugar isomerase; structural genomi	1e-140
3fkj_A	347	Putative phosphosugar isomerases; structural genom	1e-137
3g68_A	352	Putative phosphosugar isomerase; SIS domain, doubl	1e-134
2aml_A	373	SIS domain protein; 46906266, LMO0035 protein, str	1e-130
2e5f_A	325	Hypothetical protein PH0510; structural genomics,	1e-123
3eua_A	329	Putative fructose-aminoacid-6-phosphate deglycase;	1e-116
2a3n_A	355	Putative glucosamine-fructose-6-phosphate aminotr;	1e-109
3odp_A	393	Putative tagatose-6-phosphate ketose/aldose isome;	1e-106
3i0z_A	389	Putative tagatose-6-phosphate ketose/aldose isome;	1e-104
3c3j_A	384	Putative tagatose-6-phosphate ketose/aldose isome;	1e-101
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	1e-60
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	1e-18
1te5_A	257	Conserved hypothetical protein; glutamine amidotra	2e-17
1tzb_A	302	Glucose-6-phosphate isomerase, conjectural; enzyme	4e-17
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	5e-14
3sho_A	187	Transcriptional regulator, RPIR family; structural	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3mdn_A	274	Glutamine aminotransferase class-II domain protei;	4e-11
3cvj_A	243	Putative phosphoheptose isomerase; rossman fold, 3	3e-08
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	1e-07
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	5e-06
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	3e-05
1jeo_A	180	MJ1247, hypothetical protein MJ1247; RUMP pathway,	7e-05
1nri_A	306	Hypothetical protein HI0754; structural genomics,	2e-04
3fxa_A	201	SIS domain protein; structural genomics, joint cen	2e-04
2xhz_A	183	KDSD, YRBH, arabinose 5-phosphate isomerase; lipop	6e-04
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	7e-04

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A* Length = 608

 Score =  649 bits (1678), Expect = 0.0
 Identities = 235/655 (35%), Positives = 349/655 (53%), Gaps = 71/655 (10%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGI   +       +R + ++L  GLRRLEYRGYDSAG+ + D+                
Sbjct: 1   CGIVGAIA------QRDVAEILLEGLRRLEYRGYDSAGLAVVDAE--------------G 40

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
                R+ G ++ L ++            E       GIAHTRWATHGEP+  N+HP  S
Sbjct: 41  HMTRLRRLGKVQMLAQAA----------EEHPLHGGTGIAHTRWATHGEPSEVNAHPHVS 90

Query: 122 GAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV 181
                 +VVHNG+I N+E L+E L   G+TF SETDTEVI  L           E  Q  
Sbjct: 91  E---HIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLV--------NWELKQGG 139

Query: 182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG-------AVSILKF 234
           T  + V+  +  L GAY  +     +P+ L+A + GSPL++G+  G        +++L  
Sbjct: 140 TLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPV 199

Query: 235 ----------DNAKGRNGG---TYARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQ 281
                     D A+             A V+R      ++ +  +KG Y HYMQKEI+EQ
Sbjct: 200 TRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQ 259

Query: 282 PESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI-RRSRRIVFIGCGTSYNAALAARPI 340
           P ++  T+ GR+  G       V L  L  +   +  +   I  + CGTSYN+ + +R  
Sbjct: 260 PNAIKNTLTGRISHG------QVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYW 313

Query: 341 LEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCV-GI 399
            E L+ +P  +EIAS+   R++ + R    + +SQSGETADTL  L  + E G L    I
Sbjct: 314 FESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAI 373

Query: 400 TNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAI 459
            N  GS++ R++   +  NAG EIGVASTKA+T+Q+ V+ ML   +        +    I
Sbjct: 374 CNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKGLDASIEHDI 433

Query: 460 IDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMH 519
           + GL  LP+++ ++L  D+ ++ LA+    +   L  GRG  Y  ALEGALK+KE++ +H
Sbjct: 434 VHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIH 493

Query: 520 SEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAA 579
           +E   AGE+KHGPLAL+D ++P++V+A  +    K +S I+++ AR G+L V   +    
Sbjct: 494 AEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGF 553

Query: 580 SIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVT 634
                 +  +IE+P VE+ + P+   VPLQLLAYH+ +++G +VDQPRNLAKSVT
Sbjct: 554 V--SSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVT 606

>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* Length = 375

 Score =  578 bits (1492), Expect = 0.0
 Identities = 215/377 (57%), Positives = 282/377 (74%), Gaps = 6/377 (1%)

Query: 258 LEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIR 317
                +QI KGN+  +MQKEI EQPES+  TMRGR+    +    +V LGGLKDH+K I+
Sbjct: 3   HHHHHQQIMKGNFSSFMQKEIFEQPESVVNTMRGRV----NFDDYTVNLGGLKDHIKEIQ 58

Query: 318 RSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSG 377
           R RR++ I CGTSY+A +A R +LEEL++LPV +E+ASD +DR  P++R+D   F+SQSG
Sbjct: 59  RCRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSG 118

Query: 378 ETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVV 437
           ETADTL  L Y  E GAL VGITNTVGS+I+R+T CGVHINAG EIGVASTKAYTSQ V 
Sbjct: 119 ETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVS 178

Query: 438 MAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFG 497
           + M AL +  D IS Q RR+ I+ GL  LP+ ++EVL +D E++ LA +L  ++S+L+ G
Sbjct: 179 LVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMG 238

Query: 498 RGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQS 557
           RGY+YAT LEGALK+KE+  MHSEGILAGE+KHGPLALVD+ +P+++I  RD  ++K Q+
Sbjct: 239 RGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQN 298

Query: 558 VIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTV 617
            +QQ+ AR+GR +V+C K D        + R I+VP   DCLQ +++++PLQLLA+HL V
Sbjct: 299 ALQQVVARQGRPVVICDKEDTE--TIKNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAV 356

Query: 618 LRGYNVDQPRNLAKSVT 634
           LRGY+VD PRNLAKSVT
Sbjct: 357 LRGYDVDFPRNLAKSVT 373

>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A* Length = 367

 Score =  569 bits (1468), Expect = 0.0
 Identities = 212/369 (57%), Positives = 281/369 (76%), Gaps = 6/369 (1%)

Query: 267 KGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIG 326
           KG Y+H+MQKEI EQP+S   TMRGR+      +   V LGGLK  L TIRR RRI+ I 
Sbjct: 2   KGPYKHFMQKEIFEQPDSAFNTMRGRI----DFENCVVTLGGLKSWLSTIRRCRRIIMIA 57

Query: 327 CGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQAL 386
           CGTSY++ LA R I EEL+++PV++E+ASD +DR++P++R+DT VFVSQSGETAD++ AL
Sbjct: 58  CGTSYHSCLATRSIFEELTEIPVSVELASDFLDRRSPVFRDDTCVFVSQSGETADSILAL 117

Query: 387 EYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIG 446
           +Y  E GAL VGI N+VGS+++R+THCGVHINAG EIGVASTKAYTSQ + + M AL++ 
Sbjct: 118 QYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGPEIGVASTKAYTSQYIALVMFALSLS 177

Query: 447 GDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAE-QSLLVFGRGYNYATA 505
            D+IS + R E II GL  +P ++++VLKL+ ++K L    + + +SLL+ GRGY +ATA
Sbjct: 178 NDSISRKGRHEEIIKGLQKIPEQIKQVLKLENKIKDLCNSSLNDQKSLLLLGRGYQFATA 237

Query: 506 LEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHAR 565
           LEGALK+KE++ MHSEG+LAGE+KHG LALVDE+LPI+  ATRD+ F K  S I+Q+ AR
Sbjct: 238 LEGALKIKEISYMHSEGVLAGELKHGILALVDEDLPIIAFATRDSLFPKVMSAIEQVTAR 297

Query: 566 KGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQ 625
            GR IV+C++GDA  I        +EVP+  DCLQ ++N++PLQL++Y L V RG +VD 
Sbjct: 298 DGRPIVICNEGDAI-ISNDKVHTTLEVPETVDCLQGLLNVIPLQLISYWLAVNRGIDVDF 356

Query: 626 PRNLAKSVT 634
           PRNLAKSVT
Sbjct: 357 PRNLAKSVT 365

>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp} Length = 372

 Score =  465 bits (1198), Expect = e-161
 Identities = 137/376 (36%), Positives = 219/376 (58%), Gaps = 12/376 (3%)

Query: 263 EQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI-RRSRR 321
              +K  Y+HYM KEI+EQPE+++ T+   L  G       + L       K +  +++ 
Sbjct: 3   SSASKDGYKHYMLKEIYEQPEAVSNTILASLADG------EISLDSFDKRAKELFEKTKH 56

Query: 322 IVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD 381
           I  + CGTSYNA + A+  +E+ + +P ++EIAS++  R   +      V +SQSGETAD
Sbjct: 57  ICIVACGTSYNAGMTAKYWIEKYAKVPCSVEIASEIRYRDNVVVDGSLFVSISQSGETAD 116

Query: 382 TLQALEYASENGALCV-GITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAM 440
           TL++L  + +   +    I N   S++ R++       AG EIGVASTKA+T+Q+V +A+
Sbjct: 117 TLESLRKSKKQNYVGSMCICNVPNSSLVRESDIAFMTKAGVEIGVASTKAFTTQLVALAI 176

Query: 441 LALAIGGD--TISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGR 498
             L I     +++   +     + L ++   V   LKLD E+  +++    ++  +  GR
Sbjct: 177 FTLVIAKLKNSLT-DQQIAKYTEELKNIRALVMGALKLDTEIDQISEYFSDKEHTIFLGR 235

Query: 499 GYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSV 558
           G  Y  A+EGALK+KE++ +H+E   +GE+KHGPLALVD+N+PI+ +   D    K  S 
Sbjct: 236 GLYYPIAIEGALKLKEISYIHAEAYPSGELKHGPLALVDKNMPIVAVVPNDELLDKTLSN 295

Query: 559 IQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVL 618
           +Q++HAR G+LI+   K     +    +  V+E+    D   PV+  +PLQLL+YH+ ++
Sbjct: 296 LQEVHARGGKLILFVDKAVKERV-NFDNSIVLELDAGHDFSAPVVFTIPLQLLSYHVAII 354

Query: 619 RGYNVDQPRNLAKSVT 634
           +G +VDQPRNLAKSVT
Sbjct: 355 KGTDVDQPRNLAKSVT 370

>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A* Length = 368

 Score =  463 bits (1195), Expect = e-160
 Identities = 148/374 (39%), Positives = 224/374 (59%), Gaps = 10/374 (2%)

Query: 263 EQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI-RRSRR 321
           +  +KG Y HYMQKEI+EQP ++  T+ GR+  G       V L  L  +   +  +   
Sbjct: 1   DAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHG------QVDLSELGPNADELLSKVEH 54

Query: 322 IVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD 381
           I  + CGTSYN+ + +R   E L+ +P  +EIAS+   R++ + R    + +SQSGETAD
Sbjct: 55  IQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETAD 114

Query: 382 TLQALEYASENGALCV-GITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAM 440
           TL  L  + E G L    I N  GS++ R++   +  NAG EIGVASTKA+T+Q+ V+ M
Sbjct: 115 TLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLM 174

Query: 441 LALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGY 500
           L   +        +    I+ GL  LP+++ ++L  D+ ++ LA+    +   L  GRG 
Sbjct: 175 LVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGD 234

Query: 501 NYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQ 560
            Y  ALEGALK+KE++ +H+E   AGE+KHGPLAL+D ++P++V+A  +    K +S I+
Sbjct: 235 QYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIE 294

Query: 561 QLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRG 620
           ++ AR G+L V   +          +  +IE+P VE+ + P+   VPLQLLAYH+ +++G
Sbjct: 295 EVRARGGQLYVFADQDAGFV--SSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKG 352

Query: 621 YNVDQPRNLAKSVT 634
            +VDQPRNLAKSVT
Sbjct: 353 TDVDQPRNLAKSVT 366

>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} Length = 344

 Score =  433 bits (1116), Expect = e-149
 Identities = 92/370 (24%), Positives = 148/370 (40%), Gaps = 30/370 (8%)

Query: 267 KGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIG 326
              +   M++EI E PE++   +           A   L           R    +  + 
Sbjct: 2   MTQHITRMRREIDEIPEAVQRLLDHGAQDVARVAAVLRL-----------RDPSFVATVA 50

Query: 327 CGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDT-AVFVSQSGETADTLQA 385
            G+S +         E L  LPV     S      A +  +    + VSQSG++ D +  
Sbjct: 51  RGSSDHVCTYLSYAAELLLGLPVASLGPSVASVYDARLRLDRALCLAVSQSGKSPDIVAM 110

Query: 386 LEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAI 445
              A  +GALCV +TN   S +A  +   + I+AG E+ VA+TK + +  V   ML    
Sbjct: 111 TRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGPELSVAATKTFVTSAVAGLMLLADW 170

Query: 446 GGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATA 505
                   A  + +   L +LP  +    ++D     +   + A  SL   GRG + A +
Sbjct: 171 --------AEDDGLRAALGNLPETLAAASRIDWP--EMRVAIGARPSLFTLGRGTSLAVS 220

Query: 506 LEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHAR 565
            E ALK KE   +H+E   + E+ HGP+++V+E  P+L  A  DA  +    +  Q+ A+
Sbjct: 221 NEAALKFKETCQLHAESYSSAEVLHGPVSIVEEGFPVLGFAAGDAAEAPLAEIADQIAAK 280

Query: 566 KGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQ 625
              +     +   A         +  V        P+  IV    +       RG + D 
Sbjct: 281 GATVFATTGRVTRAR-------VLEHVRSGHALTDPLSLIVSFYSMVEAFASERGIDPDA 333

Query: 626 PRNLAKSVTT 635
           PR+L K VT 
Sbjct: 334 PRHLNK-VTE 342

>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp} Length = 366

 Score =  417 bits (1074), Expect = e-142
 Identities = 75/366 (20%), Positives = 131/366 (35%), Gaps = 25/366 (6%)

Query: 267 KGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIG 326
             ++E+   + ++E P  L   +                         T R   RI+  G
Sbjct: 9   HHHHENLYFQGMNETPLRLLEMLTQTREDLW-----------RAAQALTERGVTRIILTG 57

Query: 327 CGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQAL 386
            GTSY+ AL AR  ++    LPV +     L D       +   V +SQ G +  TL A+
Sbjct: 58  SGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAM 117

Query: 387 EYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIG 446
           E A   G +   +     + I R     + +  G E   A TK Y   ++ + +LALA+ 
Sbjct: 118 ERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVA 177

Query: 447 GD--TISTQARREAIIDGLCDLPNKVREVLK-LDQEMKVLAKQLIAEQSLLVFGRGYNYA 503
           G    +    +R +++  +    N +  ++       +  A  L     + + G    + 
Sbjct: 178 GQQQRLD-GEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFG 236

Query: 504 TALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLH 563
           T  EGALK+ E       G    E  HG     +    ++++  +      + + I    
Sbjct: 237 TVQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGEW 296

Query: 564 ARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-CLQPVINIVPLQLLAYHLTVLRGYN 622
                 I    + +            +  P V D        I+PLQ+L   L   +G N
Sbjct: 297 TPSIYRIGPQVENNGL---------NLNFPFVNDEDFAVFEYIIPLQMLCAILPPQKGIN 347

Query: 623 VDQPRN 628
              P++
Sbjct: 348 PAIPKD 353

>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1 Length = 342

 Score =  413 bits (1064), Expect = e-141
 Identities = 76/372 (20%), Positives = 148/372 (39%), Gaps = 40/372 (10%)

Query: 267 KGNYEHYMQ---KEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIV 323
             ++ H+M    KEI +Q   L       ++       K+ +   ++        +  ++
Sbjct: 6   IHHHHHHMSKTLKEITDQKNELKKFFENFVLNLE----KTEIFSEIQ-----KNLTDEVL 56

Query: 324 FIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDT-AVFVSQSGETADT 382
           F+GCG+SYN AL      E +  +      A ++  ++ P   E   A   S++G T + 
Sbjct: 57  FVGCGSSYNLALTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEV 116

Query: 383 LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLA 442
           L A +   +     +GIT    S +A+++   +      E  +  TK+++  ++ +  LA
Sbjct: 117 LLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPVR-EEAIVMTKSFSMILLSLMFLA 175

Query: 443 LAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNY 502
             I           E   + +   P       K+ +++      L      +  G    +
Sbjct: 176 DKIA------GNSTERFSELVGYSPEFFDISWKVIEKI-----DLKEHDHFVFLGMSEFF 224

Query: 503 ATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQL 562
             +LE ALK  E++L  SE     E +HGP ALV +   +  +        +++ + ++L
Sbjct: 225 GVSLESALKCIEMSLTFSEAYSTLEYRHGPKALVKKGTLV-FMQKVSGMDEQEKRLRKEL 283

Query: 563 HARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYN 622
            +    ++ +   GD              +P   D     +  VP Q+L Y   + RG +
Sbjct: 284 ESLGATVLEVGEGGD--------------IPVSNDWKSAFLRTVPAQILGYQKAISRGIS 329

Query: 623 VDQPRNLAKSVT 634
            D+P +L K+V 
Sbjct: 330 PDKPPHLEKTVV 341

>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217} Length = 334

 Score =  410 bits (1057), Expect = e-140
 Identities = 82/367 (22%), Positives = 150/367 (40%), Gaps = 39/367 (10%)

Query: 270 YEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGT 329
               M++E    P+ +   +        S       LG +    K     + ++ +G G+
Sbjct: 4   TNTIMEQEARTAPQKIAEQLLANDAITES-------LGSVLREFKP----KFVMIVGRGS 52

Query: 330 SYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDT-AVFVSQSGETADTLQALEY 388
           S +A + A+ + E  + +P      S        +       + +SQSG + D L     
Sbjct: 53  SDHAGVFAKYLFEIEASIPTFAAAPSVASVYGKTLKLAGGLVIVISQSGRSPDILAQARM 112

Query: 389 ASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGD 448
           A   GA CV + N   + I       + + AG E  VA+TK+Y + +  +  +A      
Sbjct: 113 AKNAGAFCVALVNDETAPIKDIVDVVIPLRAGEEKAVAATKSYLATLSALLQVAAKW--- 169

Query: 449 TISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEG 508
                 + E++++ +  LP  ++  +  + +++  A  L   ++L+V GRG+ YA + E 
Sbjct: 170 -----TQNESLVEAVNSLPQALQAAVDAEPQLR--AGSLTDVKNLVVLGRGFGYAVSKEI 222

Query: 509 ALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGR 568
           ALK+KEV  +H+E   + E  HGP+ LV++ L IL +  RD  +      I  +  R   
Sbjct: 223 ALKLKEVCAIHAEAFSSAEFLHGPVTLVEKKLSILDVCIRDESYGSHVEQIANVKQRGAN 282

Query: 569 LIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRN 628
           LI +                      +   + P+  +    +    + +  G N D+P  
Sbjct: 283 LIHLHQTSAD----------------IHPRIAPLALLQRFYIDVAAVAIALGINPDKPAG 326

Query: 629 LAKSVTT 635
           L K VT 
Sbjct: 327 LKK-VTQ 332

>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2} Length = 347

 Score =  402 bits (1036), Expect = e-137
 Identities = 62/372 (16%), Positives = 136/372 (36%), Gaps = 38/372 (10%)

Query: 267 KGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIG 326
              + H+  + ++ Q  S+      R+I                  +   +   R+ F+G
Sbjct: 4   DKIHHHHHHENLYFQGMSVAHENARRII----------------SDILGKQNIERVWFVG 47

Query: 327 CGTSYNAALAARPILE-ELSDLPVTMEIASDLVDRQAPIYREDT-AVFVSQSGETADTLQ 384
           CG S       +  L+ E S L V    +++ V        +++  +  SQ G TA+T+ 
Sbjct: 48  CGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNTAETVA 107

Query: 385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA---EIGVASTKAYTSQIVVMAML 441
           A   A E GA  +G+     + +   +   +          +  A  KA  S  + + +L
Sbjct: 108 AARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEIL 167

Query: 442 ALAIGGDTISTQARREAIIDGLCDLPNKVREVLK-LDQEMKVLAKQLIAEQSLLVFGRGY 500
           A   G       A+ + ++       + V    + + ++ +  A +   E+ + + G G 
Sbjct: 168 AQTEG------YAQYDELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVYMMGSGP 221

Query: 501 NYATA-LEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVI 559
           ++  A  E    + E+  ++S  I +GE  HGP  + +   P +++ +           I
Sbjct: 222 SFGAAHQESICILLEMQWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPLDDRAI 281

Query: 560 QQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLR 619
           + +   +G+L ++ +                    V +    +++   L +    L   R
Sbjct: 282 RFIERYQGKLQLIDADKLGIQDLS---------TDVGEYFCGLLHNCVLDVYNLALATAR 332

Query: 620 GYNVDQPRNLAK 631
            + +   R + K
Sbjct: 333 NHPLTTRRYMWK 344

>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile} Length = 352

 Score =  396 bits (1021), Expect = e-134
 Identities = 72/362 (19%), Positives = 140/362 (38%), Gaps = 30/362 (8%)

Query: 272 HYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSY 331
             +Q  + E P  +   +          K  ++               ++I+  G GTSY
Sbjct: 2   MTIQDYMLETPVRMREIISNADSLFNEVKRTNL---------------KKIIITGSGTSY 46

Query: 332 NAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDT-AVFVSQSGETADTLQALEYAS 390
           ++ +  +P L+ L D+ V       + +       E+T  V VSQ G +  T  A++ A 
Sbjct: 47  HSGVQVQPYLQNLLDIDVVKMYPFMITEDTFKFDNENTLVVGVSQGGSSYSTYNAMKLAE 106

Query: 391 ENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGD-- 448
           + G     +     + I   +   + +N G E   A TK Y    + + +L L I  +  
Sbjct: 107 DKGCKIASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQIAREKG 166

Query: 449 TISTQARREAIIDGLCDLPNKVREVLKLDQE-MKVLAKQLIAEQSLLVFGRGYNYATALE 507
            IS   +    I+ + D  N+   V KL ++ ++   ++L+  + + + G    Y   LE
Sbjct: 167 IIS-SEKYNEEINKILDAINRFEAVYKLSKQWIERNKEKLVNSKEIRIIGHSDIYGDTLE 225

Query: 508 GALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKG 567
            ALK+ E   +   G    E  HG    ++ +  I ++ T      +   +I  L     
Sbjct: 226 AALKLLETMRIPVTGYEFEEFIHGIYNAINSDSTIFILDTGKE--PRVTKMIDVLSGWTE 283

Query: 568 RLIVMCSKGDAASIFPGGSCRVIEVPQVED-CLQPVINIVPLQLLAYHLTVLRGYNVDQP 626
            +  +               + +++   ++   Q    IVP+QL+   +  LRG +   P
Sbjct: 284 NVFAIGRDVTEND-------KNLKIDITDNPYYQTFNFIVPIQLICGEIPTLRGVDPSVP 336

Query: 627 RN 628
           ++
Sbjct: 337 KD 338

>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes} Length = 373

 Score =  386 bits (994), Expect = e-130
 Identities = 69/372 (18%), Positives = 142/372 (38%), Gaps = 30/372 (8%)

Query: 267 KGNYEHY-----MQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRR 321
           K ++ H+     M   I+E+ E     +          ++                 ++ 
Sbjct: 5   KIHHHHHHMKPTMMTYINEEEEMCRVILADFQTNAEKLESL------------VKNGAKE 52

Query: 322 IVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD 381
            + +  G+S NAA +A+  +E L+D+ +T+E   + +  +      D  + +SQSG++  
Sbjct: 53  WLILATGSSLNAAQSAKYYIENLADVRITIEEPFNHLYYEKLSSHLDLVIGISQSGQSTS 112

Query: 382 TLQALEYASENGALCV-GITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAM 440
           T+ ALE   +  ++ V  +T+ V S IA      + I +G E     TK +T+ ++ + +
Sbjct: 113 TISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLML 172

Query: 441 LALAIGGD--TISTQARREAIIDGLCDLPNKVREVL-KLDQEMKVLAKQLIAEQSLLVFG 497
             L        I  + R    I       + +   + + +   +   ++          G
Sbjct: 173 TGLHFAYKTVQID-ETRFNNEISAFSRAIDAIPATIAETEAFYERWQEEFATAPKFTAIG 231

Query: 498 RGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQS 557
            G    T  E   K  E   + S+G+      HGP   V+    I  + T  A   +   
Sbjct: 232 YGPTVGTCKEFETKFSETVRVPSQGLDLEAFMHGPYLEVNPQHRIFFLETASAVTERLVL 291

Query: 558 VIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQ-VEDCLQPVINIVPLQLLAYHLT 616
            ++   ++          G           R + +P  +++   P + I+P Q+LA+H+ 
Sbjct: 292 -LRDYESKYTPFTYTVKFGKGEDD------RTLVIPTDLDEYQAPFLMILPFQILAHHIA 344

Query: 617 VLRGYNVDQPRN 628
            L+G  + +   
Sbjct: 345 ELKGNKLTERIY 356

>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A* Length = 325

 Score =  366 bits (942), Expect = e-123
 Identities = 78/360 (21%), Positives = 148/360 (41%), Gaps = 43/360 (11%)

Query: 276 KEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAAL 335
            EI + P+ +    +                  +KD +    R   I+++GCG+S+  + 
Sbjct: 5   IEIKQTPDGIIKADKV--------------FNKVKDKISLPNR---ILYLGCGSSHFLSK 47

Query: 336 AARPILEELSDLPVTMEIASDL--VDRQAPIYREDTAVFVSQSGETADTLQALEYASENG 393
               +      L + +   S+        PI   + AV +S+SGET + L ALE  +   
Sbjct: 48  LLAMVTNMHGGLGIALP-CSEFLYSKETYPIGEVELAVGISRSGETTEILLALEKINVKK 106

Query: 394 ALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQ 453
                   T  S++ R     + + A  E  V  T ++TS       L     G      
Sbjct: 107 LGI----TTRESSLTRMCDYSLVVPAI-EESVVMTHSFTSFYFAYLQLLRYSYGLPPLNA 161

Query: 454 ARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK 513
                       +     + L+ ++ ++ + +     Q+++  G G  Y  ALE +LK+K
Sbjct: 162 GE----------ISKATEKSLEYERYIREIVESFDF-QNIIFLGSGLLYPVALEASLKMK 210

Query: 514 EVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMC 573
           E+++  SE     E++HG  A+ DE   ++++      F   + ++++   +  +++V+ 
Sbjct: 211 EMSIFWSEAYPTFEVRHGFKAIADEKTLVVLMVEEP--FEWHEKLVKEFKNQGAKVLVIS 268

Query: 574 SKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSV 633
           +          G    IE+P++     P+  +  +QLL+Y+  V RG N D PR L K V
Sbjct: 269 NSPQDL-----GQDYSIELPRLSKDANPIPYLPIVQLLSYYKAVSRGLNPDNPRFLDKVV 323

>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} Length = 329

 Score =  350 bits (900), Expect = e-116
 Identities = 66/321 (20%), Positives = 127/321 (39%), Gaps = 21/321 (6%)

Query: 316 IRRSRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASDLVDRQ-APIYREDTAVFV 373
            +    + F+ CG S      ++ + +  S  +   +  A++ + R    +  +   +  
Sbjct: 22  GKTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILC 81

Query: 374 SQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE-IGVASTKAYT 432
           S SG T +T++A  +A   GAL + +T    S +A++       + G E + + +     
Sbjct: 82  SHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVL 141

Query: 433 SQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQE-MKVLAKQLIAEQ 491
            QIV   +  L           + E  I+GL  L     + LK + +  K  AK    E 
Sbjct: 142 YQIVFGTLQVLE-------NNTKFEQAIEGLDQLQAVYEKALKQEADNAKQFAKAHEKES 194

Query: 492 SLLVFGRGYNYATALEGAL-KVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDA 550
            +     G NY  A   ++  + E+  +HS  I AGE  HGP  ++DE++P +++   D 
Sbjct: 195 IIYTMASGANYGVAYSYSICILMEMQWIHSHAIHAGEYFHGPFEIIDESVPFIILLGLDE 254

Query: 551 CFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQL 610
               ++  +        +L V+ +     +              V+  L P++    L+ 
Sbjct: 255 TRPLEERALTFSKKYGKKLTVLDAASYDFTAI---------DDSVKGYLAPLVLNRVLRS 305

Query: 611 LAYHLTVLRGYNVDQPRNLAK 631
            A  L   R + +   R + K
Sbjct: 306 YADELAEERNHPLSHRRYMWK 326

>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium} Length = 355

 Score =  332 bits (853), Expect = e-109
 Identities = 60/364 (16%), Positives = 133/364 (36%), Gaps = 23/364 (6%)

Query: 267 KGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIG 326
           K ++ H+      ++   L       L       A       + D +        + F  
Sbjct: 5   KIHHHHHHMNN--QEKNMLGFNQDEYLTSAREIIAARQKAEQVADEIY-QAGFSSLFFAS 61

Query: 327 CGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDT-AVFVSQSGETADTLQA 385
            G S    +A     +EL+ LPV +E A++L+ +      +D+  + +S+SG+T +++  
Sbjct: 62  VGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKESVAI 121

Query: 386 LEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAI 445
            E+    G   V IT    S +A+         A   I +        + +++  L   +
Sbjct: 122 AEWCKAQGIRVVAITKNADSPLAQ--------AATWHIPMRHKNGVEYEYMLLYWLFFRV 173

Query: 446 GGDTISTQARREAIIDGLCDLPNKVREV-LKLDQEMKVLAKQLIAEQSLLVFGRGYNYA- 503
                   A  +     L  LP  + +   K D +   +A +      ++  G    +  
Sbjct: 174 LSRNN-EFASYDRFASQLEILPANLLKAKQKFDPQADAIASRYHNSDYMMWVGGAEMWGE 232

Query: 504 TALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLH 563
             L     ++E+    +  + + E  HG L L+++++P++++     C       +++  
Sbjct: 233 VYLFSMCILEEMQWKRTRPVSSAEFFHGALELLEKDVPLILVKGEGKC-RALDERVERFA 291

Query: 564 ARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNV 623
           ++    +V+      A    G       +         V++ + +  LA H     G+++
Sbjct: 292 SKITDNLVVIDPKAYA--LDGIDDEFRWIM-----APCVVSTLLVDRLAAHFEKYTGHSL 344

Query: 624 DQPR 627
           D  R
Sbjct: 345 DIRR 348

>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi} Length = 393

 Score =  327 bits (840), Expect = e-106
 Identities = 66/400 (16%), Positives = 145/400 (36%), Gaps = 49/400 (12%)

Query: 263 EQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRI 322
           E   K    +   KEI  QP+    T    L        +  L   L +  K  + + +I
Sbjct: 10  EDYLKERKGYITAKEICNQPKLWRETYEIIL------SQREKLKSFLDNFAK--KPNAKI 61

Query: 323 VFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDT----AVFVSQSGE 378
           V  G G+S     +    L    ++ +     +D+V      Y +       +  ++SG 
Sbjct: 62  VITGAGSSAFVGNSVVSYLNAKENIKIEAIATTDIVSHP-FYYLKKDEPTLLISCARSGN 120

Query: 379 TADTLQALEYASENGALC--VGITNTVGSAIARKTHCGVHI------NAGAEIGVASTKA 430
           + ++  A+  A +       + IT      +A       +           + G A T +
Sbjct: 121 SPESTAAVTLAEKIVDDISHLIITCNSEGKLALHAKRNYNSFLLLMPEESNDKGFAMTGS 180

Query: 431 YTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAE 490
           +++ ++   ++             + E+I   +  +  +  +VL  + E   L K+++ E
Sbjct: 181 FSTMLLSCLLIF---------NLDKLESIGKQIESISMQGEKVLVNNVE---LMKKIVGE 228

Query: 491 --QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGE--MKHGPLALVDENLPILVIA 546
             +  +  G    +  A E ALKV E+       +       +HGP +++D+   I++  
Sbjct: 229 KFKRTVYLGAANAFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKSIIDDETLIVIFF 288

Query: 547 TRDA-CFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE-----DCLQ 600
           + D      +  ++++++++ G   V+        +    S   I + + E     D   
Sbjct: 289 SNDTYAREYEYDLLKEVYSQNGNHKVLAISEYEDKLIEDNSDYFIAINKEEQEYEDDSFL 348

Query: 601 PVINIVPLQLLAYHLTVLRGYNVDQPRN------LAKSVT 634
            +  ++  Q+ A+  ++  G   D P        + K V 
Sbjct: 349 SLDYLLNAQMYAFINSMELGIGPDNPCPTGEVNRVVKGVI 388

>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4} Length = 389

 Score =  321 bits (825), Expect = e-104
 Identities = 63/406 (15%), Positives = 135/406 (33%), Gaps = 50/406 (12%)

Query: 256 SILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKT 315
            +L    E + +        +EI++QP+                 AK   +      +  
Sbjct: 1   GMLHYTKEDLLELGA-EITTREIYQQPDVWREAFEFYQ-------AKREEIAAFLQEIAD 52

Query: 316 IRRSRRIVFIGCGTSYNAALAARPILEELSD--------LPVTMEIASDLVDRQAPIYRE 367
                +++  G GTS        P  +E+ D        +  T  +A+     +      
Sbjct: 53  KHDYIKVILTGAGTSAYVGDTLLPYFKEVYDERKWNFNAIATTDIVANPATYLKKD--VA 110

Query: 368 DTAVFVSQSGETADTLQALEYASENGALC--VGITNTVGSAIARKTHCGVH------INA 419
              V  ++SG + ++L  ++ A         V IT      +A + H             
Sbjct: 111 TVLVSFARSGNSPESLATVDLAKSLVDELYQVTITCAADGKLALQAHGDDRNLLLLQPAV 170

Query: 420 GAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQE 479
             + G A T ++TS ++   ++                   +    + +  R+VL   ++
Sbjct: 171 SNDAGFAMTSSFTSMMLTTLLVFDP---------TEFAVKSERFEVVSSLARKVLDKAED 221

Query: 480 MKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGIL--AGEMKHGPLALVD 537
           +K L         ++  G G  +  A E  LK+ E+       +       +HGP +L++
Sbjct: 222 VKELVDLDF--NRVIYLGAGPFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKSLIN 279

Query: 538 ENLPILVIATRDACFSK-QQSVIQQLHARK--GRLIVMCSKGDAASIFPGGSCRVIEVPQ 594
           +N  +LV  T      K    +++++   +   R++++  +     +       +     
Sbjct: 280 DNTVVLVFGTTTDYTRKYDLDLVREVAGDQIARRVVLLSDQAFG--LENVKEVALGCGGV 337

Query: 595 VEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRN------LAKSVT 634
           + D  +    IV  QL A   ++      D P        + + V 
Sbjct: 338 LNDIYRVFPYIVYAQLFALLTSLKVENKPDTPSPTGTVNRVVQGVI 383

>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli} Length = 384

 Score =  313 bits (803), Expect = e-101
 Identities = 64/384 (16%), Positives = 129/384 (33%), Gaps = 51/384 (13%)

Query: 273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYN 332
           + ++EI  QP +   ++            +S L   L+  L+  + + RI+  G GTS  
Sbjct: 15  WTEEEIRHQPRAWIRSLTNID------ALRSALNNFLEPLLR--KENLRIILTGAGTSAF 66

Query: 333 AALAARPIL-----EELSDLPVTMEIASDLVDRQAPIYREDT----AVFVSQSGETADTL 383
                 P L     +  S +P T  + +         Y         +   +SG + +++
Sbjct: 67  IGDIIAPWLASHTGKNFSAVPTTDLVTNP--MD----YLNPAHPLLLISFGRSGNSPESV 120

Query: 384 QALEYASENGALCVGIT---NTVGSAIAR---KTHCGVHI--NAGAEIGVASTKAYTSQI 435
            A+E A++    C  +    N  G+         +    +      + G A T + T+ +
Sbjct: 121 AAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETHDRGFAMTSSITTMM 180

Query: 436 VVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLV 495
                +            A          D+ ++ + +L    +           + ++ 
Sbjct: 181 ASCLAVF-----------APETINSQTFRDVADRCQAILTSLGDFSEGVFGYAPWKRIVY 229

Query: 496 FGRGYNYATALEGALKVKEVALMHSEGIL--AGEMKHGPLALVDENLPILVIATRDA-CF 552
            G G     A E ALKV E+               +HGP +LVD+   ++V  +      
Sbjct: 230 LGSGGLQGAARESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHPYTR 289

Query: 553 SKQQSVIQQLHA--RKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQL 610
                ++ +L    +  R+I + ++     +  G    +       D  Q    ++  Q 
Sbjct: 290 QYDLDLLAELRRDNQAMRVIAIAAESSDI-VAAGPHIILPPSRHFIDVEQAFCFLMYAQT 348

Query: 611 LAYHLTVLRGYNVDQPRNLAKSVT 634
            A   ++  G   D P   + S T
Sbjct: 349 FALMQSLHMGNTPDTP---SASGT 369

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Length = 240

 Score =  201 bits (513), Expect = 1e-60
 Identities = 81/226 (35%), Positives = 112/226 (49%), Gaps = 41/226 (18%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGI   +       +R + ++L  GLRRLEYRGYDSAG+ + D+                
Sbjct: 1   CGIVGAIA------QRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGH------------- 41

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
                R+ G ++ L ++            E       GIAHTRWATHGEP+  N+HP  S
Sbjct: 42  -MTRLRRLGKVQMLAQAA----------EEHPLHGGTGIAHTRWATHGEPSEVNAHPHVS 90

Query: 122 GAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV 181
                 +VVHNG+I N+E L+E L   G+TF SETDTEVI  L           E  Q  
Sbjct: 91  E---HIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLV--------NWELKQGG 139

Query: 182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG 227
           T  + V+  +  L GAY  +     +P+ L+A + GSPL++G+  G
Sbjct: 140 TLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMG 185

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Length = 459

 Score = 87.9 bits (219), Expect = 1e-18
 Identities = 51/235 (21%), Positives = 82/235 (34%), Gaps = 55/235 (23%)

Query: 2   CGIFA-YLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           CG+F  + +    +       + + GL  L++RG + AGI                + +G
Sbjct: 1   CGVFGIWGHEEAPQ-------ITYYGLHSLQHRGQEGAGIV---------------ATDG 38

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHP-- 118
                 + +G    L+  V+         L         I H R+AT G     N  P  
Sbjct: 39  EKLTAHKGQG----LITEVF-----QNGELS-KVKGKGAIGHVRYATAGGGGYENVQPLL 88

Query: 119 QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGD 178
             S       + HNG + N   LK+ L   G  F++ +DTEV+  L              
Sbjct: 89  FRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLI------KRSGHFT 142

Query: 179 QPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACK-----RGSPLLLGVKDGA 228
                   +   +  L+GAYA +  +     E+I        R  PL +G+   A
Sbjct: 143 ----LKDQIKNSLSMLKGAYAFLIMT---ETEMIVALDPNGLR--PLSIGMMGDA 188

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 Length = 257

 Score = 81.7 bits (201), Expect = 2e-17
 Identities = 30/209 (14%), Positives = 53/209 (25%), Gaps = 44/209 (21%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSA------GICIDDSSSPSPLPSP 54
           MC +        N         +      L  RG  +       GI   +         P
Sbjct: 1   MCELLGMSA---NVPTD-----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDP 52

Query: 55  SSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPR 114
            +SV+        Q   I+S                         I H R A  G+    
Sbjct: 53  LASVD-SEVARLVQRFPIKS----------------------ETVIGHIRQANVGKVGLS 89

Query: 115 NSHP-QTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKAN 173
           N+HP      G  +   HNG + +++         G T       +++ ++ +   +   
Sbjct: 90  NTHPFIRELGGRYWTFAHNGQLADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVP 149

Query: 174 EEEGDQPVTFSQVVVEVMRHLEGAYALIF 202
            E          V++              
Sbjct: 150 VEVLL------PVLISACDEYRKKGVFNA 172

>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A* Length = 302

 Score = 81.5 bits (200), Expect = 4e-17
 Identities = 45/313 (14%), Positives = 92/313 (29%), Gaps = 43/313 (13%)

Query: 274 MQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNA 333
           + ++       +   +             S ++ G    ++ + R   +   G G S   
Sbjct: 4   LLQDYLNWENYILRRVD---------FPTSYVVEGEVVRIEAMPR---LYISGMGGSGVV 51

Query: 334 ALAARPILEELS-DLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASEN 392
           A   R      + ++ V       L        R+   + VS SG T +TL  +EYA   
Sbjct: 52  ADLIRDFSLTWNWEVEVIAVKDYFL------KARDGLLIAVSYSGNTIETLYTVEYAKRR 105

Query: 393 GALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIST 452
               V IT   G  +A+     V +   +    A  +  T+ + V+A +           
Sbjct: 106 RIPAVAITT--GGRLAQMGVPTVIVPKASAPRAALPQLLTAALHVVAKVYG--------- 154

Query: 453 QARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKV 512
                        +  K+ E L+   E  +       ++   +         A     + 
Sbjct: 155 -------------IDVKIPEGLEPPNEALIHKLVEEFQKRPTIIAAESMRGVAYRVKNEF 201

Query: 513 KEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVM 572
            E A +     +  E  H  +   +  +  L          ++     ++       + M
Sbjct: 202 NENAKIEPSVEILPEAHHNWIEGSERAVVALTSPHIPKEHQERVKATVEIVGGSIYAVEM 261

Query: 573 CSKGDAASIFPGG 585
             KG  + +   G
Sbjct: 262 HPKGVLSFLRDVG 274

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Length = 504

 Score = 73.7 bits (182), Expect = 5e-14
 Identities = 53/238 (22%), Positives = 91/238 (38%), Gaps = 51/238 (21%)

Query: 2   CGIFA-YLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           CGI        VN       Q +++ L  L++RG D+AGI   D+++             
Sbjct: 1   CGIVGIAGVMPVN-------QSIYDALTVLQHRGQDAAGIITIDANN------------- 40

Query: 61  CPPLVFRQE-GNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQ 119
                FR    N   LV  V+E      L        + GI H R+ T G  +   + P 
Sbjct: 41  ----CFRLRKAN--GLVSDVFEARHMQRL------QGNMGIGHVRYPTAGSSSASEAQPF 88

Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIR-HGFTFESETDTEVIPKLAKFVFDKANEEEGD 178
              +     + HNG +TN   L++ L         + +D+E++  +    F    +    
Sbjct: 89  YVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNI----FASELDNFRH 144

Query: 179 QPVTFSQV---VVEVMRHLEGAYALIFKSQHYPNELIACK-----RGSPLLLGVKDGA 228
            P+    +   +    R + GAYA +  +    + ++A +     R  PL+LG +D  
Sbjct: 145 YPLEADNIFAAIAATNRLIRGAYACV--AMIIGHGMVAFRDPNGIR--PLVLGKRDID 198

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus} Length = 187

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM--EIASDLVDRQAPIYREDTAVFV 373
           I R+  ++ +G G S   A+     L  L  +  T+  E  S L    A +   D  + V
Sbjct: 36  ICRADHVIVVGMGFSAAVAVFLGHGLNSL-GIRTTVLTEGGSTLTITLANLRPTDLMIGV 94

Query: 374 SQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTS 433
           S      DT+ AL  A+E G   + +T++  S  AR       + A    GV  + +   
Sbjct: 95  SVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPAR--IADHVLVAATR-GVGHSLSPVG 151

Query: 434 QIVVM----AMLALAIGGDTISTQARREAIID 461
            I V+    A +A+      ++     + +  
Sbjct: 152 LIAVVNLLLAEIAVREPERALAVLREVDRLYR 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 90/574 (15%), Positives = 166/574 (28%), Gaps = 195/574 (33%)

Query: 148 HGFTFE-SETD---TEVIPK-LAKFV--FDKANEEEGDQPVTFSQVVVEVMRHLEGAYAL 200
           H   FE  E      +++      FV  FD  + ++  + +  S+  ++   H       
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEID---H------- 53

Query: 201 IFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRNGGTYARPASVQRALSILEM 260
           I  S    + +    R    L          L    +K            VQ+       
Sbjct: 54  IIMS---KDAVSGTLR----LFW-------TLL---SKQEEM--------VQKF------ 82

Query: 261 EVEQINKGNYEHYMQKEIHEQPE--SLTTTM----RGRLIRGGSCKAK-SV----LLGGL 309
            VE++ + NY+  M   I  +    S+ T M    R RL       AK +V        L
Sbjct: 83  -VEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 310 KDHLKTIRRSRRIVF---IGCGTSYNAALAARP------------------------ILE 342
           +  L  +R ++ ++    +G G ++ A                              +LE
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 343 ELSDLPVTM--------EIASDLVDRQAPIYREDTAVFVSQSGETA----------DTLQ 384
            L  L   +        + +S++  R   I  E   +  S+  E                
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 385 ALEYASENGALC--------VGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIV 436
           A   +      C          +T+ + SA         H +         T        
Sbjct: 261 AFNLS------CKILLTTRFKQVTDFL-SAATTTHISLDHHSMTL------TPDEV---- 303

Query: 437 VMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLD-QEMKVLAKQLIAEQSLLV 495
             ++L   +       Q           DLP   REVL  + + + ++A+ +    +   
Sbjct: 304 -KSLLLKYLD---CRPQ-----------DLP---REVLTTNPRRLSIIAESIRDGLATWD 345

Query: 496 FGRGYNY---ATALEGALKVKEVALMHSEGILAGEMKH--GPLALVDENLPI----LVIA 546
             +  N     T +E +L V E            E +     L++   +  I    L + 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLE----------PAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 547 TRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSC--------------RVIEV 592
             D   S    V+ +LH     L+    K    SI P                   +++ 
Sbjct: 396 WFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDH 452

Query: 593 PQVEDCLQPVINIVPLQL-------LAYHLTVLR 619
             +        +++P  L       + +HL  + 
Sbjct: 453 YNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIE 485

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 43/368 (11%), Positives = 89/368 (24%), Gaps = 117/368 (31%)

Query: 66  FRQEGNIESLVKSVYEEVAETELNLEESFS------------IHAGIAHTRWAT----HG 109
            + E    S++  +Y E  +   N  + F+            +   +   R A      G
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 110 EPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTF--------ESETDTEVI 161
                       G+G  ++ +        +V     ++    F           +   V+
Sbjct: 158 VL----------GSGKTWVAL--------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 162 PKLAKF--VFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSP 219
             L K     D       D        +  +   L      + KS+ Y N L+       
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR----LLKSKPYENCLL------- 248

Query: 220 LLLGVKDGAVSILK-FD-------------NAKGRNGGTYARPASVQRALSILEMEVEQI 265
           +LL V++        F+                  +  T    +    ++++   EV+ +
Sbjct: 249 VLLNVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 266 NKGNYEHYMQKEIHEQPES------LTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRS 319
                  Y+     + P           ++    IR G     +            I  S
Sbjct: 307 ----LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 320 RRIVFIGCGTSYNAALAARPILEELSDLPVTM-EIASDLVDRQAPIYREDTAVFVSQSGE 378
                                L  L   P    ++   L      ++     +       
Sbjct: 363 ---------------------LNVLE--PAEYRKMFDRLS-----VFPPSAHI------- 387

Query: 379 TADTLQAL 386
               L  +
Sbjct: 388 PTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 29/207 (14%), Positives = 64/207 (30%), Gaps = 42/207 (20%)

Query: 456 REAIIDGL-C-DLPNKVREVLKLDQEMK-VLAKQLIAEQSLLVFG----RGYN-YATALE 507
            +A +D   C D+ +  + +L   +E+  ++  +     +L +F     +        +E
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 508 GAL---------KVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSV 558
             L          +K      S        +   L   ++      + +R   + K +  
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQA 143

Query: 559 IQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED----------------CLQPV 602
           + +L  R  + +++   G   S   G +   ++V                     C  P 
Sbjct: 144 LLEL--RPAKNVLID--GVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 603 INIVPLQLLAYHLTVLRGYNVDQPRNL 629
             +  LQ L Y +        D   N+
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNI 223

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 43/322 (13%), Positives = 89/322 (27%), Gaps = 123/322 (38%)

Query: 7   YLNYGVNRERRYILQVLFNGLRRLEYRG-YDSAGICIDDSSSPSPLPSPSSSVNGCPPLV 65
           + +   ++    I++   N L   EYR  +D   +                         
Sbjct: 347 WKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSV------------------------- 380

Query: 66  FRQEGNIESLVKSVY-----EEVAETELNL------------EESFSIHAGIAHTRWATH 108
           F    +I +++ S+      +      +N             E + SI +     +    
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 109 GEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFV 168
            E A                 +H  ++ +Y + K            ++D  + P L ++ 
Sbjct: 441 NEYA-----------------LHRSIVDHYNIPK----------TFDSDDLIPPYLDQYF 473

Query: 169 FDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGA 228
           +            +       +  HL+         +H   E +   R   + L   D  
Sbjct: 474 Y------------SH------IGHHLKNI-------EHP--ERMTLFR--MVFL---D-- 499

Query: 229 VSILKFDNAKGRNGGT-YARPASVQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTT 287
               +F   K R+  T +    S+   L  L+          Y+ Y+      + E L  
Sbjct: 500 ---FRFLEQKIRHDSTAWNASGSILNTLQQLK---------FYKPYICDN-DPKYERLVN 546

Query: 288 TMRGRLIRGGS----CKAKSVL 305
            +   L +        K   +L
Sbjct: 547 AILDFLPKIEENLICSKYTDLL 568

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Length = 274

 Score = 62.8 bits (152), Expect = 4e-11
 Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 27/167 (16%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           +C   AY   G       ++    + L        +       D                
Sbjct: 3   LCRWAAYH--GTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFG------------- 47

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELN-LEESFSIHAGIAHTRWATHGEPAPRNSHPQ 119
              + +        L + VY   ++  L  +         ++H R +T    +  N HP 
Sbjct: 48  ---VAWYDARPEPGLYRDVYPAWSDPNLRAVAHHVRSGLFLSHVRASTGSCISRNNCHPF 104

Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIRH-----GFTFESETDTEVI 161
                  +  +HNG +  +E  ++              +  TD+EV+
Sbjct: 105 A---ARRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVL 148

>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Length = 243

 Score = 54.0 bits (129), Expect = 3e-08
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 28/142 (19%)

Query: 314 KTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL---------------- 357
           + +    R    G G S+  A         L+ +   +     L                
Sbjct: 37  EAVMNGGRFYVFGSGHSHMIAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGL 96

Query: 358 ---VDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTH-- 412
                +   +  +D  + +S SG     ++    +   GA  + +T+   S      H  
Sbjct: 97  SKSYLKLHQVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKS 156

Query: 413 -------CGVHINAGAEIGVAS 427
                    V ++ GA +G A 
Sbjct: 157 GKKLYEYADVVLDNGAPVGDAG 178

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Length = 186

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 17/144 (11%)

Query: 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDL--PVTMEIASDLVDRQAP-IYREDT 369
              I  S +I   G G S    L A+     L  +     +     + +   P +   D 
Sbjct: 31  ADHILSSHQIFTAGAGRS---GLMAKSFAMRLMHMGFNAHI-----VGEILTPPLAEGDL 82

Query: 370 AVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE---IGVA 426
            +  S SGET   +     A     +   +T    S+I ++    + +    +    G  
Sbjct: 83  VIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSY 142

Query: 427 STKAYTSQIVVMAMLALAIGGDTI 450
            T      +    +L      D +
Sbjct: 143 KTIQPMGSLFEQTLLLF---YDAV 163

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Length = 503

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 6/36 (16%), Positives = 9/36 (25%)

Query: 129 VVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKL 164
               G + N   L               D E++  L
Sbjct: 53  AYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALL 88

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 28/165 (16%), Positives = 45/165 (27%), Gaps = 63/165 (38%)

Query: 1   MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNG 60
           + G+F      V        +      R + +RG D +GI   D                
Sbjct: 3   IFGVFDIKTDAVELR-----KKALELSRLMRHRGPDWSGIYASD---------------- 41

Query: 61  CPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSH-PQ 119
                                               +A +AH R +            P 
Sbjct: 42  ------------------------------------NAILAHERLSIVD---VNAGAQPL 62

Query: 120 TSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKL 164
            +      L V NG I N++ L+       + F++ +D EVI  L
Sbjct: 63  YNQQKTHVLAV-NGEIYNHQALRAEYGD-RYQFQTGSDCEVILAL 105

>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Length = 180

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 15/138 (10%)

Query: 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDL--PVTMEIASDLVDRQAP-IYREDT 369
           +  I ++++I   G G S       R     L  L           + +   P   ++D 
Sbjct: 34  IDRIIKAKKIFIFGVGRS---GYIGRCFAMRLMHLGFKSYF-----VGETTTPSYEKDDL 85

Query: 370 AVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTK 429
            + +S SG T   L   + A       + I    G+ +       + I    +       
Sbjct: 86  LILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVE--FADLTIPLEVKKSKYLPM 142

Query: 430 AYTSQIVVMAML-ALAIG 446
             T +   +  L  +   
Sbjct: 143 GTTFEETALIFLDLVIAE 160

>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3 Length = 306

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 24/156 (15%)

Query: 314 KTIRRSRRIVFIGCGTS-YNAALAARPILEELS---------------DLPVTMEIASDL 357
           +  ++  R+++IG GTS     L A                        +   +E A D 
Sbjct: 66  QAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDN 125

Query: 358 VD------RQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKT 411
                   +     + D  V ++ SG T   +  L+YA   GAL + I +   S +A   
Sbjct: 126 TKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIA 185

Query: 412 HCGVHINAGAEI--GVASTKAYTSQIVVMAMLALAI 445
              +    G EI  G +  K+ T+Q +V+ ML  A 
Sbjct: 186 DIAIETIVGPEILTGSSRLKSGTAQKMVLNMLTTAS 221

>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str} Length = 201

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 364 IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE- 422
           + +ED  + +S+ G T + L  +      G+  +G+T    S IA+     +        
Sbjct: 90  LQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAK--EADIFFPVSVSK 147

Query: 423 ----IGVASTKAYTSQIVVMAML-ALAI 445
                 + +T    S + V+A   A+ +
Sbjct: 148 EPDPFNMLAT---ASTMAVIASFDAVIV 172

>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli} Length = 183

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 364 IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE- 422
           +  +D  + +S SGE+++    +          + IT    S++AR     VH+      
Sbjct: 94  VTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMAR--AADVHLCVKVAK 151

Query: 423 ----IGVASTKAYTSQIVVMAML-ALAI 445
               +G+A T   +S    + M  ALA+
Sbjct: 152 EACPLGLAPT---SSTTATLVMGDALAV 176

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Length = 513

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 8/72 (11%)

Query: 97  HAGIAHTRWATHGEPAPRNSHPQTSGA----GNEFLVVHNGVITNYEVLKETLIRHGFTF 152
                    A        +  P  + A    G     V  G I N + L   L       
Sbjct: 38  DTPQGERSLAATL-VHAPSVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVL---PAGP 93

Query: 153 ESETDTEVIPKL 164
             E D E++ +L
Sbjct: 94  APEGDAELVLRL 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	636
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	100.0
3tbf_A	372	Glucosamine--fructose-6-phosphate aminotransferas	100.0
2zj3_A	375	Glucosamine--fructose-6-phosphate aminotransferase	100.0
2poc_A	367	D-fructose-6- PH, isomerase domain of glutamine-fr	100.0
1moq_A	368	Glucosamine 6-phosphate synthase; glutamine amidot	100.0
3fj1_A	344	Putative phosphosugar isomerase; YP_167080.1, stru	100.0
3hba_A	334	Putative phosphosugar isomerase; structural genomi	100.0
3g68_A	352	Putative phosphosugar isomerase; SIS domain, doubl	100.0
2aml_A	373	SIS domain protein; 46906266, LMO0035 protein, str	100.0
3knz_A	366	Putative sugar binding protein; structural genomic	100.0
1j5x_A	342	Glucosamine-6-phosphate deaminase; structural geno	100.0
2e5f_A	325	Hypothetical protein PH0510; structural genomics,	100.0
3fkj_A	347	Putative phosphosugar isomerases; structural genom	100.0
3odp_A	393	Putative tagatose-6-phosphate ketose/aldose isome;	100.0
3i0z_A	389	Putative tagatose-6-phosphate ketose/aldose isome;	100.0
3eua_A	329	Putative fructose-aminoacid-6-phosphate deglycase;	100.0
2a3n_A	355	Putative glucosamine-fructose-6-phosphate aminotr;	100.0
3c3j_A	384	Putative tagatose-6-phosphate ketose/aldose isome;	100.0
1tzb_A	302	Glucose-6-phosphate isomerase, conjectural; enzyme	100.0
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	100.0
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	100.0
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	100.0
1te5_A	257	Conserved hypothetical protein; glutamine amidotra	99.96
3mdn_A	274	Glutamine aminotransferase class-II domain protei;	99.96
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	99.95
3etn_A	220	Putative phosphosugar isomerase involved in capsu	99.86
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.86
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.86
3sho_A	187	Transcriptional regulator, RPIR family; structural	99.82
3fxa_A	201	SIS domain protein; structural genomics, joint cen	99.82
2xhz_A	183	KDSD, YRBH, arabinose 5-phosphate isomerase; lipop	99.81
1jeo_A	180	MJ1247, hypothetical protein MJ1247; RUMP pathway,	99.77
1vim_A	200	Hypothetical protein AF1796; structural genomics,	99.77
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	99.76
1nri_A	306	Hypothetical protein HI0754; structural genomics,	99.74
2i2w_A	212	Phosphoheptose isomerase; lipopolysaccharide biosy	99.73
2yva_A	196	DNAA initiator-associating protein DIAA; intermole	99.71
1x92_A	199	APC5045, phosphoheptose isomerase; midwest centre	99.7
2xbl_A	198	Phosphoheptose isomerase; capsule; HET: M7P PGE PG	99.68
3cvj_A	243	Putative phosphoheptose isomerase; rossman fold, 3	99.61
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	99.61
3trj_A	201	Phosphoheptose isomerase; lipopolysaccharide biosy	99.6
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.6
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	99.56
1wiw_A	290	Glucose-6-phosphate isomerase like protein; riken	99.46
3fxa_A	201	SIS domain protein; structural genomics, joint cen	98.99
3etn_A	220	Putative phosphosugar isomerase involved in capsu	98.99
1zzg_A	415	Glucose-6-phosphate isomerase; structural genomics	98.97
2q8n_A	460	Glucose-6-phosphate isomerase; TM1385, structural	98.94
3jx9_A	170	Putative phosphoheptose isomerase; YP_001815198.1,	98.86
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	98.83
2wu8_A	549	Glucose-6-phosphate isomerase; gluconeogenesis, 5-	98.58
2cxn_A	557	Glucose-6-phosphate isomerase; 1.40A {Mus musculus	98.56
1jeo_A	180	MJ1247, hypothetical protein MJ1247; RUMP pathway,	98.54
3tbf_A	372	Glucosamine--fructose-6-phosphate aminotransferas	98.44
2o2c_A	613	GPI, glucose-6-phosphate isomerase, glycosomal, PG	98.42
3sho_A	187	Transcriptional regulator, RPIR family; structural	98.42
2xhz_A	183	KDSD, YRBH, arabinose 5-phosphate isomerase; lipop	98.4
1t10_A	605	GPI, glucose-6-phosphate isomerase, PGI, phosphohe	98.39
1b0z_A	445	Protein (phosphoglucose isomerase); autocrinefacto	98.32
2a3n_A	355	Putative glucosamine-fructose-6-phosphate aminotr;	98.28
1moq_A	368	Glucosamine 6-phosphate synthase; glutamine amidot	98.24
3hba_A	334	Putative phosphosugar isomerase; structural genomi	98.2
2i2w_A	212	Phosphoheptose isomerase; lipopolysaccharide biosy	98.16
3knz_A	366	Putative sugar binding protein; structural genomic	98.13
3eua_A	329	Putative fructose-aminoacid-6-phosphate deglycase;	98.13
2zj3_A	375	Glucosamine--fructose-6-phosphate aminotransferase	98.13
2poc_A	367	D-fructose-6- PH, isomerase domain of glutamine-fr	98.13
2e5f_A	325	Hypothetical protein PH0510; structural genomics,	98.13
3g68_A	352	Putative phosphosugar isomerase; SIS domain, doubl	98.12
3fj1_A	344	Putative phosphosugar isomerase; YP_167080.1, stru	98.11
1x92_A	199	APC5045, phosphoheptose isomerase; midwest centre	98.08
2aml_A	373	SIS domain protein; 46906266, LMO0035 protein, str	98.08
2yva_A	196	DNAA initiator-associating protein DIAA; intermole	98.07
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	98.06
3fkj_A	347	Putative phosphosugar isomerases; structural genom	98.0
3odp_A	393	Putative tagatose-6-phosphate ketose/aldose isome;	97.98
1vim_A	200	Hypothetical protein AF1796; structural genomics,	97.93
2xbl_A	198	Phosphoheptose isomerase; capsule; HET: M7P PGE PG	97.89
3i0z_A	389	Putative tagatose-6-phosphate ketose/aldose isome;	97.78
3trj_A	201	Phosphoheptose isomerase; lipopolysaccharide biosy	97.77
1j5x_A	342	Glucosamine-6-phosphate deaminase; structural geno	97.75
3ff1_A	446	Glucose-6-phosphate isomerase; alpha beta, rossman	97.65
3cvj_A	243	Putative phosphoheptose isomerase; rossman fold, 3	97.63
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	97.51
1nri_A	306	Hypothetical protein HI0754; structural genomics,	97.5
3c3j_A	384	Putative tagatose-6-phosphate ketose/aldose isome;	97.37
3ljk_A	543	Glucose-6-phosphate isomerase; structural genomics	96.54
4em6_D	553	Glucose-6-phosphate isomerase; GPI, phosphoglucose	96.46
1tzb_A	302	Glucose-6-phosphate isomerase, conjectural; enzyme	95.83
3ujh_A	567	Glucose-6-phosphate isomerase; ssgcid, structural	95.69
3hjb_A	574	Glucose-6-phosphate isomerase; PGI, IDP01329, gluc	95.52
3qki_A	597	Glucose-6-phosphate isomerase; structural genomics	95.52
3jx9_A	170	Putative phosphoheptose isomerase; YP_001815198.1,	92.93
2nap_A	723	Protein (periplasmic nitrate reductase); nitrogeno	92.14
2iv2_X	715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	90.93
2e7z_A	727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	86.65
2q8n_A	460	Glucose-6-phosphate isomerase; TM1385, structural	86.19
1h0h_A	977	Formate dehydrogenase (large subunit); tungsten se	85.4
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	84.11
1vi6_A	208	30S ribosomal protein S2P; structural genomics, ri	83.94
3bch_A	253	40S ribosomal protein SA; laminin receptor, P40 ri	83.21
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	82.7
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	81.71
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	80.07

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=100.00  E-value=4.5e-98  Score=842.04  Aligned_cols=585  Identities=39%  Similarity=0.646  Sum_probs=512.5

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEe-CCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICID-DSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      |||||+++.+      +....+..||.+|+|||||++|+++. +++               .+.++|+.|+++++.    
T Consensus         1 CGI~G~~~~~------~~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~---------------~~~~~k~~g~~~~l~----   55 (608)
T 2bpl_A            1 CGIVGAIAQR------DVAEILLEGLRRLEYRGYDSAGLAVVDAEG---------------HMTRLRRLGKVQMLA----   55 (608)
T ss_dssp             CEEEEEECSS------CCHHHHHHHHHHHGGGCCSEEEEEEECTTC---------------CEEEEEEESSHHHHH----
T ss_pred             CeEEEEEcCC------chHHHHHHHHHHHHhcCCCcCceEEEecCC---------------cEEEEeCCCcHHHHH----
Confidence            9999999643      24567899999999999999999998 443               799999999988754    


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                      +.+.      ...+.++++|||+||+|+|.++..|+|||..   ++++++|||+|+|+.+||++|...|+.|.++||||+
T Consensus        56 ~~l~------~~~~~~~~~igH~R~at~g~~~~~n~qP~~~---~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEv  126 (608)
T 2bpl_A           56 QAAE------EHPLHGGTGIAHTRWATHGEPSEVNAHPHVS---EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEV  126 (608)
T ss_dssp             HHHH------HSCCCCSEEEEEEECCCSSSCCGGGCSCEEE---TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHH
T ss_pred             HHhh------ccCCCCCEEEEEEccCCCCCCCccCCCCccC---CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHH
Confidence            3322      1245689999999999999888899999986   489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFD  235 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~  235 (636)
                      |+++|++.+.. |       .++.+++++++++|+|+|+|++||.+.+++||++||+|||++|..+     +|+..++..
T Consensus       127 i~~l~~~~~~~-g-------~~~~~av~~~~~~l~G~fa~~i~d~~~~~~l~~aRd~~PL~~g~~~~~~~~aSe~~al~~  198 (608)
T 2bpl_A          127 IAHLVNWELKQ-G-------GTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLP  198 (608)
T ss_dssp             HHHHHHHHHTT-C-------CCHHHHHHHHGGGCCSSEEEEEEETTCTTCEEEEEEBSCCEEEECSSCEEEESSGGGTTT
T ss_pred             HHHHHHHHHhc-C-------CCHHHHHHHHHHhhcCceEEEEEecCCCCEEEEEECCCceEEEEeCCeEEEEechHHHHh
Confidence            99999976532 3       5799999999999999999999998744899999999999999987     566666655


Q ss_pred             ee----eccCCCe--eeC--------CCc-ccceeeeeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcc
Q 006659          236 NA----KGRNGGT--YAR--------PAS-VQRALSILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCK  300 (636)
Q Consensus       236 ~~----~~~~g~~--~~~--------~~~-~~~~i~~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~  300 (636)
                      .+    .++||++  ...        +|. ..+++....|+....+|++|+++|+|||.+||+++++++....+.     
T Consensus       199 ~~~~~~~l~~G~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~m~keI~eqp~~~~~~l~~~~~~-----  273 (608)
T 2bpl_A          199 VTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISH-----  273 (608)
T ss_dssp             TCCEEEECCTTCEEEECSSCEEEECSSSCBCCCCCEECCSCTTTTCCTTCSSHHHHHHHTHHHHHHHHHTTSEET-----
T ss_pred             cCCeEEEECCCeEEEEECCeEEEEeCCCCEeccceeeccCChhhhhcCCcHHHHHHHHHHHHHHHHHHHhhhhhc-----
Confidence            33    8999999  222        344 457888999999999999999999999999999999999765430     


Q ss_pred             cccccccchHH-HHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCC
Q 006659          301 AKSVLLGGLKD-HLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGET  379 (636)
Q Consensus       301 ~~~l~~~~l~~-~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t  379 (636)
                       ..+..+.+.. ..+.+.++++|+++|+|+|+++|..+++++.++.++++.+..++++.+....++++|++|+||+||+|
T Consensus       274 -~~~~l~~~~~~~~~~i~~~~~I~i~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~T  352 (608)
T 2bpl_A          274 -GQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGET  352 (608)
T ss_dssp             -TEECCGGGCTTHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEEEEHHHHTTSCCCCCTTEEEEEEESSSCC
T ss_pred             -CccchhhhccchhhHhcCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCEEEEehhHhhccCCCCCCCCEEEEEeCCcCC
Confidence             0111222210 01446788999999999999999999999999889999999899987666667899999999999999


Q ss_pred             HHHHHHHHHHHHcC-CeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 006659          380 ADTLQALEYASENG-ALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA  458 (636)
Q Consensus       380 ~e~i~al~~ak~~g-~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~  458 (636)
                      ++++++++.||++| +++|+||++.+|+|++.||++|+++.++|..+++|++|+++++++++|+..++..++.+.+++++
T Consensus       353 ~e~l~a~~~ak~~G~a~~IaIT~~~~S~La~~ad~~l~~~~~~E~~~a~t~s~t~~l~~~~lL~~~l~~~~~~~~~~~~~  432 (608)
T 2bpl_A          353 ADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKGLDASIEHD  432 (608)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeEEEEECCCCCHHHHhcCEEEEecCCceeeecchHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99999999999999 99999999999999999999999999999999999999999999999999998877656677888


Q ss_pred             HHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccC
Q 006659          459 IIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDE  538 (636)
Q Consensus       459 ~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~  538 (636)
                      +.++|..+|+.++++++.+++++++++++.+.+.++++|+|.+||+|+|++|||+|++|+||++|+.+||+|||++++++
T Consensus       433 ~~~~l~~lp~~~~~~l~~~~~~~~la~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~s~i~ae~~~a~e~~HGp~~lv~~  512 (608)
T 2bpl_A          433 IVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDA  512 (608)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTCCEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCCT
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHhhCCCeEEEEecCcCHHHHHHHHHHHHHhccccceeecHHHhhhchHHHcCC
Confidence            99999999999999998777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHH
Q 006659          539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVL  618 (636)
Q Consensus       539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~  618 (636)
                      +++|++|.++++.++++.+.+++++++|+++++|+++++....  ...+..+.+|.+++.+.|+++++|+|+++|++|+.
T Consensus       513 ~~~vi~i~~~~~~~~~~~~~~~e~~~rg~~v~~i~~~~~~~~~--~~~~~~i~~p~~~~~l~pl~~~v~~Qlla~~~A~~  590 (608)
T 2bpl_A          513 DMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVS--SDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALI  590 (608)
T ss_dssp             TCEEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEEETTSCCCC--BTTEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCChhHHHHHHHHHHHHHcCCeEEEEECCCchhhc--ccCCcEEEcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988899999999999999999999986522221  11346788999889999999999999999999999


Q ss_pred             cCCCCCCCCCCcceeecC
Q 006659          619 RGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       619 ~G~~pd~pr~l~k~v~~~  636 (636)
                      +|+|||+||||+||||||
T Consensus       591 ~G~dpD~Pr~laKsvtve  608 (608)
T 2bpl_A          591 KGTDVDQPRNLAKSVTVE  608 (608)
T ss_dssp             HTCCSSSCTTCCSCCCCC
T ss_pred             hCcCCCCCCCCCeeeecC
Confidence            999999999999999998

>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}

Probab=100.00  E-value=4e-67  Score=555.08  Aligned_cols=366  Identities=38%  Similarity=0.606  Sum_probs=319.0

Q ss_pred             hhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccch-HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH
Q 006659          264 QINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGL-KDHLKTIRRSRRIVFIGCGTSYNAALAARPILE  342 (636)
Q Consensus       264 ~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l-~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~  342 (636)
                      ..+|++|+|||+|||+|||+++++++..+.+..      .+....+ ..+.+.+.++++|+|+|||+|+++|..+++++.
T Consensus         4 ~~~k~~~~h~m~kEI~eqP~~~~~~l~~~~~~~------~~~~~~~~~~~~~~l~~a~~I~i~G~GtS~~aa~~~~~~~~   77 (372)
T 3tbf_A            4 SASKDGYKHYMLKEIYEQPEAVSNTILASLADG------EISLDSFDKRAKELFEKTKHICIVACGTSYNAGMTAKYWIE   77 (372)
T ss_dssp             --CCTTCSSHHHHHHHTHHHHHHHHHHTTEETT------EECGGGSCSTHHHHHHSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred             hhhcCCcHHHHHHHHHHHHHHHHHHHHhhhccc------chhhhhhhHHHHHHHhcCCEEEEEEechHHHHHHHHHHHHH
Confidence            567999999999999999999999998755421      1111122 123455789999999999999999999999999


Q ss_pred             HhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcC-CeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659          343 ELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENG-ALCVGITNTVGSAIARKTHCGVHINAGA  421 (636)
Q Consensus       343 ~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g-~~vi~IT~~~~s~La~~ad~~l~~~~~~  421 (636)
                      ++.++++.+..++++.+....++++|++|+||+||+|++++++++.||++| +++|+||++++|+|++.||++|.+++++
T Consensus        78 ~~~g~~~~~~~~se~~~~~~~~~~~dlvI~iS~SG~T~e~l~al~~ak~~G~a~~iaIT~~~~S~La~~aD~~l~~~~g~  157 (372)
T 3tbf_A           78 KYAKVPCSVEIASEIRYRDNVVVDGSLFVSISQSGETADTLESLRKSKKQNYVGSMCICNVPNSSLVRESDIAFMTKAGV  157 (372)
T ss_dssp             HHTCCCEEEEEHHHHTTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTEEEEEEEESSSSSHHHHHSSEEEECCCCC
T ss_pred             HHhCCcEEEechhHhhhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCceEEEEcCCCCChHHHhCCEeeeecCCc
Confidence            998999999999998776667889999999999999999999999999999 9999999999999999999999999999


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCC
Q 006659          422 EIGVASTKAYTSQIVVMAMLALAIGGDTIS-TQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGY  500 (636)
Q Consensus       422 e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~  500 (636)
                      |.++++|++|++|++++++|+..+++.++. +.+++++++++|..+|+.++++++.+++++++|+.+.+.++++++|+|+
T Consensus       158 E~~~a~Tks~t~ql~~l~lL~~~l~~~~g~~~~~~~~~~~~~l~~lp~~~~~~l~~~~~~~~~a~~~~~~~~~~~lGrG~  237 (372)
T 3tbf_A          158 EIGVASTKAFTTQLVALAIFTLVIAKLKNSLTDQQIAKYTEELKNIRALVMGALKLDTEIDQISEYFSDKEHTIFLGRGL  237 (372)
T ss_dssp             CCBSSCSHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHTHHHHHHHHHTTHHHHHHHHGGGTTCCEEEEEECTT
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCEEEEecCc
Confidence            999999999999999999999999887654 5677889999999999999999987888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcC
Q 006659          501 NYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAAS  580 (636)
Q Consensus       501 ~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~  580 (636)
                      +||+|+|+||||+|++|+||++|+.+||+|||++++++++|||+|.++|+..+++++++++++++|+++++|+.+++...
T Consensus       238 ~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~alid~~~pvi~~~~~d~~~~k~~~~~~e~~~rg~~vi~i~~~~~~~~  317 (372)
T 3tbf_A          238 YYPIAIEGALKLKEISYIHAEAYPSGELKHGPLALVDKNMPIVAVVPNDELLDKTLSNLQEVHARGGKLILFVDKAVKER  317 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEGGGTTTTTTTTCCTTCEEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEEEGGGGGG
T ss_pred             CHHHHHHHHHHHHHHhCcCcceeeHHHhcCccHhhcCCCCeEEEEecCCchHHHHHHHHHHHHHcCCeEEEEECCCcccc
Confidence            99999999999999999999999999999999999999999999999888889999999999999999999998664111


Q ss_pred             CCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659          581 IFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       581 ~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~  636 (636)
                      . ....+..+.+|.+++.+.|+++++|+|+++|++|..+|+|||+||||+||||||
T Consensus       318 ~-~~~~~~~i~~p~~~~~l~pl~~~i~~Qlla~~~A~~rG~d~D~PRnLaKsVtve  372 (372)
T 3tbf_A          318 V-NFDNSIVLELDAGHDFSAPVVFTIPLQLLSYHVAIIKGTDVDQPRNLAKSVTVE  372 (372)
T ss_dssp             C-CCTTCEEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHTCCCBCC----------
T ss_pred             c-ccccceEEECCCCchhHhHHHHHHHHHHHHHHHHHHcCcCcCCCCCCCcccccC
Confidence            0 012457788999999999999999999999999999999999999999999998

>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*

Probab=100.00  E-value=2.4e-64  Score=535.71  Aligned_cols=368  Identities=59%  Similarity=0.959  Sum_probs=333.1

Q ss_pred             hhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH
Q 006659          263 EQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILE  342 (636)
Q Consensus       263 ~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~  342 (636)
                      .+.+|++|+++|++||.|||+.+++++..+.+...    +.++.+.++++++.+.++++|+++|+|+|++++..+++++.
T Consensus         8 ~~~~k~~~~~~m~kEI~eqP~~~~~~l~~~~~~~~----~~~~~~~l~~~~~~l~~~~~I~i~G~G~S~~a~~~a~~~~~   83 (375)
T 2zj3_A            8 QQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDD----YTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLE   83 (375)
T ss_dssp             ---CCTTSSSHHHHHHHTHHHHHHHHHTTTEETTT----TEECCGGGTTTHHHHHHCSEEEEEECHHHHHHHHHHHHHHH
T ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHHHhhcccc----cccCHHHHHHHHHHHhCCCEEEEEEecHHHHHHHHHHHHHH
Confidence            46789999999999999999999999977543211    34667788888888889999999999999999999999999


Q ss_pred             HhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659          343 ELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE  422 (636)
Q Consensus       343 ~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e  422 (636)
                      ++.++++.+..++++.+....++++|++|+||+||+|++++++++.||++|+++|+||++.+|||++.||++|.++.++|
T Consensus        84 ~l~~~~~~~~~~~d~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E  163 (375)
T 2zj3_A           84 ELTELPVMVELASDFLDRNTPVFRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPE  163 (375)
T ss_dssp             HHHCSCEEEEEHHHHHHTTCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECCCCCC
T ss_pred             HHhCCCeEEEeechHhhhccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeecCCcc
Confidence            99899999988899876666778999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCH
Q 006659          423 IGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNY  502 (636)
Q Consensus       423 ~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~  502 (636)
                      .++++|++|+++++++++|+..++..++...+++.++.++|..+|+.++++++.+++++++|+++.+.+.++++|+|++|
T Consensus       164 ~~~a~t~s~ta~l~~l~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~a~~~~~~~~~~~lG~G~~~  243 (375)
T 2zj3_A          164 IGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHY  243 (375)
T ss_dssp             CCSSCSHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTCSEEEEEECGGGH
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCCCEEEEccCCCH
Confidence            99999999999999999999999887765466778899999999999999998778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCC
Q 006659          503 ATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIF  582 (636)
Q Consensus       503 ~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~  582 (636)
                      ++|+|+||||+|++|+||++|+.+||+|||+++++++++||+|.++|+..+++++++++++++|+++++|+++++.... 
T Consensus       244 ~~A~E~aLKl~E~s~i~ae~~~~~E~~HGp~ali~~~~~vi~l~~~~~~~~~~~~~~~e~~~rg~~v~~i~~~~~~~~~-  322 (375)
T 2zj3_A          244 ATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETI-  322 (375)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEEECSSTTHHHHHHHHHHHHHTTCCCEEEEETTCHHHH-
T ss_pred             HHHHHHHHHHHHHhhhccccccHHHhccCcHHHcCCCCeEEEEECCChhHHHHHHHHHHHHHcCCeEEEEECCCchhhh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987532110 


Q ss_pred             CCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659          583 PGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       583 ~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~  636 (636)
                       ...+..+.+|.+++.+.|+++++|+|+++|++|+.+|+|||+||||+||||||
T Consensus       323 -~~~~~~i~~p~~~~~l~pl~~~v~~Qlla~~~A~~~G~dpd~PrnLaKsvtve  375 (375)
T 2zj3_A          323 -KNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE  375 (375)
T ss_dssp             -HHCSSEEEECCCCTTTHHHHHTHHHHHHHHHHHHHTTCCSSSCTTCCSCCCCC
T ss_pred             -hccCcEEEcCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeecC
Confidence             01236788998889999999999999999999999999999999999999998

>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*

Probab=100.00  E-value=7.9e-64  Score=530.51  Aligned_cols=365  Identities=58%  Similarity=0.947  Sum_probs=308.9

Q ss_pred             hcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhc
Q 006659          266 NKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELS  345 (636)
Q Consensus       266 ~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~  345 (636)
                      +|++|++||++||.|||+++++++..+.+...    +.++.+.+.++++.|.++++|+++|+|+|++++..+++++.++.
T Consensus         1 ~k~~~~~~m~kEI~eqP~~~~~~l~~~~~~~~----~~~~~~~l~~~~~~l~~~~~I~i~G~G~S~~~~~~a~~~~~~l~   76 (367)
T 2poc_A            1 MKGPYKHFMQKEIFEQPDSAFNTMRGRIDFEN----CVVTLGGLKSWLSTIRRCRRIIMIACGTSYHSCLATRSIFEELT   76 (367)
T ss_dssp             --CCCSSHHHHHHHTHHHHHHHHHTTTEETTT----TEECCTTTGGGHHHHHTSSEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhhhcccc----cccCHHHHHHHHHHHhCCCEEEEEEecHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999987643211    24566778888888999999999999999999999999999998


Q ss_pred             CCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc
Q 006659          346 DLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV  425 (636)
Q Consensus       346 ~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~  425 (636)
                      ++++.+..++++.+....++++|++|+||+||+|++++++++.||++|+++|+||++++|||++.||++|.++.++|..+
T Consensus        77 ~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E~~~  156 (367)
T 2poc_A           77 EIPVSVELASDFLDRRSPVFRDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGPEIGV  156 (367)
T ss_dssp             CSCEEEEEHHHHHHTTCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECCCCCCCSS
T ss_pred             CCCeEEEehhhhHhhccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcCCCCcccc
Confidence            99999988899877666778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHH-hcCCCeEEEEeCCCCHHH
Q 006659          426 ASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQ-LIAEQSLLVFGRGYNYAT  504 (636)
Q Consensus       426 ~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~-l~~~~~~~~lG~G~~~~~  504 (636)
                      ++|++|+++++++++|+..++..++...+++.++.++|..+|+.++++++.+++++++|++ +.+.+.++++|+|++||+
T Consensus       157 a~t~s~t~~l~~l~~L~~~l~~~~~~~~~~~~~~~~~l~~lp~~~~~~l~~~~~~~~~a~~~~~~~~~~~~lG~G~~~~~  236 (367)
T 2poc_A          157 ASTKAYTSQYIALVMFALSLSNDSISRKGRHEEIIKGLQKIPEQIKQVLKLENKIKDLCNSSLNDQKSLLLLGRGYQFAT  236 (367)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHTTTBSTTHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHSGGGGCSEEEEEECGGGHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhccCCcEEEEcCCCChHH
Confidence            9999999999999999999998876556778889999999999999999877889999999 999999999999999999


Q ss_pred             HHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCC
Q 006659          505 ALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPG  584 (636)
Q Consensus       505 A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~  584 (636)
                      |+|++|||+|++|+||++|+.+||+|||+++++++++|++|.++|+..+++++++++++++|+++++|+++++....  .
T Consensus       237 A~e~alKl~E~s~i~ae~~~a~E~~HGp~~lv~~~~~vi~i~~~~~~~~~~~~~~~e~~~rg~~v~~i~~~~~~~~~--~  314 (367)
T 2poc_A          237 ALEGALKIKEISYMHSEGVLAGELKHGILALVDEDLPIIAFATRDSLFPKVMSAIEQVTARDGRPIVICNEGDAIIS--N  314 (367)
T ss_dssp             HHHHHHHHHHHHCCEEEEEETTCC-----------CCEEEECCGGGCCHHHHHHHHHHHHTTCCCEEEEETTCCSCC---
T ss_pred             HHHHHHHHHHHhccccccccHHHhccchHhhccCCCcEEEEEcCChhHHHHHHHHHHHHHcCCeEEEEECCCchhhh--c
Confidence            99999999999999999999999999999999999999999998889999999999999999999999986543221  0


Q ss_pred             Ccc-eEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659          585 GSC-RVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       585 ~~~-~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~  636 (636)
                      ..+ ..+.+|.+++.+.|+++++|+|+++|++|..+|+|||+||||+||||||
T Consensus       315 ~~~~~~i~~p~~~~~l~pl~~~~~~Qlla~~~A~~~G~dpd~prnlaKsvtve  367 (367)
T 2poc_A          315 DKVHTTLEVPETVDCLQGLLNVIPLQLISYWLAVNRGIDVDFPRNLAKSVTVE  367 (367)
T ss_dssp             --CCEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHTTCCCC------------
T ss_pred             cCCccEEEeCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeeeC
Confidence            122 6788999889999999999999999999999999999999999999998

>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*

Probab=100.00  E-value=7e-63  Score=524.06  Aligned_cols=365  Identities=40%  Similarity=0.661  Sum_probs=327.7

Q ss_pred             hhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccch-HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH
Q 006659          264 QINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGL-KDHLKTIRRSRRIVFIGCGTSYNAALAARPILE  342 (636)
Q Consensus       264 ~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l-~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~  342 (636)
                      ..+|++|++||++||.|||+.+++++..+...      ..++.+.+ .++++.+.++++|+++|+|+|+++|..+++++.
T Consensus         2 ~~~k~~~~~~m~keI~eqP~~~~~~l~~~~~~------~~~~~~~~~~~~~~~i~~~~~I~i~G~G~S~~~a~~~~~~l~   75 (368)
T 1moq_A            2 AGDKGIYRHYMQKEIYEQPNAIKNTLTGRISH------GQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFE   75 (368)
T ss_dssp             -CCCTTCSSHHHHHHHTHHHHHHHHHTTSEET------TEECCGGGCSSHHHHHHHCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred             CCccCCCccHHHHHHHHHHHHHHHHHHhhhcc------CcccHHHHHHHHHHHHhCCCEEEEEEchHHHHHHHHHHHHHH
Confidence            35689999999999999999999999875531      12233344 345667888999999999999999999999999


Q ss_pred             HhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcC-CeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659          343 ELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENG-ALCVGITNTVGSAIARKTHCGVHINAGA  421 (636)
Q Consensus       343 ~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g-~~vi~IT~~~~s~La~~ad~~l~~~~~~  421 (636)
                      ++.++++.+..++++.+....++++|++|+||+||+|++++++++.||++| +++|+||++.+|+|++.||++|.++.++
T Consensus        76 ~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~  155 (368)
T 1moq_A           76 SLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGT  155 (368)
T ss_dssp             HHSCCCEEEEEHHHHHTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCC
T ss_pred             HHhCCceEEEehhhHhhhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCC
Confidence            988899988888888766566789999999999999999999999999999 9999999999999999999999999999


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCC
Q 006659          422 EIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYN  501 (636)
Q Consensus       422 e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~  501 (636)
                      |..++.|++|+++++++++|+..++..++.+.++++++.++|..+|+.++++++.+++++++|+++.+.++++++|+|.+
T Consensus       156 e~~~a~t~s~~~~l~~l~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~a~~~~~~~~~~~lG~G~~  235 (368)
T 1moq_A          156 EIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQ  235 (368)
T ss_dssp             CCSSSCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCSEEEEEECGGG
T ss_pred             eecccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            98889999999999999999999987766556778889999999999999999767789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCC
Q 006659          502 YATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASI  581 (636)
Q Consensus       502 ~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~  581 (636)
                      ||+|+|++|||+|++|+||++++.+||+|||+++++++++||+|.++|+..+++.+++++++++|+++++|++++.....
T Consensus       236 ~~~A~E~aLKl~E~~~i~ae~~~~~E~~HGp~~lv~~~~~vi~~~~~~~~~~~~~~~~~e~~~~g~~v~~i~~~~~~~~~  315 (368)
T 1moq_A          236 YPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVS  315 (368)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGCCCC
T ss_pred             HHHHHHHHHHHHHHhccccccccHHHhccCcHHHcCCCceEEEEEcCCchHHHHHHHHHHHHHcCCeEEEEECCCcchhc
Confidence            99999999999999999999999999999999999999999999998888889999999999999999999986532211


Q ss_pred             CCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659          582 FPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       582 ~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~  636 (636)
                        ...+..+.+|.+++.+.|+++++|+|+++|++|..+|+|||+||||+||||||
T Consensus       316 --~~~~~~i~~p~~~~~l~pl~~~v~~qlla~~~A~~~G~dpd~pr~laK~vtve  368 (368)
T 1moq_A          316 --SDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE  368 (368)
T ss_dssp             --BTTEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHTCCSSSCTTCCSCCCCC
T ss_pred             --ccCCceEEcCCCchhHHHHHHHHHHHHHHHHHHHHcCcCCCCCCCCCceeeeC
Confidence              12356788998889999999999999999999999999999999999999998

>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=2.6e-60  Score=498.04  Aligned_cols=334  Identities=27%  Similarity=0.360  Sum_probs=287.0

Q ss_pred             HHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHH--cCCCeEEEEeechhHHHHHHHHHHHHHhcCCc
Q 006659          271 EHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI--RRSRRIVFIGCGTSYNAALAARPILEELSDLP  348 (636)
Q Consensus       271 ~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l--~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~  348 (636)
                      .++|++||.|||+.+++++.....             .++++++.+  .++++|+|+|||+|+++|..++++++++.+++
T Consensus         6 ~~~m~kEI~eqP~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~   72 (344)
T 3fj1_A            6 ITRMRREIDEIPEAVQRLLDHGAQ-------------DVARVAAVLRLRDPSFVATVARGSSDHVCTYLSYAAELLLGLP   72 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHHHHhhCCCCEEEEEEechHHHHHHHHHHHHHHHhCCc
Confidence            458999999999999999876432             245555555  78999999999999999999999999988999


Q ss_pred             EEEeeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccc
Q 006659          349 VTMEIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAS  427 (636)
Q Consensus       349 ~~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~  427 (636)
                      +.+..+.... +..+..+++|++|++|+||+|+|++++++.||++|+++|+||++++|||++.||++|.+++++|.++++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E~~va~  152 (344)
T 3fj1_A           73 VASLGPSVASVYDARLRLDRALCLAVSQSGKSPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGPELSVAA  152 (344)
T ss_dssp             EEECCTHHHHTTCCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCCCCCCSTTC
T ss_pred             EEEecchHHhhhcccCCCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecCCCCcccccc
Confidence            9886655443 334457899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHH
Q 006659          428 TKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALE  507 (636)
Q Consensus       428 t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e  507 (636)
                      |++|+++++++++|+..++..        +++.+++.++|+.++++++.  .++++++.+.+.++++++|+|++||+|+|
T Consensus       153 Tksft~ql~~l~~l~~~~~~~--------~~~~~~l~~lp~~~~~~l~~--~~~~~a~~~~~~~~~~~lG~G~~~~~A~E  222 (344)
T 3fj1_A          153 TKTFVTSAVAGLMLLADWAED--------DGLRAALGNLPETLAAASRI--DWPEMRVAIGARPSLFTLGRGTSLAVSNE  222 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHTHHHHHHHHHTC--CCHHHHHHHHHSCCEEEEECGGGHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence            999999999999988877643        45778899999999998864  25678888889999999999999999999


Q ss_pred             HHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcc
Q 006659          508 GALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSC  587 (636)
Q Consensus       508 ~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~  587 (636)
                      +||||+|++|+||++|+.+||+|||+++++++++||+|.++|+.++++++++++++++|+++++|+.++..        +
T Consensus       223 ~ALKlkE~s~i~ae~~~~~E~~HGP~ali~~~~~vi~~~~~~~~~~~~~~~~~e~~~~g~~v~~i~~~~~~--------~  294 (344)
T 3fj1_A          223 AALKFKETCQLHAESYSSAEVLHGPVSIVEEGFPVLGFAAGDAAEAPLAEIADQIAAKGATVFATTGRVTR--------A  294 (344)
T ss_dssp             HHHHHHHHHCCCEEEEETTTGGGSSSCHHHHTCCEEECCCSSTTHHHHHHHHHHHHHTTCCEEESSTTCSS--------S
T ss_pred             HHHHHHHHhccCceeecHHhhccchHhhhcCCceEEEEecCCchHHHHHHHHHHHHHcCCeEEEEeCCCCC--------c
Confidence            99999999999999999999999999999999999999999999999999999999999999999876532        1


Q ss_pred             eEEE-cCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeec
Q 006659          588 RVIE-VPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTT  635 (636)
Q Consensus       588 ~~~~-~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~  635 (636)
                      ..+. +|.+++.+.|+++++|+|+++|++|..+|+|||+||||+|||.+
T Consensus       295 ~~i~~~~~~~~~~~pl~~~~~~Qlla~~~a~~~G~d~D~Pr~l~KVt~t  343 (344)
T 3fj1_A          295 RVLEHVRSGHALTDPLSLIVSFYSMVEAFASERGIDPDAPRHLNKVTET  343 (344)
T ss_dssp             EECCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTCCCC-----------
T ss_pred             ceEEeCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCccceeee
Confidence            2334 36688899999999999999999999999999999999999865

>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}

Probab=100.00  E-value=1.4e-59  Score=489.76  Aligned_cols=326  Identities=24%  Similarity=0.389  Sum_probs=271.9

Q ss_pred             HHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHH--cCCCeEEEEeechhHHHHHHHHHHHHHhcCCc
Q 006659          271 EHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI--RRSRRIVFIGCGTSYNAALAARPILEELSDLP  348 (636)
Q Consensus       271 ~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l--~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~  348 (636)
                      .+||+|||.|||+.+++++....             +.++++++.+  .++++|+|+|||+|+++|..+++++.+..+++
T Consensus         5 ~~~M~kEI~eqP~~~~~~l~~~~-------------~~~~~~~~~i~~~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~   71 (334)
T 3hba_A            5 NTIMEQEARTAPQKIAEQLLAND-------------AITESLGSVLREFKPKFVMIVGRGSSDHAGVFAKYLFEIEASIP   71 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHCCSCEEEESSGGGCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHhCCc
Confidence            45899999999999999987532             2355666666  78999999999999999999999999977999


Q ss_pred             EEEeeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccc
Q 006659          349 VTMEIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAS  427 (636)
Q Consensus       349 ~~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~  427 (636)
                      +.+..+.... +......++|++|++|+||+|++++++++.||++|+++|+||++++|+|++.||++|.+++++|.++++
T Consensus        72 v~~~~~~~~~~~~~~~~~~~dl~i~iS~SG~T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~g~E~~va~  151 (334)
T 3hba_A           72 TFAAAPSVASVYGKTLKLAGGLVIVISQSGRSPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLRAGEEKAVAA  151 (334)
T ss_dssp             EEECCHHHHHTSCCCCCCTTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECCCCCCCSSSC
T ss_pred             EEEEcchHHHHhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeecCCCcccccc
Confidence            9887665543 334456899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHH
Q 006659          428 TKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALE  507 (636)
Q Consensus       428 t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e  507 (636)
                      |++|+++++++++|+..++..        +++.+++..+|+.++++++.  .++++++.+.+.++++++|+|++||+|+|
T Consensus       152 Tksft~~l~~l~~l~~~~~~~--------~~~~~~l~~lp~~~~~~l~~--~~~~~a~~~~~~~~~~~lG~G~~~~~A~E  221 (334)
T 3hba_A          152 TKSYLATLSALLQVAAKWTQN--------ESLVEAVNSLPQALQAAVDA--EPQLRAGSLTDVKNLVVLGRGFGYAVSKE  221 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHHHS--CCSCCGGGTTTCCEEEEEECTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCeEEEEeCCcCHHHHHH
Confidence            999999999999888777542        35677889999999998854  23457888899999999999999999999


Q ss_pred             HHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcc
Q 006659          508 GALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSC  587 (636)
Q Consensus       508 ~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~  587 (636)
                      +||||+|++|+||++|+.+||+|||+++++++++||+|.++|+.++++++++++++++|+++++|+.++           
T Consensus       222 ~ALKlkE~~~i~ae~~~~~E~~HGP~alv~~~~~vi~~~~~~~~~~~~~~~~~e~~~~g~~v~~i~~~~-----------  290 (334)
T 3hba_A          222 IALKLKEVCAIHAEAFSSAEFLHGPVTLVEKKLSILDVCIRDESYGSHVEQIANVKQRGANLIHLHQTS-----------  290 (334)
T ss_dssp             HHHHHHHHHCCEEEEEETTTCC-----------CEEEEECCSTTHHHHHHHHHHHHHTTCCEEEEECSC-----------
T ss_pred             HHHHHHHHcCcceEEecHHhhccchHHhcCCCceEEEEecCchhHHHHHHHHHHHHHcCCeEEEEECCC-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999998643           


Q ss_pred             eEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeec
Q 006659          588 RVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTT  635 (636)
Q Consensus       588 ~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~  635 (636)
                           |.+++++.|+++++|+|+++|++|+.+|+|||+||||+|||.+
T Consensus       291 -----~~~~~~l~pl~~~v~~Qlla~~~A~~rG~d~D~Pr~l~KVt~t  333 (334)
T 3hba_A          291 -----ADIHPRIAPLALLQRFYIDVAAVAIALGINPDKPAGLKKVTQT  333 (334)
T ss_dssp             -----TTSCTTTHHHHHHHHHHHHHHHHHHHTTCCTTC----------
T ss_pred             -----CCcchhHhhHHHHHHHHHHHHHHHHHhCcCCCCCCCCceeeee
Confidence                 4456899999999999999999999999999999999999865

>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}

Probab=100.00  E-value=8.3e-57  Score=472.97  Aligned_cols=334  Identities=20%  Similarity=0.288  Sum_probs=298.5

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEe
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTME  352 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~  352 (636)
                      .|++||.|||+.+++++..+....          +.+     ...++++|+|+|+|+|+++|..+++++.++.++++.+.
T Consensus         3 ~M~keI~eqP~~~~~~l~~~~~~~----------~~~-----~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~   67 (352)
T 3g68_A            3 TIQDYMLETPVRMREIISNADSLF----------NEV-----KRTNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVKM   67 (352)
T ss_dssp             CHHHHHHTHHHHHHHHHHHHHHHT----------TTG-----GGSCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHhh----------hHh-----hhcCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEEE
Confidence            399999999999999987643211          111     14689999999999999999999999999889999999


Q ss_pred             eccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhH
Q 006659          353 IASDLVDRQAPIY-REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAY  431 (636)
Q Consensus       353 ~~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~  431 (636)
                      .++++.+....+. ++|++|+||+||+|++++++++.||++|+++|+||++++|+|++.||++|.+++++|.++++|++|
T Consensus        68 ~~se~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~~~~g~E~~va~tksf  147 (352)
T 3g68_A           68 YPFMITEDTFKFDNENTLVVGVSQGGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGY  147 (352)
T ss_dssp             CGGGCCGGGGSSCCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCCCCCCCCSSCSHHH
T ss_pred             cchhhhhcccCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEEeCCCCCccccccHHH
Confidence            9999976655666 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHH
Q 006659          432 TSQIVVMAMLALAIGGDTIS-TQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGA  509 (636)
Q Consensus       432 ~~~~~~l~lL~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~a  509 (636)
                      +++++++++|+..++..++. ..+++++++++|..+++.+.++++. +++++++++.+.+.++++++|+|++||+|+|+|
T Consensus       148 ~~ql~~l~~La~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~lGrG~~~~~A~E~A  227 (352)
T 3g68_A          148 YCTKLNLMLLGLQIAREKGIISSEKYNEEINKILDAINRFEAVYKLSKQWIERNKEKLVNSKEIRIIGHSDIYGDTLEAA  227 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTCCEEEEEECGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence            99999999999999987654 5677888999999999999999976 678999999999999999999999999999999


Q ss_pred             HHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceE
Q 006659          510 LKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRV  589 (636)
Q Consensus       510 lKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~  589 (636)
                      ||++|++++||++|+.+||+|||+++++++++||+|.+++..  +..+++++++++|+++++|++++..       .+..
T Consensus       228 LKlkE~s~i~ae~~~a~E~~HGP~alid~~~pvi~~~~~~~~--~~~~~~~~~~~~g~~v~~i~~~~~~-------~~~~  298 (352)
T 3g68_A          228 LKLLETMRIPVTGYEFEEFIHGIYNAINSDSTIFILDTGKEP--RVTKMIDVLSGWTENVFAIGRDVTE-------NDKN  298 (352)
T ss_dssp             HHHHHHHCSCEEEEEHHHHHTTGGGGCCTTEEEEEEECSCCT--THHHHHHHHHTTCSCEEEEESSCCC-------STTC
T ss_pred             HHHHHHhcccccccchhhccccchheeCCCceEEEEECCchH--HHHHHHHHHHHcCCeEEEEecCCCC-------Ccee
Confidence            999999999999999999999999999999999999986543  3566778889999999999986532       1345


Q ss_pred             EEcCC-CCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q 006659          590 IEVPQ-VEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLA  630 (636)
Q Consensus       590 ~~~p~-~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~  630 (636)
                      +.+|. .++.+.|+++++|+|+|+|++|+.+|+|||+|||..
T Consensus       299 ~~~p~~~~~~~~pl~~~v~~Qlla~~~A~~~G~d~D~Pr~~~  340 (352)
T 3g68_A          299 LKIDITDNPYYQTFNFIVPIQLICGEIPTLRGVDPSVPKDTR  340 (352)
T ss_dssp             EECCCCSCTTGGGGTTTHHHHHHHHHSGGGGTCCTTSCSCTT
T ss_pred             EEeCCCCchhHhHHHHHHHHHHHHHHHHHHhCcCCCCCCCcc
Confidence            77885 467899999999999999999999999999999975

>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-56  Score=475.98  Aligned_cols=341  Identities=19%  Similarity=0.242  Sum_probs=309.1

Q ss_pred             HHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcC-CCeEEEEeechhHHHHHHHHHHHHHhcCCcE
Q 006659          271 EHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRR-SRRIVFIGCGTSYNAALAARPILEELSDLPV  349 (636)
Q Consensus       271 ~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~-~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~  349 (636)
                      +|||++||.|||+.+++++..+.             +.++++++.+.+ +++|+++|+|+|+++|..+++++.++.++++
T Consensus        14 ~h~m~kEI~eqp~~~~~~~~~~~-------------~~l~~~~~~i~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v   80 (373)
T 2aml_A           14 KPTMMTYINEEEEMCRVILADFQ-------------TNAEKLESLVKNGAKEWLILATGSSLNAAQSAKYYIENLADVRI   80 (373)
T ss_dssp             CCCHHHHHTTHHHHHHHHHHHHH-------------HHHHHHHTTCTTCCCEEEEEECHHHHHHHHHHHHHHHHHSSCEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHccCCEEEEEEecHHHHHHHHHHHHHHHHhCCcE
Confidence            56899999999999999987532             245667776555 8999999999999999999999999888999


Q ss_pred             EEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHc-CCeEEEEEcCCCCccccccCeeEEcCCCCcccccch
Q 006659          350 TMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASEN-GALCVGITNTVGSAIARKTHCGVHINAGAEIGVAST  428 (636)
Q Consensus       350 ~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~-g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t  428 (636)
                      .+..++++.+....++++|++|++|+||+|++++++++.||++ |+++|+||++.+|+|++.||++|.++.++|.+++.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~~E~~~~~t  160 (373)
T 2aml_A           81 TIEEPFNHLYYEKLSSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVT  160 (373)
T ss_dssp             EEECHHHHHHHCCCCTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECSCCCCCSSSCS
T ss_pred             EEECchhHHHhccCCCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecCCCcccccccc
Confidence            9988888876656688999999999999999999999999999 999999999999999999999999999999889999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHH
Q 006659          429 KAYTSQIVVMAMLALAIGGDTIS-TQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATAL  506 (636)
Q Consensus       429 ~s~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~  506 (636)
                      ++|+++++.+++|+..++..++. ..+++++++++|+.+|+.++++++. +++++++|+++.+.++++++|+|++||+|+
T Consensus       161 ~s~ts~~~~l~ll~~~l~~~~g~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~lG~G~~~~~A~  240 (373)
T 2aml_A          161 KGFTATVLTLMLTGLHFAYKTVQIDETRFNNEISAFSRAIDAIPATIAETEAFYERWQEEFATAPKFTAIGYGPTVGTCK  240 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Confidence            99999999999999988876653 4457788899999999999999986 568999999999999999999999999999


Q ss_pred             HHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCc
Q 006659          507 EGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGS  586 (636)
Q Consensus       507 e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~  586 (636)
                      |+||||+|++++||++++.+||+|||+++++++++||+|.++|+..+++++++++++++|+++++|++++..       .
T Consensus       241 E~aLKl~E~s~i~a~~~~~~E~~HGp~ali~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~~i~~~~~~-------~  313 (373)
T 2aml_A          241 EFETKFSETVRVPSQGLDLEAFMHGPYLEVNPQHRIFFLETASAVTERLVLLRDYESKYTPFTYTVKFGKGE-------D  313 (373)
T ss_dssp             HHHHHHHHHTCSCEEEEEHHHHTTTGGGGCCTTCEEEEEECCSTTHHHHHHHHHHHTTTCSCEEEEEESCCS-------S
T ss_pred             HHHHHHHHHhhhhceeccHHHhccccHHhcCCCCeEEEEECCCchHHHHHHHHHHHHHcCCcEEEEECCCCC-------C
Confidence            999999999999999999999999999999999999999998888899999999999999999999986411       1


Q ss_pred             ceEEEcC-CCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc
Q 006659          587 CRVIEVP-QVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAK  631 (636)
Q Consensus       587 ~~~~~~p-~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k  631 (636)
                      +..+.+| .+++.+.|+++++|+|+++|++|+.+|+|||+|||+++
T Consensus       314 ~~~i~ip~~~~~~l~pl~~~v~~Qlla~~~A~~~G~dpd~Pr~~~~  359 (373)
T 2aml_A          314 DRTLVIPTDLDEYQAPFLMILPFQILAHHIAELKGNKLTERIYTDF  359 (373)
T ss_dssp             TTEEEECSCCCTTTTHHHHTHHHHHHHHHHHHHTTCCTTSCCSTTH
T ss_pred             CcEEEcCCCCcchHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCcch
Confidence            2467788 57889999999999999999999999999999999986

>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}

Probab=100.00  E-value=5.1e-57  Score=475.84  Aligned_cols=337  Identities=22%  Similarity=0.277  Sum_probs=281.2

Q ss_pred             HHHHHHHhcHHHHHHHhhc-cccccCCcccccccccchHHHHH-HHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEE
Q 006659          273 YMQKEIHEQPESLTTTMRG-RLIRGGSCKAKSVLLGGLKDHLK-TIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVT  350 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~-~~~~~~~~~~~~l~~~~l~~~~~-~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~  350 (636)
                      ...|||.|||+.+++++.. +.+             .++.+.. .+.++++|+|+|||+|+++|..+++++.++.++++.
T Consensus        15 ~~~kEI~eqP~~l~~~l~~~~~~-------------~~~~~~~~~~~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~   81 (366)
T 3knz_A           15 LYFQGMNETPLRLLEMLTQTRED-------------LWRAAQALTERGVTRIILTGSGTSYHGALTARTFMQRWCALPVD   81 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCHH-------------HHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHHHCCCeE
Confidence            4779999999999999976 321             1233322 468899999999999999999999999998899999


Q ss_pred             EeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhh
Q 006659          351 MEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKA  430 (636)
Q Consensus       351 ~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s  430 (636)
                      +..++++.+....++++|++|++|+||+|++++++++.||++|+++|+||++++|||++.||++|.+++++|.++++|++
T Consensus        82 ~~~~se~~~~~~~~~~~dlvI~iS~SGeT~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~~~~g~E~~~a~tks  161 (366)
T 3knz_A           82 VCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKG  161 (366)
T ss_dssp             EECGGGCCHHHHHHSCSEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCCCCC------CTH
T ss_pred             EEcchHHHhhccCCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEecCCCccccccccHH
Confidence            99999986655456899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHH
Q 006659          431 YTSQIVVMAMLALAIGGDTIS-TQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEG  508 (636)
Q Consensus       431 ~~~~~~~l~lL~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~  508 (636)
                      |++|++++++|+..++..++. +.+++++++++|..+++.+.++++. +++++++++.+.+.++++++|+|++||+|+|+
T Consensus       162 ~tsql~~l~lLa~~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~lGrG~~~~~A~Eg  241 (366)
T 3knz_A          162 YHCTVLNLMLLALAVAGQQQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGTVQEG  241 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTCSEEEEEECGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHH
Confidence            999999999999999887654 5677889999999999999999976 66899999999999999999999999999999


Q ss_pred             HHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcce
Q 006659          509 ALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCR  588 (636)
Q Consensus       509 alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~  588 (636)
                      ||||+|++++||++|+.+||+|||++++++++|||+|.+++.  .+..+++++++++|+++++|+.++..       .+.
T Consensus       242 ALKlkE~s~i~ae~~~a~E~~HGP~alid~~~pvi~~~~~~~--~~~~~~~~~l~~~g~~vi~i~~~~~~-------~~~  312 (366)
T 3knz_A          242 ALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPD--ARQDRLAQILGEWTPSIYRIGPQVEN-------NGL  312 (366)
T ss_dssp             HHHHHHHHCSCEEEEEHHHHHHTHHHHCCTTEEEEEECSSCC--HHHHHHHHHHHHHCSCEEEEESSSCC-------SSS
T ss_pred             HHHHHHHhcccceeechhhcCcCchhhhCCCceEEEEecCch--HHHHHHHHHHHHcCCeEEEEecCCCc-------cce
Confidence            999999999999999999999999999999999999998654  45677888999999999999876532       234


Q ss_pred             EEEcCC-CCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc
Q 006659          589 VIEVPQ-VEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAK  631 (636)
Q Consensus       589 ~~~~p~-~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k  631 (636)
                      .+.+|. .++.+.|+++++|+|+|+|++|+.+|+|||+|||...
T Consensus       313 ~~~~p~~~~~~l~pl~~~v~~Qllay~~A~~rG~d~D~PR~~~f  356 (366)
T 3knz_A          313 NLNFPFVNDEDFAVFEYIIPLQMLCAILPPQKGINPAIPKDPQF  356 (366)
T ss_dssp             SEECCCCCCTTTTHHHHHHHHHHHHHHCC---------------
T ss_pred             eEEeCCCCchHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCcch
Confidence            567886 4678999999999999999999999999999999753

>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1

Probab=100.00  E-value=5.6e-56  Score=465.83  Aligned_cols=328  Identities=23%  Similarity=0.344  Sum_probs=285.0

Q ss_pred             ChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHH--HHcCCCeEEEEeechhHHHHHHHHHHHHHhcC
Q 006659          269 NYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLK--TIRRSRRIVFIGCGTSYNAALAARPILEELSD  346 (636)
Q Consensus       269 ~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~--~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~  346 (636)
                      ..+|||++||.|||+.+++++..++.. .         .. +++++  .+.++++|+++|+|+|+++|..+++++.+..+
T Consensus        11 ~~~~~m~keI~eqP~~~~~~~~~~~~~-~---------~~-~~~~~~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g   79 (342)
T 1j5x_A           11 HHMSKTLKEITDQKNELKKFFENFVLN-L---------EK-TEIFSEIQKNLTDEVLFVGCGSSYNLALTISYYFERVLK   79 (342)
T ss_dssp             ---CHHHHHHHHHHHTHHHHHHHTGGG-T---------TC-------C----CCEEEEEESTHHHHHHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhhcc-c---------ch-HHHHHHHHhCCCCEEEEEEchHHHHHHHHHHHHHHHhhC
Confidence            346789999999999999999874421 0         11 33443  46789999999999999999999999999778


Q ss_pred             CcEEEeeccchhcccCCCCCC-cEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc
Q 006659          347 LPVTMEIASDLVDRQAPIYRE-DTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV  425 (636)
Q Consensus       347 ~~~~~~~~~e~~~~~~~~~~~-dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~  425 (636)
                      +++.+..++++.+....+.++ |++|++|+||+|++++++++.||++|+++|+||++.+|+|++.||++|.++. +|.++
T Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~vIaIT~~~~S~La~~ad~~l~~~~-~e~~~  158 (342)
T 1j5x_A           80 IRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPV-REEAI  158 (342)
T ss_dssp             CEEEEEEHHHHHTTCSCCCCSSEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEECCC-CCCSS
T ss_pred             CeEEEECchHHHhcCcccCCCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHhcCEEEEcCC-Cccee
Confidence            999998888885555567788 9999999999999999999999999999999999999999999999999988 88888


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHH-HHhcCCCeEEEEeCCCCHHH
Q 006659          426 ASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLA-KQLIAEQSLLVFGRGYNYAT  504 (636)
Q Consensus       426 ~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a-~~l~~~~~~~~lG~G~~~~~  504 (636)
                      +.|++++++++++++|+..++....          +++..+|+.++++++.  .+++++ +++.+.+.++++|+|.+||+
T Consensus       159 a~t~s~~~~l~~l~~L~~~l~~~~~----------~~l~~l~~~~~~~l~~--~~~~~a~~~l~~~~~~~~lG~G~~~~~  226 (342)
T 1j5x_A          159 VMTKSFSMILLSLMFLADKIAGNST----------ERFSELVGYSPEFFDI--SWKVIEKIDLKEHDHFVFLGMSEFFGV  226 (342)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCCC----------HHHHHHHHHHHHHHHH--HHHHHHTSCGGGCCEEEEECCTHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCeEEEEcCCCCHHH
Confidence            8999999999999999999876532          5677788888888854  478888 88889999999999999999


Q ss_pred             HHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCC
Q 006659          505 ALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPG  584 (636)
Q Consensus       505 A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~  584 (636)
                      |+|++|||+|++++||++++.+||+|||+++++++++|++|.++| .++++.+++++++++|+++++|++++        
T Consensus       227 A~e~aLKl~E~s~i~a~~~~~~E~~HGp~~~v~~~~~vi~~~~~~-~~~~~~~~~~~~~~~g~~v~~i~~~~--------  297 (342)
T 1j5x_A          227 SLESALKCIEMSLTFSEAYSTLEYRHGPKALVKKGTLVFMQKVSG-MDEQEKRLRKELESLGATVLEVGEGG--------  297 (342)
T ss_dssp             HHHHHHHHHHHHCCEEEEECGGGGGTTGGGGCCTTEEEEEECCTT-CHHHHHHHHHHHHHTTCEEEEESTTS--------
T ss_pred             HHHHHHHHHHHhhhheeeccHHHhcCCchhhhCCCceEEEEECCc-hHHHHHHHHHHHHHcCCeEEEEecCC--------
Confidence            999999999999999999999999999999999999999999988 99999999999999999999998643        


Q ss_pred             CcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeec
Q 006659          585 GSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTT  635 (636)
Q Consensus       585 ~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~  635 (636)
                          .+.+| .+ +++|+++++|+|+++|++|..+|+|||+||||+||||+
T Consensus       298 ----~i~~p-~~-~l~pl~~~v~~qlla~~~A~~~G~dpd~pr~l~k~vt~  342 (342)
T 1j5x_A          298 ----DIPVS-ND-WKSAFLRTVPAQILGYQKAISRGISPDKPPHLEKTVVL  342 (342)
T ss_dssp             ----SBCCC-CS-GGGGGGTTHHHHHHHHHHHHHHTCCTTSCTTCCSSCCC
T ss_pred             ----eEeec-HH-HHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCcceEEeC
Confidence                13456 44 89999999999999999999999999999999999995

>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*

Probab=100.00  E-value=3.7e-56  Score=464.24  Aligned_cols=321  Identities=24%  Similarity=0.333  Sum_probs=288.3

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEe
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTME  352 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~  352 (636)
                      .|++||.|||+.+++  ...               .++++++.+.++++|+++|+|+|+++|..+++++.++.++++. .
T Consensus         2 ~m~keI~eqP~~~~~--~~~---------------~~~~~~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~-~   63 (325)
T 2e5f_A            2 KTLIEIKQTPDGIIK--ADK---------------VFNKVKDKISLPNRILYLGCGSSHFLSKLLAMVTNMHGGLGIA-L   63 (325)
T ss_dssp             CHHHHHTTHHHHHHH--HHH---------------HHHHHTTTCCCCSEEEEEESTHHHHHHHHHHHHHHHTTSEEEE-E
T ss_pred             chHHHHHHHHHHHHH--cCc---------------cHHHHHHHHhCCCEEEEEEChHHHHHHHHHHHHHHHHhCCCEE-E
Confidence            489999999999998  221               1455666788999999999999999999999999997788888 6


Q ss_pred             eccchhcccCCCCCC--cEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhh
Q 006659          353 IASDLVDRQAPIYRE--DTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKA  430 (636)
Q Consensus       353 ~~~e~~~~~~~~~~~--dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s  430 (636)
                      .++++.+....++++  |++|++|+||+|++++++++.||   +++|+||++ +|+|++.||++|.++. +|.+++.|++
T Consensus        64 ~~se~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak---a~viaIT~~-~S~La~~ad~~l~~~~-~e~~~a~t~s  138 (325)
T 2e5f_A           64 PCSEFLYSKETYPIGEVELAVGISRSGETTEILLALEKIN---VKKLGITTR-ESSLTRMCDYSLVVPA-IEESVVMTHS  138 (325)
T ss_dssp             EHHHHHHHGGGSCCCSCSEEEEECSSSCCHHHHHHHHTCC---SCEEEEESS-SCHHHHHSSEEEECCC-CCCSSSCCHH
T ss_pred             echHHhhcCcccCCCCCeEEEEEeCCCCCHHHHHHHHHhC---CCEEEEECC-CCHHHHhcCEEEecCC-ccceecccHH
Confidence            777776655567899  99999999999999999999999   999999999 9999999999999988 8888999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHH
Q 006659          431 YTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGAL  510 (636)
Q Consensus       431 ~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~al  510 (636)
                      |+++++++++|+..++...         + +++.++|+.++++++.+++++++|+++.+ ++++++|+|.+||+|+|++|
T Consensus       139 ~~~~l~~l~~L~~~~~~~~---------~-~~l~~l~~~~~~~l~~~~~~~~~a~~~~~-~~~~~lG~G~~~~~A~E~aL  207 (325)
T 2e5f_A          139 FTSFYFAYLQLLRYSYGLP---------P-LNAGEISKATEKSLEYERYIREIVESFDF-QNIIFLGSGLLYPVALEASL  207 (325)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---------C-CCHHHHHHHHHHHHTTHHHHHHHHHHCCC-SEEEEEECTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---------H-HHHHHHHHHHHHHHcChHHHHHHHHHhcC-CCEEEEccCCCHHHHHHHHH
Confidence            9999999999999887541         2 45778899999988876789999999999 99999999999999999999


Q ss_pred             HHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCc-ceE
Q 006659          511 KVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGS-CRV  589 (636)
Q Consensus       511 Kl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~-~~~  589 (636)
                      ||+|++|+||++++.+||+|||+++++++++||+|.  |..++++.+.+++++++|+++++|++++. .     .. +..
T Consensus       208 Kl~E~~~i~a~~~~~~E~~HGp~~li~~~~~vi~~~--~~~~~~~~~~~~e~~~~g~~v~~i~~~~~-~-----~~~~~~  279 (325)
T 2e5f_A          208 KMKEMSIFWSEAYPTFEVRHGFKAIADEKTLVVLMV--EEPFEWHEKLVKEFKNQGAKVLVISNSPQ-D-----LGQDYS  279 (325)
T ss_dssp             HHHHHHCCEEEEEEGGGGGTTGGGGCSTTEEEEEEE--SSCCHHHHHHHHHHHHTTCEEEEEESCCC-C-----CSCSEE
T ss_pred             HHHHHHHHHhhhcCHHHhhhccHhhcCCCCeEEEEe--CchHHHHHHHHHHHHHcCCeEEEEeCCcc-c-----ccCCcE
Confidence            999999999999999999999999999999999999  66778899999999999999999997642 1     12 366


Q ss_pred             EEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeec
Q 006659          590 IEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTT  635 (636)
Q Consensus       590 ~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~  635 (636)
                      +.+|..++.+.|+++++|+|+++|++|..+|+|||+||||+|||||
T Consensus       280 ~~~p~~~~~l~pl~~~~~~qlla~~~a~~~G~dpd~pr~l~k~vt~  325 (325)
T 2e5f_A          280 IELPRLSKDANPIPYLPIVQLLSYYKAVSRGLNPDNPRFLDKVVRW  325 (325)
T ss_dssp             EECCCCCTTTTTTTHHHHHHHHHHHHHHHTTCCTTSCTTCCSSCCC
T ss_pred             EEeCCCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCceeeC
Confidence            8889888999999999999999999999999999999999999997

>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}

Probab=100.00  E-value=8.9e-55  Score=456.28  Aligned_cols=318  Identities=17%  Similarity=0.280  Sum_probs=280.0

Q ss_pred             ccccccccchHHHHHHHc---CCCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEEeeccchhcccC-CCCCCcEEEEEc
Q 006659          300 KAKSVLLGGLKDHLKTIR---RSRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASDLVDRQA-PIYREDTAVFVS  374 (636)
Q Consensus       300 ~~~~l~~~~l~~~~~~l~---~~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS  374 (636)
                      |.+.++.++++++++.|.   ++++|+|+|||+|+++|..+++++.++. ++++.+..++++.+... .++++|++|+||
T Consensus        18 t~~~l~~~~i~~~~~~i~~~~~a~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS   97 (347)
T 3fkj_A           18 QGMSVAHENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILAS   97 (347)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHSCCTTCSTTEEEEEEE
T ss_pred             HHhhcCHHHHHHHHHHHHhhCCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCeEEEeCcHHHHhhCcCCCCCCCEEEEEe
Confidence            457888999999999999   9999999999999999999999999987 89999999999876544 578999999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC---CcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          375 QSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG---AEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       375 ~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~---~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      +||+|++++++++.||++|+++|+||++++|+|++.||++|.++++   +|.++ .|++|+.    +++|++.++..++ 
T Consensus        98 ~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~g~~e~~~-~t~~~~~----l~llal~l~~~~~-  171 (347)
T 3fkj_A           98 QQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDP-AQQKAAY----SLWLALEILAQTE-  171 (347)
T ss_dssp             SSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCCCTTSCCCG-GGBHHHH----HHHHHHHHHHHHT-
T ss_pred             CCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccCCCCCccch-hHHHHHH----HHHHHHHHHHHhC-
Confidence            9999999999999999999999999999999999999999999998   55554 8888763    3344444443332 


Q ss_pred             cHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHH-HHHHHhcccccccccccccc
Q 006659          452 TQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGA-LKVKEVALMHSEGILAGEMK  529 (636)
Q Consensus       452 ~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~a-lKl~E~~~~~a~~~~~~Ef~  529 (636)
                      ..++++++.++|..+|+.++++++. +++++++|+++.+.++++++|+|++||+|+|+| |||+|++|+||++|+.+||+
T Consensus       172 ~~~~~~~~~~~l~~lp~~~~~~l~~~~~~~~~~a~~~~~~~~~~~lGrG~~~~~A~E~A~LKlkE~s~i~ae~~~a~E~~  251 (347)
T 3fkj_A          172 GYAQYDELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVYMMGSGPSFGAAHQESICILLEMQWINSASIHSGEYF  251 (347)
T ss_dssp             CCTTHHHHHHHHHTHHHHHHHHHHHTHHHHHHHHHHHTTCSEEEEEECGGGHHHHHHHHHHTHHHHHCCEEEEEETTGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHcCcCcceeeHHHhc
Confidence            2335677889999999999999985 788999999999999999999999999999999 89999999999999999999


Q ss_pred             ccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHH
Q 006659          530 HGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQ  609 (636)
Q Consensus       530 HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q  609 (636)
                      |||++++++++|||+|.++|+.++...++.+++++.|+++++|+.++.. .      +. + .|.+++.+.|+++++|+|
T Consensus       252 HGP~ali~~~~pvi~~~~~d~~~~~~~~~~~~~~~~g~~v~~i~~~~~~-~------~~-~-~~~~~~~l~pl~~~v~~Q  322 (347)
T 3fkj_A          252 HGPFEITEPGTPFILLQSSGRTRPLDDRAIRFIERYQGKLQLIDADKLG-I------QD-L-STDVGEYFCGLLHNCVLD  322 (347)
T ss_dssp             GTGGGGCCTTCEEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEEGGGGT-S------TT-T-CTTTGGGGHHHHHHHHHH
T ss_pred             CCcccccCCCceEEEEecCCchHHHHHHHHHHHHHhCCeEEEEeCCccc-c------cc-C-CCCcchhHHHHHHHHHHH
Confidence            9999999999999999998888877888888898889999999764321 1      11 1 256788999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCcce
Q 006659          610 LLAYHLTVLRGYNVDQPRNLAKS  632 (636)
Q Consensus       610 ~la~~lA~~~G~~pd~pr~l~k~  632 (636)
                      +++|++|..+|+|||+||||+||
T Consensus       323 lla~~~A~~~G~d~D~PR~l~Kv  345 (347)
T 3fkj_A          323 VYNLALATARNHPLTTRRYMWKV  345 (347)
T ss_dssp             HHHHHHHHHTTCCTTCCSSTTTS
T ss_pred             HHHHHHHHHhCcCCCCCCCCeee
Confidence            99999999999999999999997

>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}

Probab=100.00  E-value=2.6e-55  Score=466.33  Aligned_cols=340  Identities=17%  Similarity=0.205  Sum_probs=286.9

Q ss_pred             HHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHc--CCCeEEEEeechhHHHHHHHHHHHHHhcCCc
Q 006659          271 EHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIR--RSRRIVFIGCGTSYNAALAARPILEELSDLP  348 (636)
Q Consensus       271 ~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~--~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~  348 (636)
                      .+||+|||.|||+.+++++..+.+..          ..++++++.+.  ..++|+|+|||+|+++|..++++|.++.+++
T Consensus        18 ~~~m~kEI~eQP~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~g~~   87 (393)
T 3odp_A           18 GYITAKEICNQPKLWRETYEIILSQR----------EKLKSFLDNFAKKPNAKIVITGAGSSAFVGNSVVSYLNAKENIK   87 (393)
T ss_dssp             CHHHHHHHHTHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTSTTCEEEEECSTHHHHHHHTTHHHHHHHSSSE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHhCCC
Confidence            67999999999999999997654321          23444444443  3699999999999999999999999988998


Q ss_pred             EEEeeccchhcc---cCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHc--CCeEEEEEcCCCCccccccC-----eeEEcC
Q 006659          349 VTMEIASDLVDR---QAPIYREDTAVFVSQSGETADTLQALEYASEN--GALCVGITNTVGSAIARKTH-----CGVHIN  418 (636)
Q Consensus       349 ~~~~~~~e~~~~---~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~--g~~vi~IT~~~~s~La~~ad-----~~l~~~  418 (636)
                      +.....+++...   ....+++|++|+||+||+|+|++++++.||++  |+++|+||++++|+|++.||     +++.++
T Consensus        88 v~ai~~~~~~~~~~~~~~~~~~dlvI~iS~SGeT~e~l~al~~ak~~~~Ga~~iaIT~~~~S~La~~aD~~~~~~~i~~~  167 (393)
T 3odp_A           88 IEAIATTDIVSHPFYYLKKDEPTLLISCARSGNSPESTAAVTLAEKIVDDISHLIITCNSEGKLALHAKRNYNSFLLLMP  167 (393)
T ss_dssp             EEECCHHHHTTCGGGTCCTTSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHGGGSSSCEEEEECC
T ss_pred             eEEeCcHHHHhhhHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHhcCCCceEEEEcC
Confidence            876655443211   11127899999999999999999999999999  99999999999999999999     588888


Q ss_pred             CC-CcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEE
Q 006659          419 AG-AEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVF  496 (636)
Q Consensus       419 ~~-~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~l  496 (636)
                      .+ +|.++++|++|+++++++++|+...         ..+++.++|..+|+.++++++. .++++++|++  +.++++++
T Consensus       168 ~~~~E~~va~Tksft~ql~~l~ll~~~~---------~~~~~~~~l~~lp~~~~~~l~~~~~~~~~~a~~--~~~~~~~l  236 (393)
T 3odp_A          168 EESNDKGFAMTGSFSTMLLSCLLIFNLD---------KLESIGKQIESISMQGEKVLVNNVELMKKIVGE--KFKRTVYL  236 (393)
T ss_dssp             GGGSCCSSSCSHHHHHHHHHHHHTTCTT---------SHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTT--CCSEEEEE
T ss_pred             CccccccccccHHHHHHHHHHHHHHhhc---------cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc--CCCeEEEE
Confidence            87 7999999999999998877765422         2345678899999999999986 3778888876  88999999


Q ss_pred             eCCCCHHHHHHHHHHHHHhc--cccccccccccccccccccccCCCCeEEEEeCCcc-hHHHHHHHHHHHhcC--CeEEE
Q 006659          497 GRGYNYATALEGALKVKEVA--LMHSEGILAGEMKHGPLALVDENLPILVIATRDAC-FSKQQSVIQQLHARK--GRLIV  571 (636)
Q Consensus       497 G~G~~~~~A~e~alKl~E~~--~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~-~~~~~~~~~~~~~~g--~~v~v  571 (636)
                      |+|.+||+|+|+||||+|++  ++||++++.+||+|||+++++++++||+|.++|+. +...++++++++++|  +++++
T Consensus       237 GrG~~~~~A~E~ALKlkE~s~g~i~a~~~~~~e~~HGP~alvd~~~pvi~~~~~d~~t~~~~~~~~~ev~arg~~~~vi~  316 (393)
T 3odp_A          237 GAANAFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKSIIDDETLIVIFFSNDTYAREYEYDLLKEVYSQNGNHKVLA  316 (393)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTTSSSEEEEECHHHHTTTGGGGCCTTEEEEEECCSSHHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred             eCCcCHHHHHHHHHHHHHHhhccchheeecHhhheeccccccCCCceEEEEEcCCchhhHHHHHHHHHHHhcCCCceEEE
Confidence            99999999999999999999  49999999999999999999999999999998874 333456899999988  99999


Q ss_pred             EecCCCCcCCCCCCcceEEEcC-----CCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCC---CCccee
Q 006659          572 MCSKGDAASIFPGGSCRVIEVP-----QVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPR---NLAKSV  633 (636)
Q Consensus       572 i~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr---~l~k~v  633 (636)
                      |+.+++....  ...+..+.+|     .+++.+.|+++++|+|+|||++|+.+|+|||+||   +++|||
T Consensus       317 i~~~~~~~~~--~~~~~~i~~p~~~~~~~~~~l~pi~~~ip~Qllay~~A~~~G~dpD~Pr~~g~vnrVv  384 (393)
T 3odp_A          317 ISEYEDKLIE--DNSDYFIAINKEEQEYEDDSFLSLDYLLNAQMYAFINSMELGIGPDNPCPTGEVNRVV  384 (393)
T ss_dssp             EEEECCHHHH--TTCSEEEEEESSCCCCSSGGGGHHHHHHHHHHHHHHHHHHHTCCTTCSCTTCSSCSSC
T ss_pred             EEcCCcchhc--cCCcEEEEeCCccccCCChHHhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcCCcee
Confidence            9876643221  1246778888     7889999999999999999999999999999999   888887

>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}

Probab=100.00  E-value=7.7e-54  Score=454.37  Aligned_cols=337  Identities=17%  Similarity=0.209  Sum_probs=279.5

Q ss_pred             HHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHH-HHHcCC--CeEEEEeechhHHHHHHHHHHHHHhcCC
Q 006659          271 EHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHL-KTIRRS--RRIVFIGCGTSYNAALAARPILEELSDL  347 (636)
Q Consensus       271 ~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~-~~l~~~--~~I~i~G~G~S~~aa~~~~~~~~~~~~~  347 (636)
                      .+||+|||.|||+.+++++..+.+..          +.+..+. +.+.+.  ++|+|+|||+|+++|..+++++.++.++
T Consensus        15 ~~~m~kEI~eQP~~~~~tl~~~~~~~----------~~~~~~~~~~~~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~g~   84 (389)
T 3i0z_A           15 AEITTREIYQQPDVWREAFEFYQAKR----------EEIAAFLQEIADKHDYIKVILTGAGTSAYVGDTLLPYFKEVYDE   84 (389)
T ss_dssp             CHHHHHHHHTHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCSSEEEEEECSTHHHHHHHHHHHHHHHHSCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcc----------hhHHHHHHHHHhcCCCCeEEEEEechHHHHHHHHHHHHHHHhCC
Confidence            56999999999999999987654321          1233332 234444  7999999999999999999999998888


Q ss_pred             c---EEEeeccc-----hhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHc--CCeEEEEEcCCCCccccccCe----
Q 006659          348 P---VTMEIASD-----LVDRQAPIYREDTAVFVSQSGETADTLQALEYASEN--GALCVGITNTVGSAIARKTHC----  413 (636)
Q Consensus       348 ~---~~~~~~~e-----~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~--g~~vi~IT~~~~s~La~~ad~----  413 (636)
                      +   +......+     +.+..  .+++|++|++|+||+|++++++++.||++  |+++|+||++.+|+|++.||+    
T Consensus        85 ~~~~v~a~~~~~~~ase~~~~~--~~~~dl~i~iS~SG~T~e~~~al~~ak~~~~g~~~i~IT~~~~s~la~~ad~~~~~  162 (389)
T 3i0z_A           85 RKWNFNAIATTDIVANPATYLK--KDVATVLVSFARSGNSPESLATVDLAKSLVDELYQVTITCAADGKLALQAHGDDRN  162 (389)
T ss_dssp             TTEEEEECCHHHHTTCHHHHCC--TTSEEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHTSSSCTTE
T ss_pred             CCceEEeccccccccChHHhcC--CCCCcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHccccccc
Confidence            7   65443333     33322  27899999999999999999999999999  999999999999999999998    


Q ss_pred             -eEEcC-CCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCC
Q 006659          414 -GVHIN-AGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQ  491 (636)
Q Consensus       414 -~l~~~-~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~  491 (636)
                       .+.++ .++|.++++|++|++|++++++|+...      .   .+++.++|..+|+.++++++..+.++++|++  +.+
T Consensus       163 ~~i~~~~~~~E~~va~Tks~t~ql~~l~ll~~~~------~---~~~~~~~l~~lp~~~~~~l~~~~~i~~~a~~--~~~  231 (389)
T 3i0z_A          163 LLLLQPAVSNDAGFAMTSSFTSMMLTTLLVFDPT------E---FAVKSERFEVVSSLARKVLDKAEDVKELVDL--DFN  231 (389)
T ss_dssp             EEEECCGGGSCCSSSCSHHHHHHHHHHHHHHCCS------C---HHHHHHHHHHHHHHHHHHHHTHHHHHHHHTS--CCS
T ss_pred             eEEecccccccccccccHHHHHHHHHHHHHHHhc------C---HHHHHHHHHHHHHHHHHHHhChHHHHHHHhc--CCC
Confidence             88887 488999999999999998888776432      1   2345678899999999999876678888876  889


Q ss_pred             eEEEEeCCCCHHHHHHHHHHHHHhcc--ccccccccccccccccccccCCCCeEEEEeCCcchH-HHHHHHHHHHhc--C
Q 006659          492 SLLVFGRGYNYATALEGALKVKEVAL--MHSEGILAGEMKHGPLALVDENLPILVIATRDACFS-KQQSVIQQLHAR--K  566 (636)
Q Consensus       492 ~~~~lG~G~~~~~A~e~alKl~E~~~--~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~-~~~~~~~~~~~~--g  566 (636)
                      +++++|+|.+||+|+|+||||+|+++  +||++++.+||+|||++++++++|||+|.++|+... ..++++++++++  |
T Consensus       232 ~~~~lGrG~~y~~A~EgALKlkE~s~Gei~a~~~~~~e~kHGP~alid~~~pVi~~~~~d~~~~~~~~~~~~ev~arg~g  311 (389)
T 3i0z_A          232 RVIYLGAGPFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKSLINDNTVVLVFGTTTDYTRKYDLDLVREVAGDQIA  311 (389)
T ss_dssp             EEEEEESTHHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTTTGGGGCCTTEEEEEECCCSHHHHHHHHHHHHHHHHHTCS
T ss_pred             eEEEEcCCCCHHHHHHHHHHHHHHccCcccceeecHhhccccchhhcCCCceEEEEEcCCchhhHHHHHHHHHHHhccCC
Confidence            99999999999999999999999998  999999999999999999999999999999877422 235788999887  6


Q ss_pred             CeEEEEecCCCCcCCCCCCcceEEEcC-CCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCC---CCccee
Q 006659          567 GRLIVMCSKGDAASIFPGGSCRVIEVP-QVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPR---NLAKSV  633 (636)
Q Consensus       567 ~~v~vi~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr---~l~k~v  633 (636)
                      +++++|+.++.. ..  ...+..+.+| .+++.+.|+++++|+|+|||++|+.+|+|||+||   +++|||
T Consensus       312 ~~vi~i~~~~~~-~~--~~~~~~i~~~~~~~~~l~pl~~~vp~QllAy~~A~~rG~dpD~PR~~g~vnrVv  379 (389)
T 3i0z_A          312 RRVVLLSDQAFG-LE--NVKEVALGCGGVLNDIYRVFPYIVYAQLFALLTSLKVENKPDTPSPTGTVNRVV  379 (389)
T ss_dssp             SEEEEEESSCCC-CT--TCEEEECCCSSCSCGGGGHHHHHHHHHHHHHHHHHHTTCCTTSCCTTSSSCSSC
T ss_pred             CeEEEEECCCcc-cc--cCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCccc
Confidence            999999986532 21  1122233333 6788999999999999999999999999999999   888887

>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}

Probab=100.00  E-value=3.8e-54  Score=449.25  Aligned_cols=311  Identities=21%  Similarity=0.313  Sum_probs=272.0

Q ss_pred             ccchHHHHHHHc--CCCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCCHH
Q 006659          306 LGGLKDHLKTIR--RSRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       306 ~~~l~~~~~~l~--~~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e  381 (636)
                      .++++++++.|.  ++++|+|+|||+|+++|..+++++.++. ++++.+..++++.+... .++++|++|++|+||+|++
T Consensus        10 ~~~i~~~v~~i~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T~e   89 (329)
T 3eua_A           10 NREVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNTPE   89 (329)
T ss_dssp             CHHHHHHHHHHTTCCCCEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHHCCTTCSTTEEEEEEESSSCCHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEEEccHHHHhcCccCCCCCcEEEEEcCCCCCHH
Confidence            367889999998  8999999999999999999999999987 89999999999876544 5789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIID  461 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~  461 (636)
                      ++++++.||++|+++|+||++++|+|++.||++|.+++++|.+++.|+ |+    .+++|++.++...+ ..++++++.+
T Consensus        90 ~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~e~~va~t~-~~----~l~~la~~l~~~~~-~~~~~~~~~~  163 (329)
T 3eua_A           90 TVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGDEALAINTN-YG----VLYQIVFGTLQVLE-NNTKFEQAIE  163 (329)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCSTTCCGGGSH-HH----HHHHHHHHHHHHHH-CCSCHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCCccchhhHH-HH----HHHHHHHHHHHHhc-ChHHHHHHHH
Confidence            999999999999999999999999999999999999999999887664 43    33333443333221 1234567888


Q ss_pred             HHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHH-HHHHHhccccccccccccccccccccccCC
Q 006659          462 GLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGA-LKVKEVALMHSEGILAGEMKHGPLALVDEN  539 (636)
Q Consensus       462 ~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~a-lKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~  539 (636)
                      +|..+|+.++++++. +++++++|+++.+.++++++|+|++||+|+|+| |||+|++|+||++|+.+||+|||+++++++
T Consensus       164 ~l~~lp~~~~~~l~~~~~~~~~~a~~~~~~~~~~~lGrG~~~~~A~E~A~LKlkE~s~i~ae~~~a~E~~HGP~alid~~  243 (329)
T 3eua_A          164 GLDQLQAVYEKALKQEADNAKQFAKAHEKESIIYTMASGANYGVAYSYSICILMEMQWIHSHAIHAGEYFHGPFEIIDES  243 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSBCEEEECGGGHHHHHHHHHTTTHHHHCCBCCEEETTGGGGTGGGGCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcCHHHHHHHHHHHHHHHcccCcccccHHHhccCcHhhccCC
Confidence            999999999999985 788999999999999999999999999999999 899999999999999999999999999999


Q ss_pred             CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEc-CCCCcchhhHHHHHHHHHHHHHHHHH
Q 006659          540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEV-PQVEDCLQPVINIVPLQLLAYHLTVL  618 (636)
Q Consensus       540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~v~~q~la~~lA~~  618 (636)
                      +|||+|.++|+.++...++.++++..|+++++|+.++.. .      .   .+ |.+++.+.|+++++|+|+++|++|..
T Consensus       244 ~pvi~~~~~~~~~~~~~~~~~~~~~~g~~v~~i~~~~~~-~------~---~~~~~~~~~l~pl~~~~~~Qlla~~~a~~  313 (329)
T 3eua_A          244 VPFIILLGLDETRPLEERALTFSKKYGKKLTVLDAASYD-F------T---AIDDSVKGYLAPLVLNRVLRSYADELAEE  313 (329)
T ss_dssp             SCEEEEECSSTTHHHHHHHHHHHHHHCCCEEEEEGGGSC-C------T---TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHHcCCeEEEEeCCccc-c------c---CCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888877778888888889999999864422 1      1   13 34667899999999999999999999


Q ss_pred             cCCCCCCCCCCcce
Q 006659          619 RGYNVDQPRNLAKS  632 (636)
Q Consensus       619 ~G~~pd~pr~l~k~  632 (636)
                      +|+|||+||||+||
T Consensus       314 ~G~d~D~PR~l~Kv  327 (329)
T 3eua_A          314 RNHPLSHRRYMWKV  327 (329)
T ss_dssp             TTCCTTCCSSTTTS
T ss_pred             hCcCCCCCCCCccc
Confidence            99999999999997

>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}

Probab=100.00  E-value=3.8e-51  Score=431.55  Aligned_cols=309  Identities=17%  Similarity=0.265  Sum_probs=269.8

Q ss_pred             ccchHHHHHHHcC--CCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCCHHH
Q 006659          306 LGGLKDHLKTIRR--SRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGETADT  382 (636)
Q Consensus       306 ~~~l~~~~~~l~~--~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e~  382 (636)
                      .+.++++++.|.+  +++|+++|+|+|+++|..+++++.++.++++.+..++++.+... .++++|++|++|+||+|+++
T Consensus        39 ~~~i~~~~~~i~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~t~e~  118 (355)
T 2a3n_A           39 RQKAEQVADEIYQAGFSSLFFASVGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKES  118 (355)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEEEHHHHHHHCCTTCCTTCEEEEECSSSCCHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEccHHHHHHHHHHHHHHhhcCCeEEEcCcHHHHhhchhcCCCCCEEEEEeCCCCCHHH
Confidence            4678899999887  99999999999999999999999998889999888888865544 45899999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006659          383 LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDG  462 (636)
Q Consensus       383 i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~  462 (636)
                      +++++.||++|+++|+||++.+|||++.||++|.++.+.+.        ++++.+++++++.++...+ ..+++++..+.
T Consensus       119 ~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~~~~--------~~~~~~~~ll~~~l~~~~~-~~~~~~~~~~~  189 (355)
T 2a3n_A          119 VAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNGV--------EYEYMLLYWLFFRVLSRNN-EFASYDRFASQ  189 (355)
T ss_dssp             HHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCSSCH--------HHHHHHHHHHHHHHHHHTT-SCTTHHHHHHH
T ss_pred             HHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeCCCcch--------hHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence            99999999999999999999999999999999999865432        3334444445555444433 22346677889


Q ss_pred             HhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHH-HHHHHhccccccccccccccccccccccCCC
Q 006659          463 LCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGA-LKVKEVALMHSEGILAGEMKHGPLALVDENL  540 (636)
Q Consensus       463 l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~a-lKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~  540 (636)
                      |+++++.++++++. +++++++|+++.+.++++++|+|++||+|+|++ |||+|++|+||++++++||+|||++++++++
T Consensus       190 l~~l~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~allklkE~s~i~a~~~~~~E~~HGp~ali~~~~  269 (355)
T 2a3n_A          190 LEILPANLLKAKQKFDPQADAIASRYHNSDYMMWVGGAEMWGEVYLFSMCILEEMQWKRTRPVSSAEFFHGALELLEKDV  269 (355)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEECGGGHHHHHHHHHHTHHHHHCCCEEEEEHHHHTTTGGGGCCTTC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcEEEEcCCcCHHHHHHHHHHHHHHHcccccccccHHHhcCCcceeecCCc
Confidence            99999999999976 788999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcC-CCCcchhhH-HHHHHHHHHHHHHHHH
Q 006659          541 PILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVP-QVEDCLQPV-INIVPLQLLAYHLTVL  618 (636)
Q Consensus       541 ~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~-~~~v~~q~la~~lA~~  618 (636)
                      +||+|.++|+.++++.+++++++++|+++++|++++..          .+.+| .+++.+.|+ ++++|+|+++|++|+.
T Consensus       270 ~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~~i~~~~~~----------~~~~~~~~~~~l~pl~~~~~~~Qlla~~~A~~  339 (355)
T 2a3n_A          270 PLILVKGEGKCRALDERVERFASKITDNLVVIDPKAYA----------LDGIDDEFRWIMAPCVVSTLLVDRLAAHFEKY  339 (355)
T ss_dssp             CEEEECCSSTTHHHHHHHHHHHHHHCSCEEEECGGGSC----------CTTSCGGGHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHcCCeEEEEECCCcc----------ccCCCcchHhHhccHHHHHHHHHHHHHHHHHH
Confidence            99999998888889999999999999999999865421          12345 456789999 9999999999999999


Q ss_pred             cCCCCCCCCCCccee
Q 006659          619 RGYNVDQPRNLAKSV  633 (636)
Q Consensus       619 ~G~~pd~pr~l~k~v  633 (636)
                      +|+|||+||||+||+
T Consensus       340 ~G~d~D~pr~l~kv~  354 (355)
T 2a3n_A          340 TGHSLDIRRYYRQFD  354 (355)
T ss_dssp             HCCCTTCCSSTTTSC
T ss_pred             HCcCCCCCCCCcccc
Confidence            999999999999986

>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}

Probab=100.00  E-value=2.1e-52  Score=445.57  Aligned_cols=345  Identities=18%  Similarity=0.214  Sum_probs=275.9

Q ss_pred             eeccchhhhhcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHH-HHHcCC-CeEEEEeechhHHHH
Q 006659          257 ILEMEVEQINKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHL-KTIRRS-RRIVFIGCGTSYNAA  334 (636)
Q Consensus       257 ~~~~~~~~~~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~-~~l~~~-~~I~i~G~G~S~~aa  334 (636)
                      |.+|+....++   ++||++||.|||+++++++..+.+.          ...+.+++ +.+.++ ++|+|+|||+|+++|
T Consensus         2 ~~~~~~~~~~~---~~~m~kEI~eqP~~~~~~l~~~~~~----------~~~l~~~~~~~l~~~~~~I~i~G~GtS~~~a   68 (384)
T 3c3j_A            2 PENYTPAAAAT---GTWTEEEIRHQPRAWIRSLTNIDAL----------RSALNNFLEPLLRKENLRIILTGAGTSAFIG   68 (384)
T ss_dssp             --CCCCCCCTT---CCHHHHHHHTHHHHHHHHHHHHHHH----------HHHHHHHHHHHHTCTTCEEEEECSTHHHHHH
T ss_pred             CccCChhHhcC---chhHHHHHHHHHHHHHHHHHhhhcc----------hhhHHHHHHHHHhcCCCEEEEEEehHHHHHH
Confidence            45667666665   6689999999999999998764210          12344444 347788 999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEeeccchhccc-CCC--CCCcEEEEEcCCCCCHHHHHHHHHHHHc--CCeEEEEEcCCCCcccc
Q 006659          335 LAARPILEELSDLPVTMEIASDLVDRQ-API--YREDTAVFVSQSGETADTLQALEYASEN--GALCVGITNTVGSAIAR  409 (636)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~--~~~dlvI~iS~SG~t~e~i~al~~ak~~--g~~vi~IT~~~~s~La~  409 (636)
                      ..+++++.+..++++.+..+.++.... ...  +++|++|+||+||+|++++++++.||++  |+++|+||++.+|+|++
T Consensus        69 ~~~~~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~~ga~~iaIT~~~~S~La~  148 (384)
T 3c3j_A           69 DIIAPWLASHTGKNFSAVPTTDLVTNPMDYLNPAHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGALYQ  148 (384)
T ss_dssp             HHHHHHHHHHHCSEEEECCHHHHHHCHHHHCCTTSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHH
T ss_pred             HHHHHHHHHHhCCcEEEeccHHHHhChhhhhCCCCCeEEEEEeCCcCCHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHh
Confidence            999999998778888887654432211 112  6899999999999999999999999999  99999999999999999


Q ss_pred             ccC-----eeEEcCC-CCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHH-
Q 006659          410 KTH-----CGVHINA-GAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKV-  482 (636)
Q Consensus       410 ~ad-----~~l~~~~-~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-  482 (636)
                      .||     ++|.++. ++|.+++.|++|+++++++++|+.......         +  ++..+|+.++++++..+.+++ 
T Consensus       149 ~ad~~~~~~~l~~~~~~~e~~~a~t~s~t~~l~~l~~L~~~~~~~~---------~--~l~~l~~~~~~~l~~~~~~~~~  217 (384)
T 3c3j_A          149 NAINSDNAFALLMPAETHDRGFAMTSSITTMMASCLAVFAPETINS---------Q--TFRDVADRCQAILTSLGDFSEG  217 (384)
T ss_dssp             HHHTCTTBCCEECCGGGSCCSSSCSHHHHHHHHHHHHHHCTTTSST---------T--TTHHHHHHHHHHHHHTTTSTTC
T ss_pred             hhccCCcEEEEEecCCCcceeeeehHHHHHHHHHHHHHHHhccccH---------H--HHHHHHHHHHHHHHhHHHHHHH
Confidence            999     9999987 789999999999999999888776431110         1  466777777777753333344 


Q ss_pred             -HHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcc--ccccccccccccccccccccCCCCeEEEEeCCcchHH-HHHH
Q 006659          483 -LAKQLIAEQSLLVFGRGYNYATALEGALKVKEVAL--MHSEGILAGEMKHGPLALVDENLPILVIATRDACFSK-QQSV  558 (636)
Q Consensus       483 -~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~--~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~-~~~~  558 (636)
                       +|..  +.++++++|+|.+||+|+|++|||+|+++  +||++++.+||+|||+++++++++|++|.++|+..++ +.++
T Consensus       218 ~~a~~--~~~~~~~lG~G~~~~~A~E~aLKl~E~s~g~i~a~~~~~~e~~HGp~~lv~~~~~vi~~~~~~~~~~~~~~~~  295 (384)
T 3c3j_A          218 VFGYA--PWKRIVYLGSGGLQGAARESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHPYTRQYDLDL  295 (384)
T ss_dssp             TTCCC--CCSEEEEEESTTHHHHHHHHHHHHHHHTTTSSEEEEECHHHHTTTGGGGCCTTEEEEEECCSSTTHHHHHHHH
T ss_pred             HHHHh--cCCeEEEECCCCCHHHHHHHHHHHHHHhhccchhccccHhhcccCCHHHcCCCccEEEEEcCCchhhHHHHHH
Confidence             4433  67899999999999999999999999997  9999999999999999999999999999998876444 7889


Q ss_pred             HHHHHhc--CCeEEEEecCCCCcCCCCCCcceEEEcCC---CCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc
Q 006659          559 IQQLHAR--KGRLIVMCSKGDAASIFPGGSCRVIEVPQ---VEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAK  631 (636)
Q Consensus       559 ~~~~~~~--g~~v~vi~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k  631 (636)
                      +++++++  |+++++|+.++.. ..   ..+..+.+|.   .++.+.|+++++|+|+|||++|+.+|+|||+|||+++
T Consensus       296 ~~ev~ar~~~~~v~~i~~~~~~-~~---~~~~~i~~p~~~~~~~~l~pl~~iv~~Qlla~~~A~~~G~dpD~Pr~~~~  369 (384)
T 3c3j_A          296 LAELRRDNQAMRVIAIAAESSD-IV---AAGPHIILPPSRHFIDVEQAFCFLMYAQTFALMQSLHMGNTPDTPSASGT  369 (384)
T ss_dssp             HHHHHHHTCSSEEEEEESSCCH-HH---HTSSEEECCCCSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCC-----
T ss_pred             HHHHHhCcCCCeEEEEeCCCcc-cc---cCCcEEEecCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCc
Confidence            9999877  8999999976421 10   0134577886   6788999999999999999999999999999999993

>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*

Probab=100.00  E-value=9.2e-44  Score=366.81  Aligned_cols=294  Identities=14%  Similarity=0.111  Sum_probs=234.1

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEE
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELS-DLPVTM  351 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~  351 (636)
                      .|++||.|||+.+++++... ..        +.....   ...+.++++|+++|+|+|+++|..+++++.+.. +.++.+
T Consensus         3 ~m~~eI~eqP~~~~~~~~~~-~~--------~~~~~~---~~~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~   70 (302)
T 1tzb_A            3 QLLQDYLNWENYILRRVDFP-TS--------YVVEGE---VVRIEAMPRLYISGMGGSGVVADLIRDFSLTWNWEVEVIA   70 (302)
T ss_dssp             HHHHHHHTGGGGCCSCCCCC-SE--------EEETTE---EEECCCCSEEEEECCHHHHHHHHHHHHHHHHTTCSSEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHH-Hh--------cccccc---cccccCCCEEEEEEecHHHHHHHHHHHHHHhhcCCceEEE
Confidence            69999999999999887642 11        111100   011347899999999999999999999998877 888888


Q ss_pred             eeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhH
Q 006659          352 EIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAY  431 (636)
Q Consensus       352 ~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~  431 (636)
                      ..++++      .+++|++|++|+||+|++++++++.||++|+++|+||++.  +|++. |+.+.  .++|.. ..+.+|
T Consensus        71 ~~~~~~------~~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~~~iaIT~~~--~La~~-~~~l~--~~~e~~-a~~~s~  138 (302)
T 1tzb_A           71 VKDYFL------KARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGG--RLAQM-GVPTV--IVPKAS-APRAAL  138 (302)
T ss_dssp             ECSSCC------CCSSSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESST--TGGGS-SSCEE--ECCCCS-SGGGGH
T ss_pred             eCCcCC------CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEECCCc--hHHHC-CeeEE--eCCCCC-ccHHHH
Confidence            777665      2789999999999999999999999999999999999997  99999 87773  345544 344499


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHH
Q 006659          432 TSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALK  511 (636)
Q Consensus       432 ~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alK  511 (636)
                      +++++.+++|...++...             +. +|+.++..+  .+.++++++++ + +.++++|+|++||+|+|++||
T Consensus       139 ~~~l~~~~~l~~~~~~~~-------------~~-~~~~~~~~~--~~~~~~la~~~-~-~~~~~lG~g~~~~~A~e~alk  200 (302)
T 1tzb_A          139 PQLLTAALHVVAKVYGID-------------VK-IPEGLEPPN--EALIHKLVEEF-Q-KRPTIIAAESMRGVAYRVKNE  200 (302)
T ss_dssp             HHHHHHHHHHHHHHHCCC-------------CC-CCSCCCCCC--HHHHHHHHHHH-T-TCCEEEEEGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCc-------------hH-HHHHHhhhC--chHHHHHHHHh-C-CeEEEEeCCcchHHHHHHHHH
Confidence            999888777766654211             01 222222111  34567788888 6 899999999999999999999


Q ss_pred             HHHhccccccccccccccccccccccCCCCeEEEEe-CCc-chHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceE
Q 006659          512 VKEVALMHSEGILAGEMKHGPLALVDENLPILVIAT-RDA-CFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRV  589 (636)
Q Consensus       512 l~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~-~~~-~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~  589 (636)
                      |+|++|+|+++++.+||+|||++.+++  ++++|.+ +++ ..++..+++++++  |+++++|+.++             
T Consensus       201 l~E~~~~~a~~~~~~e~~HGp~~~i~~--~vi~~~~~~~~~~~~~~~~~~~e~~--g~~v~~i~~~~-------------  263 (302)
T 1tzb_A          201 FNENAKIEPSVEILPEAHHNWIEGSER--AVVALTSPHIPKEHQERVKATVEIV--GGSIYAVEMHP-------------  263 (302)
T ss_dssp             HHHTTCCCCEEEEETGGGGTHHHHCCS--CEEEEECSSSCHHHHHHHHHHHHHH--CCEEEECCCSH-------------
T ss_pred             HHHhcCcceeccccchhcccceEEecc--cEEEEECCCccHHHHHHHHHHHHHh--CceEEEEEcCC-------------
Confidence            999999999999999999999999999  8888887 555 5678888888887  99999987532             


Q ss_pred             EEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceee
Q 006659          590 IEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVT  634 (636)
Q Consensus       590 ~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~  634 (636)
                            .++++   +++|+|+++||+|+.+|+|||+||||+|+..
T Consensus       264 ------~~~l~---~~~~~q~la~~~A~~~G~dpd~pr~l~k~~~  299 (302)
T 1tzb_A          264 ------KGVLS---FLRDVGIASVKLAEIRGVNPLATPRIDALKR  299 (302)
T ss_dssp             ------HHHHH---HHHHHHHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred             ------CCcch---hhHHHHHHHHHHHHHhCcCCCCcchHHHHHH
Confidence                  01333   8899999999999999999999999999853

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*

Probab=100.00  E-value=5.1e-38  Score=312.69  Aligned_cols=201  Identities=39%  Similarity=0.674  Sum_probs=170.0

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCee-EeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGIC-IDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVY   80 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f   80 (636)
                      |||||+++.+      +....+..|+.+|+|||||++|++ +.+++               .+.++|+.|+++++    +
T Consensus         1 CGI~G~~~~~------~~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~---------------~~~~~k~~g~~~~~----~   55 (240)
T 1xff_A            1 CGIVGAIAQR------DVAEILLEGLRRLEYRGYDSAGLAVVDAEG---------------HMTRLRRLGKVQML----A   55 (240)
T ss_dssp             CEEEEEECSS------CCHHHHHHHHHHHGGGCCSEEEEEEECTTC---------------CEEEEEEESCHHHH----H
T ss_pred             CcEEEEEcCc------chHHHHHHHHHHHHhcCCCcCCEEEEecCC---------------cEEEEEcCCcHHHH----H
Confidence            9999999643      224678899999999999999999 65443               79999999998864    3


Q ss_pred             HHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhH
Q 006659           81 EEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEV  160 (636)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~  160 (636)
                      +.+.      ...+.++++|||+||||+|.++..|+|||..   ++++++|||+|+|+.+||++|...|+.|.+.||||+
T Consensus        56 ~~~~------~~~~~~~~~igH~R~at~g~~~~~n~qP~~~---~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEv  126 (240)
T 1xff_A           56 QAAE------EHPLHGGTGIAHTRWATHGEPSEVNAHPHVS---EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEV  126 (240)
T ss_dssp             HHHH------HSCCCCSEEEEEEECCSSSCSSTTTSSCEEE---TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHH
T ss_pred             hhhh------cccCCccEEEEEEeccCCCCCCcccCCCccc---CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHH
Confidence            4322      1245689999999999999888899999986   489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccc
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFD  235 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~  235 (636)
                      |+++|.+.... +       .++.+++++++++|+|+|||++||...+++||++||+|||++|..+     +|+..++..
T Consensus       127 i~~l~~~~~~~-g-------~~~~~ai~~~~~~l~G~fa~~i~d~~~~~~l~~~Rd~~PL~~~~~~~~~~~aSE~~al~~  198 (240)
T 1xff_A          127 IAHLVNWELKQ-G-------GTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLP  198 (240)
T ss_dssp             HHHHHHHHHHT-S-------SCHHHHHHHHGGGCCEEEEEEEEETTCTTCEEEEEEBSCCEEEECSSCEEEESSGGGTTT
T ss_pred             HHHHHHHHHhc-C-------CCHHHHHHHHHHhcccceEEEEEecCCCCEEEEEECCCceEEEEeCCEEEEEECHHHHHh
Confidence            99999876532 2       5799999999999999999999996436899999999999999987     455556654


Q ss_pred             ee----eccCCCe
Q 006659          236 NA----KGRNGGT  244 (636)
Q Consensus       236 ~~----~~~~g~~  244 (636)
                      .+    .++||++
T Consensus       199 ~~~~~~~l~pG~~  211 (240)
T 1xff_A          199 VTRRFIFLEEGDI  211 (240)
T ss_dssp             TCSEEEECCTTCE
T ss_pred             hCCeEEEECCCEE
Confidence            32    8999999

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*

Probab=100.00  E-value=6.2e-35  Score=320.17  Aligned_cols=216  Identities=21%  Similarity=0.309  Sum_probs=171.6

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++..      ++...++.||.+|||||||++||++.+.+              +.+.++|+.|.+++    +|+
T Consensus         1 CGI~G~~~~~------~~~~~l~~~l~~LqhRG~D~aGi~~~~~~--------------~~~~~~k~~g~v~~----vf~   56 (504)
T 1ecf_A            1 CGIVGIAGVM------PVNQSIYDALTVLQHRGQDAAGIITIDAN--------------NCFRLRKANGLVSD----VFE   56 (504)
T ss_dssp             CEEEEEECSS------CCHHHHHHHHHHTGGGCCSEEEEEEECTT--------------SCEEEEEEESCHHH----HCC
T ss_pred             CEEEEEEcCh------hHHHHHHHHHHHHHhcCCCcceEEEEcCC--------------CcEEEEecCCchhh----hcC
Confidence            9999999642      34567889999999999999999998632              26899999998875    565


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCC-CccccCCHhhH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHG-FTFESETDTEV  160 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g-~~~~~~tDsE~  160 (636)
                      +..   +   ..+.|+++|||+||+|+|.++..|+|||.....++++++|||+|+|+.+||++|...| +.|.+.||||+
T Consensus        57 ~~~---~---~~l~g~~~igH~R~sT~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEv  130 (504)
T 1ecf_A           57 ARH---M---QRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEI  130 (504)
T ss_dssp             HHH---H---HHCCSSEEEEEEECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHH
T ss_pred             ccc---c---ccCCCCEEEEEEccCcCCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHH
Confidence            432   1   2467999999999999998888999999876334599999999999999999998764 77899999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec------c----C
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK------D----G  227 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~------~----~  227 (636)
                      |+++|.+.+..+|. ...+..++.+++++++++|+|+|||++|+.  .++||++||+   |||++|..      .    +
T Consensus       131 i~~l~~~~~~~~g~-~~~~~~~~~~a~~~~~~~l~G~fa~v~~~~--~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~A  207 (504)
T 1ecf_A          131 LLNIFASELDNFRH-YPLEADNIFAAIAATNRLIRGAYACVAMII--GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVA  207 (504)
T ss_dssp             HHHHHHHHHTTCCS-SSCCHHHHHHHHHHHHHHCCEEEEEEEEET--TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEE
T ss_pred             HHHHHHHHHHhccc-cccccccHHHHHHHhhhhcCccceEEEEEc--CCeEEEEECCCCCCceEEeecccCCCceEEEEE
Confidence            99999987654331 001113689999999999999999999974  3589999999   99999986      2    3


Q ss_pred             cccccccc-----eeeccCCCe--eeCCCc
Q 006659          228 AVSILKFD-----NAKGRNGGT--YARPAS  250 (636)
Q Consensus       228 ~~~~~~~~-----~~~~~~g~~--~~~~~~  250 (636)
                      |+..++..     ...++||++  +..+|.
T Consensus       208 SE~~al~~~~~~~v~~l~PGe~v~i~~~g~  237 (504)
T 1ecf_A          208 SESVALDTLGFDFLRDVAPGEAIYITEEGQ  237 (504)
T ss_dssp             SSTHHHHHHTCEEEEECCTTEEEEEETTCC
T ss_pred             eCchHhhccCccEEEECCCCeEEEEeCCCc
Confidence            45445432     238999999  445664

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*

Probab=100.00  E-value=1e-33  Score=307.61  Aligned_cols=199  Identities=27%  Similarity=0.420  Sum_probs=164.4

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++.+      +....++.||.+|+|||||++|+++.++.               .+.++|+.|.+++    +|.
T Consensus         1 CGI~G~~~~~------~~~~~~~~~l~~L~hRG~D~~Gi~~~~~~---------------~~~~~k~~g~v~~----~~~   55 (459)
T 1ao0_A            1 CGVFGIWGHE------EAPQITYYGLHSLQHRGQEGAGIVATDGE---------------KLTAHKGQGLITE----VFQ   55 (459)
T ss_dssp             CEEEEEESCT------BHHHHHHHHHHHTGGGCCSEEEEEEECSS---------------CEEEEEEESCHHH----HTT
T ss_pred             CEEEEEECCc------chHHHHHHHHHHHHhcCCCcCCEEEEeCC---------------eEEEEecCCcHhh----hcc
Confidence            9999999532      34567889999999999999999998754               7999999998775    443


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC--CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG--AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~--~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      +   ..+   ..+.++++|||+||+|+|.++..|+|||...  ..++++++|||+|+|+.+||++|...|+.|.+.||||
T Consensus        56 ~---~~l---~~l~g~~~igH~R~at~g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsE  129 (459)
T 1ao0_A           56 N---GEL---SKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTE  129 (459)
T ss_dssp             S---SCT---TTCCBSEEEEEEECCC----CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHH
T ss_pred             h---hhh---hccCCCEEEEEEecCCCCCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHH
Confidence            2   111   2467999999999999998878899999873  2578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI  231 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~  231 (636)
                      +|+++|.    +|+      ..++.+++++++++|+|+|||++||   +++||++||+   |||++|..+     +|+..
T Consensus       130 vi~~l~~----~~~------~~~~~~a~~~~~~~l~G~fa~~i~d---~~~l~~~RD~~G~rPL~~~~~~~~~~~ASE~~  196 (459)
T 1ao0_A          130 VLAHLIK----RSG------HFTLKDQIKNSLSMLKGAYAFLIMT---ETEMIVALDPNGLRPLSIGMMGDAYVVASETC  196 (459)
T ss_dssp             HHHHHHH----TCC------CSSHHHHHHHHHTTCCEEEEEEEEC---SSEEEEEECTTCCSCCEEEEETTEEEEESSTH
T ss_pred             HHHHHHH----Hhc------cCCHHHHHHHHHHhhccceEEEEEe---CCEEEEEECCCCCCCeEEEecCCEEEEEECch
Confidence            9999998    443      1479999999999999999999999   5899999999   999999987     45554


Q ss_pred             cccce-----eeccCCCe
Q 006659          232 LKFDN-----AKGRNGGT  244 (636)
Q Consensus       232 ~~~~~-----~~~~~g~~  244 (636)
                      ++...     ..++||++
T Consensus       197 al~~~~~~~i~~l~pG~~  214 (459)
T 1ao0_A          197 AFDVVGATYLREVEPGEM  214 (459)
T ss_dssp             HHHHHTCEEEEECCTTEE
T ss_pred             HHhcCCCceEEEECCCEE
Confidence            55332     28999999

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1

Probab=99.96  E-value=1.3e-31  Score=268.11  Aligned_cols=176  Identities=19%  Similarity=0.182  Sum_probs=130.9

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhccccC------CCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchh
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYRG------YDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIES   74 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG------~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~   74 (636)
                      ||||||+++..+      .  .++.+|.+|||||      +|||||+++++.               .+.++|+.|++.+
T Consensus         1 MCgi~G~~~~~~------~--~~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~---------------~~~~~k~~g~v~~   57 (257)
T 1te5_A            1 MCELLGMSANVP------T--DIVFSFTGLMQRGGGTGPHRDGWGIAFYEGR---------------GVRLFQDPLASVD   57 (257)
T ss_dssp             -CCEEEEEEEEE------E--ECEEEECCCCCCSSSSSSSBCEEEEEEEETT---------------EEEEEEECSBSSC
T ss_pred             CCeEEEEEcCCC------c--cHHHHHHHHHhccCCCCCCCCeEEEEEEeCC---------------ceEEEECCCcccc
Confidence            999999996431      1  2344899999999      799999999764               6999999998764


Q ss_pred             hhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCccc
Q 006659           75 LVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFE  153 (636)
Q Consensus        75 l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~  153 (636)
                      -.  ..+.+.+      ..++|+++|||+||||+|.++..|+|||... ++++|+|+|||+|.|+.+ |.+    ++.|.
T Consensus        58 ~~--~~~~l~~------~~l~g~~~IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~----~~~~~  124 (257)
T 1te5_A           58 SE--VARLVQR------FPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPG----FYRPV  124 (257)
T ss_dssp             CH--HHHHHHH------SCCEEEEEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCC----SSCCS
T ss_pred             ch--HHHHHhh------CCccccEEEEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhc----cCCcc
Confidence            11  1121110      1457999999999999999999999999976 456899999999999998 643    45689


Q ss_pred             cCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhh--hhhheeEEecCCCCeEEEEEc
Q 006659          154 SETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLE--GAYALIFKSQHYPNELIACKR  216 (636)
Q Consensus       154 ~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--G~~a~~~~d~~~~~~l~~~Rd  216 (636)
                      ++||||+|+++|.+.+.+.+ ++......+.++++++.+.+.  |.|+|++.|   ++.||++||
T Consensus       125 s~TDSEvi~~li~~~~~~~~-~~~~~~~a~~~al~~l~~~~~~~G~~n~~l~~---g~~l~a~rd  185 (257)
T 1te5_A          125 GETDSEAAFCDLLNRVRRAF-PEPVPVEVLLPVLISACDEYRKKGVFNALISD---GDWLFTFCS  185 (257)
T ss_dssp             SCCHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHHHHHHHHHHTTBCCEEEEES---SSCEEEECS
T ss_pred             cCCHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhcCcEEEEEEc---CCEEEEEEc
Confidence            99999999999998775321 000000123444444445555  999999988   689999999

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}

Probab=99.96  E-value=1.3e-29  Score=255.07  Aligned_cols=204  Identities=19%  Similarity=0.142  Sum_probs=130.4

Q ss_pred             CceEEEEEecccccchhhHHHHHHHHHHhcccc--------CCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccc
Q 006659            1 MCGIFAYLNYGVNRERRYILQVLFNGLRRLEYR--------GYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNI   72 (636)
Q Consensus         1 McGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~R--------G~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~   72 (636)
                      ||++||+...+..  -.+........|..+.++        ++|||||+++++.              +.+.++|+++++
T Consensus         3 MCR~~~y~g~~~~--l~~ll~~p~~sL~~qs~~~~~~~~~~~~Dg~GIa~~~~~--------------~~~~~~r~~~p~   66 (274)
T 3mdn_A            3 LCRWAAYHGTPIF--LEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDAR--------------PEPGLYRDVYPA   66 (274)
T ss_dssp             -CCEEEEEEEEEE--GGGTC------------------------CEEEEEESSS--------------SSCEEEEESSCG
T ss_pred             ccceeeecCCCcc--HHHHHhCccccHHHHhhhhhhcCCCCCCCeeEEEEEcCC--------------CcEEEEecCCcc
Confidence            9999999963211  112222233345444444        7899999999763              268999999954


Q ss_pred             hhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCC--C
Q 006659           73 ESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHG--F  150 (636)
Q Consensus        73 ~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g--~  150 (636)
                      -+.  ..++.+.       ...+++++|||+||||.|..+..|+|||..+   +|+|+|||+|+|+.+||++|...|  +
T Consensus        67 ~~~--~~l~~l~-------~~~~g~~~igHvR~AT~g~~s~~n~qPf~~g---~~~~~HNG~I~N~~~Lr~~L~~~g~~~  134 (274)
T 3mdn_A           67 WSD--PNLRAVA-------HHVRSGLFLSHVRASTGSCISRNNCHPFAAR---RWCFMHNGQVGGFEAFRKQADMAIADE  134 (274)
T ss_dssp             GGC--HHHHHHH-------HHCEEEEEEEEC------------CCCEEET---TEEEEEEEEETTGGGGHHHHHHTSCHH
T ss_pred             cCc--HHHHHHh-------hcCCCCEEEEEEccccCCCCcccCCCCcccC---CEEEEEeeEEcCHHHHHHHHHhhCCcc
Confidence            221  1122221       2356899999999999998888999999864   899999999999999999999887  3


Q ss_pred             cc---ccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhh-----------hheeEEecCCCCeEEEEEc
Q 006659          151 TF---ESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGA-----------YALIFKSQHYPNELIACKR  216 (636)
Q Consensus       151 ~~---~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~-----------~a~~~~d~~~~~~l~~~Rd  216 (636)
                      .|   .++||||+|+++|.....         ..++.+++++++++|+|.           |+|+++|   +++||++||
T Consensus       135 ~f~~~~~~TDSEvi~~l~~~~~~---------~~~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d---~~~l~a~Rd  202 (274)
T 3mdn_A          135 FYTYRKGSTDSEVLFLLALSEGL---------EHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSD---GQTLYAARY  202 (274)
T ss_dssp             HHTTCCSCCHHHHHHHHHHHTTT---------TTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEEC---SSCEEEEEE
T ss_pred             eecCCCCCChHHHHHHHHHHhhh---------cCCHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEc---CCEEEEEEC
Confidence            34   689999999999964321         147899999999999998           8888887   689999999


Q ss_pred             C----CceEEEecc--------Cccccccc--ceeeccCCCe
Q 006659          217 G----SPLLLGVKD--------GAVSILKF--DNAKGRNGGT  244 (636)
Q Consensus       217 ~----~pL~~G~~~--------~~~~~~~~--~~~~~~~g~~  244 (636)
                      +    +||++|...        +||.....  +...++||++
T Consensus       203 ~~~G~~Pll~~~~~~~~~~~~vASE~l~~~~~~~~~v~pGei  244 (274)
T 3mdn_A          203 SSDHIAPSVYYRYSHARQGWAVVSEPLETDEGDWTELRPGRM  244 (274)
T ss_dssp             ESSSCCCCCEEEEETTTTEEEEESSCC--CCSCCEECCSSEE
T ss_pred             CCCCCCCeEEEEEeCCCCEEEEEecccccCCceEEEECcCEE
Confidence            8    999888753        33331111  1227999999

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=99.95  E-value=1.8e-27  Score=263.66  Aligned_cols=172  Identities=19%  Similarity=0.267  Sum_probs=142.4

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||+|+++.+..  .......+..|+.+|+|||||++|+++.+                                     
T Consensus         1 CGI~G~~~~~~~--~~~~~~~~~~m~~~l~hRGpD~~G~~~~~-------------------------------------   41 (553)
T 1ct9_A            1 ASIFGVFDIKTD--AVELRKKALELSRLMRHRGPDWSGIYASD-------------------------------------   41 (553)
T ss_dssp             CEEEEEESCCSC--HHHHHHHHHHHHHTTGGGCBTEEEEEECS-------------------------------------
T ss_pred             CEEEEEEcCCCc--chhHHHHHHHHHHHHhccCCCcccEEEEC-------------------------------------
Confidence            999999965421  12345678899999999999999998762                                     


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI  161 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i  161 (636)
                                     .++|||+||+|.|. + .|+|||... +++++++|||+|||+.+||++|... +.|.+.||||+|
T Consensus        42 ---------------~~~lgh~Rlsi~~~-~-~~~QP~~~~-~~~~~lv~NGeIyN~~eLr~~L~~~-~~f~s~sDtEvi  102 (553)
T 1ct9_A           42 ---------------NAILAHERLSIVDV-N-AGAQPLYNQ-QKTHVLAVNGEIYNHQALRAEYGDR-YQFQTGSDCEVI  102 (553)
T ss_dssp             ---------------SEEEEEEECCCSCT-T-TCCSSEECT-TSCEEEEEEEEETTHHHHHHHHTTT-SCCCSCCTTHHH
T ss_pred             ---------------CEEEEEEeeeeeCC-C-CCCCCeEeC-CCCEEEEEEEEEECHHHHHHHHhcc-CccCCCCcHHHH
Confidence                           27999999999996 4 899999876 6789999999999999999999877 889999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec-c-----Cccccc
Q 006659          162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK-D-----GAVSIL  232 (636)
Q Consensus       162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~-~-----~~~~~~  232 (636)
                      +++|.    +||              .+++++|+|+|||++||.. .++|+++||+   +|||+|.. +     +|+..+
T Consensus       103 l~l~~----~~g--------------~~~l~~l~G~fa~~i~d~~-~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~a  163 (553)
T 1ct9_A          103 LALYQ----EKG--------------PEFLDDLQGMFAFALYDSE-KDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKA  163 (553)
T ss_dssp             HHHHH----HHT--------------TTTGGGCCEEEEEEEEETT-TTEEEEEECTTCCSCCEEEECTTCCEEEESSGGG
T ss_pred             HHHHH----HHH--------------HHHHHhCCccEEEEEEECC-CCEEEEEECCCCCCCeEEEEecCCEEEEeechHH
Confidence            99998    444              5689999999999999986 5899999999   99999984 3     455556


Q ss_pred             ccc----eeeccCCCeee-CCCc
Q 006659          233 KFD----NAKGRNGGTYA-RPAS  250 (636)
Q Consensus       233 ~~~----~~~~~~g~~~~-~~~~  250 (636)
                      +..    ...++||++.. .+|.
T Consensus       164 l~~~~~~i~~l~pG~~~~~~~g~  186 (553)
T 1ct9_A          164 LVPVCRTIKEFPAGSYLWSQDGE  186 (553)
T ss_dssp             TTTTCSEEEECCTTEEEETTTCS
T ss_pred             HHhhcCCEEEECCCeEEEEcCCc
Confidence            553    23899999943 3453

>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}

Probab=99.86  E-value=2.2e-21  Score=190.19  Aligned_cols=181  Identities=17%  Similarity=0.170  Sum_probs=142.8

Q ss_pred             ChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcC-----CCeEEEEeechhHHHHHHHHHHHHH
Q 006659          269 NYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRR-----SRRIVFIGCGTSYNAALAARPILEE  343 (636)
Q Consensus       269 ~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~-----~~~I~i~G~G~S~~aa~~~~~~~~~  343 (636)
                      +|++++..+..+....+.+.+...++.+    .+.++.++++++++.|.+     +++|+++|+|+|+.+|..+++.|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~i~~t----~~~ld~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~   83 (220)
T 3etn_A            8 HHHHHENLYFQGMIESIQELLQKEAQAV----LNIPVTDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCS   83 (220)
T ss_dssp             -----------CHHHHHHHHHHHHHHHH----HTCCCCTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHh
Confidence            5677777777777766666655544433    367788999999999988     9999999999999999999999998


Q ss_pred             hcCCcEEEeeccchhcc-cCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH--cCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659          344 LSDLPVTMEIASDLVDR-QAPIYREDTAVFVSQSGETADTLQALEYASE--NGALCVGITNTVGSAIARKTHCGVHINAG  420 (636)
Q Consensus       344 ~~~~~~~~~~~~e~~~~-~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~--~g~~vi~IT~~~~s~La~~ad~~l~~~~~  420 (636)
                      + +.++....+.++... ...++++|++|++|+||+|++++++++.||+  +|+++|+||++.+|||+++||++|.++.+
T Consensus        84 l-g~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~  162 (220)
T 3etn_A           84 T-GIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHP  162 (220)
T ss_dssp             T-TCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCC
T ss_pred             c-CCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCC
Confidence            5 678877777665433 3467899999999999999999999999999  99999999999999999999999999887


Q ss_pred             Ccc---cccchhhHHHHHHHHHHHHHHHhcCCCCcHH
Q 006659          421 AEI---GVASTKAYTSQIVVMAMLALAIGGDTISTQA  454 (636)
Q Consensus       421 ~e~---~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~  454 (636)
                      ++.   .+..+.|++++++++.+|+..++..++.+.+
T Consensus       163 ~e~~~~~~~~~~S~~~~l~lld~L~~~l~~~~g~~~~  199 (220)
T 3etn_A          163 AEVCTLGMTPTTSTTVMTVIGDILVVQTMKRTEFTIE  199 (220)
T ss_dssp             CCCSTTSCSSSHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            652   3456789999999999999998877665443

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=99.86  E-value=2.3e-21  Score=227.54  Aligned_cols=216  Identities=12%  Similarity=0.117  Sum_probs=160.8

Q ss_pred             hHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHHHHhhhhhccccccccc
Q 006659           18 YILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIH   97 (636)
Q Consensus        18 ~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~   97 (636)
                      +....++.++.+++||++++++|+..+.                ++.+||+.|.++++. .+|.++.      +..+.|+
T Consensus       143 ~~~r~ly~~r~~le~~~~~~~yI~S~s~----------------~~~vyKgmgl~~~v~-~~y~dL~------~~~~~g~  199 (1520)
T 1ofd_A          143 ELDRRLYIARSIIGKKLAEDFYVCSFSC----------------RTIVYKGMVRSIILG-EFYLDLK------NPGYTSN  199 (1520)
T ss_dssp             HHHHHHHHHHHHHGGGCBTTBEEEEEES----------------SEEEEEESSCHHHHH-HHBHHHH------CTTCCBS
T ss_pred             hHHHHHHHHHHHHHhhccCCEEEEEecC----------------cEEEEeCCccHHHHh-hhhhhcc------cccccee
Confidence            5667899999999999999999999974                799999999999865 4556543      1357899


Q ss_pred             eEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHH-----------------HHHhCC-CccccCCHhh
Q 006659           98 AGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKE-----------------TLIRHG-FTFESETDTE  159 (636)
Q Consensus        98 ~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~-----------------~l~~~g-~~~~~~tDsE  159 (636)
                      ++|||+||+|+|.+++.|+|||..       ++|||+|.|...+|+                 +|...+ ..+.+.||||
T Consensus       200 ~aigH~RySTnt~p~w~~AQPf~~-------LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe  272 (1520)
T 1ofd_A          200 FAVYHRRFSTNTMPKWPLAQPMRL-------LGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSY  272 (1520)
T ss_dssp             EEEEEECCCSSSCCCGGGSSCCSS-------EEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHH
T ss_pred             EEEEEccccCCCCCCcccCCchhe-------eEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHH
Confidence            999999999999999999999963       899999999988882                 233334 3478999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHH---------------------------HHHhhhhhheeEEecCCCCeEE
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEV---------------------------MRHLEGAYALIFKSQHYPNELI  212 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~l~G~~a~~~~d~~~~~~l~  212 (636)
                      ++.++++..... +       .++.+|+..+                           ++.++|+|++++.|   ++.++
T Consensus       273 ~ld~~lelL~~~-g-------~~l~~A~~~liPeaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~d---g~~l~  341 (1520)
T 1ofd_A          273 NLDSALELLVRT-G-------RSPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSD---GKIVG  341 (1520)
T ss_dssp             HHHHHHHHHHHT-T-------CCHHHHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEEC---SSEEE
T ss_pred             HHHHHHHHHHhc-C-------CCHHHHHHHhCcchhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEe---CCEEE
Confidence            999888754432 2       4666666444                           57889999999999   78999


Q ss_pred             EEEcC---CceEEEecc-----Ccccccccce--------eeccCCCe--eeC-CCcccceeeeeccchhhhhcCChHHH
Q 006659          213 ACKRG---SPLLLGVKD-----GAVSILKFDN--------AKGRNGGT--YAR-PASVQRALSILEMEVEQINKGNYEHY  273 (636)
Q Consensus       213 ~~Rd~---~pL~~G~~~-----~~~~~~~~~~--------~~~~~g~~--~~~-~~~~~~~i~~~~~~~~~~~~~~y~~~  273 (636)
                      ++||+   |||++|+..     .++|++.+|.        ..+.||++  ++. .|.+   +.--+.+.......||..|
T Consensus       342 a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id~~~g~i---~~~~eik~~~a~~~py~~w  418 (1520)
T 1ofd_A          342 AGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVDLAEQKI---LKNYQIKQQAAQKYPYGEW  418 (1520)
T ss_dssp             EEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTTCEEEEETTTTEE---ECHHHHHHHHHTTSCHHHH
T ss_pred             EEecCCCCCceEEEEeCCCEEEEEcccccccCcchheeeccCCCCCeEEEEECCCCeE---echHHHHHHHHhcCCHHHH
Confidence            99999   999999865     3455555552        28999999  322 2321   1122223233345566666


Q ss_pred             HHHH
Q 006659          274 MQKE  277 (636)
Q Consensus       274 m~ke  277 (636)
                      +.+.
T Consensus       419 l~~~  422 (1520)
T 1ofd_A          419 IKIQ  422 (1520)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            5443

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=99.86  E-value=1.3e-21  Score=229.05  Aligned_cols=213  Identities=16%  Similarity=0.161  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHhccccCCC----CcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHHHHhhhhhccccc
Q 006659           18 YILQVLFNGLRRLEYRGYD----SAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEES   93 (636)
Q Consensus        18 ~~~~~l~~~l~~l~~RG~d----~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~   93 (636)
                      +....++.++.+++||+++    +++|+..+.                ++.+||+.|.++++. .+|.++.      +..
T Consensus       143 ~~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~----------------~~~vyKGmgl~~~v~-~~y~dL~------d~~  199 (1479)
T 1ea0_A          143 QFELDLYIIRRRIEKAVKGEQINDFYICSLSA----------------RSIIYKGMFLAEQLT-TFYPDLL------DER  199 (1479)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSCEEEEEES----------------SEEECCBSSCGGGHH-HHCGGGG------STT
T ss_pred             hHHHHHHHHHHHHHHhhhhccCCcEEEEEecC----------------cEEEEecCcCHHHhh-hhhhhhc------ccc
Confidence            5677899999999999974    789999864                799999999999765 4444432      245


Q ss_pred             cccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHh----------------CC-CccccCC
Q 006659           94 FSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIR----------------HG-FTFESET  156 (636)
Q Consensus        94 ~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~----------------~g-~~~~~~t  156 (636)
                      +.|.++|||+||+|+|.+++.|+|||..       ++|||+|.|...+|+.+..                .+ ..+.+.|
T Consensus       200 ~~g~~aigH~RySTnt~p~w~~AQPf~~-------laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~S  272 (1479)
T 1ea0_A          200 FESDFAIYHQRYSTNTFPTWPLAQPFRM-------LAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLS  272 (1479)
T ss_dssp             CCBSEEEEEECCCSCSCCCSTTSSCCSS-------EEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCC
T ss_pred             cceeEEEeeecccCCCCCCcccCCccEE-------EEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCC
Confidence            7899999999999999999999999963       8999999999999988641                12 2267899


Q ss_pred             HhhHHHHHHHHHHhhccccCCCCCCCHHHHHH-------------------------HHHHHhhhhhheeEEecCCCCeE
Q 006659          157 DTEVIPKLAKFVFDKANEEEGDQPVTFSQVVV-------------------------EVMRHLEGAYALIFKSQHYPNEL  211 (636)
Q Consensus       157 DsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~l~G~~a~~~~d~~~~~~l  211 (636)
                      |||++.++++.... .+       .++.+|+.                         .+++.++|+|++++.|   ++.|
T Consensus       273 DSevld~~lelL~~-~g-------~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~d---g~~l  341 (1479)
T 1ea0_A          273 DSGSLDTVFEVMVR-AG-------RTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTD---GRWV  341 (1479)
T ss_dssp             HHHHHHHHHHHHHH-TT-------CCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECS---SSEE
T ss_pred             cHHHHHHHHHHHHH-cC-------CCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEe---CCEE
Confidence            99999888875432 22       45666655                         4467889999999988   7899


Q ss_pred             EEEEcC---CceEEEecc-----Ccccccccce--------eeccCCCe--eeC-CCcccceeeeeccchhhhhcCChHH
Q 006659          212 IACKRG---SPLLLGVKD-----GAVSILKFDN--------AKGRNGGT--YAR-PASVQRALSILEMEVEQINKGNYEH  272 (636)
Q Consensus       212 ~~~Rd~---~pL~~G~~~-----~~~~~~~~~~--------~~~~~g~~--~~~-~~~~~~~i~~~~~~~~~~~~~~y~~  272 (636)
                      +++||+   |||++|+..     .++|++.++.        ..+.||++  ++. .|.+   +.--+.+.......||..
T Consensus       342 ~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~id~~~g~i---~~~~eik~~~~~~~py~~  418 (1479)
T 1ea0_A          342 VGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVDLQSGKL---YRDRELKDHLATLKPWDK  418 (1479)
T ss_dssp             EEECCTTCCSCCEEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEEEEETTTTEE---ECHHHHHHHHHHTTTHHH
T ss_pred             EEEecCCCCcceEEEEECCCEEEEEcccccccCcchheeeccCCCCCeEEEEECCCCeE---eccHHHHHHHHhhCCchh
Confidence            999999   999999764     3455555552        28999999  332 3431   112222223334556766


Q ss_pred             HH
Q 006659          273 YM  274 (636)
Q Consensus       273 ~m  274 (636)
                      |+
T Consensus       419 wl  420 (1479)
T 1ea0_A          419 WV  420 (1479)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}

Probab=99.82  E-value=2.1e-19  Score=171.72  Aligned_cols=144  Identities=21%  Similarity=0.159  Sum_probs=124.5

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEee--ccchhcccCCCCCCcEEEEEcCCCCC
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEI--ASDLVDRQAPIYREDTAVFVSQSGET  379 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~dlvI~iS~SG~t  379 (636)
                      +.++.+.++++++.|.++++|+++|+|+|+.+|..+++.+.++ +.++....  +.++......++++|++|++|+||+|
T Consensus        22 ~~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t  100 (187)
T 3sho_A           22 NQTQPEAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSL-GIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYL  100 (187)
T ss_dssp             HTCCHHHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHT-TCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCC
T ss_pred             HhCCHHHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHhc-CCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCC
Confidence            3456788999999999999999999999999999999999884 77777665  44554445567899999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCC
Q 006659          380 ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDT  449 (636)
Q Consensus       380 ~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~  449 (636)
                      ++++++++.||++|+++|+||++.+|||+++||++|.++.+...   .+.|.+++++++.+|...+....
T Consensus       101 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~---~~~S~~~~~~l~d~L~~~~~~~~  167 (187)
T 3sho_A          101 RDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVG---HSLSPVGLIAVVNLLLAEIAVRE  167 (187)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCCSS---SSCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCCCc---ccccHhHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999876543   35677888999999888887654

>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}

Probab=99.82  E-value=9.9e-20  Score=176.13  Aligned_cols=153  Identities=20%  Similarity=0.271  Sum_probs=131.4

Q ss_pred             ccccccchHHHHHHHcCCC-eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcc-cCCCCCCcEEEEEcCCCCC
Q 006659          302 KSVLLGGLKDHLKTIRRSR-RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDR-QAPIYREDTAVFVSQSGET  379 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~-~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~-~~~~~~~dlvI~iS~SG~t  379 (636)
                      +.++.++++++++.|.+++ +|+++|+|+|+.+|..+++.|.++ ++++....+.++.+. ...++++|++|++|+||+|
T Consensus        27 ~~l~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t  105 (201)
T 3fxa_A           27 EVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCI-ERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNT  105 (201)
T ss_dssp             HHSCHHHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHT-TCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCC
T ss_pred             HhcCHHHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhc-CCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCC
Confidence            4566788999999999995 999999999999999999999985 788888777665433 3457899999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc---cccchhhHHHHHHHHHHHHHHHhcCCCCcHHH
Q 006659          380 ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI---GVASTKAYTSQIVVMAMLALAIGGDTISTQAR  455 (636)
Q Consensus       380 ~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~---~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~  455 (636)
                      ++++++++.||++|+++|+||++.+|||+++||++|.++.+.|.   ....+.+.+++++++.+|...+...++.+.++
T Consensus       106 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~e~~~~~~~~~~s~~~~l~~~d~L~~~l~~~~g~~~~~  184 (201)
T 3fxa_A          106 GELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQ  184 (201)
T ss_dssp             HHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSCCCSTTSCSCHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCCccccccCCCchHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999999999999999999999999999999999999887653   22457888999999999999988777655443

>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}

Probab=99.81  E-value=2.7e-19  Score=170.38  Aligned_cols=144  Identities=17%  Similarity=0.208  Sum_probs=122.2

Q ss_pred             ccccccchHHHHHHHcCCC-eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc-ccCCCCCCcEEEEEcCCCCC
Q 006659          302 KSVLLGGLKDHLKTIRRSR-RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD-RQAPIYREDTAVFVSQSGET  379 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~-~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t  379 (636)
                      +.++. +++++++.|.+++ +|+++|+|+|+.+|..+++.+.++ +.++....+.+... ....++++|++|++|+||+|
T Consensus        32 ~~~~~-~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t  109 (183)
T 2xhz_A           32 QYINQ-NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFAST-GTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES  109 (183)
T ss_dssp             GTSSH-HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTT-TCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCC
T ss_pred             HHHHH-HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhc-CceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCC
Confidence            34555 7899999999987 999999999999999999988875 67776666555433 23457899999999999999


Q ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc---cccchhhHHHHHHHHHHHHHHHhc
Q 006659          380 ADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI---GVASTKAYTSQIVVMAMLALAIGG  447 (636)
Q Consensus       380 ~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~---~~~~t~s~~~~~~~l~lL~~~~~~  447 (636)
                      ++++++++.||++|+++|+||++.+|||+++||++|.++.+.|.   ....+.+++++++++.+|...+..
T Consensus       110 ~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~S~~~~~~~~d~L~~~~~~  180 (183)
T 2xhz_A          110 SEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLK  180 (183)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCCSCCSSTTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCCCccccccCCCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999886653   345778899999998888877654

>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3

Probab=99.77  E-value=4.2e-18  Score=161.64  Aligned_cols=145  Identities=12%  Similarity=0.143  Sum_probs=121.4

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e  381 (636)
                      +.++.+.++++++.|.++++|+++|+|+|+.+|..+++.+.++ +.++......    ....++++|++|++|+||+|++
T Consensus        23 ~~l~~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~----~~~~~~~~d~vi~iS~sG~t~~   97 (180)
T 1jeo_A           23 NDEWKNKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHL-GFKSYFVGET----TTPSYEKDDLLILISGSGRTES   97 (180)
T ss_dssp             CHHHHHHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHT-TCCEEETTST----TCCCCCTTCEEEEEESSSCCHH
T ss_pred             HhCCHHHHHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHc-CCeEEEeCCC----ccccCCCCCEEEEEeCCCCcHH
Confidence            4566788999999999999999999999999999999999885 6676665432    1345789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHH--HHHHHHHHHHHHHhcCCCCcH
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYT--SQIVVMAMLALAIGGDTISTQ  453 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~--~~~~~l~lL~~~~~~~~~~~~  453 (636)
                      ++++++.||++|+++|+||++.+| |++.||++|.++. ++..+.++.+++  ++++++.+|...+....+...
T Consensus        98 ~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~~-~~~~~~~~~s~~~~~~~~~ld~L~~~~~~~~~~~~  169 (180)
T 1jeo_A           98 VLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEV-KKSKYLPMGTTFEETALIFLDLVIAEIMKRLNLDE  169 (180)
T ss_dssp             HHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECCC-CCBTTBCTTHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeCC-cccccccchhHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            999999999999999999999999 9999999999987 444455566664  567888888888877655433

>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3

Probab=99.77  E-value=1.9e-18  Score=166.83  Aligned_cols=144  Identities=22%  Similarity=0.185  Sum_probs=115.1

Q ss_pred             cccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHH
Q 006659          303 SVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADT  382 (636)
Q Consensus       303 ~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~  382 (636)
                      .++.++++++++.|.++++|+++|+|+|+.+|..+++.+.++ +.++.....  .  ....++++|++|++|+||+|+++
T Consensus        31 ~l~~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~--~--~~~~~~~~DvvI~iS~SG~t~~~  105 (200)
T 1vim_A           31 HIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHL-GYTVYVVGE--T--VTPRITDQDVLVGISGSGETTSV  105 (200)
T ss_dssp             HCCHHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHT-TCCEEETTS--T--TCCCCCTTCEEEEECSSSCCHHH
T ss_pred             hcCHHHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhc-CCeEEEeCC--c--cccCCCCCCEEEEEeCCCCcHHH
Confidence            455678899999999999999999999999999999988775 566655432  2  13457899999999999999999


Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc-------cchhhH--HHHHHHHHHHHHHHhcCCCC
Q 006659          383 LQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV-------ASTKAY--TSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       383 i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~-------~~t~s~--~~~~~~l~lL~~~~~~~~~~  451 (636)
                      +++++.||++|+++|+||++.+|||+++||++|.++.+.+...       .++.+.  ++.++++.+|...+....+.
T Consensus       106 i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lld~L~~~~~~~~~~  183 (200)
T 1vim_A          106 VNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHL  183 (200)
T ss_dssp             HHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECCcccccCCcccccccccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999988765421       123333  34466777777776654443

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A

Probab=99.76  E-value=3.6e-18  Score=163.00  Aligned_cols=144  Identities=14%  Similarity=0.102  Sum_probs=118.6

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e  381 (636)
                      +.++.++++++++.|.++++|+++|+|+|+.+|..+++.+.++ +.++.......    ...++++|++|++|+||+|++
T Consensus        20 ~~l~~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~~----~~~~~~~d~vI~iS~sG~t~~   94 (186)
T 1m3s_A           20 AYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHM-GFNAHIVGEIL----TPPLAEGDLVIIGSGSGETKS   94 (186)
T ss_dssp             TTCCHHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHT-TCCEEETTSTT----CCCCCTTCEEEEECSSSCCHH
T ss_pred             HhcCHHHHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhc-CCeEEEeCccc----ccCCCCCCEEEEEcCCCCcHH
Confidence            3456678999999999999999999999999999999999885 56666654321    345789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCccc-------ccchhhH--HHHHHHHHHHHHHHhcCCC
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIG-------VASTKAY--TSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~-------~~~t~s~--~~~~~~l~lL~~~~~~~~~  450 (636)
                      ++++++.||++|+++|+||++.+|||++.||++|.++.+.+..       ...+.+.  +++++++.+|...+....+
T Consensus        95 ~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~L~~~~~~~~~  172 (186)
T 1m3s_A           95 LIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKG  172 (186)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999998866541       2234444  3567888888887765543

>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3

Probab=99.74  E-value=1.3e-17  Score=171.44  Aligned_cols=163  Identities=23%  Similarity=0.265  Sum_probs=125.8

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHH-HHHHHHHHHhcCC-c-E
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAA-LAARPILEELSDL-P-V  349 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa-~~~~~~~~~~~~~-~-~  349 (636)
                      .+.++..+++..+.+++..            ++ +.++++++.|.++++|+++|+|+|+.+| ..+.+++.+++.. . +
T Consensus        38 ~i~~e~~~~~~ai~~t~~~------------i~-~~i~~i~~~l~~a~rI~~~G~G~S~~lA~~~a~~~~~~~g~~~~~~  104 (306)
T 1nri_A           38 LMNEEDKLVPLAIESCLPQ------------IS-LAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMV  104 (306)
T ss_dssp             HHHHHHTHHHHHHHHHHHH------------HH-HHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSE
T ss_pred             HHHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHHHHcCCEEEEEeccHhHHHHHHHHHhcccccCCCHHHH
Confidence            4555556677777776532            22 5678999999999999999999999999 4577777776421 1 1


Q ss_pred             -EEee------------ccchh------cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc
Q 006659          350 -TMEI------------ASDLV------DRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK  410 (636)
Q Consensus       350 -~~~~------------~~e~~------~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~  410 (636)
                       ....            ..+..      .....++++|++|+||+||+|++++++++.||++|+++|+||++++|||+++
T Consensus       105 ~~l~~~g~~a~~~a~e~~ed~~~~~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~  184 (306)
T 1nri_A          105 KGIIAGGECAIRHPVEGAEDNTKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEI  184 (306)
T ss_dssp             EEEETTCTHHHHSCCTTGGGCTTHHHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHH
T ss_pred             HHHHhcchHHHhhhhhcccCcHHHHHHHHHhcCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHh
Confidence             0110            01111      1123578999999999999999999999999999999999999999999999


Q ss_pred             cCeeEEcCCCCccccc--chhhHHHHHHHHHHHHHHHhcC
Q 006659          411 THCGVHINAGAEIGVA--STKAYTSQIVVMAMLALAIGGD  448 (636)
Q Consensus       411 ad~~l~~~~~~e~~~~--~t~s~~~~~~~l~lL~~~~~~~  448 (636)
                      ||++|.++.++|....  .+++++++++++.+|...+...
T Consensus       185 AD~~I~~~~g~E~~~~st~~~s~ta~~~vl~~L~~~~~~~  224 (306)
T 1nri_A          185 ADIAIETIVGPEILTGSSRLKSGTAQKMVLNMLTTASMIL  224 (306)
T ss_dssp             SSEEEECCCCSCSSTTCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCccccCcccchhHHHHHHHHHHHHHHHHHH
Confidence            9999999888876443  3689999999999988887654

>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A

Probab=99.73  E-value=3.8e-17  Score=159.24  Aligned_cols=141  Identities=16%  Similarity=0.217  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHH----HHcCCCeEEEEeechhHHHHHHHHH------H
Q 006659          271 EHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLK----TIRRSRRIVFIGCGTSYNAALAARP------I  340 (636)
Q Consensus       271 ~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~----~l~~~~~I~i~G~G~S~~aa~~~~~------~  340 (636)
                      .++|.+++.++++.+++++....+           .+.++++++    .+.++++|+++|+|+|+.+|..++.      .
T Consensus        23 ~~~~~~~i~~~~~~l~~~~~~~~~-----------~~~i~~~~~~i~~~l~~~~~I~i~G~G~S~~~A~~~a~~l~~~~~   91 (212)
T 2i2w_A           23 QDLIRNELNEAAETLANFLKDDAN-----------IHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYR   91 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence            568999999999999998753111           233445544    4789999999999999999987762      2


Q ss_pred             HHHhcCCcEEEee-ccch-------h------cc-cCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Q 006659          341 LEELSDLPVTMEI-ASDL-------V------DR-QAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGS  405 (636)
Q Consensus       341 ~~~~~~~~~~~~~-~~e~-------~------~~-~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s  405 (636)
                      +.+ .++++.... +..+       .      .. ...++++|++|++|+||+|++++++++.||++|+++|+||++.+|
T Consensus        92 ~~~-~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s  170 (212)
T 2i2w_A           92 ENR-PGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGG  170 (212)
T ss_dssp             TTS-SSCSEEECCCTTCGGGGSCCCSCSSHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCG
T ss_pred             ccC-CCCeEEecCChHHhhHhhccCCHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence            222 356666654 3221       1      00 123689999999999999999999999999999999999999999


Q ss_pred             ccccccCeeEEcCCCCcc
Q 006659          406 AIARKTHCGVHINAGAEI  423 (636)
Q Consensus       406 ~La~~ad~~l~~~~~~e~  423 (636)
                      ||+++||++|.++.|++.
T Consensus       171 ~La~~aD~~l~~~~g~e~  188 (212)
T 2i2w_A          171 KMAGTADIEIRVPHFGYA  188 (212)
T ss_dssp             GGTTCSSEEEEECCCSCH
T ss_pred             chHHhCCEEEEcCCCCch
Confidence            999999999999886553

>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}

Probab=99.71  E-value=2e-16  Score=152.09  Aligned_cols=135  Identities=18%  Similarity=0.191  Sum_probs=107.4

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHH-----hcCCcEEEeecc---------chhcc-------cCCCC
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEE-----LSDLPVTMEIAS---------DLVDR-------QAPIY  365 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~-----~~~~~~~~~~~~---------e~~~~-------~~~~~  365 (636)
                      +.++++++.+.++++|+++|+|+|+.+|..+.+.+..     ..++++....+.         +..+.       ...++
T Consensus        29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~  108 (196)
T 2yva_A           29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH  108 (196)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence            6788999999999999999999999999999987772     246776665421         22111       13468


Q ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcCCCCcccccchhhHHHHHHHHHHHH
Q 006659          366 REDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK---THCGVHINAGAEIGVASTKAYTSQIVVMAMLA  442 (636)
Q Consensus       366 ~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~---ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~  442 (636)
                      ++|++|++|+||+|++++++++.||++|+++|+||++.+|||+++   ||++|.++....     .....++++++.+|.
T Consensus       109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~-----~~~~~~~l~~~~~L~  183 (196)
T 2yva_A          109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRS-----ARIQEMHMLTVNCLC  183 (196)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCH-----HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCCh-----hHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999   999999876321     112337777777776


Q ss_pred             HHHh
Q 006659          443 LAIG  446 (636)
Q Consensus       443 ~~~~  446 (636)
                      ..+.
T Consensus       184 ~~~~  187 (196)
T 2yva_A          184 DLID  187 (196)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A

Probab=99.70  E-value=1.4e-16  Score=153.71  Aligned_cols=131  Identities=20%  Similarity=0.224  Sum_probs=104.4

Q ss_pred             HHHHHHHcCCCeEEEEeechhHHHHHHHHHHH------HHhcCCcEEEeecc---------chhcc-------cCCCCCC
Q 006659          310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPIL------EELSDLPVTMEIAS---------DLVDR-------QAPIYRE  367 (636)
Q Consensus       310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~------~~~~~~~~~~~~~~---------e~~~~-------~~~~~~~  367 (636)
                      +.+++.+.++++|+++|+|+|+.+|..+++.+      .+ .++++....+.         +..+.       ...++++
T Consensus        36 ~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  114 (199)
T 1x92_A           36 LVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERER-PSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPG  114 (199)
T ss_dssp             HHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCC-CCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTT
T ss_pred             HHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCC-CCCceEecCCChhHHHHhhcCccHHHHHHHHHHhCCCCC
Confidence            44447888999999999999999999998888      33 46676665432         22111       1346899


Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcCCCCcccccchhhHHHHHHHHHHHHHH
Q 006659          368 DTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK---THCGVHINAGAEIGVASTKAYTSQIVVMAMLALA  444 (636)
Q Consensus       368 dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~---ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~  444 (636)
                      |++|++|+||+|++++++++.||++|+++|+||++.+|||+++   ||++|.++.+.+..     .++++++++.+|...
T Consensus       115 DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~~~~-----~~~~~l~i~~~L~~~  189 (199)
T 1x92_A          115 DVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITAR-----IQEVHLLAIHCLCDL  189 (199)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSCHHH-----HHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCchHH-----HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999   99999998754421     266777777777766


Q ss_pred             Hh
Q 006659          445 IG  446 (636)
Q Consensus       445 ~~  446 (636)
                      +.
T Consensus       190 ~~  191 (199)
T 1x92_A          190 ID  191 (199)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A

Probab=99.68  E-value=4.7e-16  Score=149.72  Aligned_cols=158  Identities=19%  Similarity=0.245  Sum_probs=116.4

Q ss_pred             HHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHH----cCCCeEEEEeechhHHHHHHHHHHHH-H--h
Q 006659          272 HYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTI----RRSRRIVFIGCGTSYNAALAARPILE-E--L  344 (636)
Q Consensus       272 ~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l----~~~~~I~i~G~G~S~~aa~~~~~~~~-~--~  344 (636)
                      +++.+.+.++++.+.++...           .++.+.++++++.+    .++++|+++|+|+|+.+|..++..+. +  +
T Consensus         8 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~~i~~~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~   76 (198)
T 2xbl_A            8 TYITNSIAEAQRVMAAMLAD-----------ERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAF   76 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhcc
Confidence            46777788888888887640           12234556666554    78999999999999999988864332 1  1


Q ss_pred             --cCCcEEEee--cc-------chhc-------ccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCc
Q 006659          345 --SDLPVTMEI--AS-------DLVD-------RQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSA  406 (636)
Q Consensus       345 --~~~~~~~~~--~~-------e~~~-------~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~  406 (636)
                        .++++....  +.       ++.+       ....++++|++|++|+||+|++++++++.||++|+++|+||++.+||
T Consensus        77 ~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~  156 (198)
T 2xbl_A           77 DRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGE  156 (198)
T ss_dssp             CCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCT
T ss_pred             CCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence              245666553  11       1111       11236899999999999999999999999999999999999999999


Q ss_pred             cccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHH
Q 006659          407 IARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAI  445 (636)
Q Consensus       407 La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~  445 (636)
                      |+++||++|.++.+.+.     ..+.+++.++.+|...+
T Consensus       157 L~~~ad~~l~~~~~~~~-----~~~~~~l~i~~~L~~~~  190 (198)
T 2xbl_A          157 MRELCDLLLEVPSADTP-----KIQEGHLVLGHIVCGLV  190 (198)
T ss_dssp             HHHHCSEEEECSCSSHH-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEeCCCcHH-----HHHHHHHHHHHHHHHHH
Confidence            99999999999875532     24666777776666554

>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}

Probab=99.61  E-value=8.5e-16  Score=152.96  Aligned_cols=138  Identities=12%  Similarity=0.085  Sum_probs=99.4

Q ss_pred             cchHHHHH----HHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeecc-------------c-------hhcccC
Q 006659          307 GGLKDHLK----TIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIAS-------------D-------LVDRQA  362 (636)
Q Consensus       307 ~~l~~~~~----~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~-------------e-------~~~~~~  362 (636)
                      +.++++++    .+.++++|+++|+|+|+.+|..+.+.+.++....... .+.             +       ......
T Consensus        26 ~~i~~a~~~l~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~l~~~~~~~-~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~  104 (243)
T 3cvj_A           26 QAIIKGAHLVSEAVMNGGRFYVFGSGHSHMIAEEIYNRAGGLALVTAIL-PPELMLHERPNKSTYLERIEGLSKSYLKLH  104 (243)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEESGGGHHHHHHTSSSTTCBTTEEECC-CGGGSSSSSTTHHHHHTTCTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhccccccCccc-chhhhccCCchhhhhhhhcccHHHHHHHHh
Confidence            34555544    4567899999999999988877766544432212111 111             0       011234


Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCC-----------ccccccCeeEEcCCCC-cc-------
Q 006659          363 PIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGS-----------AIARKTHCGVHINAGA-EI-------  423 (636)
Q Consensus       363 ~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s-----------~La~~ad~~l~~~~~~-e~-------  423 (636)
                      .++++|++|++|+||+|++++++++.||++|++||+||++.+|           ||+++||++|.++.+. |.       
T Consensus       105 ~~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~~~~~~~e~~~~~~~~  184 (243)
T 3cvj_A          105 QVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDNGAPVGDAGFQIANS  184 (243)
T ss_dssp             TCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEECCCCTTSCCEECSSS
T ss_pred             cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEECCCCcccceeeccCc
Confidence            4789999999999999999999999999999999999999777           9999999999987754 32       


Q ss_pred             --cccchhhHHHHHHHHHHHHHHHh
Q 006659          424 --GVASTKAYTSQIVVMAMLALAIG  446 (636)
Q Consensus       424 --~~~~t~s~~~~~~~l~lL~~~~~  446 (636)
                        ....+.+ +++++++.+|...+.
T Consensus       185 ~~~~~~~s~-~~~~~il~~L~~~~~  208 (243)
T 3cvj_A          185 EIYSGATSD-SIGCFLAQALIVETL  208 (243)
T ss_dssp             SCEECCCHH-HHHHHHHHHHHHHHH
T ss_pred             cccCCcHHH-HHHHHHHHHHHHHHH
Confidence              2233443 777777777766554

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3

Probab=99.61  E-value=4.8e-15  Score=141.40  Aligned_cols=115  Identities=21%  Similarity=0.273  Sum_probs=89.7

Q ss_pred             cchHHHHH----HHcCCCeEEEEeechhHHHHHHHHHHHHH---h--cCCcEEEee--ccch-------------h-ccc
Q 006659          307 GGLKDHLK----TIRRSRRIVFIGCGTSYNAALAARPILEE---L--SDLPVTMEI--ASDL-------------V-DRQ  361 (636)
Q Consensus       307 ~~l~~~~~----~l~~~~~I~i~G~G~S~~aa~~~~~~~~~---~--~~~~~~~~~--~~e~-------------~-~~~  361 (636)
                      ++++++++    .+.++++|+++|+|+|+.+|..++..+..   +  .++++....  +..+             . ...
T Consensus        26 ~~i~~~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  105 (188)
T 1tk9_A           26 GQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVE  105 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHH
Confidence            44556655    66779999999999999999888753311   1  245665553  2110             0 012


Q ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCC
Q 006659          362 APIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGA  421 (636)
Q Consensus       362 ~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~  421 (636)
                      ..++++|++|++|+||+|++++++++.||++|+++|+||++++|||+++||++|.++.+.
T Consensus       106 ~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~~  165 (188)
T 1tk9_A          106 ALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD  165 (188)
T ss_dssp             HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCSC
T ss_pred             HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCCC
Confidence            236899999999999999999999999999999999999999999999999999998754

>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}

Probab=99.60  E-value=1.2e-14  Score=139.96  Aligned_cols=135  Identities=16%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             chHHHHHH----HcCCCeEEEEeechhHHHHHHHHHHHHH-----hcCCcEEEeeccc---------hhc------c-cC
Q 006659          308 GLKDHLKT----IRRSRRIVFIGCGTSYNAALAARPILEE-----LSDLPVTMEIASD---------LVD------R-QA  362 (636)
Q Consensus       308 ~l~~~~~~----l~~~~~I~i~G~G~S~~aa~~~~~~~~~-----~~~~~~~~~~~~e---------~~~------~-~~  362 (636)
                      +++++++.    ++++++|+++|+|+|...|..+++.|..     -.++++....+..         +.+      . ..
T Consensus        31 ~i~~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~  110 (201)
T 3trj_A           31 AIAQAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAA  110 (201)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHh
Confidence            45566655    5667999999999999999988887762     1366666643211         100      0 11


Q ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCcccccc---CeeEEcCCCCcccccchhhHHHHHHHHH
Q 006659          363 PIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKT---HCGVHINAGAEIGVASTKAYTSQIVVMA  439 (636)
Q Consensus       363 ~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~a---d~~l~~~~~~e~~~~~t~s~~~~~~~l~  439 (636)
                      .++++|++|++|+||+|++++++++.||++|+++|+||++++|||+++|   |++|.++....     .....+++.++.
T Consensus       111 ~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~~~-----~~~~~~~l~i~~  185 (201)
T 3trj_A          111 LGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDNI-----ANIQENHFLIVH  185 (201)
T ss_dssp             HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCCCH-----HHHHHHHHHHHH
T ss_pred             hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCCCc-----hHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999   99999876432     122445666666


Q ss_pred             HHHHHHhc
Q 006659          440 MLALAIGG  447 (636)
Q Consensus       440 lL~~~~~~  447 (636)
                      +|...+.+
T Consensus       186 ~l~~~v~~  193 (201)
T 3trj_A          186 CLCDIIDQ  193 (201)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            66655543

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=99.60  E-value=1.7e-16  Score=173.81  Aligned_cols=105  Identities=12%  Similarity=0.147  Sum_probs=91.7

Q ss_pred             cccc-ceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH---HHHHHHHhCCCccccCCHhhHHHHHHHHH
Q 006659           93 SFSI-HAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE---VLKETLIRHGFTFESETDTEVIPKLAKFV  168 (636)
Q Consensus        93 ~~~~-~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~---~l~~~l~~~g~~~~~~tDsE~i~~l~~~~  168 (636)
                      .+.| .++|||+||+|.+   ..|+||+... .++++++  |+|||+.   +||++|.  | .|.+.||||+|+++|.  
T Consensus        22 ~~~g~~~~igh~R~~t~~---~~~~QP~~~~-~~~~~l~--GeI~N~~~~~eLr~~l~--g-~f~s~sDtEvil~l~~--   90 (503)
T 1q15_A           22 DFDGKGEALSNGYLFIEQ---NGHYQKCEME-RGTAYLI--GSLYNRTFLIGLAGVWE--G-EAYLANDAELLALLFT--   90 (503)
T ss_dssp             TSCEEEEEETTEEEEEET---TCCEEEEECS-SSEEEEE--ECCSCHHHHHHHHTTTC--G-GGGGCCHHHHHHHHHH--
T ss_pred             hccCCceeEeeeeEEEcC---CCCCCCcCcC-CCeEEEE--EEEeCCCChHHHHHHhh--C-CCCCCChHHHHHHHHH--
Confidence            4567 9999999999985   3789999876 6678888  9999999   9999986  5 7899999999999998  


Q ss_pred             HhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          169 FDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                        +||              .+++++|+|+|||++||.. .+ |+++||+   +|||+|..+
T Consensus        91 --~~g--------------~~~l~~l~G~fa~~i~d~~-~~-l~~aRD~~G~rPL~y~~~~  133 (503)
T 1q15_A           91 --RLG--------------ANALALAEGDFCFFIDEPN-GE-LTVITESRGFSPVHVVQGK  133 (503)
T ss_dssp             --HHC--------------GGGGGGCCSSEEEEEECTT-SC-EEEEECSSSSSCCEEEESS
T ss_pred             --HHH--------------HHHHHHcCEEEEEEEEeCC-CC-EEEEECCCCCeeEEEEEeC
Confidence              455              5799999999999999976 46 9999996   999999765

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=99.56  E-value=9.2e-16  Score=168.30  Aligned_cols=101  Identities=19%  Similarity=0.256  Sum_probs=83.6

Q ss_pred             eeecCCCCC---CCCCCCCCcccC---CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhcccc
Q 006659          102 HTRWATHGE---PAPRNSHPQTSG---AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEE  175 (636)
Q Consensus       102 H~R~aT~g~---~~~~n~qPf~~~---~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~  175 (636)
                      |.|++|.|.   .+..-+||+...   ..++++++|||+|||+.+||++|.   +.|.+.||||+|+++|.    +||  
T Consensus        40 ~~r~p~~~~~~~~~~~~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~---~~f~t~sDtEvil~l~~----~~g--  110 (513)
T 1jgt_A           40 PQGERSLAATLVHAPSVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLP---AGPAPEGDAELVLRLLE----RYD--  110 (513)
T ss_dssp             TTGGGSCEEEEEECTTSCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSC---SSCCCSSHHHHHHHHHH----HHG--
T ss_pred             ccCCCccccceeeCCccCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhC---CCCCCCCHHHHHHHHHH----HHh--
Confidence            677777654   222346888765   136899999999999999999992   78999999999999998    455  


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          176 EGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                                  .+++++|+|+|||++||.   ++|+++||+   +|||+|..+
T Consensus       111 ------------~~~~~~l~G~fA~~i~d~---~~l~~aRD~~G~kPLyy~~~~  149 (513)
T 1jgt_A          111 ------------LHAFRLVNGRFATVVRTG---DRVLLATDHAGSVPLYTCVAP  149 (513)
T ss_dssp             ------------GGGGGTCCEEEEEEEEET---TEEEEEECTTCCSCCEEEEET
T ss_pred             ------------HHhHhhcCeeEEEEEEEC---CEEEEEECCCCCceeEEEEeC
Confidence                        579999999999999995   459999997   899999876

>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1

Probab=99.46  E-value=7.9e-13  Score=133.13  Aligned_cols=216  Identities=13%  Similarity=0.047  Sum_probs=144.0

Q ss_pred             cCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCe----eEEcCCCCcccccchhhHHHHHH
Q 006659          361 QAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHC----GVHINAGAEIGVASTKAYTSQIV  436 (636)
Q Consensus       361 ~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~----~l~~~~~~e~~~~~t~s~~~~~~  436 (636)
                      +.+.++.|+||++|          +++.|.++|+++|+||+  +.+|.+.|.-    ++.++.+.     .+......+ 
T Consensus        57 P~wvg~~dlvia~S----------a~~~A~rrGa~vv~vts--gG~L~~~a~~~~~~~v~vp~~~-----~pR~al~~l-  118 (290)
T 1wiw_A           57 PDWGEEGTLFLLEG----------GYDLGEAAGMALLAETG--RARVVRVGFRPGVEVHIPPSPL-----APYRYLRFL-  118 (290)
T ss_dssp             CSCCSSSEEEEEEC----------SSCTTSCSTTC--CCCT--TCEEEEEESSTTCSEECCCCTT-----HHHHHHHHH-
T ss_pred             CCccCCCCEEEEec----------HHHHHHHcCCeEEEECC--CChHHHHHhhCCCCEEeCCCCC-----CCHHHHHHH-
Confidence            35678999999999          78899999999999998  5599988652    33333211     122222222 


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHh
Q 006659          437 VMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEV  515 (636)
Q Consensus       437 ~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~  515 (636)
                        .++     ..   ...+.++..+.+.+..+......+. .+.++.+|.++.+...+++ ++ ...++|+.++..|.|+
T Consensus       119 --~~l-----~~---~~~~l~~~a~~l~~~a~~~~p~~~~~~NpAK~LA~~L~~~~Pvi~-~~-~~~~~A~R~k~~l~en  186 (290)
T 1wiw_A          119 --LLA-----TG---REEVLRSVDEALLEERRRLGPEVPVEENPAKFLAYTLLERLPLFY-SP-LFRPLEGAVQTLFARV  186 (290)
T ss_dssp             --HHH-----TT---CHHHHHHHHHHHHHHHTTTSTTSCGGGCHHHHHHHHHTTSEEEEE-CT-TCTHHHHHHHHHHHHT
T ss_pred             --HHh-----cC---chhhHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHhCCCcEEE-ec-CcHHHHHHHHHHHHHh
Confidence              111     11   3444555555555544433333332 6889999999988877777 77 8899999999999999


Q ss_pred             ccccccccccccccccc--cccccC-----CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcce
Q 006659          516 ALMHSEGILAGEMKHGP--LALVDE-----NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCR  588 (636)
Q Consensus       516 ~~~~a~~~~~~Ef~HGp--~~~~~~-----~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~  588 (636)
                      ++.+|....   ..|+.  +..++.     ....+++..+   .+++.-..+.+++++..++.+...+            
T Consensus       187 Ak~~a~~~~---~~Hne~~i~~~~~p~~~~~~~~~v~l~d---~~r~~~~~~i~~~~~~~v~~v~~~g------------  248 (290)
T 1wiw_A          187 AKSLSLTPP---PSALEFFLVGLEARHEQGDPLAAVLLGP---GEEAALAKEILESRVDALAEVPATG------------  248 (290)
T ss_dssp             TCCCCBCCC---SSHHHHHHHTTSSCGGGGTTEEEEEESC---SHHHHHHHHHHTTTSSEEEEECCCS------------
T ss_pred             cCCCccccc---cccChhhhccccCccccccceEEEEecc---hhHHHHHHHHHHhcCCceEEEeCCC------------
Confidence            999999976   99988  655552     2234444443   4454333344466777777664432            


Q ss_pred             EEEcCCCCcchhhHHHHH-HHHHHHHHHHHHcCCCCCCCCCCcc
Q 006659          589 VIEVPQVEDCLQPVINIV-PLQLLAYHLTVLRGYNVDQPRNLAK  631 (636)
Q Consensus       589 ~~~~p~~~~~~~~~~~~v-~~q~la~~lA~~~G~~pd~pr~l~k  631 (636)
                             .+.+..+++++ .+.+.|+|||+.+|+||.....+.+
T Consensus       249 -------~s~L~~l~~Li~~~d~asvYLAl~~G~DP~~~~~I~~  285 (290)
T 1wiw_A          249 -------ANRLAQVMALWYRMAWTAYYLALLYGVDPGDHGLLER  285 (290)
T ss_dssp             -------SSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCCSCC-
T ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence                   23566777666 4699999999999999998877764

>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}

Probab=98.99  E-value=2e-09  Score=103.45  Aligned_cols=154  Identities=12%  Similarity=0.152  Sum_probs=121.8

Q ss_pred             HHHHHHHhc--hHHHHHHHHHhcCCC-eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEE
Q 006659          468 NKVREVLKL--DQEMKVLAKQLIAEQ-SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILV  544 (636)
Q Consensus       468 ~~~~~~~~~--~~~~~~~a~~l~~~~-~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~  544 (636)
                      +.++++.+.  .+.++++++.+...+ +++++|.|.++.+|.+++.+|... ++++..+...++.|++...+++++.+|+
T Consensus        20 ~~l~~t~~~l~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dvvI~   98 (201)
T 3fxa_A           20 NAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCI-ERPAVFLTPSDAVHGTLGVLQKEDILIL   98 (201)
T ss_dssp             HHHHTHHHHSCHHHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHT-TCCEEECCHHHHTTTGGGGCCTTCEEEE
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhc-CCcEEEeCchHHHhhhhhcCCCCCEEEE
Confidence            334444432  466788888888884 999999999999999999999985 7899999889999999988999999888


Q ss_pred             EEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc--------chhhHHHHHHHHHHHHHHH
Q 006659          545 IATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED--------CLQPVINIVPLQLLAYHLT  616 (636)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~--------~~~~~~~~v~~q~la~~lA  616 (636)
                      +...|.+ ..+.+.++.++++|.+++.||+.....+..  .+|..+.+|...+        ..+.+..++.+++|++.++
T Consensus        99 iS~sG~t-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~--~ad~~l~~~~~~e~~~~~~~~~~s~~~~l~~~d~L~~~l~  175 (201)
T 3fxa_A           99 ISKGGNT-GELLNLIPACKTKGSTLIGVTENPDSVIAK--EADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLM  175 (201)
T ss_dssp             ECSSSCC-HHHHTTHHHHHHHTCEEEEEESCTTSHHHH--HCSEEEECCCSCCCSTTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCC-HHHHHHHHHHHHcCCeEEEEECCCCChhHH--hCCEEEEcCCCccccccCCCchHHHHHHHHHHHHHHHHHH
Confidence            8877765 446678889999999999999877654321  2567888875322        2345556678899999999


Q ss_pred             HHcCCCCCC
Q 006659          617 VLRGYNVDQ  625 (636)
Q Consensus       617 ~~~G~~pd~  625 (636)
                      ..+|.++++
T Consensus       176 ~~~g~~~~~  184 (201)
T 3fxa_A          176 TYMNYTKEQ  184 (201)
T ss_dssp             HHTTCCHHH
T ss_pred             HhcCCCHHH
Confidence            999999874

>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}

Probab=98.99  E-value=4e-09  Score=102.78  Aligned_cols=145  Identities=15%  Similarity=0.159  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHhcC-----CCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcc
Q 006659          477 DQEMKVLAKQLIA-----EQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDAC  551 (636)
Q Consensus       477 ~~~~~~~a~~l~~-----~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~  551 (636)
                      .+.++++++.+..     .++++++|.|.++.+|.+++.+|... .+++..+...++.|++...+++++++|++...|.+
T Consensus        41 ~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~l-g~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t  119 (220)
T 3etn_A           41 TDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCST-GIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKT  119 (220)
T ss_dssp             CTHHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHT-TCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCC
T ss_pred             HHHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCC
Confidence            4556777777766     89999999999999999999999975 56888888889999999999999999999877765


Q ss_pred             hHHHHHHHHHHHh--cCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc--------chhhHHHHHHHHHHHHHHHHHcCC
Q 006659          552 FSKQQSVIQQLHA--RKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED--------CLQPVINIVPLQLLAYHLTVLRGY  621 (636)
Q Consensus       552 ~~~~~~~~~~~~~--~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~--------~~~~~~~~v~~q~la~~lA~~~G~  621 (636)
                       ..+.+.++.+++  +|++++.||+.....+..  .+|..+.+|...+        ..+.+..++.+++|++.++..+|.
T Consensus       120 -~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~--~aD~~l~~~~~~e~~~~~~~~~~S~~~~l~lld~L~~~l~~~~g~  196 (220)
T 3etn_A          120 -REIVELTQLAHNLNPGLKFIVITGNPDSPLAS--ESDVCLSTGHPAEVCTLGMTPTTSTTVMTVIGDILVVQTMKRTEF  196 (220)
T ss_dssp             -HHHHHHHHHHHHHCTTCEEEEEESCTTSHHHH--HSSEEEECCCCCCCSTTSCSSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             -HHHHHHHHHHHhcCCCCeEEEEECCCCChhHH--hCCEEEEcCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence             556788899999  999999999876554321  2567788874322        235566777899999999999999


Q ss_pred             CCCC
Q 006659          622 NVDQ  625 (636)
Q Consensus       622 ~pd~  625 (636)
                      ++++
T Consensus       197 ~~~~  200 (220)
T 3etn_A          197 TIEE  200 (220)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9875

>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}

Probab=98.97  E-value=8.5e-09  Score=108.75  Aligned_cols=199  Identities=16%  Similarity=0.015  Sum_probs=129.8

Q ss_pred             cccchHHHHHHHc-CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccc--h-hcccCCC-CCCcEEEEEcCCCCC
Q 006659          305 LLGGLKDHLKTIR-RSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASD--L-VDRQAPI-YREDTAVFVSQSGET  379 (636)
Q Consensus       305 ~~~~l~~~~~~l~-~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e--~-~~~~~~~-~~~dlvI~iS~SG~t  379 (636)
                      +.+.++++++. + ..+.|+++|+|+|+..+..+.+.+.. .+.++.+.+..+  + ......+ .+++++|++|.||+|
T Consensus        52 ~~~~i~~i~~~-~~~~~~Vv~iGIGGS~LG~~~~~~aL~~-~~~~~~~~~n~dp~~~~~~l~~l~~~~TlviviSKSGtT  129 (415)
T 1zzg_A           52 TLREVRRYREA-NPWVEDFVLIGIGGSALGPKALEAAFNE-SGVRFHYLDHVEPEPILRLLRTLDPRKTLVNAVSKSGST  129 (415)
T ss_dssp             HHHHHHHHHHT-CTTCSEEEEECCGGGTHHHHHHHHHHCC-SCCEEEEECSCCHHHHHHHHHHSCGGGEEEEEEESSSCC
T ss_pred             CHHHHHHHHHH-hcCCCEEEEEccCccHHHHHHHHHHHhc-CCCceEEecCCCHHHHHHHHhhCCCCCEEEEEEeCCCCC
Confidence            35677777777 5 68999999999999999988888765 456666654222  2 2222235 456799999999999


Q ss_pred             HHHHHHHHHHHHc-----C----CeEEEEEcCCCCccccccCee----EEcCCCCcccccchhhHHHHHHHHHHHHHHHh
Q 006659          380 ADTLQALEYASEN-----G----ALCVGITNTVGSAIARKTHCG----VHINAGAEIGVASTKAYTSQIVVMAMLALAIG  446 (636)
Q Consensus       380 ~e~i~al~~ak~~-----g----~~vi~IT~~~~s~La~~ad~~----l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~  446 (636)
                      .||+.+++.+|+.     |    .++|+||++.+|+|.+.|+..    +.++..    +....|..+.+.++  ++..++
T Consensus       130 ~ET~~~~~~ar~~l~~~~G~~~~~~~vavT~~~~s~L~~~a~~~Gi~~f~~~d~----VGGRySv~SavGL~--~~~~~G  203 (415)
T 1zzg_A          130 AETLAGLAVFLKWLKAHLGEDWRRHLVVTTDPKEGPLRAFAEREGLKAFAIPKE----VGGRFSALSPVGLL--PLAFAG  203 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGGGGEEEEECSSSSHHHHHHHHHTCEEEECCTT----CCGGGCTTSHHHHH--HHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCccccCeEEEEeCCCCChHHHHHHHhCCcEEEeccC----CCcccHHHHHHHHH--HHHHcC
Confidence            9999999999987     7    899999999999999998743    344321    11222222222221  111121


Q ss_pred             cCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHH---hcCCCeEEEEeCC-CCHHHHHHHHHHHHHhcccc
Q 006659          447 GDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQ---LIAEQSLLVFGRG-YNYATALEGALKVKEVALMH  519 (636)
Q Consensus       447 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~---l~~~~~~~~lG~G-~~~~~A~e~alKl~E~~~~~  519 (636)
                          .+   .+++++..+.+.+.+...++ ++..-.+|-.   ..+.+...++... .....+....+-++|..+..
T Consensus       204 ----~d---~~~lL~GA~~md~~~~~~~~-~N~~~~~al~~~~~~g~~~~~i~pY~~~l~~f~~~~qQL~~ES~GK~  272 (415)
T 1zzg_A          204 ----AD---LDALLMGARKANETALAPLE-ESLPLKTALLLHLHRHLPVHVFMVYSERLSHLPSWFVQLHDESLGKV  272 (415)
T ss_dssp             ----CC---HHHHHHHHHHHHHHHHSCGG-GCHHHHHHHHHHHTTTSSEEEEEECCSTTTTHHHHHHHHHHHHHSEE
T ss_pred             ----CC---HHHHHHHHHHHHHHHhcchh-hCHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHHHhhhcCc
Confidence                11   25666677777766665522 2333333322   2566565666554 55677888888999977654

>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}

Probab=98.94  E-value=3.6e-09  Score=112.96  Aligned_cols=200  Identities=15%  Similarity=0.046  Sum_probs=127.7

Q ss_pred             ccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhc-----------CCcEEEeeccc--h-hcccCCCC-CCcEE
Q 006659          306 LGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELS-----------DLPVTMEIASD--L-VDRQAPIY-REDTA  370 (636)
Q Consensus       306 ~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~-----------~~~~~~~~~~e--~-~~~~~~~~-~~dlv  370 (636)
                      .+.++++++.++.+++|+++|+|+|+..+..+.+.+....           ++.+.+.+..+  + ......++ +++++
T Consensus        65 ~~~i~~~a~~i~~~~~Vv~IGIGGS~LG~~~~~~aL~~~~~~~~~~~~~~~~~~v~~~~nvdp~~~~~~l~~L~~~~Tlv  144 (460)
T 2q8n_A           65 IDSVKSLEDWIINFDTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVDPDLMSSVLDRIDPKTTLF  144 (460)
T ss_dssp             HHHHHTTHHHHTTCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSCTTTTTTCCEEEEECSCCHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHhhhhcccccccccCCcceEEecCCCHHHHHHHHhcCCCCCEEE
Confidence            5677888888889999999999999999999988886542           45555554222  2 22233454 45699


Q ss_pred             EEEcCCCCCHHHHHHHHHHHHc-----C---CeEEEEEcCCCCccccccCe----eEEcCCCCcccccchhhHHHHHHHH
Q 006659          371 VFVSQSGETADTLQALEYASEN-----G---ALCVGITNTVGSAIARKTHC----GVHINAGAEIGVASTKAYTSQIVVM  438 (636)
Q Consensus       371 I~iS~SG~t~e~i~al~~ak~~-----g---~~vi~IT~~~~s~La~~ad~----~l~~~~~~e~~~~~t~s~~~~~~~l  438 (636)
                      |++|.||+|.||+.+++.+|+.     |   .++|+||++.+|+|.+.||.    ++.++..    +....|..+.+.++
T Consensus       145 IviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~VAvT~~~~s~L~~~A~~~Gi~~f~~~d~----VGGRySvlSavGL~  220 (460)
T 2q8n_A          145 NVISKSGSTAEVMATYSIARGILEAYGLDPREHMLITTDPEKGFLRKLVKEEGFRSLEVPPG----VGGRFSVLTPVGLL  220 (460)
T ss_dssp             EEECSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEEECSSSSHHHHHHHHHTCEEEECCTT----CCGGGCTTSHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHHHHhcCCccCeEEEEeCCCCChHHHHHHHhCCceEeeccc----cCcchHHHHHHHHH
Confidence            9999999999999999999987     7   89999999999999999985    2344321    11222222222221


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHH-HhchHHHHHHH--H---HhcCCCeEEEEeCC-CCHHHHHHHHHH
Q 006659          439 AMLALAIGGDTISTQARREAIIDGLCDLPNKVREV-LKLDQEMKVLA--K---QLIAEQSLLVFGRG-YNYATALEGALK  511 (636)
Q Consensus       439 ~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~a--~---~l~~~~~~~~lG~G-~~~~~A~e~alK  511 (636)
                      .+  ..+    +.+   .+++++..+.+.+.+... ++ ++..-.+|  .   ...+.+...++... .....+....+-
T Consensus       221 ~~--~~~----G~d---i~~lL~GA~~md~~~~~~~~~-~N~~~~~a~~~~~~~~~g~~~~~i~pY~~~L~~f~~w~qQL  290 (460)
T 2q8n_A          221 SA--MAE----GID---IDELHEGAKDAFEKSMKENIL-ENPAAMIALTHYLYLNKGKSISVMMAYSNRMIYLVDWYRQL  290 (460)
T ss_dssp             HH--HHT----TCC---HHHHHHHHHHHHHHTTCSCGG-GCHHHHHHHHHHHHHHTTCCEEEEEESSGGGHHHHHHHHHH
T ss_pred             HH--HHc----CCC---HHHHHHHHHHHHHHhccCChh-hCHHHHHHHHHHHHHhCCCCeeEEecchHHHHHHHHHHhhh
Confidence            11  111    111   245555555554444332 11 12112222  1   13566666666554 557778888899


Q ss_pred             HHHhcccc
Q 006659          512 VKEVALMH  519 (636)
Q Consensus       512 l~E~~~~~  519 (636)
                      ++|..+..
T Consensus       291 ~~ES~GK~  298 (460)
T 2q8n_A          291 WAESLGKR  298 (460)
T ss_dssp             HHHHHCCS
T ss_pred             hhhhcCCc
Confidence            99977544

>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}

Probab=98.86  E-value=1.6e-08  Score=93.17  Aligned_cols=96  Identities=10%  Similarity=0.015  Sum_probs=67.8

Q ss_pred             HHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHH
Q 006659          311 DHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYAS  390 (636)
Q Consensus       311 ~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak  390 (636)
                      .+++.+.+-+.||++|+|.|...+..+-+-..   +.+-.....     ....+++.|++|++|.||+++..+++++.+|
T Consensus        30 llaqai~~~g~IyvfG~Ghs~~~~~e~~~~~e---~l~~~~~~~-----~~~~i~~~D~vii~S~Sg~n~~~ie~A~~ak  101 (170)
T 3jx9_A           30 LLAQALVGQGKVYLDAYGEFEGLYPMLSDGPD---QMKRVTKIK-----DHKTLHAVDRVLIFTPDTERSDLLASLARYD  101 (170)
T ss_dssp             HHHHHHHTTCCEEEEECGGGGGGTHHHHTSTT---CCTTEEECC-----TTCCCCTTCEEEEEESCSCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEECCCcHHHHHHHHHcccC---Cccchhhhh-----hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            33445566699999999999876655433222   222211111     1226789999999999999999999999999


Q ss_pred             HcCCeEEEEEc-CCCCcc-ccccCee
Q 006659          391 ENGALCVGITN-TVGSAI-ARKTHCG  414 (636)
Q Consensus       391 ~~g~~vi~IT~-~~~s~L-a~~ad~~  414 (636)
                      ++|+++|+||+ ...... .+++|++
T Consensus       102 e~G~~vIaITs~~~~~~~~~~L~d~a  127 (170)
T 3jx9_A          102 AWHTPYSIITLGDVTETLERSIAPLA  127 (170)
T ss_dssp             HHTCCEEEEESSCCCTTGGGSSSCEE
T ss_pred             HCCCcEEEEeCcchhccccCcHHHHH
Confidence            99999999999 333221 3566655

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A

Probab=98.83  E-value=5.2e-08  Score=92.16  Aligned_cols=151  Identities=11%  Similarity=0.156  Sum_probs=111.7

Q ss_pred             HHHHHHHhc--hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEE
Q 006659          468 NKVREVLKL--DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVI  545 (636)
Q Consensus       468 ~~~~~~~~~--~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l  545 (636)
                      +.+++..+.  .+.++++++.+.+.++++++|.|.++.+|.+++.+|.+.. +++..+.  ++ |  ...+++++.+|++
T Consensus        13 ~~l~~t~~~l~~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~~--~~-~--~~~~~~~d~vI~i   86 (186)
T 1m3s_A           13 NELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMG-FNAHIVG--EI-L--TPPLAEGDLVIIG   86 (186)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTT-CCEEETT--ST-T--CCCCCTTCEEEEE
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcC-CeEEEeC--cc-c--ccCCCCCCEEEEE
Confidence            334444442  4567888888888999999999999999999999998864 4666553  32 3  3457888888888


Q ss_pred             EeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc--------hhhH------HHHHHHHHH
Q 006659          546 ATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC--------LQPV------INIVPLQLL  611 (636)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~--------~~~~------~~~v~~q~l  611 (636)
                      ...|.+ ..+.+.++.++++|++++.||+.....+.  ..+|..+.+|...+.        ..|+      ..++++++|
T Consensus        87 S~sG~t-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~--~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~L  163 (186)
T 1m3s_A           87 SGSGET-KSLIHTAAKAKSLHGIVAALTINPESSIG--KQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAV  163 (186)
T ss_dssp             CSSSCC-HHHHHHHHHHHHTTCEEEEEESCTTSHHH--HHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHHHHHHH
T ss_pred             cCCCCc-HHHHHHHHHHHHCCCEEEEEECCCCCchH--HhCCEEEEeCCccccCCCCcccccccCccHHHHHHHHHHHHH
Confidence            877766 55677889999999999999997654332  124677888854332        1232      346778999


Q ss_pred             HHHHHHHcCCCCCCCC
Q 006659          612 AYHLTVLRGYNVDQPR  627 (636)
Q Consensus       612 a~~lA~~~G~~pd~pr  627 (636)
                      .+.++..+|.+++..+
T Consensus       164 ~~~~~~~~~~~~~~~~  179 (186)
T 1m3s_A          164 ILKLMEKKGLDSETMF  179 (186)
T ss_dssp             HHHHHHHTTCCTTTCC
T ss_pred             HHHHHHHcCCCHHHHH
Confidence            9999999999998764

>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis}

Probab=98.58  E-value=2.7e-07  Score=100.03  Aligned_cols=189  Identities=15%  Similarity=0.063  Sum_probs=120.8

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEee---ccchhcccCCC-CCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEI---ASDLVDRQAPI-YREDTAVFVSQSGETADTLQALEYASE  391 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~---~~e~~~~~~~~-~~~dlvI~iS~SG~t~e~i~al~~ak~  391 (636)
                      ..+.|+++|+|+|+.....+...+....  ++++.+.+   +.++......+ .+++++|++|.||+|.||+.+++.+|+
T Consensus       142 ~i~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~~~~~l~~l~~e~TLvIViSKSGtT~ETl~na~~ar~  221 (549)
T 2wu8_A          142 RISTVVNIGIGGSDLGPVMVYQALRHYADAGISARFVSNVDPADLIATLADLDPATTLFIVASKTFSTLETLTNATAARR  221 (549)
T ss_dssp             BCCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSHHHHHHHHTTCCGGGEEEEEECSSSCCHHHHHHHHHHHH
T ss_pred             ccceEEEEeccchHHHHHHHHHHHHhhccCCCeEEEEccCCHHHHHHHHhcCCCCcEEEEEEeCCCCCHhHHHHHHHHHH
Confidence            4789999999999999999988887763  46666665   34443333344 468899999999999999999999998


Q ss_pred             c-----C-----CeEEEEEcCCCCcccccc-C--eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 006659          392 N-----G-----ALCVGITNTVGSAIARKT-H--CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA  458 (636)
Q Consensus       392 ~-----g-----~~vi~IT~~~~s~La~~a-d--~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~  458 (636)
                      .     |     ..+|+||++. +++.+.+ |  .++.++...-    ...|..+.+.+.  +++.++      .+.+++
T Consensus       222 ~l~~~~G~~~~~~h~VAvT~~~-s~~~~~gid~~~~F~~~d~VG----GRySv~SaVGL~--~al~~G------~d~~~~  288 (549)
T 2wu8_A          222 WLTDALGDAAVSRHFVAVSTNK-RLVDDFGINTDNMFGFWDWVG----GRYSVDSAIGLS--LMTVIG------RDAFAD  288 (549)
T ss_dssp             HHHHHHCGGGGGGTEEEECSCH-HHHHHHTCCGGGEECCCTTSC----GGGCTTTGGGHH--HHHHHC------HHHHHH
T ss_pred             HHHHhcCcchhcCEEEEECCCc-HHHHhcCcccccEEEeeecCC----cchHHHHHHHHH--HHHhcC------hhHHHH
Confidence            7     7     6899999874 6887776 5  6676653211    112222222211  111111      134566


Q ss_pred             HHHHHhhhHHHHHHH-Hhch-HHHHH----HHHHhcCCCeEEEEeCC-CCHHHHHHHHHHHHHhcccc
Q 006659          459 IIDGLCDLPNKVREV-LKLD-QEMKV----LAKQLIAEQSLLVFGRG-YNYATALEGALKVKEVALMH  519 (636)
Q Consensus       459 ~~~~l~~l~~~~~~~-~~~~-~~~~~----~a~~l~~~~~~~~lG~G-~~~~~A~e~alKl~E~~~~~  519 (636)
                      +++..+.+.+.+... ++.+ +..-.    +...+.+.+...++... .....+....+-.+|..+..
T Consensus       289 lL~GA~~md~~f~~~~~~~N~p~~lal~~~~~~~~~g~~~~~~lpY~~~L~~f~~w~qQL~mES~GK~  356 (549)
T 2wu8_A          289 FLAGFHIIDRHFATAPLESNAPVLLGLIGLWYSNFFGAQSRTVLPYSNDLSRFPAYLQQLTMESNGKS  356 (549)
T ss_dssp             HHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHSCCCEEEEEESCGGGTTHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHHhCCCCCeEEEEeChHHHHHHHHHHHHHHHHhcCCc
Confidence            777777666666543 1211 11112    22234466766666555 34566677788899999764

>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...

Probab=98.56  E-value=1.1e-06  Score=95.28  Aligned_cols=188  Identities=15%  Similarity=0.045  Sum_probs=118.5

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEeecc--ch-hcccCCC-CCCcEEEEEcCCCCCHHHHHHHHHHHH-
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEIAS--DL-VDRQAPI-YREDTAVFVSQSGETADTLQALEYASE-  391 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~~~--e~-~~~~~~~-~~~dlvI~iS~SG~t~e~i~al~~ak~-  391 (636)
                      .+.|+++|+|+|+.....+...+....  +.++.+.+..  ++ ......+ .+++++|++|.||+|.||+.+++.+|+ 
T Consensus       149 i~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~i~~~l~~L~~e~TLvIViSKSGtT~ETl~na~~ar~~  228 (557)
T 2cxn_A          149 ITDIINIGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFTTQETITNAETAKEW  228 (557)
T ss_dssp             CCEEEEECCGGGTHHHHHHHHHTGGGGTTSCEEEEECCSSHHHHHHHHTTCCTTTEEEEEECSSSCCHHHHHHHHHHHHH
T ss_pred             cceEEEEeccchHHHHHHHHHHHhhhccCCCeEEEEecCCHHHHHHHHhcCCCCcEEEEEEcCCCCChhHHHHHHHHHHH
Confidence            689999999999999999988887663  4566665331  22 2223345 578899999999999999999999987 


Q ss_pred             ---c-C------CeEEEEEcCCCCcccccc-C--eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 006659          392 ---N-G------ALCVGITNTVGSAIARKT-H--CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA  458 (636)
Q Consensus       392 ---~-g------~~vi~IT~~~~s~La~~a-d--~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~  458 (636)
                         + |      ..+|+||.+. +++++.. +  .++.++...-    ...|..+.+.+..  ++.++      .+.+++
T Consensus       229 l~~~~G~~~~~~~h~VavTt~~-s~~~~~gi~~~~~F~~~d~VG----GRySv~SaVGL~~--a~~~G------~d~~~~  295 (557)
T 2cxn_A          229 FLEAAKDPSAVAKHFVALSTNT-AKVKEFGIDPQNMFEFWDWVG----GRYSLWSAIGLSI--ALHVG------FDHFEQ  295 (557)
T ss_dssp             HHHHHCCGGGGGGTEEEEESCH-HHHHHHTCCGGGEEECCTTSC----GGGCTTTGGGHHH--HHHHC------HHHHHH
T ss_pred             HHHhcCccchhcCEEEEEeCCc-HHHHHcCCCcccEEEeecCCC----cccHHHHHHHHHH--HHHcC------hHHHHH
Confidence               4 5      5799999874 7777765 4  4666653211    1122222222111  11111      244677


Q ss_pred             HHHHHhhhHHHHHHH-HhchH-H----HHHHHHHhcCCCeEEEEeCC-CCHHHHHHHHHHHHHhcccc
Q 006659          459 IIDGLCDLPNKVREV-LKLDQ-E----MKVLAKQLIAEQSLLVFGRG-YNYATALEGALKVKEVALMH  519 (636)
Q Consensus       459 ~~~~l~~l~~~~~~~-~~~~~-~----~~~~a~~l~~~~~~~~lG~G-~~~~~A~e~alKl~E~~~~~  519 (636)
                      +++..+.+.+.+... ++.+. .    +.-+...+.+.+...++-.. .....+....+-.+|..+..
T Consensus       296 lL~GA~~md~~f~~~~l~~N~p~llal~~~~~~~~~g~~~~~~lpY~~~L~~f~~w~qQL~mES~GK~  363 (557)
T 2cxn_A          296 LLSGAHWMDQHFLKTPLEKNAPVLLALLGIWYINCYGCETHALLPYDQYMHRFAAYFQQGDMESNGKY  363 (557)
T ss_dssp             HHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHTSCCCEEEEEESCGGGTTHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccCChhhCHHHHHHHHHHHHHhcCCCCeEEEEEchHHHHHHHHHHHHHHHHhcCCc
Confidence            777777777666553 22211 1    11122234466655555555 44566777788899999774

>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3

Probab=98.54  E-value=8.2e-07  Score=83.33  Aligned_cols=139  Identities=11%  Similarity=0.127  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      .+.++++++.+...++++++|.|.++.+|.+++.+|... +.++..+.  ++ |  ...+++++.+|++...|.+ ..+.
T Consensus        27 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~~--~~-~--~~~~~~~d~vi~iS~sG~t-~~~~   99 (180)
T 1jeo_A           27 KNKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHL-GFKSYFVG--ET-T--TPSYEKDDLLILISGSGRT-ESVL   99 (180)
T ss_dssp             HHHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHT-TCCEEETT--ST-T--CCCCCTTCEEEEEESSSCC-HHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHc-CCeEEEeC--CC-c--cccCCCCCEEEEEeCCCCc-HHHH
Confidence            355777888888889999999999999999999999874 45666553  22 2  3456788888888877766 4567


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhH------HHHHHHHHHHHHHHHHcCCCCCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPV------INIVPLQLLAYHLTVLRGYNVDQ  625 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------~~~v~~q~la~~lA~~~G~~pd~  625 (636)
                      +.++.++++|.+++.||+.... +..  .+|..+.+|...+.+.++      ..++.++++.+.++..+|.+++.
T Consensus       100 ~~~~~ak~~g~~vi~IT~~~~s-l~~--~ad~~l~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~~~~~~~~~~~~  171 (180)
T 1jeo_A          100 TVAKKAKNINNNIIAIVCECGN-VVE--FADLTIPLEVKKSKYLPMGTTFEETALIFLDLVIAEIMKRLNLDESE  171 (180)
T ss_dssp             HHHHHHHTTCSCEEEEESSCCG-GGG--GCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHCCCcEEEEeCCCCh-HHH--hCCEEEEeCCcccccccchhHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            7889999999999999997665 432  356788888532222332      24567899999999999988764

>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}

Probab=98.44  E-value=3.1e-06  Score=88.87  Aligned_cols=140  Identities=14%  Similarity=0.149  Sum_probs=107.2

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~  384 (636)
                      +.++++++.+.+.++++++|.|..+..|..++..+..+..+++..+.+.||.|.+. .++++..||++...+.. ..++.
T Consensus       215 ~~~~~~a~~~~~~~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~alid~~~pvi~~~~~d~~~~k~~~  294 (372)
T 3tbf_A          215 TEIDQISEYFSDKEHTIFLGRGLYYPIAIEGALKLKEISYIHAEAYPSGELKHGPLALVDKNMPIVAVVPNDELLDKTLS  294 (372)
T ss_dssp             HHHHHHHGGGTTCCEEEEEECTTHHHHHHHHHHHHHHHHCCEEEEEEGGGTTTTTTTTCCTTCEEEEEECSSTTHHHHHH
T ss_pred             HHHHHHHHHHhccCCEEEEecCcCHHHHHHHHHHHHHHhCcCcceeeHHHhcCccHhhcCCCCeEEEEecCCchHHHHHH
Confidence            34677888888999999999999999999999999999999999999999988764 46788888888766654 45678


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCcc-ccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          385 ALEYASENGALCVGITNTVGSAI-ARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~L-a~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      .++..+.+|+++++|++.....+ ...+|.++.++..++.     -+....+..+.+|+..++..++.
T Consensus       295 ~~~e~~~rg~~vi~i~~~~~~~~~~~~~~~~i~~p~~~~~-----l~pl~~~i~~Qlla~~~A~~rG~  357 (372)
T 3tbf_A          295 NLQEVHARGGKLILFVDKAVKERVNFDNSIVLELDAGHDF-----SAPVVFTIPLQLLSYHVAIIKGT  357 (372)
T ss_dssp             HHHHHHHTTCEEEEEEEGGGGGGCCCTTCEEEEECCCSTT-----HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCeEEEEECCCcccccccccceEEECCCCchh-----HhHHHHHHHHHHHHHHHHHHcCc
Confidence            89999999999999998643133 3567778877643222     23333455667777777765554

>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A

Probab=98.42  E-value=9.9e-07  Score=96.37  Aligned_cols=188  Identities=13%  Similarity=0.086  Sum_probs=117.1

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEee---ccchhcccCCC-CCCcEEEEEcCCCCCHHHHHHHHHHHHc
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEI---ASDLVDRQAPI-YREDTAVFVSQSGETADTLQALEYASEN  392 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~---~~e~~~~~~~~-~~~dlvI~iS~SG~t~e~i~al~~ak~~  392 (636)
                      .+.|+++|+|+|+.....+...+....  ++++.+.+   +.++......+ .+++++|++|.||+|.||+.+++.||+.
T Consensus       197 i~~VV~IGIGGS~LGp~~v~eaL~~~~~~~~~v~fvsNvDp~~i~~~l~~l~~e~TLfIViSKSGTT~ETl~na~~ar~~  276 (613)
T 2o2c_A          197 IRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLFIVASKTFTTQETITNALSARRA  276 (613)
T ss_dssp             CCEEEEECCGGGTHHHHHHHHHTGGGSCTTSEEEEECCSSHHHHHHHHHHCCGGGEEEEEECSSSCCHHHHHHHHHHHHH
T ss_pred             eeeEEEEeccchHHHHHHHHHHhhhhccCCceEEEEccCCHHHHHHHHhcCCCCCEEEEEEeCCCCChhHHHHHHHHHHH
Confidence            689999999999999999988887763  45666655   33333222223 4688999999999999999999988876


Q ss_pred             -----C-----------CeEEEEEcCCCCcccccc-C--eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcH
Q 006659          393 -----G-----------ALCVGITNTVGSAIARKT-H--CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQ  453 (636)
Q Consensus       393 -----g-----------~~vi~IT~~~~s~La~~a-d--~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~  453 (636)
                           |           ..+|+||.+. +++++.. |  .++.++...-    ...|..+.+.++  +++.++      .
T Consensus       277 l~~~~G~~g~~~~~~~a~h~VAVTt~~-s~~~~~gi~~~~~F~~~d~VG----GRySvlSaVGL~--~a~~~G------~  343 (613)
T 2o2c_A          277 LLDYLRSRGIDEKGSVAKHFVALSTNN-QKVKEFGIDEENMFQFWDWVG----GRYSMWSAIGLP--IMISIG------Y  343 (613)
T ss_dssp             HHHHHHHTTCCCTTCHHHHEEEEESCH-HHHHHHTCCGGGEEECCTTSC----GGGCTTSGGGHH--HHHHHC------H
T ss_pred             HHHhcCCcccccchhhcCEEEEEeCCc-HHHHHcCCCccceEeeecCCC----cchHHHHHHHHH--HHHHcC------h
Confidence                 5           4799999874 7777665 4  3666653211    112222222211  111121      2


Q ss_pred             HHHHHHHHHHhhhHHHHHHH-HhchH-HHHHHH----HHhcCCCeEEEEeCC-CCHHHHHHHHHHHHHhcccc
Q 006659          454 ARREAIIDGLCDLPNKVREV-LKLDQ-EMKVLA----KQLIAEQSLLVFGRG-YNYATALEGALKVKEVALMH  519 (636)
Q Consensus       454 ~~~~~~~~~l~~l~~~~~~~-~~~~~-~~~~~a----~~l~~~~~~~~lG~G-~~~~~A~e~alKl~E~~~~~  519 (636)
                      +.++++++....+.+.+... ++.+. ..-.+.    ..+.+.+...++-.. .....+....+-.+|..+..
T Consensus       344 d~~~elL~GA~~md~~f~~a~l~~N~p~llall~iw~~~~~G~~~~~llpY~~~L~~f~~w~qQL~mES~GK~  416 (613)
T 2o2c_A          344 ENFVELLTGAHVIDEHFANAPPEQNVPLLLALVGVWYINFFGAVTHAILPYDQYLWRLPAYLQQLDMESNGKY  416 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHTSCCCEEEEEEECGGGTTHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHhccCChhhCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHHHHHHhcCCc
Confidence            44667777777776666553 22211 111122    233466654444444 44567777888899999764

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}

Probab=98.42  E-value=1.7e-06  Score=81.59  Aligned_cols=140  Identities=11%  Similarity=0.073  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccc-cccccccccccccCCCCeEEEEeCCcchHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGIL-AGEMKHGPLALVDENLPILVIATRDACFSKQ  555 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~-~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~  555 (636)
                      .+.++++++.+...++++++|.|.++.+|.+++.++.. .+.++.... ..+..|.....+++++.+|++...|.+ ..+
T Consensus        26 ~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t-~~~  103 (187)
T 3sho_A           26 PEAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNS-LGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYL-RDT  103 (187)
T ss_dssp             HHHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHH-TTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCC-HHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHh-cCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCC-HHH
Confidence            46678888888889999999999999999999999976 566777766 334444555667888888888776655 456


Q ss_pred             HHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-ch-hhHHHHHHHHHHHHHHHHHcC
Q 006659          556 QSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-CL-QPVINIVPLQLLAYHLTVLRG  620 (636)
Q Consensus       556 ~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-~~-~~~~~~v~~q~la~~lA~~~G  620 (636)
                      .+.++.++++|.+++.||+.....+..  .+|..+.+|...+ .+ +.+..+..+++|...++...|
T Consensus       104 ~~~~~~ak~~g~~vi~IT~~~~s~l~~--~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~~~~~~  168 (187)
T 3sho_A          104 VAALAGAAERGVPTMALTDSSVSPPAR--IADHVLVAATRGVGHSLSPVGLIAVVNLLLAEIAVREP  168 (187)
T ss_dssp             HHHHHHHHHTTCCEEEEESCTTSHHHH--HCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCcchh--hCcEEEEecCCCCcccccHhHHHHHHHHHHHHHHHhCc
Confidence            778899999999999999876553321  2567888885322 33 334455567888888876654

>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}

Probab=98.40  E-value=2e-06  Score=80.86  Aligned_cols=150  Identities=17%  Similarity=0.167  Sum_probs=109.0

Q ss_pred             HHHHHHHHhc-hHHHHHHHHHhcCCC-eEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEE
Q 006659          467 PNKVREVLKL-DQEMKVLAKQLIAEQ-SLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILV  544 (636)
Q Consensus       467 ~~~~~~~~~~-~~~~~~~a~~l~~~~-~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~  544 (636)
                      .+.++++.+. ++.++++++.+...+ +++++|.|.++.+|.+++.++... ..++......++.|.....+++++.+|+
T Consensus        24 ~~~l~~t~~~~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~vI~  102 (183)
T 2xhz_A           24 RECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFAST-GTPSFFVHPGEAAHGDLGMVTPQDVVIA  102 (183)
T ss_dssp             HHHHTTGGGTSSHHHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTT-TCCEEECCTTHHHHHTSTTCCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhc-CceEEEeCchHHhhhhhccCCCCCEEEE
Confidence            3444444443 347788888888877 999999999999999999998764 5577777667777777777888898888


Q ss_pred             EEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-------chhhH-HHHHHHHHHHHHHH
Q 006659          545 IATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-------CLQPV-INIVPLQLLAYHLT  616 (636)
Q Consensus       545 l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-------~~~~~-~~~v~~q~la~~lA  616 (636)
                      +...|.+ ..+.+.++.++++|.+++.||+.....+..  .+|..+.+|...+       .+... ..+..+++|...++
T Consensus       103 iS~sG~t-~~~~~~~~~ak~~g~~vi~IT~~~~s~la~--~ad~~l~~~~~~e~~~~~~~~~~S~~~~~~~~d~L~~~~~  179 (183)
T 2xhz_A          103 ISNSGES-SEITALIPVLKRLHVPLICITGRPESSMAR--AADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALL  179 (183)
T ss_dssp             ECSSSCC-HHHHHHHHHHHTTTCCEEEEESCTTSHHHH--HSSEEEECCCSCCSSTTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCC-HHHHHHHHHHHHCCCCEEEEECCCCChhHH--hCCEEEEeCCCccccccCCCcchHHHHHHHHHHHHHHHHH
Confidence            8876655 456778889999999999999977654321  2567888874322       23333 34556788888887


Q ss_pred             HHcC
Q 006659          617 VLRG  620 (636)
Q Consensus       617 ~~~G  620 (636)
                      ..+|
T Consensus       180 ~~~~  183 (183)
T 2xhz_A          180 KARG  183 (183)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            7665

>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} SCOP: c.80.1.2

Probab=98.39  E-value=2.5e-06  Score=93.13  Aligned_cols=188  Identities=15%  Similarity=0.082  Sum_probs=117.4

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEee---ccchhcccCCC-CCCcEEEEEcCCCCCHHHHHHHHHHHH-
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEI---ASDLVDRQAPI-YREDTAVFVSQSGETADTLQALEYASE-  391 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~---~~e~~~~~~~~-~~~dlvI~iS~SG~t~e~i~al~~ak~-  391 (636)
                      .+.|+++|+|+|+.....+...+....  +.++.+.+   +.++......+ .+++++|++|.||+|.||+.+++.+|+ 
T Consensus       196 i~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~i~~~l~~l~~e~TLfIViSKSGtT~ETl~na~~ar~~  275 (605)
T 1t10_A          196 IYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSARNA  275 (605)
T ss_dssp             CCEEEEECCGGGTHHHHHHHHHTGGGSCSSSEEEEECCSSTHHHHHHHTTSCGGGEEEEEECSSSCCHHHHHHHHHHHHH
T ss_pred             cceEEEEeccchHHHHHHHHHHhhhhccCCCeEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCCChhHHHHHHHHHHH
Confidence            689999999999999999988887763  46666665   44443333344 467899999999999999999988886 


Q ss_pred             ---c-C-----------CeEEEEEcCCCCcccccc-C--eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcH
Q 006659          392 ---N-G-----------ALCVGITNTVGSAIARKT-H--CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQ  453 (636)
Q Consensus       392 ---~-g-----------~~vi~IT~~~~s~La~~a-d--~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~  453 (636)
                         + |           ..+|+||.+. +++++.. |  .++.++...    ....|..+.+.+  .+++.++      .
T Consensus       276 l~~~~g~~~~~~~~~~~~h~VavTt~~-s~~~~~gi~~~~~F~~~d~V----GGRySv~SaVGL--~la~~~G------~  342 (605)
T 1t10_A          276 LMSYLKENGISTDGAVAKHFVALSTNT-EKVREFGIDTVNMFAFWDWV----GGRYSVWSAIGL--SVMLSIG------Y  342 (605)
T ss_dssp             HHHHHHHTTCCCTTHHHHHEEEECSCH-HHHHHTTCCGGGEECCCTTS----CGGGCTTSGGGH--HHHHHHH------H
T ss_pred             HHHhcccccccccccccCEEEEEeCCc-hHHHHcCCCcccEEeeeccC----CcchHHHHHHHH--HHHHhcC------h
Confidence               2 2           5789999874 7777765 4  356664321    111222222221  1222221      1


Q ss_pred             HHHHHHHHHHhhhHHHHHHH-HhchH-HHHH----HHHHhcCCCeEEEEeCC-CCHHHHHHHHHHHHHhcccc
Q 006659          454 ARREAIIDGLCDLPNKVREV-LKLDQ-EMKV----LAKQLIAEQSLLVFGRG-YNYATALEGALKVKEVALMH  519 (636)
Q Consensus       454 ~~~~~~~~~l~~l~~~~~~~-~~~~~-~~~~----~a~~l~~~~~~~~lG~G-~~~~~A~e~alKl~E~~~~~  519 (636)
                      +.++++++..+.+.+.+... ++.+. ..-.    +...+.+.+...++-.. .....+....+-.+|..+..
T Consensus       343 d~~~~lL~GA~~md~~f~~a~l~~N~p~llall~~~~~~~~G~~~~~llpY~~~L~~f~~w~qQL~mES~GK~  415 (605)
T 1t10_A          343 DNFVEFLTGAHVMDNHFASTPTEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPAYLQQLDMESNGKG  415 (605)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHTTCCCEEEEEESSGGGTTHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHHhCCCCCeEEEEECHHHHHHHHHHHHHHHHHhcCCc
Confidence            34667777777776666553 12211 1111    22233466655555554 44566777788899999764

>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A

Probab=98.32  E-value=7.1e-07  Score=94.95  Aligned_cols=200  Identities=16%  Similarity=0.095  Sum_probs=120.0

Q ss_pred             cchHHHHHHHc-CCCeEEEEeechhHHHHHHHHHHHHHhc------CCcEEEe-ecc--ch-hcccCCC-CCCcEEEEEc
Q 006659          307 GGLKDHLKTIR-RSRRIVFIGCGTSYNAALAARPILEELS------DLPVTME-IAS--DL-VDRQAPI-YREDTAVFVS  374 (636)
Q Consensus       307 ~~l~~~~~~l~-~~~~I~i~G~G~S~~aa~~~~~~~~~~~------~~~~~~~-~~~--e~-~~~~~~~-~~~dlvI~iS  374 (636)
                      +.++++++.++ ..+.|+++|+|+|+..+..+.+.+....      +..+... +..  +. ......+ .+++++|++|
T Consensus        59 ~~i~~~a~~v~~~~~~VV~IGIGGS~LG~~~v~~aL~~~~~~~~~~~~~~~fv~~NvDp~~i~~~l~~l~~~~TlviviS  138 (445)
T 1b0z_A           59 SRIKQAAERIRNHSDALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDLSINVIS  138 (445)
T ss_dssp             HHHHHHHHHHHHHCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSTTSCEEEEESSSCCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCEEEEEecChhHHHHHHHHHHHhhhcccccccCCceEEEeCCCCHHHHHHHHhhCCcCcEEEEEEe
Confidence            45566666664 5899999999999999998888876643      1334433 221  11 1112234 5789999999


Q ss_pred             CCCCCHHHHHHHHHHHH-----cC-----CeEEEEEcCCCCccccccCee----EEcCCCCcccccchhhHHHHHHHHHH
Q 006659          375 QSGETADTLQALEYASE-----NG-----ALCVGITNTVGSAIARKTHCG----VHINAGAEIGVASTKAYTSQIVVMAM  440 (636)
Q Consensus       375 ~SG~t~e~i~al~~ak~-----~g-----~~vi~IT~~~~s~La~~ad~~----l~~~~~~e~~~~~t~s~~~~~~~l~l  440 (636)
                      .||+|.||+.+++.+|+     .|     ..+|+||++..++|.+.|+..    +.++...    ....|..+.+.++ .
T Consensus       139 KSGtT~ET~~~~~~ar~~l~~~~G~~~~~~~~vavT~~~~g~L~~~a~~~Gi~~F~~~d~V----GGRySv~SavGll-p  213 (445)
T 1b0z_A          139 KSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPDNI----GGRYSVLTAVGLL-P  213 (445)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHCHHHHGGGEEEEECSSCSHHHHHHHHHTCEEEECCTTB----CSCCTTSTTTTHH-H
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCchhhcCEEEEEecCCcchhHHHHHHhCCeEEeccCCC----CcccHHHHHHHHH-H
Confidence            99999999999999997     47     789999998888999887643    3443211    1112222222111 1


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHH--HH---hcCCCeEEEEeCC-CCHHHHHHHHHHHHH
Q 006659          441 LALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLA--KQ---LIAEQSLLVFGRG-YNYATALEGALKVKE  514 (636)
Q Consensus       441 L~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a--~~---l~~~~~~~~lG~G-~~~~~A~e~alKl~E  514 (636)
                      +++ .+.      + ++++++..+.+.+.+...--.++..-.+|  ..   -.+.+...++-.. .....+....+-.+|
T Consensus       214 ~al-~G~------d-~~~lL~GA~~md~~~~~~~~~~N~~~~lal~~~~~~~~g~~~~~~~pY~~~L~~f~~w~qQL~~E  285 (445)
T 1b0z_A          214 IAV-AGL------N-IDRMMEGAASAYHKYNNPDLLTNESYQYAAVRNILYRKGKAIELLVNYEPSLHYVSEWWKQLFGE  285 (445)
T ss_dssp             HHH-HTC------C-HHHHHHHHHHHHHHHCCCCGGGCHHHHHHHHHHHHHHTTCCEEEEEESSGGGHHHHHHHHHHHHH
T ss_pred             HHh-cCC------C-HHHHHHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHhCCCCeEEEEEchHHHHHHHHHHHHHHHH
Confidence            111 221      1 45566666655554433210112222222  11   1255655555554 556777788888999


Q ss_pred             hcccc
Q 006659          515 VALMH  519 (636)
Q Consensus       515 ~~~~~  519 (636)
                      ..+..
T Consensus       286 S~GK~  290 (445)
T 1b0z_A          286 SEGKD  290 (445)
T ss_dssp             HHCCT
T ss_pred             hccCC
Confidence            88654

>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}

Probab=98.28  E-value=6.9e-06  Score=85.81  Aligned_cols=138  Identities=12%  Similarity=0.113  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHhcC--CCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHH
Q 006659          477 DQEMKVLAKQLIA--EQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSK  554 (636)
Q Consensus       477 ~~~~~~~a~~l~~--~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~  554 (636)
                      .+.++++++.+..  .++++++|.|.++.+|..++.++....++++......||.+.....+++++.+|++...|.+ ..
T Consensus        39 ~~~i~~~~~~i~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~t-~e  117 (355)
T 2a3n_A           39 RQKAEQVADEIYQAGFSSLFFASVGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDT-KE  117 (355)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEEEHHHHHHHCCTTCCTTCEEEEECSSSCC-HH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEccHHHHHHHHHHHHHHhhcCCeEEEcCcHHHHhhchhcCCCCCEEEEEeCCCCC-HH
Confidence            3456667777666  78999999999999999999888887889999888889988776667888988888877765 44


Q ss_pred             HHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 006659          555 QQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRG  620 (636)
Q Consensus       555 ~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G  620 (636)
                      +.+.++.++++|.+++.||+..+..+.  ..+|..+.+|...+.   ......+++++..++..+|
T Consensus       118 ~~~a~~~ak~~Ga~vi~IT~~~~S~La--~~ad~~l~~~~~~~~---~~~~~~~~ll~~~l~~~~~  178 (355)
T 2a3n_A          118 SVAIAEWCKAQGIRVVAITKNADSPLA--QAATWHIPMRHKNGV---EYEYMLLYWLFFRVLSRNN  178 (355)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCTTSHHH--HTCSEEEECCCSSCH---HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCeEEEEECCCCChhh--HhCCEEEEeCCCcch---hHHHHHHHHHHHHHHHHcC
Confidence            667888899999999999997655432  135778888854332   3445567888888888888

>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*

Probab=98.24  E-value=1.2e-05  Score=84.50  Aligned_cols=139  Identities=15%  Similarity=0.136  Sum_probs=109.0

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~  384 (636)
                      +.++++++.+.+.++++++|.|.++.+|..++..+..+..+++..+...|+.|.+. .++++..+|++...|.+ ..+.+
T Consensus       212 ~~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl~E~~~i~ae~~~~~E~~HGp~~lv~~~~~vi~~~~~~~~~~~~~~  291 (368)
T 1moq_A          212 KRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKS  291 (368)
T ss_dssp             THHHHHHHHHTTCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHHHhccccccccHHHhccCcHHHcCCCceEEEEEcCCchHHHHHH
Confidence            35678888999999999999999999999999999999999999999999988764 46788889998877766 67788


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      .++.++++|+++++|++...+.+...+|..|.++..++.     -+....+..+.+|+..++..++
T Consensus       292 ~~~e~~~~g~~v~~i~~~~~~~~~~~~~~~i~~p~~~~~-----l~pl~~~v~~qlla~~~A~~~G  352 (368)
T 1moq_A          292 NIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEV-----IAPIFYTVPLQLLAYHVALIKG  352 (368)
T ss_dssp             HHHHTGGGTCCEEEEEEGGGCCCCBTTEEEEEECCCCGG-----GHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCeEEEEECCCcchhcccCCceEEcCCCchh-----HHHHHHHHHHHHHHHHHHHHcC
Confidence            889999999999999987545566777777766643321     2222334466777777765544

>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}

Probab=98.20  E-value=1.8e-05  Score=81.81  Aligned_cols=134  Identities=13%  Similarity=0.033  Sum_probs=97.9

Q ss_pred             HHHHhhhHHHHHHHHhc-hHHHHHHHHHh--cCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccc
Q 006659          460 IDGLCDLPNKVREVLKL-DQEMKVLAKQL--IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALV  536 (636)
Q Consensus       460 ~~~l~~l~~~~~~~~~~-~~~~~~~a~~l--~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~  536 (636)
                      .+++.+-|+.+++.++. .+..+++++.+  .+.++++++|.|.++.+|..++-++....++++......++.+-....+
T Consensus         9 ~kEI~eqP~~~~~~l~~~~~~~~~~~~~i~~~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~v~~~~~~~~~~~~~~~~   88 (334)
T 3hba_A            9 EQEARTAPQKIAEQLLANDAITESLGSVLREFKPKFVMIVGRGSSDHAGVFAKYLFEIEASIPTFAAAPSVASVYGKTLK   88 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCEEEESSGGGCHHHHHHHHHHHHHHCCCEEECCHHHHHTSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEEEcchHHHHhcccCC
Confidence            34555566666666653 34456666665  7889999999999999999999999988898888754443333333456


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE  596 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~  596 (636)
                      ++++.+|++...|.+ ..+.+.++.++++|.+++.|++..+..+..  .+|..+.++..+
T Consensus        89 ~~~dl~i~iS~SG~T-~e~~~a~~~ak~~g~~~i~IT~~~~S~la~--~ad~~l~~~~g~  145 (334)
T 3hba_A           89 LAGGLVIVISQSGRS-PDILAQARMAKNAGAFCVALVNDETAPIKD--IVDVVIPLRAGE  145 (334)
T ss_dssp             CTTCEEEEEESSSCC-HHHHHHHHHHHHTTCEEEEEESCTTSGGGG--TSSEEEECCCCC
T ss_pred             CCCCEEEEEeCCCCC-HHHHHHHHHHHHcCCcEEEEeCCCCChHHH--hcCEeeeecCCC
Confidence            788888888877765 445678888899999999999987665432  357888887543

>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A

Probab=98.16  E-value=1.7e-05  Score=76.49  Aligned_cols=111  Identities=19%  Similarity=0.159  Sum_probs=78.3

Q ss_pred             HHHHHHHhcCCCeEEEEeCCCCHHHHHHHH------HHHHHhccccccccc-ccc-------c------cccccccccCC
Q 006659          480 MKVLAKQLIAEQSLLVFGRGYNYATALEGA------LKVKEVALMHSEGIL-AGE-------M------KHGPLALVDEN  539 (636)
Q Consensus       480 ~~~~a~~l~~~~~~~~lG~G~~~~~A~e~a------lKl~E~~~~~a~~~~-~~E-------f------~HGp~~~~~~~  539 (636)
                      ++.+++.+...++++++|.|.++.+|..++      .++.+ ..+++..+. ...       +      .|.....++++
T Consensus        54 ~~~i~~~l~~~~~I~i~G~G~S~~~A~~~a~~l~~~~~~~~-~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (212)
T 2i2w_A           54 AVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENR-PGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREG  132 (212)
T ss_dssp             HHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHHHHCTTS-SSCSEEECCCTTCGGGGSCCCSCSSHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHHhhhcccC-CCCeEEecCChHHhhHhhccCCHHHHHHHHHHhcCCCC
Confidence            344444577889999999999999999888      34333 345555543 221       1      13333457888


Q ss_pred             CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCC
Q 006659          540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQ  594 (636)
Q Consensus       540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~  594 (636)
                      +.+|++...|.+ ..+.+.++.++++|.+++.||+.....+.  ..+|..+.+|.
T Consensus       133 DvvI~iS~SG~t-~~~i~~~~~ak~~G~~vIaIT~~~~s~La--~~aD~~l~~~~  184 (212)
T 2i2w_A          133 DVLLGISTSGNS-ANVIKAIAAAREKGMKVITLTGKDGGKMA--GTADIEIRVPH  184 (212)
T ss_dssp             CEEEEECSSSCC-HHHHHHHHHHHHHTCEEEEEEETTCGGGT--TCSSEEEEECC
T ss_pred             CEEEEEECCCCC-HHHHHHHHHHHHCCCeEEEEECCCCCchH--HhCCEEEEcCC
Confidence            888888877766 55678889999999999999997755442  23578888886

>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}

Probab=98.13  E-value=3.2e-05  Score=80.86  Aligned_cols=158  Identities=13%  Similarity=0.126  Sum_probs=115.7

Q ss_pred             HHHHhhhHHHHHHHHhc--hHHHHHHHH-HhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccc
Q 006659          460 IDGLCDLPNKVREVLKL--DQEMKVLAK-QLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALV  536 (636)
Q Consensus       460 ~~~l~~l~~~~~~~~~~--~~~~~~~a~-~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~  536 (636)
                      .+++.+-|+.++++++.  .+..+.+.. .+.+.++++++|.|.++.+|..++-.+....++++..+...||.+.+.. +
T Consensus        17 ~kEI~eqP~~l~~~l~~~~~~~~~~~~~~~~~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~~~~se~~~~~~~-~   95 (366)
T 3knz_A           17 FQGMNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLDDETLA-R   95 (366)
T ss_dssp             HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEEECGGGCCHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHHHCCCeEEEcchHHHhhccC-C
Confidence            45566677777777754  233344432 4578899999999999999999999988888999999999999886543 4


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc----hhhHH-HHHHHHHH
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC----LQPVI-NIVPLQLL  611 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~-~~v~~q~l  611 (636)
                      ++++.+|++...|.+ ..+.+.++.++++|.+++.||+..+..+..  .+|..+.++..++.    ...+. .++.+.+|
T Consensus        96 ~~~dlvI~iS~SGeT-~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~--~aD~~l~~~~g~E~~~a~tks~tsql~~l~lL  172 (366)
T 3knz_A           96 SGKALVVGISQGGGS-LSTLAAMERARNVGHITASMAGVAPATIDR--AADYILTVPCGEETAGAKTKGYHCTVLNLMLL  172 (366)
T ss_dssp             SCSEEEEEEESSSCC-HHHHHHHHHHHHTTCEEEEEESSSSCGGGG--GCSEECCCCCCC------CTHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCC-HHHHHHHHHHHHcCCCEEEEECCCCChhhh--hcCEEEecCCCccccccccHHHHHHHHHHHHH
Confidence            788888888877765 445678888999999999999987665432  35677777643331    22333 34467888


Q ss_pred             HHHHHHHcCC
Q 006659          612 AYHLTVLRGY  621 (636)
Q Consensus       612 a~~lA~~~G~  621 (636)
                      +..++..+|.
T Consensus       173 a~~l~~~~g~  182 (366)
T 3knz_A          173 ALAVAGQQQR  182 (366)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhCC
Confidence            8888888874

>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}

Probab=98.13  E-value=6.4e-06  Score=85.07  Aligned_cols=143  Identities=11%  Similarity=0.069  Sum_probs=107.8

Q ss_pred             hchHHHHHHHHHhc--CCCeEEEEeCCCCHHHHHHHHHHHHHhc-cccccccccccccccccccccCCCCeEEEEeCCcc
Q 006659          475 KLDQEMKVLAKQLI--AEQSLLVFGRGYNYATALEGALKVKEVA-LMHSEGILAGEMKHGPLALVDENLPILVIATRDAC  551 (636)
Q Consensus       475 ~~~~~~~~~a~~l~--~~~~~~~lG~G~~~~~A~e~alKl~E~~-~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~  551 (636)
                      +..+.++++++.+.  +.++++++|.|.++.+|..++.+|.... ++++......||.+.+...+++++.+|++...|.+
T Consensus         8 ~~~~~i~~~v~~i~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T   87 (329)
T 3eua_A            8 KVNREVQAFLQDLKGKTIDHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNT   87 (329)
T ss_dssp             GSCHHHHHHHHHHTTCCCCEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHHCCTTCSTTEEEEEEESSSCC
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEEEccHHHHhcCccCCCCCcEEEEEcCCCCC
Confidence            34566778888887  7899999999999999999999999887 99999999999999876667888888888877765


Q ss_pred             hHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcC
Q 006659          552 FSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRG  620 (636)
Q Consensus       552 ~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G  620 (636)
                       ..+.+.++.++++|.+++.|++..+..+..  .+|..+.++..++.--+......+.+++..++..+|
T Consensus        88 -~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~--~ad~~l~~~~g~e~~va~t~~~~l~~la~~l~~~~~  153 (329)
T 3eua_A           88 -PETVKAAAFARGKGALTIAMTFKPESPLAQ--EAQYVAQYDWGDEALAINTNYGVLYQIVFGTLQVLE  153 (329)
T ss_dssp             -HHHHHHHHHHHHTTCEEEEEESCTTSHHHH--HSSEEEECCCSTTCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHCCCCEEEEECCCCChHHH--hCCEEEEeCCCCccchhhHHHHHHHHHHHHHHHHhc
Confidence             456678888999999999999877654421  356778887544321111122355566666666655

>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*

Probab=98.13  E-value=4.5e-05  Score=80.16  Aligned_cols=140  Identities=11%  Similarity=0.134  Sum_probs=107.3

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCC-CHHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGE-TADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~-t~e~i~  384 (636)
                      +.++++++.+...++++++|.|.++.+|..++-.+..+..+++..+...|+.|.+. .++++..||++.-.+. ...++.
T Consensus       219 ~~~~~~a~~~~~~~~~~~lG~G~~~~~A~E~aLKl~E~s~i~ae~~~~~E~~HGp~ali~~~~~vi~l~~~~~~~~~~~~  298 (375)
T 2zj3_A          219 DEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQN  298 (375)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEEECSSTTHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEccCCCHHHHHHHHHHHHHHhhhccccccHHHhccCcHHHcCCCCeEEEEECCChhHHHHHH
Confidence            34678888999999999999999999999999999999999999999999988764 4677777777765555 466788


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      .++..+.+|+++++|++..+..+...+|.++.++..++.     -+....+..+.+|+..++..++.
T Consensus       299 ~~~e~~~rg~~v~~i~~~~~~~~~~~~~~~i~~p~~~~~-----l~pl~~~v~~Qlla~~~A~~~G~  360 (375)
T 2zj3_A          299 ALQQVVARQGRPVVICDKEDTETIKNTKRTIKVPHSVDC-----LQGILSVIPLQLLAFHLAVLRGY  360 (375)
T ss_dssp             HHHHHHHTTCCCEEEEETTCHHHHHHCSSEEEECCCCTT-----THHHHHTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCeEEEEECCCchhhhhccCcEEEcCCCchh-----HHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999987555555566777777653321     12223345667777777765543

>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*

Probab=98.13  E-value=3.6e-05  Score=80.68  Aligned_cols=142  Identities=11%  Similarity=0.142  Sum_probs=100.7

Q ss_pred             chHHHHHH-HcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCC-CCHHHHH
Q 006659          308 GLKDHLKT-IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSG-ETADTLQ  384 (636)
Q Consensus       308 ~l~~~~~~-l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG-~t~e~i~  384 (636)
                      .++++++. +.+.++++++|.|..+.+|..++..+..+..+++..+...|+.|.+. .++++..+|++...| ....++.
T Consensus       210 ~~~~~a~~~~~~~~~~~~lG~G~~~~~A~e~alKl~E~s~i~ae~~~a~E~~HGp~~lv~~~~~vi~i~~~~~~~~~~~~  289 (367)
T 2poc_A          210 KIKDLCNSSLNDQKSLLLLGRGYQFATALEGALKIKEISYMHSEGVLAGELKHGILALVDEDLPIIAFATRDSLFPKVMS  289 (367)
T ss_dssp             HHHHHHHSGGGGCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEETTCC-----------CCEEEECCGGGCCHHHHH
T ss_pred             HHHHHHHHHhccCCcEEEEcCCCChHHHHHHHHHHHHHhccccccccHHHhccchHhhccCCCcEEEEEcCChhHHHHHH
Confidence            46778888 88999999999999999999999999999999999999999988764 456777777765444 4678889


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccC-eeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHH
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTH-CGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQA  454 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad-~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~  454 (636)
                      .++..+.+|+++++|++..+..+...+| .++.++..++.     -+....+..+.+|+..++..++.+.+
T Consensus       290 ~~~e~~~rg~~v~~i~~~~~~~~~~~~~~~~i~~p~~~~~-----l~pl~~~~~~Qlla~~~A~~~G~dpd  355 (367)
T 2poc_A          290 AIEQVTARDGRPIVICNEGDAIISNDKVHTTLEVPETVDC-----LQGLLNVIPLQLISYWLAVNRGIDVD  355 (367)
T ss_dssp             HHHHHHHTTCCCEEEEETTCCSCC---CCEEEEECCCCGG-----GHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHcCCeEEEEECCCchhhhccCCccEEEeCCCchh-----HHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999999876666766666 77777653321     22334456677788888776665433

>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*

Probab=98.13  E-value=2.7e-05  Score=80.26  Aligned_cols=132  Identities=13%  Similarity=0.112  Sum_probs=100.7

Q ss_pred             chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCCHH-HHHH
Q 006659          308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGETAD-TLQA  385 (636)
Q Consensus       308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e-~i~a  385 (636)
                      .++++++.+.+ ++++++|.|..+.+|..++-.+.....+++......|+.|.+. .++++..+|++.  |.+.+ +.+.
T Consensus       177 ~~~~~a~~~~~-~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~E~~HGp~~li~~~~~vi~~~--~~~~~~~~~~  253 (325)
T 2e5f_A          177 YIREIVESFDF-QNIIFLGSGLLYPVALEASLKMKEMSIFWSEAYPTFEVRHGFKAIADEKTLVVLMV--EEPFEWHEKL  253 (325)
T ss_dssp             HHHHHHHHCCC-SEEEEEECTTHHHHHHHHHHHHHHHHCCEEEEEEGGGGGTTGGGGCSTTEEEEEEE--SSCCHHHHHH
T ss_pred             HHHHHHHHhcC-CCEEEEccCCCHHHHHHHHHHHHHHHHHHhhhcCHHHhhhccHhhcCCCCeEEEEe--CchHHHHHHH
Confidence            46788888889 9999999999999999999999999999999999999988764 467888888888  55544 9999


Q ss_pred             HHHHHHcCCeEEEEEcCCCCcccccc-CeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          386 LEYASENGALCVGITNTVGSAIARKT-HCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       386 l~~ak~~g~~vi~IT~~~~s~La~~a-d~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      ++..+++|+++++|++...    ..+ |..+.++..++. .    +....+..+.+|+..++..++.
T Consensus       254 ~~e~~~~g~~v~~i~~~~~----~~~~~~~~~~p~~~~~-l----~pl~~~~~~qlla~~~a~~~G~  311 (325)
T 2e5f_A          254 VKEFKNQGAKVLVISNSPQ----DLGQDYSIELPRLSKD-A----NPIPYLPIVQLLSYYKAVSRGL  311 (325)
T ss_dssp             HHHHHHTTCEEEEEESCCC----CCSCSEEEECCCCCTT-T----TTTTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCeEEEEeCCcc----cccCCcEEEeCCCchh-H----HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999998532    334 566777643222 1    1112245566677777655543

>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}

Probab=98.12  E-value=2.6e-05  Score=81.16  Aligned_cols=157  Identities=12%  Similarity=0.147  Sum_probs=113.4

Q ss_pred             HHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccC
Q 006659          460 IDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDE  538 (636)
Q Consensus       460 ~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~  538 (636)
                      .+++.+-|+.++++++. .+....+  ...+.++++++|.|.++.+|..++-++....++++..+...||.|......++
T Consensus         5 ~keI~eqP~~~~~~l~~~~~~~~~~--~~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~se~~~~~~~~~~~   82 (352)
T 3g68_A            5 QDYMLETPVRMREIISNADSLFNEV--KRTNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVKMYPFMITEDTFKFDNE   82 (352)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTTTG--GGSCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEEECGGGCCGGGGSSCCT
T ss_pred             HHHHHHHHHHHHHHHHhhHHhhhHh--hhcCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEEEcchhhhhcccCCCCC
Confidence            45566667777777653 1111111  14678899999999999999999999999899999999999998865544447


Q ss_pred             CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc----chhhHHH-HHHHHHHHH
Q 006659          539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED----CLQPVIN-IVPLQLLAY  613 (636)
Q Consensus       539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~-~v~~q~la~  613 (636)
                      ++.+|++...|.+ ..+.+.++.++++|.+++.|++..+..+..  .+|..+.++..++    ....+.. ++.+.+|+.
T Consensus        83 ~dlvI~iS~SG~T-~e~l~a~~~ak~~ga~~iaIT~~~~S~La~--~aD~~l~~~~g~E~~va~tksf~~ql~~l~~La~  159 (352)
T 3g68_A           83 NTLVVGVSQGGSS-YSTYNAMKLAEDKGCKIASMAGCKNALIDE--ISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGL  159 (352)
T ss_dssp             TEEEEEEESSSCC-HHHHHHHHHHHHTTCEEEEEESSTTCGGGG--GCSEECCCCCCCCCCSSCSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCC-HHHHHHHHHHHHCCCCEEEEeCCCCChHHH--hCCEEEEeCCCCCccccccHHHHHHHHHHHHHHH
Confidence            8888888877765 445678888999999999999987665432  3567777764332    2233433 345688899


Q ss_pred             HHHHHcCC
Q 006659          614 HLTVLRGY  621 (636)
Q Consensus       614 ~lA~~~G~  621 (636)
                      .++..+|.
T Consensus       160 ~l~~~~g~  167 (352)
T 3g68_A          160 QIAREKGI  167 (352)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHcCC
Confidence            99988874

>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}

Probab=98.11  E-value=2.7e-05  Score=80.79  Aligned_cols=134  Identities=9%  Similarity=0.033  Sum_probs=96.5

Q ss_pred             HHHHhhhHHHHHHHHhc-hHHHHHHHHHh--cCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccc
Q 006659          460 IDGLCDLPNKVREVLKL-DQEMKVLAKQL--IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALV  536 (636)
Q Consensus       460 ~~~l~~l~~~~~~~~~~-~~~~~~~a~~l--~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~  536 (636)
                      .+++.+-|+.+++.++. ....+++++.+  .+.++++++|.|.++.+|..++-++....++++......++.|-....+
T Consensus        10 ~kEI~eqP~~~~~~l~~~~~~~~~~~~~~~~~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~   89 (344)
T 3fj1_A           10 RREIDEIPEAVQRLLDHGAQDVARVAAVLRLRDPSFVATVARGSSDHVCTYLSYAAELLLGLPVASLGPSVASVYDARLR   89 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHHHHHHCCCEEECCTHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEEecchHHhhhcccCC
Confidence            34555566666666653 34455666655  7889999999999999999999999888898888654333333233356


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE  596 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~  596 (636)
                      ++++.+|++...|.+ ..+.+.++.++++|.+++.|++..+..+..  .+|..+.++..+
T Consensus        90 ~~~dlvI~iS~SG~T-~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~--~ad~~l~~~~g~  146 (344)
T 3fj1_A           90 LDRALCLAVSQSGKS-PDIVAMTRNAGRDGALCVALTNDAASPLAG--VSAHTIDIHAGP  146 (344)
T ss_dssp             CTTEEEEEEESSSCC-HHHHHHHHHHHHTTCEEEEEESCTTSHHHH--TSSEEEECCCCC
T ss_pred             CCCcEEEEEcCCCCC-HHHHHHHHHHHHCCCcEEEEECCCCChHHH--hcCEeeecCCCC
Confidence            788888888877765 445678888899999999999877654421  357888887533

>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A

Probab=98.08  E-value=4.5e-05  Score=72.58  Aligned_cols=138  Identities=16%  Similarity=0.165  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHH-----Hhccccccccccc---------ccccccc------cccc
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVK-----EVALMHSEGILAG---------EMKHGPL------ALVD  537 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~-----E~~~~~a~~~~~~---------Ef~HGp~------~~~~  537 (636)
                      +.++.+++.+...++++++|.|.++.+|.+++.++.     ....+++......         ++.+..+      ..++
T Consensus        33 ~~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  112 (199)
T 1x92_A           33 QASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQ  112 (199)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHHHhCCC
Confidence            445566677888899999999999999999999984     3355666655422         3333321      2367


Q ss_pred             CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCC---cceEEEcCCCCcchhhHHHHHHHHHHHHH
Q 006659          538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGG---SCRVIEVPQVEDCLQPVINIVPLQLLAYH  614 (636)
Q Consensus       538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~v~~q~la~~  614 (636)
                      +++.+|++...|.+ ..+.+.++.++++|.+++.||+.....+.  ..   +|..+.+|...+.......+..++.|+..
T Consensus       113 ~~DvvI~iS~SG~t-~~~i~~~~~ak~~g~~vI~IT~~~~s~La--~~~~~ad~~l~~~~~~~~~~~~~~l~i~~~L~~~  189 (199)
T 1x92_A          113 PGDVLLAISTSGNS-ANVIQAIQAAHDREMLVVALTGRDGGGMA--SLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDL  189 (199)
T ss_dssp             TTCEEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEECTTCHHHH--HHCCTTCEEEECSCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEECCCCCcHH--hccccCCEEEEeCCCchHHHHHHHHHHHHHHHHH
Confidence            88888888776655 45567889999999999999997654332  13   57788888644332222334445666666


Q ss_pred             HHHH
Q 006659          615 LTVL  618 (636)
Q Consensus       615 lA~~  618 (636)
                      ++..
T Consensus       190 ~~~~  193 (199)
T 1x92_A          190 IDRQ  193 (199)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.08  E-value=3.8e-05  Score=80.65  Aligned_cols=158  Identities=9%  Similarity=0.044  Sum_probs=114.1

Q ss_pred             HHHHhhhHHHHHHHHhc-hHHHHHHHHHhcC-CCeEEEEeCCCCHHHHHHHHHHHHHhcccccccccccccccccccccc
Q 006659          460 IDGLCDLPNKVREVLKL-DQEMKVLAKQLIA-EQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVD  537 (636)
Q Consensus       460 ~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~-~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~  537 (636)
                      .+++.+-|+.++++++. .+.+.++++.+.. .++++++|.|.++.+|..++..+....++++......||.+.. ..++
T Consensus        18 ~kEI~eqp~~~~~~~~~~~~~l~~~~~~i~~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~~~~~~~~~~~-~~~~   96 (373)
T 2aml_A           18 MTYINEEEEMCRVILADFQTNAEKLESLVKNGAKEWLILATGSSLNAAQSAKYYIENLADVRITIEEPFNHLYYE-KLSS   96 (373)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTCCCEEEEEECHHHHHHHHHHHHHHHHHSSCEEEEECHHHHHHHC-CCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEEEecHHHHHHHHHHHHHHHHhCCcEEEECchhHHHhc-cCCC
Confidence            34555667777776654 3456666666544 6899999999999999999888888888888888777877653 2377


Q ss_pred             CCCCeEEEEeCCcchHHHHHHHHHHHhc-CCeEEEEecCCCCcCCCCCCcceEEEcCCCCc----chhhHHH-HHHHHHH
Q 006659          538 ENLPILVIATRDACFSKQQSVIQQLHAR-KGRLIVMCSKGDAASIFPGGSCRVIEVPQVED----CLQPVIN-IVPLQLL  611 (636)
Q Consensus       538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~-g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~-~v~~q~l  611 (636)
                      +++.+|++...|.+ ..+.+.++.++++ |.+++.||+..+..+..  .+|..+.+|...+    ....+.. ++.+.++
T Consensus        97 ~~dlvI~iS~SG~T-~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~--~ad~~l~~~~~~E~~~~~t~s~ts~~~~l~ll  173 (373)
T 2aml_A           97 HLDLVIGISQSGQS-TSTISALERVKKEASVPVVALTSDVTSEIAE--FADITLDIGSGKERVGYVTKGFTATVLTLMLT  173 (373)
T ss_dssp             TCCEEEEECSSSCB-HHHHHHHHHHHHHCCCCEEEEESCTTSGGGG--GCSEEEECSCCCCCSSSCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCC-HHHHHHHHHHHHhCCCcEEEEECCCCChHHH--hcCcceecCCCccccccccccHHHHHHHHHHH
Confidence            88888888876665 4556788889999 99999999987664432  3577888875432    1234443 4456778


Q ss_pred             HHHHHHHcCC
Q 006659          612 AYHLTVLRGY  621 (636)
Q Consensus       612 a~~lA~~~G~  621 (636)
                      +..++..+|.
T Consensus       174 ~~~l~~~~g~  183 (373)
T 2aml_A          174 GLHFAYKTVQ  183 (373)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhCC
Confidence            8888888774

>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}

Probab=98.07  E-value=8.6e-05  Score=70.40  Aligned_cols=141  Identities=14%  Similarity=0.143  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHH-----hccccccccccc---------ccccccc------cccc
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKE-----VALMHSEGILAG---------EMKHGPL------ALVD  537 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E-----~~~~~a~~~~~~---------Ef~HGp~------~~~~  537 (636)
                      +.++++++.+...++++++|.|.++.+|.+++.++..     ..++++......         ++.....      ..++
T Consensus        29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~  108 (196)
T 2yva_A           29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH  108 (196)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence            5567788888889999999999999999999999873     345565554321         2222211      3367


Q ss_pred             CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCC-CCcceEEEcCCCCcchhhHHHHHHHHHHHHHHH
Q 006659          538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFP-GGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLT  616 (636)
Q Consensus       538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA  616 (636)
                      +++.+|++...|.+ ..+.+.++.++++|.+++.||+......... ...|..+.+|...........+..++.|...+.
T Consensus       109 ~~DvvI~iS~SG~t-~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~~~~~~~l~~~~~L~~~~~  187 (196)
T 2yva_A          109 AGDVLLAISTRGNS-RDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLID  187 (196)
T ss_dssp             TTCEEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChhHHHHHHHHHHHHHHHHHH
Confidence            88888888776655 4566788999999999999999765433211 015778888864332222244455677777766


Q ss_pred             HHc
Q 006659          617 VLR  619 (636)
Q Consensus       617 ~~~  619 (636)
                      ...
T Consensus       188 ~~l  190 (196)
T 2yva_A          188 NTL  190 (196)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=98.06  E-value=0.00011  Score=82.24  Aligned_cols=138  Identities=15%  Similarity=0.140  Sum_probs=108.6

Q ss_pred             chHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHHH
Q 006659          308 GLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQA  385 (636)
Q Consensus       308 ~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~a  385 (636)
                      .++++++.+...++++++|.|..+.+|..++..+..+..+++..+...|+.+.+. .++++..+|++...|.. ..+++.
T Consensus       453 ~~~~la~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~s~i~ae~~~a~e~~HGp~~lv~~~~~vi~i~~~~~~~~~~~~~  532 (608)
T 2bpl_A          453 RIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSN  532 (608)
T ss_dssp             HHHHHHGGGTTCCEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCCTTCEEEEEECSSTTHHHHHHH
T ss_pred             HHHHHHHHhhCCCeEEEEecCcCHHHHHHHHHHHHHhccccceeecHHHhhhchHHHcCCCceEEEEECCChhHHHHHHH
Confidence            4677888888999999999999999999999999999999999999999987664 46778888888888877 478899


Q ss_pred             HHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659          386 LEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       386 l~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      ++..+++|+++++|++..+..+...+|.+|.++..++.     -+....+..+.+|+..++..++
T Consensus       533 ~~e~~~rg~~v~~i~~~~~~~~~~~~~~~i~~p~~~~~-----l~pl~~~v~~Qlla~~~A~~~G  592 (608)
T 2bpl_A          533 IEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEV-----IAPIFYTVPLQLLAYHVALIKG  592 (608)
T ss_dssp             HHHHHHTTCEEEEEEETTSCCCCBTTEEEEEECCCCGG-----GHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCeEEEEECCCchhhcccCCcEEEcCCCcch-----HHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999987446777777777777643221     2223344566677777765444

>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}

Probab=98.00  E-value=2.1e-05  Score=81.80  Aligned_cols=140  Identities=11%  Similarity=0.072  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhc---CCCeEEEEeCCCCHHHHHHHHHHHHHhc-cccccccccccccccccccccCCCCeEEEEeCCcchH
Q 006659          478 QEMKVLAKQLI---AEQSLLVFGRGYNYATALEGALKVKEVA-LMHSEGILAGEMKHGPLALVDENLPILVIATRDACFS  553 (636)
Q Consensus       478 ~~~~~~a~~l~---~~~~~~~lG~G~~~~~A~e~alKl~E~~-~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~  553 (636)
                      +.++++++.+.   +.++++++|.|.++.+|..++.++.... ++++......||.+.+...+++++.+|++...|.+ .
T Consensus        25 ~~i~~~~~~i~~~~~a~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T-~  103 (347)
T 3fkj_A           25 ENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNT-A  103 (347)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHSCCTTCSTTEEEEEEESSSCC-H
T ss_pred             HHHHHHHHHHHhhCCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCeEEEeCcHHHHhhCcCCCCCCCEEEEEeCCCCc-H
Confidence            44556666666   7899999999999999999999998887 99999999999999876667888889988877765 4


Q ss_pred             HHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCC---CcchhhHHHHHHHHHHHHHHHHHcC
Q 006659          554 KQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQV---EDCLQPVINIVPLQLLAYHLTVLRG  620 (636)
Q Consensus       554 ~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~v~~q~la~~lA~~~G  620 (636)
                      .+.+.++.++++|.+++.||+..+..+..  .+|..+.++..   ++.-..--....+-+++.+++..+|
T Consensus       104 e~l~a~~~ak~~Ga~~iaIT~~~~S~La~--~ad~~l~~~~g~g~~e~~~~t~~~~~l~llal~l~~~~~  171 (347)
T 3fkj_A          104 ETVAAARVAREKGAATIGLVYQPDTPLCE--YSDYIIEYQWARYPETVDPAQQKAAYSLWLALEILAQTE  171 (347)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESSTTCHHHH--TCSEEEECBCCCTTSCCCGGGBHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCcEEEEeCCCCChHHh--hcCeEEEeccCCCCCccchhHHHHHHHHHHHHHHHHHhC
Confidence            45678888899999999999877654421  35777888754   2311011112355667777777776

>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}

Probab=97.98  E-value=3.7e-05  Score=81.09  Aligned_cols=135  Identities=13%  Similarity=0.112  Sum_probs=99.5

Q ss_pred             hHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcC--CcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-H-HHH
Q 006659          309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSD--LPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-A-DTL  383 (636)
Q Consensus       309 l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~--~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~-e~i  383 (636)
                      ++++++.  +.++++++|.|.++..|..++-.+..+..  +++....+.||.|.+. .++++..||++...+.. . .-.
T Consensus       222 ~~~~a~~--~~~~~~~lGrG~~~~~A~E~ALKlkE~s~g~i~a~~~~~~e~~HGP~alvd~~~pvi~~~~~d~~t~~~~~  299 (393)
T 3odp_A          222 MKKIVGE--KFKRTVYLGAANAFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKSIIDDETLIVIFFSNDTYAREYEY  299 (393)
T ss_dssp             HHHHHTT--CCSEEEEECCTHHHHHHHHHHHHHHHHTTSSSEEEEECHHHHTTTGGGGCCTTEEEEEECCSSHHHHHHHH
T ss_pred             HHHHHhc--CCCeEEEEeCCcCHHHHHHHHHHHHHHhhccchheeecHhhheeccccccCCCceEEEEEcCCchhhHHHH
Confidence            4455544  88999999999999999999999988763  7888889999988764 46788888888755543 1 124


Q ss_pred             HHHHHHHHcC--CeEEEEEcCCCCccccccCeeEEcC-----CCCcccccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659          384 QALEYASENG--ALCVGITNTVGSAIARKTHCGVHIN-----AGAEIGVASTKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       384 ~al~~ak~~g--~~vi~IT~~~~s~La~~ad~~l~~~-----~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      .+++..+.+|  +++++||+..+..+...+|..|.++     ..++     .-+....+..+.+|+..++..++
T Consensus       300 ~~~~ev~arg~~~~vi~i~~~~~~~~~~~~~~~i~~p~~~~~~~~~-----~l~pi~~~ip~Qllay~~A~~~G  368 (393)
T 3odp_A          300 DLLKEVYSQNGNHKVLAISEYEDKLIEDNSDYFIAINKEEQEYEDD-----SFLSLDYLLNAQMYAFINSMELG  368 (393)
T ss_dssp             HHHHHHHHSSSCCEEEEEEEECCHHHHTTCSEEEEEESSCCCCSSG-----GGGHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCceEEEEEcCCcchhccCCcEEEEeCCccccCCCh-----HHhHHHHHHHHHHHHHHHHHHcC
Confidence            6889999988  9999999977767777889988776     2222     12333345556677777765544

>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3

Probab=97.93  E-value=0.00014  Score=69.23  Aligned_cols=138  Identities=13%  Similarity=0.105  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      .+.++++++.+...++++++|.|.++.+|.+.+.++... ..++...  .++ +  ...+++++.+|++...|.+ ..+.
T Consensus        34 ~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~~~~~--~~~-~--~~~~~~~DvvI~iS~SG~t-~~~i  106 (200)
T 1vim_A           34 LETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHL-GYTVYVV--GET-V--TPRITDQDVLVGISGSGET-TSVV  106 (200)
T ss_dssp             HHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHT-TCCEEET--TST-T--CCCCCTTCEEEEECSSSCC-HHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhc-CCeEEEe--CCc-c--ccCCCCCCEEEEEeCCCCc-HHHH
Confidence            455777888888889999999999999999999998654 3344333  222 1  2346788888888776665 4466


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcch--------hhHH------HHHHHHHHHHHHHHHcCCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCL--------QPVI------NIVPLQLLAYHLTVLRGYN  622 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~~~~------~~v~~q~la~~lA~~~G~~  622 (636)
                      ++++.++++|.+++.||+.....+..  .+|..+.+|...+..        .|+.      .++.++.+...+...+|.+
T Consensus       107 ~~~~~ak~~g~~vI~IT~~~~s~La~--~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lld~L~~~~~~~~~~~  184 (200)
T 1vim_A          107 NISKKAKDIGSKLVAVTGKRDSSLAK--MADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLT  184 (200)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTSHHHH--HCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCeEEEEECCCCChHHH--hCCEEEEECCcccccCCcccccccccccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            78889999999999999977553321  256788888543321        1332      2456799999999988876


Q ss_pred             C
Q 006659          623 V  623 (636)
Q Consensus       623 p  623 (636)
                      +
T Consensus       185 ~  185 (200)
T 1vim_A          185 E  185 (200)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A

Probab=97.89  E-value=9.9e-05  Score=70.00  Aligned_cols=136  Identities=11%  Similarity=0.021  Sum_probs=88.1

Q ss_pred             HHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHH-----hccccccccc--cc-------c------ccccccccccCC
Q 006659          480 MKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKE-----VALMHSEGIL--AG-------E------MKHGPLALVDEN  539 (636)
Q Consensus       480 ~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E-----~~~~~a~~~~--~~-------E------f~HGp~~~~~~~  539 (636)
                      ++.+++.+...++++++|.|.++.+|..++..+.-     ...+++....  ..       +      |.|.....++++
T Consensus        38 ~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (198)
T 2xbl_A           38 ADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEG  117 (198)
T ss_dssp             HHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCCCC
Confidence            44455555788999999999999999988765432     2334444442  11       1      122233346788


Q ss_pred             CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHH
Q 006659          540 LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVL  618 (636)
Q Consensus       540 ~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~  618 (636)
                      +.+|++...|.+ ..+.+.++.++++|.+++.||+.....+..  .+|..+.+|...+.......+..++.|+..+...
T Consensus       118 d~vI~iS~SG~t-~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~--~ad~~l~~~~~~~~~~~~~~l~i~~~L~~~~~~~  193 (198)
T 2xbl_A          118 DVLIGYSTSGKS-PNILAAFREAKAKGMTCVGFTGNRGGEMRE--LCDLLLEVPSADTPKIQEGHLVLGHIVCGLVEHS  193 (198)
T ss_dssp             CEEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEECSCCCTHHH--HCSEEEECSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCC-HHHHHHHHHHHHCCCeEEEEECCCCCcHHH--hCCEEEEeCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877766 556788899999999999999876543321  2467888886544333333444456666655544

>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}

Probab=97.78  E-value=0.00023  Score=74.90  Aligned_cols=136  Identities=12%  Similarity=0.153  Sum_probs=95.1

Q ss_pred             hHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcC--CcEEEeeccchhcccC-CCCCCcEEEEEcCCCCCHH--HH
Q 006659          309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSD--LPVTMEIASDLVDRQA-PIYREDTAVFVSQSGETAD--TL  383 (636)
Q Consensus       309 l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~--~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e--~i  383 (636)
                      ++++++.  ++++++++|.|..+.+|+.++-.+..+..  +++....+.+|.|-+. .++++..||++...+....  ..
T Consensus       222 i~~~a~~--~~~~~~~lGrG~~y~~A~EgALKlkE~s~Gei~a~~~~~~e~kHGP~alid~~~pVi~~~~~d~~~~~~~~  299 (389)
T 3i0z_A          222 VKELVDL--DFNRVIYLGAGPFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKSLINDNTVVLVFGTTTDYTRKYDL  299 (389)
T ss_dssp             HHHHHTS--CCSEEEEEESTHHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTTTGGGGCCTTEEEEEECCCSHHHHHHHH
T ss_pred             HHHHHhc--CCCeEEEEcCCCCHHHHHHHHHHHHHHccCcccceeecHhhccccchhhcCCCceEEEEEcCCchhhHHHH
Confidence            4455544  78999999999999999999999888876  8899999999988764 4688889998876665322  35


Q ss_pred             HHHHHHHHc--CCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCC
Q 006659          384 QALEYASEN--GALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS  451 (636)
Q Consensus       384 ~al~~ak~~--g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~  451 (636)
                      .+++..+.+  |+++++||+. +..+...+|..+..+....    ..-+....+..+.+|+..++..++.
T Consensus       300 ~~~~ev~arg~g~~vi~i~~~-~~~~~~~~~~~i~~~~~~~----~~l~pl~~~vp~QllAy~~A~~rG~  364 (389)
T 3i0z_A          300 DLVREVAGDQIARRVVLLSDQ-AFGLENVKEVALGCGGVLN----DIYRVFPYIVYAQLFALLTSLKVEN  364 (389)
T ss_dssp             HHHHHHHHHTCSSEEEEEESS-CCCCTTCEEEECCCSSCSC----GGGGHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCCCeEEEEECC-CcccccCceEEecCCCCcc----hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            678888887  7999999985 4445544444433321111    1123334456677778777765554

>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}

Probab=97.77  E-value=0.00049  Score=65.48  Aligned_cols=135  Identities=16%  Similarity=0.094  Sum_probs=89.2

Q ss_pred             HHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHH-----hcccccccccccc----ccccc----------c-ccccC
Q 006659          479 EMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKE-----VALMHSEGILAGE----MKHGP----------L-ALVDE  538 (636)
Q Consensus       479 ~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E-----~~~~~a~~~~~~E----f~HGp----------~-~~~~~  538 (636)
                      .++.+++.+...++++++|.|.+..+|.+.+.+|.=     -..+++.......    ..||.          + ..+++
T Consensus        35 a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~~  114 (201)
T 3trj_A           35 AAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGNE  114 (201)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCCC
Confidence            344555556778999999999999999999999872     3455555443110    01111          1 12678


Q ss_pred             CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCc---ceEEEcCCCCcchhhHHHHHHHHHHHHHH
Q 006659          539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGS---CRVIEVPQVEDCLQPVINIVPLQLLAYHL  615 (636)
Q Consensus       539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~v~~q~la~~l  615 (636)
                      ++.+|++...|.+ ..+.+.++.++++|.+++.|++.....+..  ..   |..+.+|...........+..++.|+..+
T Consensus       115 ~Dvvi~iS~SG~t-~~~~~~~~~ak~~g~~vi~iT~~~~s~la~--~a~~~d~~l~~~~~~~~~~~~~~l~i~~~l~~~v  191 (201)
T 3trj_A          115 DDILLVITTSGDS-ENILSAVEEAHDLEMKVIALTGGSGGALQN--MYNTDDIELRVPSDNIANIQENHFLIVHCLCDII  191 (201)
T ss_dssp             TCEEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEEETTCCGGGG--TCCTTCEEEEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCC-HHHHHHHHHHHHCCCcEEEEECCCCCHHHH--hhccCCEEEEeCCCCchHHHHHHHHHHHHHHHHH
Confidence            8888888776665 446778899999999999999877654432  24   78899996544333334445556665555


Q ss_pred             H
Q 006659          616 T  616 (636)
Q Consensus       616 A  616 (636)
                      .
T Consensus       192 ~  192 (201)
T 3trj_A          192 D  192 (201)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1

Probab=97.75  E-value=7.7e-05  Score=77.38  Aligned_cols=151  Identities=16%  Similarity=0.158  Sum_probs=98.4

Q ss_pred             HHHhhhHHHHHHHHhc----hHHHHHHHH--HhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccc
Q 006659          461 DGLCDLPNKVREVLKL----DQEMKVLAK--QLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLA  534 (636)
Q Consensus       461 ~~l~~l~~~~~~~~~~----~~~~~~~a~--~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~  534 (636)
                      +++.+-|+.++++++.    ... .++++  .+...++++++|.|.++.+|..++.++....++++......||.+.+. 
T Consensus        18 keI~eqP~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~~~~~~~~~~~~-   95 (342)
T 1j5x_A           18 KEITDQKNELKKFFENFVLNLEK-TEIFSEIQKNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKAIPAGEVAFQKI-   95 (342)
T ss_dssp             HHHHHHHHTHHHHHHHTGGGTTC-------C----CCEEEEEESTHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHTTCS-
T ss_pred             HHHHHHHHHHHHHHHhhhcccch-HHHHHHHHhCCCCEEEEEEchHHHHHHHHHHHHHHHhhCCeEEEECchHHHhcCc-
Confidence            3445556666666643    112 44444  356778999999999999999999999887888998887778766544 


Q ss_pred             cccCC-CCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-c---hhhHH-HHHHH
Q 006659          535 LVDEN-LPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-C---LQPVI-NIVPL  608 (636)
Q Consensus       535 ~~~~~-~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-~---~~~~~-~~v~~  608 (636)
                      .++++ +.+|++...|.+ ..+.+.++.++++|.+++.||+..+..+..  .+|..+.+|. ++ .   ...+. .++.+
T Consensus        96 ~~~~~~dlvI~iS~SG~T-~e~l~a~~~ak~~Ga~vIaIT~~~~S~La~--~ad~~l~~~~-~e~~~a~t~s~~~~l~~l  171 (342)
T 1j5x_A           96 PDLEERGLAFLFSRTGNT-TEVLLANDVLKKRNHRTIGITIEEESRLAK--ESDLPLVFPV-REEAIVMTKSFSMILLSL  171 (342)
T ss_dssp             CCCCSSEEEEEECSSSCC-HHHHHHHHHHHHTTEEEEEEESCTTSHHHH--HSSEEEECCC-CCCSSSCCHHHHHHHHHH
T ss_pred             ccCCCCeEEEEEcCCCCC-HHHHHHHHHHHHCCCCEEEEECCCCCHHHH--hcCEEEEcCC-CcceecchHHHHHHHHHH
Confidence            35666 777777766655 456678888999999999999877654321  2567788875 33 1   23333 33345


Q ss_pred             HHHHHHHHH
Q 006659          609 QLLAYHLTV  617 (636)
Q Consensus       609 q~la~~lA~  617 (636)
                      .+++..++.
T Consensus       172 ~~L~~~l~~  180 (342)
T 1j5x_A          172 MFLADKIAG  180 (342)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            666666653

>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*

Probab=97.65  E-value=0.00018  Score=76.02  Aligned_cols=200  Identities=16%  Similarity=0.113  Sum_probs=114.0

Q ss_pred             ccchHHHHHHHcC-CCeEEEEeechhHHHHHHHHHHHHHhc-----CCcEEEe----eccchhcccCCC-CCCcEEEEEc
Q 006659          306 LGGLKDHLKTIRR-SRRIVFIGCGTSYNAALAARPILEELS-----DLPVTME----IASDLVDRQAPI-YREDTAVFVS  374 (636)
Q Consensus       306 ~~~l~~~~~~l~~-~~~I~i~G~G~S~~aa~~~~~~~~~~~-----~~~~~~~----~~~e~~~~~~~~-~~~dlvI~iS  374 (636)
                      .+.++++++.+++ .+.|+++|+|+|+-.+..+...+....     +..+...    ++..+......+ .+++++|++|
T Consensus        62 l~~i~~~a~~vr~~~~~vV~IGIGGS~LGp~~v~eaL~~~~~~~~~~~~~~fv~dnvDp~~i~~~l~~l~~~~Tl~iViS  141 (446)
T 3ff1_A           62 FSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVIS  141 (446)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEECCGGGTHHHHHHHHHHSCSSCCCCSSCEEEEESSSCCHHHHHHHHHHGGGCCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecchhHHHHHHHHHHHcchhhcccCCceEEEEecCCCHHHHHHHHHhcCccceEEEEEc
Confidence            3456777777763 788999999999988888777776532     2333222    222222222223 3688999999


Q ss_pred             CCCCCHHHHHHHHHHHH----c-C-----CeEEEEEcCCCCccccccCe----eEEcCCCCcccccchhhHHHHHHHHHH
Q 006659          375 QSGETADTLQALEYASE----N-G-----ALCVGITNTVGSAIARKTHC----GVHINAGAEIGVASTKAYTSQIVVMAM  440 (636)
Q Consensus       375 ~SG~t~e~i~al~~ak~----~-g-----~~vi~IT~~~~s~La~~ad~----~l~~~~~~e~~~~~t~s~~~~~~~l~l  440 (636)
                      .||.|.||+..++.+|+    + |     ..+|+||+...++|.+.|+-    ++.++..    +...-|..+.+-+   
T Consensus       142 KSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vavT~~~~g~L~~~a~~~G~~~F~~~d~----VGGRySv~SaVGL---  214 (446)
T 3ff1_A          142 KSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDD----VGGRYSVLTAVGL---  214 (446)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHEEEEECSSCSHHHHHHHHHTCEEEECCTT----CCGGGCTTSHHHH---
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCcchhhhHHHHcCCeEEEeccc----cccchhhhhhhHH---
Confidence            99999999999988774    2 4     36899999877888777652    4444331    1122222222222   


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHH-HhchHHHHHHH--H-Hh--cCCCeEEEEeCC-CCHHHHHHHHHHHH
Q 006659          441 LALAIGGDTISTQARREAIIDGLCDLPNKVREV-LKLDQEMKVLA--K-QL--IAEQSLLVFGRG-YNYATALEGALKVK  513 (636)
Q Consensus       441 L~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~a--~-~l--~~~~~~~~lG~G-~~~~~A~e~alKl~  513 (636)
                      +.+.++..      .++++++..+.+.+.+... ++ ++..-.+|  . .+  .+.+...++... .....+....+-.+
T Consensus       215 lp~a~~G~------d~~~lL~GA~~md~~f~~~~~~-~N~~~~~Al~~~~~~~~G~~~~~l~pY~~~L~~f~~w~qQL~~  287 (446)
T 3ff1_A          215 LPIATAGI------NIEAMMIGAAKAREELSSDKLE-ENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFG  287 (446)
T ss_dssp             HHHHHTTC------CHHHHHHHHHHHHHHTCCCCGG-GCHHHHHHHHHHHHHHTTCCEEEEEESSGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCc------cHHHHHHHHHHHHHHhcCCCcc-cCHHHHHHHHHHHHHHCCCCEEEEEeCcHhHHHHHHHHHHhhc
Confidence            22223222      1344444443333332211 11 22222222  1 11  455655665544 44667777888899


Q ss_pred             Hhcccc
Q 006659          514 EVALMH  519 (636)
Q Consensus       514 E~~~~~  519 (636)
                      |..+..
T Consensus       288 ES~GK~  293 (446)
T 3ff1_A          288 ESEGKD  293 (446)
T ss_dssp             HHHCCT
T ss_pred             cccCCC
Confidence            999765

>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}

Probab=97.63  E-value=0.0006  Score=66.94  Aligned_cols=143  Identities=15%  Similarity=0.089  Sum_probs=89.0

Q ss_pred             HHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccc------------ccccccc------ccccccCCCC
Q 006659          480 MKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGIL------------AGEMKHG------PLALVDENLP  541 (636)
Q Consensus       480 ~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~------------~~Ef~HG------p~~~~~~~~~  541 (636)
                      ++.+++.+...++++++|.|.++.+|.+++.++.-....++....            ..|..||      ....+++++.
T Consensus        32 ~~~l~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~~~~~~Dv  111 (243)
T 3cvj_A           32 AHLVSEAVMNGGRFYVFGSGHSHMIAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLHQVTNKDV  111 (243)
T ss_dssp             HHHHHHHHHTTCCEEEEESGGGHHHHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHHHHHTTCCTTCE
T ss_pred             HHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhccccccCcccchhhhccCCchhhhhhhhcccHHHHHHHHhcCCCCCE
Confidence            444555667789999999999999999888776543322221111            1244454      2233678888


Q ss_pred             eEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCC-----------cCCCCCCcceEEEcCCCC--------------
Q 006659          542 ILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDA-----------ASIFPGGSCRVIEVPQVE--------------  596 (636)
Q Consensus       542 vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~-----------~~~~~~~~~~~~~~p~~~--------------  596 (636)
                      +|++...|.+ ..+.++++.++++|.+++.||+....           .+.  ..+|..+.++...              
T Consensus       112 ~I~iS~SG~t-~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La--~~aD~~l~~~~~~~e~~~~~~~~~~~~  188 (243)
T 3cvj_A          112 IMIISNSGRN-TVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLY--EYADVVLDNGAPVGDAGFQIANSEIYS  188 (243)
T ss_dssp             EEEECSSCCS-HHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGG--GGCSEEEECCCCTTSCCEECSSSSCEE
T ss_pred             EEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHH--HhCCEEEECCCCcccceeeccCccccC
Confidence            8888776655 55667889999999999999986322           221  1256777665321              


Q ss_pred             cchhhHHHHHHHHHHHHHHHH---HcCCCCCC
Q 006659          597 DCLQPVINIVPLQLLAYHLTV---LRGYNVDQ  625 (636)
Q Consensus       597 ~~~~~~~~~v~~q~la~~lA~---~~G~~pd~  625 (636)
                      ...+.+..+..++.|...++.   .+|++|..
T Consensus       189 ~~~s~~~~~~il~~L~~~~~~~~~~~~~~~~~  220 (243)
T 3cvj_A          189 GATSDSIGCFLAQALIVETLHLLVQQGFEPPV  220 (243)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCB
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe
Confidence            123334455556666554444   46775543

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3

Probab=97.51  E-value=0.00093  Score=62.60  Aligned_cols=116  Identities=15%  Similarity=0.097  Sum_probs=76.0

Q ss_pred             HHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHH-----hccccccccc--cccc-------------cccccccccC
Q 006659          479 EMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKE-----VALMHSEGIL--AGEM-------------KHGPLALVDE  538 (636)
Q Consensus       479 ~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E-----~~~~~a~~~~--~~Ef-------------~HGp~~~~~~  538 (636)
                      .++.+++.+...++++++|.|.++.+|...+..+.-     ...+++....  ..++             .+--...+++
T Consensus        31 ~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (188)
T 1tk9_A           31 VGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNE  110 (188)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCCC
Confidence            344555567778999999999999999988875532     2233433331  1110             0001123678


Q ss_pred             CCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc
Q 006659          539 NLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED  597 (636)
Q Consensus       539 ~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~  597 (636)
                      ++.+|++...|.+ ..+.+.++.++++|.+++.||+.....+..  .+|..+.+|..+.
T Consensus       111 ~Dvvi~iS~sG~t-~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~--~ad~~l~~~~~~~  166 (188)
T 1tk9_A          111 KDVLIGISTSGKS-PNVLEALKKAKELNMLCLGLSGKGGGMMNK--LCDHNLVVPSDDT  166 (188)
T ss_dssp             TCEEEEECSSSCC-HHHHHHHHHHHHTTCEEEEEEEGGGTTHHH--HCSEEEEESCSCH
T ss_pred             CCEEEEEeCCCCC-HHHHHHHHHHHHCCCEEEEEeCCCCcchHH--cCCEEEEeCCCCH
Confidence            8888888877765 456788899999999999999876543321  2567888886543

>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3

Probab=97.50  E-value=0.0016  Score=66.29  Aligned_cols=141  Identities=13%  Similarity=0.080  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHH-HHHHHHHhcc-------ccccc-------cc-cccccc---ccc--cc
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALE-GALKVKEVAL-------MHSEG-------IL-AGEMKH---GPL--AL  535 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e-~alKl~E~~~-------~~a~~-------~~-~~Ef~H---Gp~--~~  535 (636)
                      ++.++++++.+...++++++|.|.++.+|.. +.-++.-...       +.+.+       .+ .+++.|   ..+  ..
T Consensus        58 ~~~i~~i~~~l~~a~rI~~~G~G~S~~lA~~~a~~~~~~~g~~~~~~~~l~~~g~~a~~~a~e~~ed~~~~~~~~l~~~~  137 (306)
T 1nri_A           58 SLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKAVLNDLQSIH  137 (306)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCEEEEEeccHhHHHHHHHHHhcccccCCCHHHHHHHHhcchHHHhhhhhcccCcHHHHHHHHHhcC
Confidence            3556777888888899999999999999953 4333322211       01111       11 123332   222  13


Q ss_pred             ccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc------h-hhHHHHHHH
Q 006659          536 VDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC------L-QPVINIVPL  608 (636)
Q Consensus       536 ~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~------~-~~~~~~v~~  608 (636)
                      ++++..+|+|...|.+ ..+.+.++.++++|.+++.|++.....+..  .+|..+.+|..++.      + +.......+
T Consensus       138 l~~~DvvI~IS~SG~T-~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~--~AD~~I~~~~g~E~~~~st~~~s~ta~~~vl  214 (306)
T 1nri_A          138 FSKNDVLVGIAASGRT-PYVIAGLQYAKSLGALTISIASNPKSEMAE--IADIAIETIVGPEILTGSSRLKSGTAQKMVL  214 (306)
T ss_dssp             CCTTSEEEEECTTSCC-HHHHHHHHHHHHHTCEEEEEESSTTCHHHH--HSSEEEECCCCSCSSTTCTTTHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCEEEEEECCCCChHHH--hCCEEEEcCCCCccccCcccchhHHHHHHHH
Confidence            6788888888877665 556788899999999999999987654321  24677777743332      1 222344567


Q ss_pred             HHHHHHHHHHcC
Q 006659          609 QLLAYHLTVLRG  620 (636)
Q Consensus       609 q~la~~lA~~~G  620 (636)
                      ++|+..+....|
T Consensus       215 ~~L~~~~~~~~g  226 (306)
T 1nri_A          215 NMLTTASMILLG  226 (306)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcc
Confidence            888888888877

>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}

Probab=97.37  E-value=0.00047  Score=72.62  Aligned_cols=131  Identities=9%  Similarity=0.077  Sum_probs=92.1

Q ss_pred             HHHhhhHHHHHHHHhc-h---HHHHHHH-HHhcCC-CeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccc
Q 006659          461 DGLCDLPNKVREVLKL-D---QEMKVLA-KQLIAE-QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLA  534 (636)
Q Consensus       461 ~~l~~l~~~~~~~~~~-~---~~~~~~a-~~l~~~-~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~  534 (636)
                      +++.+-|+.+++.++. .   ....++. +.+... ++++++|.|.++.+|..++.++....++++..+...++.+.++.
T Consensus        18 kEI~eqP~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~I~i~G~GtS~~~a~~~~~~l~~~~g~~v~~~~~~~~~~~~~~   97 (384)
T 3c3j_A           18 EEIRHQPRAWIRSLTNIDALRSALNNFLEPLLRKENLRIILTGAGTSAFIGDIIAPWLASHTGKNFSAVPTTDLVTNPMD   97 (384)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEEECSTHHHHHHHHHHHHHHHHHCSEEEECCHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHhcCCCEEEEEEehHHHHHHHHHHHHHHHHhCCcEEEeccHHHHhChhh
Confidence            3445556666555542 1   2233343 235666 89999999999999999999998888888888777677777766


Q ss_pred             cc--cCCCCeEEEEeCCcchHHHHHHHHHHHhc--CCeEEEEecCCCCcCCCCCCcc-----eEEEcCC
Q 006659          535 LV--DENLPILVIATRDACFSKQQSVIQQLHAR--KGRLIVMCSKGDAASIFPGGSC-----RVIEVPQ  594 (636)
Q Consensus       535 ~~--~~~~~vi~l~~~~~~~~~~~~~~~~~~~~--g~~v~vi~~~~~~~~~~~~~~~-----~~~~~p~  594 (636)
                      ..  ++++.+|++...|.+ ..+.+.++.++++  |.+++.|++..+..+..  .+|     ..+.+|.
T Consensus        98 ~~~~~~~dlvI~iS~SG~T-~e~l~a~~~ak~~~~ga~~iaIT~~~~S~La~--~ad~~~~~~~l~~~~  163 (384)
T 3c3j_A           98 YLNPAHPLLLISFGRSGNS-PESVAAVELANQFVPECYHLPITCNEAGALYQ--NAINSDNAFALLMPA  163 (384)
T ss_dssp             HCCTTSCEEEEEEESSSCC-HHHHHHHHHHHHHCSSEEEEEEESCTTSHHHH--HHHTCTTBCCEECCG
T ss_pred             hhCCCCCeEEEEEeCCcCC-HHHHHHHHHHHhhCCCCCEEEEECCCCCHHHh--hhccCCcEEEEEecC
Confidence            55  577888888777765 4456778888888  99999999976553321  134     6677773

>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733, cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES; 1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A* 3q88_A*

Probab=96.54  E-value=0.0029  Score=68.29  Aligned_cols=188  Identities=18%  Similarity=0.078  Sum_probs=102.3

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhc--CCcEEEeeccc---hhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHH-
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELS--DLPVTMEIASD---LVDRQAPIY-REDTAVFVSQSGETADTLQALEYASE-  391 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~--~~~~~~~~~~e---~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~-  391 (636)
                      .+.|+++|+|+|+-....+...+....  +..+...+..+   +......++ +.+++|++|.||.|.||+..++.+|+ 
T Consensus       140 i~~VV~IGIGGS~LGp~~v~eaL~~~~~~~~~~~Fv~NvDp~~l~~~L~~l~~~~TLfiViSKSgtT~ET~~n~~~ar~w  219 (543)
T 3ljk_A          140 ITDIVNIGIGGSDLGPKMVVRALQPYHCTDLKVHFVSNVDADSLLQALHVVDPETTLLIIASKSFSTEETLLNSISAREW  219 (543)
T ss_dssp             CCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSHHHHHHHHTTCCGGGEEEEEECTTSCCHHHHHHHHHHHHH
T ss_pred             eeeEEEEecccchHHHHHHHHHhhhhccCCCeEEEEeCCCHHHHHHHHhhCCcccEEEEEecCCCCCHHHHHHHHHHHHH
Confidence            589999999999988888877776543  34444443222   222223343 57899999999999999998887763 


Q ss_pred             ---c-C------CeEEEEEcCCCCcccccc---CeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Q 006659          392 ---N-G------ALCVGITNTVGSAIARKT---HCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREA  458 (636)
Q Consensus       392 ---~-g------~~vi~IT~~~~s~La~~a---d~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~  458 (636)
                         + |      -..|+||.+. +.+.+..   +.++.++..-    ...-|..+.+-+.  +++.++      .+.+++
T Consensus       220 l~~~~g~~~~~~khfvAvTt~~-~~a~~~Gi~~~~~F~~~d~V----GGRySv~SaVGL~--~a~~~G------~d~~~~  286 (543)
T 3ljk_A          220 LLDHYEDEKAVANHFVAISSKL-DKVKEFGIDLEHCYKMWDWV----GGRYSLWSSIGMS--IAFAIG------YDNFEK  286 (543)
T ss_dssp             HHHHHCCGGGGGGTEEEECSCH-HHHHHHTCCGGGEECCCTTS----CGGGCTTSGGGHH--HHHHHC------HHHHHH
T ss_pred             HHHhcCCcccccCeEEEEcCCh-HHHHHcCCCccCEEECCCCC----CCcCcCcchhHHH--HHHHcC------cHHHHH
Confidence               2 2      3588898763 3332221   1235443311    1122222222211  112111      122344


Q ss_pred             HHHHHhhhHHHHHHH-HhchH-HHH----HHHHHhcCCCeEEEEeCCCC-HHHHHHHHHHHHHhcccc
Q 006659          459 IIDGLCDLPNKVREV-LKLDQ-EMK----VLAKQLIAEQSLLVFGRGYN-YATALEGALKVKEVALMH  519 (636)
Q Consensus       459 ~~~~l~~l~~~~~~~-~~~~~-~~~----~~a~~l~~~~~~~~lG~G~~-~~~A~e~alKl~E~~~~~  519 (636)
                      +++....+.+.+... ++.+. ..-    -+...+.+.+...++..... ...+....+-.+|..+..
T Consensus       287 lL~GA~~md~~f~~~~l~~N~p~llAl~~~~~~~~~G~~~~~llpY~~~L~~f~~w~qQL~mES~GK~  354 (543)
T 3ljk_A          287 LLAGAYSVDKHFKETEFSKNIPVIMALLASYYSCTYNSQSQALLPYDERLCYFVDYLQQADMESNGKS  354 (543)
T ss_dssp             HHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHTCCCEEEEEECSGGGTTHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHHhcCCCCeEEEEEChHHHHHHHHHHHHHHHhccCCc
Confidence            444444444443321 11111 111    12233457777777765543 566677778899999864

>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella melitensis BV}

Probab=96.46  E-value=0.0029  Score=68.41  Aligned_cols=188  Identities=15%  Similarity=0.081  Sum_probs=101.3

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEEeeccc---hhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHH--
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASD---LVDRQAPIY-REDTAVFVSQSGETADTLQALEYASE--  391 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~~~~~e---~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~--  391 (636)
                      .+.|+++|+|+|+-....+...+.... +..+...+..+   +......++ +.+++|++|.||.|.||+..++.+|+  
T Consensus       150 i~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~Fv~NvDp~~l~~~L~~l~~~~TLfiViSKSgtT~ET~~n~~~ar~wl  229 (553)
T 4em6_D          150 ITDIVNIGIGGSDLGPVMATLALAPYHDEPRAHFVSNIDGAHIADTLSPLDPASTLIIVASKTFTTIETMTNAQTARKWV  229 (553)
T ss_dssp             CCEEEEECCGGGTHHHHHHHHHTGGGCCSSEEEEECCSSHHHHHHHHTTSCGGGEEEEEECSSSCCHHHHHHHHHHHHHH
T ss_pred             eeeEEEEecccccHHHHHHHHHHhccCCCCeEEEEeCCCHHHHHHHHhhCCcCcEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            689999999999988888877666542 24444433222   222223344 57899999999999999988777663  


Q ss_pred             --c------CCeEEEEEcCCCCcccccc---CeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 006659          392 --N------GALCVGITNTVGSAIARKT---HCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAII  460 (636)
Q Consensus       392 --~------g~~vi~IT~~~~s~La~~a---d~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~  460 (636)
                        +      .-.+|+||.+. +.+.+..   +.++.++..-    ...-|..+.+-+.  +++.++      .+.+++++
T Consensus       230 ~~~~~~~~~~kh~vAvTt~~-~~a~~~Gi~~~~~F~~~d~V----GGRySv~SaVGL~--~a~~~G------~d~~~~lL  296 (553)
T 4em6_D          230 ADTLGEAAVGAHFAAVSTAL-DKVAAFGIPEDRVFGFWDWV----GGRYSVWSAIGLP--VMIAVG------PDNFRKFL  296 (553)
T ss_dssp             HHHHCGGGGGGTEEEECSCH-HHHHHHTCCGGGEECCCTTS----CGGGCTTSGGGHH--HHHHHC------HHHHHHHH
T ss_pred             HHhcCcccccCeEEEEcCCc-HHHHHcCCccccEEecCCCc----CccccccchhhHH--HHHHcC------cHHHHHHH
Confidence              1      24688998753 3333221   1235443321    1122222222211  122221      12244454


Q ss_pred             HHHhhhHHHHHHH-Hhch-HHHHH----HHHHhcCCCeEEEEeCCC-CHHHHHHHHHHHHHhcccc
Q 006659          461 DGLCDLPNKVREV-LKLD-QEMKV----LAKQLIAEQSLLVFGRGY-NYATALEGALKVKEVALMH  519 (636)
Q Consensus       461 ~~l~~l~~~~~~~-~~~~-~~~~~----~a~~l~~~~~~~~lG~G~-~~~~A~e~alKl~E~~~~~  519 (636)
                      +....+.+.+... ++.+ +..-.    +...+.+.+...++.... ....+....+-.+|..+..
T Consensus       297 ~GA~~md~~f~~~~l~~N~p~llAl~~~~~~~~~G~~~~~llpY~~~L~~f~~w~qQL~mES~GK~  362 (553)
T 4em6_D          297 AGAHAMDVHFRDAPLEKNLPVMLGLIGYWHRAICGYGSRAIIPYDQRLSRLPAYLQQLDMESNGKS  362 (553)
T ss_dssp             HHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHTSCCCEEEEEEECGGGTTHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHhhcCChhhCHHHHHHHHHHHHHhcCCCCeEEEEEChHHHHHHHHHHHHHHHhccCCc
Confidence            4444444443321 1111 11111    223335667666666543 4566777778899999864

>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*

Probab=95.83  E-value=0.073  Score=53.72  Aligned_cols=80  Identities=9%  Similarity=-0.042  Sum_probs=64.9

Q ss_pred             CCCeEEEEeCCCCHHHHHHHHHHHHHhc-cccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCC
Q 006659          489 AEQSLLVFGRGYNYATALEGALKVKEVA-LMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKG  567 (636)
Q Consensus       489 ~~~~~~~lG~G~~~~~A~e~alKl~E~~-~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~  567 (636)
                      ..++++++|.|.++.+|..++-.+.... .+++......++       .++++.+|++..+|.+ ..+.+.++.++++|.
T Consensus        36 ~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~dlvI~iS~SG~T-~e~~~a~~~ak~~g~  107 (302)
T 1tzb_A           36 AMPRLYISGMGGSGVVADLIRDFSLTWNWEVEVIAVKDYFL-------KARDGLLIAVSYSGNT-IETLYTVEYAKRRRI  107 (302)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHHHHHHTTCSSEEEEECSSCC-------CCSSSEEEEECSSSCC-HHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEecHHHHHHHHHHHHHHhhcCCceEEEeCCcCC-------CCCCCEEEEEeCCCCC-HHHHHHHHHHHHCCC
Confidence            5789999999999999999988887666 777777666555       2778888888776665 455678888999999


Q ss_pred             eEEEEecCC
Q 006659          568 RLIVMCSKG  576 (636)
Q Consensus       568 ~v~vi~~~~  576 (636)
                      +++.|++..
T Consensus       108 ~~iaIT~~~  116 (302)
T 1tzb_A          108 PAVAITTGG  116 (302)
T ss_dssp             CEEEEESST
T ss_pred             eEEEECCCc
Confidence            999999977

>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: G6Q; 2.10A {Toxoplasma gondii}

Probab=95.69  E-value=0.012  Score=63.77  Aligned_cols=189  Identities=14%  Similarity=0.104  Sum_probs=100.2

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHh-------cCCcEEEeeccc---hhcccCCCC-CCcEEEEEcCCCCCHHHHHHHH
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEEL-------SDLPVTMEIASD---LVDRQAPIY-REDTAVFVSQSGETADTLQALE  387 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~-------~~~~~~~~~~~e---~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~  387 (636)
                      .+.|+.+|+|+|+-....+...+...       .+..+...+..+   +......++ +++++|++|.||.|.||+..++
T Consensus       151 i~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~~~~~~~FvsNvDp~~l~~~L~~L~~~~TlfiViSKSgtT~ET~~n~~  230 (567)
T 3ujh_A          151 LVNVISIGIGGSYLGTEFVHLALAAEGYAAEKAHGRQIHFLANVDPVDVWLAERGFDPEETLVVVISKTFTTAETMMNAR  230 (567)
T ss_dssp             CCEEEEECCGGGTHHHHHHHHHHHTCHHHHHHTTTCEEEEECCSSHHHHHHHHTTCCGGGEEEEEECSSSCCHHHHHHHH
T ss_pred             ceeEEEEecccchHHHHHHHHHhccccccccccCCCeEEEEeCCCHHHHHHHHhhCCcccEEEEEEeCCCCCHHHHHHHH
Confidence            58999999999998888877766543       244444443222   222223344 5789999999999999999888


Q ss_pred             HHHH----c---C-----CeEEEEEcCCCCccccc---cCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659          388 YASE----N---G-----ALCVGITNTVGSAIARK---THCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIST  452 (636)
Q Consensus       388 ~ak~----~---g-----~~vi~IT~~~~s~La~~---ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~  452 (636)
                      .+|+    +   |     -.+|+||.+. ....+.   .+..+.++.   . +...-|..+.+-++- +++.++      
T Consensus       231 ~~r~wl~~~~~~g~~~~~kh~vAvT~~~-~~~~~fgi~~~n~F~~~D---~-VGGRySvlSaVGLLP-iAla~G------  298 (567)
T 3ujh_A          231 SVRDWYLHHYKGDERALGAHFCAVSTNL-DGTSKFGIQSDRVFGFWD---W-VGGRYSVTSAVGILP-LALQYG------  298 (567)
T ss_dssp             HHHHHHHHHTTTCGGGSGGGEEEECSCH-HHHHHHTCCGGGBCCCCT---T-SCGGGCTTSHHHHHH-HHHHHC------
T ss_pred             HHHHHHHHhccccchhhcCeEEEECCCh-HHHHHcCCChhceecCcc---C-CCCcchhhhhhhHHH-HHHHcC------
Confidence            7773    2   1     2588998753 222111   011233322   1 112223322222111 111111      


Q ss_pred             HHHHHHHHHHHhhhHHHHHHH-Hhch-HHHHHHH----HHhcCCCeEEEEeCCCC-HHHHHHHHHHHHHhcccc
Q 006659          453 QARREAIIDGLCDLPNKVREV-LKLD-QEMKVLA----KQLIAEQSLLVFGRGYN-YATALEGALKVKEVALMH  519 (636)
Q Consensus       453 ~~~~~~~~~~l~~l~~~~~~~-~~~~-~~~~~~a----~~l~~~~~~~~lG~G~~-~~~A~e~alKl~E~~~~~  519 (636)
                      .+.++++++....+.+.+... ++.+ +..-.++    ..+.+.+...++..... ...+....+-.+|..+..
T Consensus       299 ~d~~~~lL~GA~~md~~f~~~~l~~N~p~llAl~~~w~~~~~G~~~~~llpY~~~L~~f~~w~qQL~mES~GK~  372 (567)
T 3ujh_A          299 YDVAQEFLNGAHAMDVHFKTAELADNLPMLMGLISVWNATFFGYSNVAVLPYAQALLRFPAHIQQLTMESNGKR  372 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHTSCCCEEEEEESCGGGTTHHHHHHHHHHHHHCCS
T ss_pred             chHHHHHHHHHHHHHHHhhcCChhhCHHHHHHHHHHHHHHcCCCCeEEEecccHHHHHHHHHHHHHHHhccCCc
Confidence            122344444444444444321 1111 1111222    22356777777766543 556667777899999864

>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi glycolysis, structural genomics, center for STRU genomics of infectious diseases; HET: PG4; 1.50A {Vibrio cholerae} PDB: 3nbu_A

Probab=95.52  E-value=0.013  Score=63.55  Aligned_cols=188  Identities=14%  Similarity=0.059  Sum_probs=101.6

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhc-CCcEEEeeccc---hhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHH--
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELS-DLPVTMEIASD---LVDRQAPIY-REDTAVFVSQSGETADTLQALEYASE--  391 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~-~~~~~~~~~~e---~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~--  391 (636)
                      .+.|+++|+|+|+-....+...+.... +..+...+..+   +......++ +.+++|++|.||.|.||+..++.+|+  
T Consensus       172 i~~VV~IGIGGS~LGp~~v~eAL~~~~~~~~l~FvsNvDp~~l~~~L~~Ld~~~TLfiViSKSgtT~ET~~n~~~ar~wl  251 (574)
T 3hjb_A          172 ITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDGTHMAETLKNVDPETTLFLVASKTFTTQETMTNAHTARDWF  251 (574)
T ss_dssp             CCEEEEECCGGGTHHHHHHHHHTGGGCCSCEEEEECCSSHHHHHHHHTTCCGGGEEEEEECSSSCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecccchHHHHHHHHHhhcccCCCeEEEEeCCCHHHHHHHHhcCCcccEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999988888877776543 23444333222   222223344 57899999999999999987776553  


Q ss_pred             --c-C------CeEEEEEcCCCCcccccc---CeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 006659          392 --N-G------ALCVGITNTVGSAIARKT---HCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAI  459 (636)
Q Consensus       392 --~-g------~~vi~IT~~~~s~La~~a---d~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~  459 (636)
                        + |      -..|+||.+. +.+.+..   +..+.++..    +...-|..+.+-++-  ++.++      .+.++++
T Consensus       252 ~~~~~~~~~~~khfVavTt~~-~~~~~fgi~~~~~F~~~D~----VGGRySvlSaVGL~p--a~~~G------~d~~~~l  318 (574)
T 3hjb_A          252 LKAAGDEAHVAKHFAALSTNG-KAVAEFGIDTDNMFEFWDW----VGGRYSLWSAIGLSI--ILSIG------YDNFVEL  318 (574)
T ss_dssp             HHHHCSGGGGGGTEEEESSCH-HHHHHHTCCGGGEECCCTT----SCGGGCTTTGGGHHH--HHHHC------HHHHHHH
T ss_pred             HHhcCCcchhcCEEEEEcCCh-HHHHHcCCchhcEEeCCCC----CCcchhhcchhHHHH--HHHcC------hHHHHHH
Confidence              2 2      2478888753 3332221   124444331    112222222222211  12221      1234455


Q ss_pred             HHHHhhhHHHHHHH-HhchH-HHHH----HHHHhcCCCeEEEEeCCCC-HHHHHHHHHHHHHhcccc
Q 006659          460 IDGLCDLPNKVREV-LKLDQ-EMKV----LAKQLIAEQSLLVFGRGYN-YATALEGALKVKEVALMH  519 (636)
Q Consensus       460 ~~~l~~l~~~~~~~-~~~~~-~~~~----~a~~l~~~~~~~~lG~G~~-~~~A~e~alKl~E~~~~~  519 (636)
                      ++....+.+.+... ++.+. ..-.    +...+.+.+...++..... ...+....+-.+|..+..
T Consensus       319 L~GA~~md~hf~~~~l~~N~p~llAll~iwy~~~~G~~~~~llpY~~~L~~f~~w~qQL~mES~GK~  385 (574)
T 3hjb_A          319 LAGAHEMDQHFVNTPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRFAAYFQQGNMESNGKY  385 (574)
T ss_dssp             HHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHTSCCCEEEEEESCGGGTTHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhhcCCcccCHHHHHHHHHHHHHhcCCCCeEEEEECcHHHHHHHHHHHHHHHhccCCc
Confidence            55544444444331 11111 1111    2223346777777766543 566677778899999865

>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural genomics consortium, SGC; 1.92A {Plasmodium falciparum} PDB: 3pr3_A

Probab=95.52  E-value=0.014  Score=63.62  Aligned_cols=188  Identities=13%  Similarity=0.134  Sum_probs=100.8

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhc-------CC-----------------cEEEeec---cchhcccCCCC-CCcEE
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELS-------DL-----------------PVTMEIA---SDLVDRQAPIY-REDTA  370 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~-------~~-----------------~~~~~~~---~e~~~~~~~~~-~~dlv  370 (636)
                      .+.|+.+|.|+|+-...++...+....       +.                 .+...+.   .++......++ +.+++
T Consensus       166 ~~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FvsNvDp~~l~~~L~~Ld~~~TLf  245 (597)
T 3qki_A          166 FKNVICIGIGGSYLGTEFVYEAMKYYYYNMELNKNEKDQVNNFNNNYDQDNVFNVRFLANVDPNDVNRAIQNLDQYDTLV  245 (597)
T ss_dssp             CCEEEEECCGGGTHHHHHHHHHHHHHHHHHTTSCCCTTCCCCTTCCCSSTTCCEEEEECCSSHHHHHHHHTTCCGGGEEE
T ss_pred             ceeEEEEecccccHHHHHHHHHhccchhcccccccccccccccccccccccCceEEEEeCCCHHHHHHHHhhCCcccEEE
Confidence            589999999999887777766665431       11                 1333322   22222223344 57899


Q ss_pred             EEEcCCCCCHHHHHHHHHHHH----c-C------CeEEEEEcCCCCccccc----cCeeEEcCCCCcccccchhhHHHHH
Q 006659          371 VFVSQSGETADTLQALEYASE----N-G------ALCVGITNTVGSAIARK----THCGVHINAGAEIGVASTKAYTSQI  435 (636)
Q Consensus       371 I~iS~SG~t~e~i~al~~ak~----~-g------~~vi~IT~~~~s~La~~----ad~~l~~~~~~e~~~~~t~s~~~~~  435 (636)
                      |++|-||.|.||+..++.+|+    + |      -.+|+||.+.  .+++.    .+.++.++..    +...-|..+.+
T Consensus       246 iViSKSgtT~ET~~n~~~~r~wl~~~~g~~~~~~kh~vAvT~~~--~~a~~fGi~~~n~F~~~d~----VGGRySvlSaV  319 (597)
T 3qki_A          246 IIISKTFTTAETMLNARSIKKWLSLKIKDDENLSKHMVAVSTNL--KLTDEFGISRDNVFEFWDW----VGGRFSVTSSV  319 (597)
T ss_dssp             EEECSSSCCHHHHHHHHHHHHHHTTTCCSHHHHGGGEEEECSCH--HHHHHHTCCGGGEECCCTT----SCGGGCTTSHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHhcCCcccccCeEEEECCCh--HHHHHcCCChhcEecCCcc----cCccccccchh
Confidence            999999999999998888775    2 3      2588999753  22221    1124444331    11222222222


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHH-Hhch-HHHHHH----HHHhcCCCeEEEEeCCCC-HHHHHHH
Q 006659          436 VVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREV-LKLD-QEMKVL----AKQLIAEQSLLVFGRGYN-YATALEG  508 (636)
Q Consensus       436 ~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~-~~~~~~----a~~l~~~~~~~~lG~G~~-~~~A~e~  508 (636)
                      -++- +++.++      .+.++++++....+.+.+... ++.+ +..-.+    ...+.+.+...++..... ...+...
T Consensus       320 GLLP-iAla~G------~d~~~~lL~GA~~md~hf~~~~l~~N~p~llAl~~~~~~~~~G~~~~~llpY~~~L~~f~~w~  392 (597)
T 3qki_A          320 GILP-LSIAFG------YKNMRNFLNGCHDMDEHFLHADLKENIPVLLALTSFYNSHFFDYKNVAILPYFQNLLKFSAHI  392 (597)
T ss_dssp             HHHH-HHHHHC------HHHHHHHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHCCCEEEEEESCGGGTTHHHHH
T ss_pred             hHHH-HHHHcC------hHHHHHHHHhHHHHHHHhhCCChhhCHHHHHHHHHHHHHhcCCCCeEEEeeCcHHHHHHHHHH
Confidence            2111 122111      122444555444444444331 1111 111111    222357777777765543 5666777


Q ss_pred             HHHHHHhcccc
Q 006659          509 ALKVKEVALMH  519 (636)
Q Consensus       509 alKl~E~~~~~  519 (636)
                      .+-.+|..+..
T Consensus       393 qQL~mES~GK~  403 (597)
T 3qki_A          393 QQLSMESNGKS  403 (597)
T ss_dssp             HHHHHHHHCCS
T ss_pred             HHHHHhccCcc
Confidence            78899999864

>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}

Probab=92.93  E-value=0.36  Score=43.94  Aligned_cols=87  Identities=9%  Similarity=0.040  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHH
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQS  557 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~  557 (636)
                      +.++-+|+.+.+...+++.|.|..-+++.|.---   .-+++...-- .+ .|    .++++..++++.+.+. .....+
T Consensus        26 ~AA~llaqai~~~g~IyvfG~Ghs~~~~~e~~~~---~e~l~~~~~~-~~-~~----~i~~~D~vii~S~Sg~-n~~~ie   95 (170)
T 3jx9_A           26 DVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDG---PDQMKRVTKI-KD-HK----TLHAVDRVLIFTPDTE-RSDLLA   95 (170)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECGGGGGGTHHHHTS---TTCCTTEEEC-CT-TC----CCCTTCEEEEEESCSC-CHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCcHHHHHHHHHcc---cCCccchhhh-hh-cC----CCCCCCEEEEEeCCCC-CHHHHH
Confidence            3345566667788999999999998888763111   1111111100 00 11    4677888888887654 455677


Q ss_pred             HHHHHHhcCCeEEEEec
Q 006659          558 VIQQLHARKGRLIVMCS  574 (636)
Q Consensus       558 ~~~~~~~~g~~v~vi~~  574 (636)
                      ++..++++|.+++.|++
T Consensus        96 ~A~~ake~G~~vIaITs  112 (170)
T 3jx9_A           96 SLARYDAWHTPYSIITL  112 (170)
T ss_dssp             HHHHHHHHTCCEEEEES
T ss_pred             HHHHHHHCCCcEEEEeC
Confidence            88899999999999999

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*

Probab=92.14  E-value=8  Score=43.63  Aligned_cols=125  Identities=13%  Similarity=0.181  Sum_probs=69.2

Q ss_pred             CCCCcEEEEEcCCC--CCHHHHHHHHHHHHc--CCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHH
Q 006659          364 IYREDTAVFVSQSG--ETADTLQALEYASEN--GALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMA  439 (636)
Q Consensus       364 ~~~~dlvI~iS~SG--~t~e~i~al~~ak~~--g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~  439 (636)
                      +..-|++|++...-  ..+.....+..++++  |+++|.|-.. .++.++.||..|.+..|.+.       .    +++.
T Consensus       164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~-~t~ta~~Ad~~l~irPGtD~-------a----l~~a  231 (723)
T 2nap_A          164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPR-RTNTSRIADMHVAFRPGTDL-------A----FMHS  231 (723)
T ss_dssp             GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSB-CCGGGGGCSEEECCCTTTHH-------H----HHHH
T ss_pred             HhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCc-CCchhhhhCeeeecCCCcHH-------H----HHHH
Confidence            34566777764321  223444566778887  9999999776 77888999998877554332       1    1111


Q ss_pred             HHHHHHhcCCCCcHHHH----------------HHHHHHHhhh-HHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCC
Q 006659          440 MLALAIGGDTISTQARR----------------EAIIDGLCDL-PNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGY  500 (636)
Q Consensus       440 lL~~~~~~~~~~~~~~~----------------~~~~~~l~~l-~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~  500 (636)
                      ++-..+... ..+.+.+                +++.+.+... |+.+.++... .+.++++|+.+... ..+++.|.|.
T Consensus       232 l~~~ii~~~-l~D~~fl~~~tn~~~g~~~~~gf~~l~~~~~~~tpe~~a~itGv~~~~i~~~A~~~a~a~~~~i~~g~g~  310 (723)
T 2nap_A          232 MAWVIINEE-LDNPRFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSLWCMGI  310 (723)
T ss_dssp             HHHHHHHTT-CSCHHHHHHHEEEECTTSCEECHHHHHHHHGGGCHHHHHHHHTSCHHHHHHHHHHHHHSSSEEEEECTTT
T ss_pred             HHHHHHHcC-CccHHHHHHhhccccccccCcHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEecccc
Confidence            222222221 1122222                2223333322 4444443333 56788899888654 4577778886


Q ss_pred             C
Q 006659          501 N  501 (636)
Q Consensus       501 ~  501 (636)
                      .
T Consensus       311 ~  311 (723)
T 2nap_A          311 N  311 (723)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*

Probab=90.93  E-value=3.7  Score=46.40  Aligned_cols=139  Identities=14%  Similarity=0.157  Sum_probs=73.7

Q ss_pred             CCCcEEEEEcCC--CCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHH
Q 006659          365 YREDTAVFVSQS--GETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLA  442 (636)
Q Consensus       365 ~~~dlvI~iS~S--G~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~  442 (636)
                      ..-|++|++...  ...+.....+..++++|+++|.|-.. .++.++.||..|.+..|.+.       .    +++.++-
T Consensus       165 ~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr-~t~ta~~Ad~~l~irPGtD~-------a----L~~al~~  232 (715)
T 2iv2_X          165 DNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPR-KIETARIADMHIALKNGSNI-------A----LLNAMGH  232 (715)
T ss_dssp             GGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSS-CCHHHHTCSEEECCCTTCHH-------H----HHHHHHH
T ss_pred             hcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCC-CCchhHhhCEEeccCCCcHH-------H----HHHHHHH
Confidence            345677776432  12344556778889999999999765 67888999998877554332       1    1112222


Q ss_pred             HHHhcCCCCcHHHHHHH-------HHHHhh-hHHHHHHHHhc-hHHHHHHHHHhcC-CCeEEEEeCCCCH---HH-HHHH
Q 006659          443 LAIGGDTISTQARREAI-------IDGLCD-LPNKVREVLKL-DQEMKVLAKQLIA-EQSLLVFGRGYNY---AT-ALEG  508 (636)
Q Consensus       443 ~~~~~~~~~~~~~~~~~-------~~~l~~-l~~~~~~~~~~-~~~~~~~a~~l~~-~~~~~~lG~G~~~---~~-A~e~  508 (636)
                      ..+.. ...+.+.+++.       .+.+.. -|+.+.+..-. .+.++++|+.+.. .+.+++.|.|...   |. +..+
T Consensus       233 ~ii~~-~l~D~~fl~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~lA~~~a~a~~~~i~~g~g~~~~~~g~~~~~a  311 (715)
T 2iv2_X          233 VIIEE-NLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRS  311 (715)
T ss_dssp             HHHHT-TCSCHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHHSSSEEEEEETTGGGSSSHHHHHHH
T ss_pred             HHHHC-CCcCHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEEcccccccccHHHHHHH
Confidence            22222 11222222222       222211 12222222222 4568888988864 4566777887442   33 3344


Q ss_pred             HHHHHHhc
Q 006659          509 ALKVKEVA  516 (636)
Q Consensus       509 alKl~E~~  516 (636)
                      ...|.-++
T Consensus       312 ~~~L~~l~  319 (715)
T 2iv2_X          312 LTSLAMLT  319 (715)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            44555554

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}

Probab=86.65  E-value=2.1  Score=48.52  Aligned_cols=124  Identities=12%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             CCCCcEEEEEc-CCCCC-H-HHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHH
Q 006659          364 IYREDTAVFVS-QSGET-A-DTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAM  440 (636)
Q Consensus       364 ~~~~dlvI~iS-~SG~t-~-e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~l  440 (636)
                      +..-|++|++. ....+ + -....++.++++|+++|.|-.. .+..++.||..|.+..|.+.           .+++.+
T Consensus       158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr-~t~ta~~Ad~~l~irPGtD~-----------al~~a~  225 (727)
T 2e7z_A          158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPR-RTKVAEMADIWLPLRYGTDA-----------ALFLGM  225 (727)
T ss_dssp             TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSS-CCHHHHHCSEEECCCTTCHH-----------HHHHHH
T ss_pred             cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCC-CCcchhhcceeecCCCCcHH-----------HHHHHH
Confidence            44556666664 33332 3 5567788889999999999876 67888899998877554332           111222


Q ss_pred             HHHHHhcCCCCcHHHH-------HHHHHHHhh-hHHHHHHHHhc-hHHHHHHHHHhcCC-CeEEEEeCCC
Q 006659          441 LALAIGGDTISTQARR-------EAIIDGLCD-LPNKVREVLKL-DQEMKVLAKQLIAE-QSLLVFGRGY  500 (636)
Q Consensus       441 L~~~~~~~~~~~~~~~-------~~~~~~l~~-l~~~~~~~~~~-~~~~~~~a~~l~~~-~~~~~lG~G~  500 (636)
                      +-..+... ..+.+.+       +++.+.+.. -|+.+.+.... .+.++++|+.+... +.+++.|.|.
T Consensus       226 ~~~ii~~~-l~d~~fv~~~t~gf~~l~~~v~~~tpe~~a~itGv~~~~I~~~A~~~a~a~~~~i~~g~g~  294 (727)
T 2e7z_A          226 INVIINEQ-LYDKEFVENWCVGFEELKERVQEYPLDKVAEITGCDAGEIRKAAVMFATESPASIPWAVST  294 (727)
T ss_dssp             HHHHHHTT-CSCHHHHHHHEECHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHSSSEECCCCSGG
T ss_pred             HHHHHHCC-cccHHHHHHHhHHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHhCCCeEEEeCchh
Confidence            22222222 1222222       222233322 23444443333 56788899888654 4566667764

>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}

Probab=86.19  E-value=1.5  Score=46.46  Aligned_cols=98  Identities=9%  Similarity=0.100  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhc-----------cccccccc--cccccccccccccCCCCeEE
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVA-----------LMHSEGIL--AGEMKHGPLALVDENLPILV  544 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~-----------~~~a~~~~--~~Ef~HGp~~~~~~~~~vi~  544 (636)
                      +.++++++.+...++++++|-|-++-.++.....+.-..           .++.....  .+++.+-....+++.+.+|+
T Consensus        66 ~~i~~~a~~i~~~~~Vv~IGIGGS~LG~~~~~~aL~~~~~~~~~~~~~~~~~~v~~~~nvdp~~~~~~l~~L~~~~TlvI  145 (460)
T 2q8n_A           66 DSVKSLEDWIINFDTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVDPDLMSSVLDRIDPKTTLFN  145 (460)
T ss_dssp             HHHHTTHHHHTTCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSCTTTTTTCCEEEEECSCCHHHHHHHHTTCCGGGEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHhhhhcccccccccCCcceEEecCCCHHHHHHHHhcCCCCCEEEE
Confidence            556677777778899999999988888877766665321           22333332  55666655666766555555


Q ss_pred             EEe-CCcchHHHHHHHHHHHhc-----C---CeEEEEecCC
Q 006659          545 IAT-RDACFSKQQSVIQQLHAR-----K---GRLIVMCSKG  576 (636)
Q Consensus       545 l~~-~~~~~~~~~~~~~~~~~~-----g---~~v~vi~~~~  576 (636)
                      +.+ .+.+.|-+ ...+.+++.     |   .++++||+..
T Consensus       146 viSKSGtT~ET~-~~~~~ar~~l~~~~G~~~~~~VAvT~~~  185 (460)
T 2q8n_A          146 VISKSGSTAEVM-ATYSIARGILEAYGLDPREHMLITTDPE  185 (460)
T ss_dssp             EECSSSCCHHHH-HHHHHHHHHHHHTTCCGGGTEEEEECSS
T ss_pred             EEcCCCCCHHHH-HHHHHHHHHHHHhcCCccCeEEEEeCCC
Confidence            554 45555533 333333333     5   7899999873

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1

Probab=85.40  E-value=8.3  Score=45.22  Aligned_cols=57  Identities=11%  Similarity=0.166  Sum_probs=38.5

Q ss_pred             CCCcEEEEEcCCC--CCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659          365 YREDTAVFVSQSG--ETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE  422 (636)
Q Consensus       365 ~~~dlvI~iS~SG--~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e  422 (636)
                      ..-|++|++...-  ..+.....+..|+++|+++|+|-.. -+..++.||..|.+..|.+
T Consensus       183 ~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr-~t~ta~~AD~~l~irPGTD  241 (977)
T 1h0h_A          183 KNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPR-YTRTSTKCDLYAPLRSGSD  241 (977)
T ss_dssp             GGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSS-CCTTGGGCSEEECCCTTCH
T ss_pred             hhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCC-CCchhHHhCeeeccCCCch
Confidence            3456777764321  1122345567788999999999876 6778899999887765443

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=84.11  E-value=15  Score=36.24  Aligned_cols=96  Identities=16%  Similarity=0.100  Sum_probs=56.8

Q ss_pred             HHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE--eeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659          315 TIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM--EIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASE  391 (636)
Q Consensus       315 ~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~--~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~  391 (636)
                      .+.+.++|+|+|.....  ......+..+. +.....  ..+.-+. ........-|++|++...-+    -.++++|+.
T Consensus        67 ~i~~~~~ILfVgTk~~a--q~~V~k~A~~~-g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e----~~AI~EA~~  139 (295)
T 2zkq_b           67 AIENPADVSVISSRNTG--QRAVLKFAAAT-GATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD----HQPLTEASY  139 (295)
T ss_dssp             HSSCGGGEEEEECSHHH--HHHHHHHHHHH-CCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTT----HHHHHHHHH
T ss_pred             HHhCCCeEEEEeCcHHH--HHHHHHHHHHh-CCceecceEecccccCcccccccCCCeEEEeCCCcc----hhHHHHHHH
Confidence            44567889999986542  23344444443 322111  1111111 11122456788888764332    478889999


Q ss_pred             cCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659          392 NGALCVGITNTVGSAIARKTHCGVHINA  419 (636)
Q Consensus       392 ~g~~vi~IT~~~~s~La~~ad~~l~~~~  419 (636)
                      .|++||+|.+. ++++ ...|+.|+.+.
T Consensus       140 lgIPvIalvDT-n~dp-~~VDy~IP~Nd  165 (295)
T 2zkq_b          140 VNLPTIALCNT-DSPL-RYVDIAIPCNN  165 (295)
T ss_dssp             HTCCEEEEECT-TCCC-TTCSEEEESCS
T ss_pred             hCCCEEEEecC-CCCc-ccCCEEEeCCC
Confidence            99999999987 5555 46888886643

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A

Probab=83.94  E-value=9.7  Score=35.55  Aligned_cols=93  Identities=11%  Similarity=0.080  Sum_probs=55.4

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE--eeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCC
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELSDLPVTM--EIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASENGA  394 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~--~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~  394 (636)
                      +.++|.|+|.....  ......+..+. +.....  ..+.-+. .......+.|++|++...-    =-.++++|+..|+
T Consensus        67 ~~~~iLfVgTk~~~--~~~V~~~A~~~-g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~----e~~ai~EA~~l~I  139 (208)
T 1vi6_A           67 EPSKILLVAARQYA--HKPVQMFSKVV-GSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAI----DKQAVSEATAVGI  139 (208)
T ss_dssp             CGGGEEEEECSGGG--HHHHHHHHHHH-CCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTT----THHHHHHHHHTTC
T ss_pred             CCCEEEEEeCCHHH--HHHHHHHHHHh-CCeeecCEECCCcccChhhHhhCCCCEEEEECCCc----chhHHHHHHHhCC
Confidence            56899999986553  23334444443 322211  1122221 1112234677888876433    2468889999999


Q ss_pred             eEEEEEcCCCCccccccCeeEEcCC
Q 006659          395 LCVGITNTVGSAIARKTHCGVHINA  419 (636)
Q Consensus       395 ~vi~IT~~~~s~La~~ad~~l~~~~  419 (636)
                      +||+|.+. +++.. ..|+.|+.+.
T Consensus       140 PvIalvDT-n~~p~-~Vd~~IP~Nd  162 (208)
T 1vi6_A          140 PVVALCDS-NNSSA-DVDLVIPTNN  162 (208)
T ss_dssp             CEEEEECT-TCCCT-TCSEEEESCC
T ss_pred             CEEEEeCC-CCCcc-ccCEEEeCCC
Confidence            99999987 55554 6788886643

>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}

Probab=83.21  E-value=9.5  Score=36.67  Aligned_cols=96  Identities=17%  Similarity=0.132  Sum_probs=56.5

Q ss_pred             HcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEE-Eeeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcC
Q 006659          316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVT-MEIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASENG  393 (636)
Q Consensus       316 l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~-~~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g  393 (636)
                      +.+.++|+|+|.....  ......+..+.+...+. -..+.-+. ........-|++|++...-    --.++++|+..|
T Consensus       101 ~~~~~~iLfVgTk~~a--q~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~----e~~AI~EA~~lg  174 (253)
T 3bch_A          101 IENPADVSVISSRNTG--QRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRA----DHQPLTEASYVN  174 (253)
T ss_dssp             CSSGGGEEEEECSHHH--HHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTT----THHHHHHHHHTT
T ss_pred             HhCCCeEEEEeCCHHH--HHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCc----cchHHHHHHHhC
Confidence            3566789999987543  23344444443322211 01122221 1112235678888875433    247888999999


Q ss_pred             CeEEEEEcCCCCccccccCeeEEcCC
Q 006659          394 ALCVGITNTVGSAIARKTHCGVHINA  419 (636)
Q Consensus       394 ~~vi~IT~~~~s~La~~ad~~l~~~~  419 (636)
                      ++||+|.+. ++++ ...|+.|+.+.
T Consensus       175 IPvIalvDT-n~dp-~~VDy~IP~Nd  198 (253)
T 3bch_A          175 LPTIALCNT-DSPL-RYVDIAIPCNN  198 (253)
T ss_dssp             CCEEEEECT-TCCC-TTCSEEEESCC
T ss_pred             CCEEEEEcC-CCCc-ccCceEeecCC
Confidence            999999987 5555 46888886643

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=82.70  E-value=7.5  Score=38.21  Aligned_cols=96  Identities=9%  Similarity=0.085  Sum_probs=56.9

Q ss_pred             HHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE--eeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659          315 TIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM--EIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASE  391 (636)
Q Consensus       315 ~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~--~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~  391 (636)
                      .+.+.++|+|+|.....  ......+..+. +.....  ..+..|. ........-|++|++...-    --.++++|..
T Consensus        71 ~i~~~~~ILfVgTk~~a--q~aV~k~A~~t-G~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~----d~qAI~EA~~  143 (305)
T 3iz6_A           71 AIENPQDIIVQSARPYG--QRAVLKFAQYT-GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT----DHQPIKESAL  143 (305)
T ss_dssp             HTTSSCCEEEECCSHHH--HHHHHHHHHHH-TCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTT----THHHHHHHHH
T ss_pred             HHhCCCeEEEEeCcHHH--HHHHHHHHHHh-CCccccCcccCCcccCcccccccCCceeEEeCccc----chHHHHHHHH
Confidence            34567789999887542  23333333343 322111  1122221 1112245678888886433    3577889999


Q ss_pred             cCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659          392 NGALCVGITNTVGSAIARKTHCGVHINA  419 (636)
Q Consensus       392 ~g~~vi~IT~~~~s~La~~ad~~l~~~~  419 (636)
                      .|++||+|.++ ++++. +.|+.|..+.
T Consensus       144 lnIPtIALvDT-nsdp~-~VDy~IP~ND  169 (305)
T 3iz6_A          144 GNIPTIAFCDT-DSPMR-YVDIGIPANN  169 (305)
T ss_dssp             HTCCEEEEECT-TSCGG-GCSEEEESCC
T ss_pred             cCCCEEEEEcC-CCCcc-ccceEEeCCC
Confidence            99999999987 55554 4788886644

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B

Probab=81.71  E-value=11  Score=36.09  Aligned_cols=94  Identities=12%  Similarity=0.038  Sum_probs=56.1

Q ss_pred             cCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE--eeccchh-cccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcC
Q 006659          317 RRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM--EIASDLV-DRQAPIYREDTAVFVSQSGETADTLQALEYASENG  393 (636)
Q Consensus       317 ~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~--~~~~e~~-~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g  393 (636)
                      .+..+|.|+|.....  ......+..+ .+.....  ..+.-+. ........-|++|++...-+    -.+++.|...|
T Consensus        68 ~~~~~vlfVgTk~~~--q~~V~k~A~~-~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d----~~ai~EA~~l~  140 (252)
T 3u5c_A           68 PNPEDVVAISSRTFG--QRAVLKFAAH-TGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSD----AQAIKEASYVN  140 (252)
T ss_dssp             SSGGGEEEEECSHHH--HHHHHHHHHH-SSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTT----HHHHHHHHTTT
T ss_pred             hcCCEEEEEeCCcHH--HHHHHHHHHH-hCCceecCcccCCcccChhhhhccCCceEEEeCCccc----hHHHHHHHHcC
Confidence            456789999987542  2333343444 3322211  1122221 11123456788888864433    57888999999


Q ss_pred             CeEEEEEcCCCCccccccCeeEEcCC
Q 006659          394 ALCVGITNTVGSAIARKTHCGVHINA  419 (636)
Q Consensus       394 ~~vi~IT~~~~s~La~~ad~~l~~~~  419 (636)
                      ++||+|.+. ++++. ..|+.|+.+.
T Consensus       141 IP~Ial~DT-n~~p~-~VD~~IP~Nd  164 (252)
T 3u5c_A          141 IPVIALTDL-DSPSE-FVDVAIPCNN  164 (252)
T ss_dssp             CCEEEEECT-TCCCT-TCSSEEECCT
T ss_pred             CCEEEEEcC-CCCcc-cCCEEEeCCC
Confidence            999999987 55554 5788887644

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B

Probab=80.07  E-value=4.4  Score=38.83  Aligned_cols=94  Identities=10%  Similarity=0.047  Sum_probs=54.3

Q ss_pred             HcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcE-E-Eeeccchhc-ccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHc
Q 006659          316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPV-T-MEIASDLVD-RQAPIYREDTAVFVSQSGETADTLQALEYASEN  392 (636)
Q Consensus       316 l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~-~-~~~~~e~~~-~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~  392 (636)
                      +.+.++|+|+|.....  ......+..+.+...+ . -..+.-+.- .......-|++|++...    .--.++++|+..
T Consensus        63 i~~~~~iLfVgtk~~~--~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~----~e~~ai~EA~~l  136 (241)
T 2xzm_B           63 VQHPEDVMVVCSRIYG--QRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPR----SDFQAIKEASYV  136 (241)
T ss_dssp             CSSGGGEEEECCSHHH--HHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTT----TTHHHHHHHTTT
T ss_pred             HhCCCeEEEEECCHHH--HHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCC----cchHHHHHHHHh
Confidence            4566789999886542  2334444444433222 1 112222211 11223456788887543    234688899999


Q ss_pred             CCeEEEEEcCCCCccccccCeeEEc
Q 006659          393 GALCVGITNTVGSAIARKTHCGVHI  417 (636)
Q Consensus       393 g~~vi~IT~~~~s~La~~ad~~l~~  417 (636)
                      |++||+|.+. ++++. ..|+.|+.
T Consensus       137 ~IPvIalvDT-n~~p~-~VDy~IP~  159 (241)
T 2xzm_B          137 NIPVIALCDS-DSPLA-YVDVVIPC  159 (241)
T ss_dssp             TCCEEECCCS-SSCCT-TCCEECCS
T ss_pred             CCCEEEEecC-CCCcc-cccEEEeC
Confidence            9999999987 56554 56776644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	636
d1moqa_	366	c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-	1e-110
d1j5xa_	329	c.80.1.1 (A:) Hypothetical protein TM0813 {Thermot	1e-61
d1x9ia_	300	c.80.1.1 (A:) Glucose-6-phosphate isomerase, conje	1e-31
d1xffa_	238	d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N	4e-30
d1ecfa2	249	d.153.1.1 (A:1-249) Glutamine PRPP amidotransferas	6e-24
d1gph12	234	d.153.1.1 (1:1-234) Glutamine PRPP amidotransferas	4e-17
d1te5a_	253	d.153.1.1 (A:) Hypothetical protein YafJ (PA1307)	1e-13
d1nria_	248	c.80.1.3 (A:) Hypothetical protein HI0754 {Haemoph	2e-11
d1m3sa_	186	c.80.1.3 (A:) Hypothetical protein YckF {Bacillus	1e-10
d1jeoa_	177	c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isom	1e-09
d1q15a2	204	d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectob	4e-07
d1jgta2	206	d.153.1.1 (A:4-209) beta-Lactam synthetase {Strept	5e-06

>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]} Length = 366

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS)
species: Escherichia coli [TaxId: 562]

 Score =  335 bits (859), Expect = e-110
 Identities = 147/371 (39%), Positives = 224/371 (60%), Gaps = 10/371 (2%)

Query: 266 NKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHL-KTIRRSRRIVF 324
           +KG Y HYMQKEI+EQP ++  T+ GR+          V L  L  +  + + +   I  
Sbjct: 2   DKGIYRHYMQKEIYEQPNAIKNTLTGRI------SHGQVDLSELGPNADELLSKVEHIQI 55

Query: 325 IGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQ 384
           + CGTSYN+ + +R   E L+ +P  +EIAS+   R++ + R    + +SQSGETADTL 
Sbjct: 56  LACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLA 115

Query: 385 ALEYASENGAL-CVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLAL 443
            L  + E G L  + I N  GS++ R++   +  NAG EIGVASTKA+T+Q+ V+ ML  
Sbjct: 116 GLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVA 175

Query: 444 AIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYA 503
            +        +    I+ GL  LP+++ ++L  D+ ++ LA+    +   L  GRG  Y 
Sbjct: 176 KLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYP 235

Query: 504 TALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLH 563
            ALEGALK+KE++ +H+E   AGE+KHGPLAL+D ++P++V+A  +    K +S I+++ 
Sbjct: 236 IALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVR 295

Query: 564 ARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNV 623
           AR G+L V   +          +  +IE+P VE+ + P+   VPLQLLAYH+ +++G +V
Sbjct: 296 ARGGQLYVFADQDAG--FVSSDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDV 353

Query: 624 DQPRNLAKSVT 634
           DQPRNLAKSVT
Sbjct: 354 DQPRNLAKSVT 364

>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]} Length = 329

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Hypothetical protein TM0813
species: Thermotoga maritima [TaxId: 2336]

 Score =  205 bits (522), Expect = 1e-61
 Identities = 78/363 (21%), Positives = 145/363 (39%), Gaps = 37/363 (10%)

Query: 273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYN 332
              KEI +Q   L       ++       K+ +   ++ +L     +  ++F+GCG+SYN
Sbjct: 2   KTLKEITDQKNELKKFFENFVLN----LEKTEIFSEIQKNL-----TDEVLFVGCGSSYN 52

Query: 333 AALAARPILEELSDLPVTMEIASDLVDRQAPIYREDT-AVFVSQSGETADTLQALEYASE 391
            AL      E +  +      A ++  ++ P   E   A   S++G T + L A +   +
Sbjct: 53  LALTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKK 112

Query: 392 NGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTIS 451
                +GIT    S +A+++   +      E  V  TK+++  ++ +  LA  I G++  
Sbjct: 113 RNHRTIGITIEEESRLAKESDLPLVFPVREEAIVM-TKSFSMILLSLMFLADKIAGNSTE 171

Query: 452 TQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALK 511
             +          D+  KV E              L      +  G    +  +LE ALK
Sbjct: 172 RFSELVGYSPEFFDISWKVIEK-----------IDLKEHDHFVFLGMSEFFGVSLESALK 220

Query: 512 VKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIV 571
             E++L  SE     E +HGP ALV +   + +         +++ + ++L +    ++ 
Sbjct: 221 CIEMSLTFSEAYSTLEYRHGPKALVKKGTLVFMQKVSGMDE-QEKRLRKELESLGATVLE 279

Query: 572 MCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAK 631
           +   GD              +P   D     +  VP Q+L Y   + RG + D+P +L K
Sbjct: 280 VGEGGD--------------IPVSNDWKSAFLRTVPAQILGYQKAISRGISPDKPPHLEK 325

Query: 632 SVT 634
           +V 
Sbjct: 326 TVV 328

>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 300

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Glucose-6-phosphate isomerase, conjectural
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  122 bits (307), Expect = 1e-31
 Identities = 46/312 (14%), Positives = 88/312 (28%), Gaps = 54/312 (17%)

Query: 316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQ 375
           I    R+   G G S   A   R       +  V +    D         R+   + VS 
Sbjct: 33  IEAMPRLYISGMGGSGVVADLIRDFSLTW-NWEVEVIAVKDY----FLKARDGLLIAVSY 87

Query: 376 SGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQI 435
           SG T +TL  +EYA         +  T G  +A+     V +   +    A  +  T+ +
Sbjct: 88  SGNTIETLYTVEYAKRRRIPA--VAITTGGRLAQMGVPTVIVPKASAPRAALPQLLTAAL 145

Query: 436 VVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLV 495
            V+A +                        +  K+ E L+   E  +       ++   +
Sbjct: 146 HVVAKVYG----------------------IDVKIPEGLEPPNEALIHKLVEEFQKRPTI 183

Query: 496 FGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQ 555
                    A     +  E A +     +  E  H  +   +  +  L          ++
Sbjct: 184 IAAESMRGVAYRVKNEFNENAKIEPSVEILPEAHHNWIEGSERAVVALTSPHIPKEHQER 243

Query: 556 QSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHL 615
                ++       + M  KG                         +  +  + + +  L
Sbjct: 244 VKATVEIVGGSIYAVEMHPKG------------------------VLSFLRDVGIASVKL 279

Query: 616 TVLRGYN-VDQP 626
             +RG N +  P
Sbjct: 280 AEIRGVNPLATP 291

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  116 bits (291), Expect = 4e-30
 Identities = 84/286 (29%), Positives = 131/286 (45%), Gaps = 56/286 (19%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGI   +       +R + ++L  GLRRLEYRGYDSAG+ + D+                
Sbjct: 1   CGIVGAIA------QRDVAEILLEGLRRLEYRGYDSAGLAVVDA---------------- 38

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
                  EG++ + ++ + +     +   E       GIAHTRWATHGEP+  N+HP  S
Sbjct: 39  -------EGHM-TRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVS 90

Query: 122 GAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQPV 181
                 +VVHNG+I N+E L+E L   G+TF SETDTE        V       E  Q  
Sbjct: 91  E---HIVVVHNGIIENHEPLREELKARGYTFVSETDTE--------VIAHLVNWELKQGG 139

Query: 182 TFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSILKFDNAKGRN 241
           T  + V+  +  L GAY  +     +P+ L+A + GSPL++G+  G   I          
Sbjct: 140 TLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFI---------A 190

Query: 242 GGTYARPASVQRALSILEMEVEQINKGNYEHY------MQKEIHEQ 281
               A     +R + + E ++ +I + +   +      ++++  E 
Sbjct: 191 SDQLALLPVTRRFIFLEEGDIAEITRRSVNIFDKTGAEVKRQDIES 236

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 249

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 99.1 bits (246), Expect = 6e-24
 Identities = 44/227 (19%), Positives = 75/227 (33%), Gaps = 33/227 (14%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CGI              + Q +++ L  L++RG D+AGI   D                 
Sbjct: 1   CGIVGIAG------VMPVNQSIYDALTVLQHRGQDAAGIITID----------------- 37

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
                    N   L K+        E    +    + GI H R+ T G  +   + P   
Sbjct: 38  -------ANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYV 90

Query: 122 GAGNEFLVVHNGVITNYEVLKET-LIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQP 180
            +     + HNG +TN   L++           + +D+E++  +     D        + 
Sbjct: 91  NSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYP-LEA 149

Query: 181 VTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG-SPLLLGVKD 226
                 +    R + GAYA +     +         G  PL+LG +D
Sbjct: 150 DNIFAAIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRD 196

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 78.9 bits (193), Expect = 4e-17
 Identities = 48/232 (20%), Positives = 74/232 (31%), Gaps = 43/232 (18%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGC 61
           CG+F               Q+ + GL  L++RG + AGI   D                 
Sbjct: 1   CGVFGIWG------HEEAPQITYYGLHSLQHRGQEGAGIVATD----------------- 37

Query: 62  PPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTS 121
                   G   +  K         +            I H R+AT G     N  P   
Sbjct: 38  --------GEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGGGGYENVQPLLF 89

Query: 122 --GAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEGDQ 179
                    + HNG + N   LK+ L   G  F++ +DTEV+  L K             
Sbjct: 90  RSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHF-------- 141

Query: 180 PVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDGAVSI 231
             T    +   +  L+GAYA +  ++      +      PL +G+   A  +
Sbjct: 142 --TLKDQIKNSLSMLKGAYAFLIMTETEMIVALDPNGLRPLSIGMMGDAYVV 191

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]} Length = 253

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 69.1 bits (168), Expect = 1e-13
 Identities = 27/233 (11%), Positives = 54/233 (23%), Gaps = 45/233 (19%)

Query: 2   CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRG------YDSAGICIDDSSSPSPLPSPS 55
           C +        N         +      L  RG       D  GI   +           
Sbjct: 1   CELLGMSA---NVPTD-----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVR------ 46

Query: 56  SSVNGCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRN 115
                    +F+          +  +      +      S    I H R A  G+    N
Sbjct: 47  ---------LFQDPL-------ASVDSEVARLVQRFPIKS-ETVIGHIRQANVGKVGLSN 89

Query: 116 SHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANE 174
           +HP      G  +   HNG + +++         G T       +++ ++ +   +    
Sbjct: 90  THPFIRELGGRYWTFAHNGQLADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPV 149

Query: 175 EEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKDG 227
           E          V++                    + L          +  +  
Sbjct: 150 EV------LLPVLISACDEYRKKGVFNAL-ISDGDWLFTFCSSKLAYITRRAP 195

>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]} Length = 248

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein HI0754
species: Haemophilus influenzae [TaxId: 727]

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 24/158 (15%)

Query: 313 LKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAP--------- 363
           ++  ++  R+++IG GTS    +           +   M          A          
Sbjct: 54  VQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAED 113

Query: 364 -------------IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK 410
                          + D  V ++ SG T   +  L+YA   GAL + I +   S +A  
Sbjct: 114 NTKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEI 173

Query: 411 THCGVHINAGAE--IGVASTKAYTSQIVVMAMLALAIG 446
               +    G E   G +  K+ T+Q +V+ ML  A  
Sbjct: 174 ADIAIETIVGPEILTGSSRLKSGTAQKMVLNMLTTASM 211

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Length = 186

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

 Score = 59.1 bits (142), Expect = 1e-10
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 8/133 (6%)

Query: 314 KTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFV 373
             I  S +I   G G S    L A+     L  +     I  ++     P+   D  +  
Sbjct: 32  DHILSSHQIFTAGAGRS---GLMAKSFAMRLMHMGFNAHIVGEI--LTPPLAEGDLVIIG 86

Query: 374 SQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE---IGVASTKA 430
           S SGET   +     A     +   +T    S+I ++    + +    +    G   T  
Sbjct: 87  SGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQ 146

Query: 431 YTSQIVVMAMLAL 443
               +    +L  
Sbjct: 147 PMGSLFEQTLLLF 159

>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 177

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Probable 3-hexulose-6-phosphate isomerase MJ1247
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 7/138 (5%)

Query: 309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYRED 368
           L   +  I ++++I   G G S       R     L  L        +         ++D
Sbjct: 27  LDSLIDRIIKAKKIFIFGVGRS---GYIGRCFAMRLMHLGFKSYFVGE--TTTPSYEKDD 81

Query: 369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG-AEIGVAS 427
             + +S SG T   L   + A       + I    G+ +       + +    ++     
Sbjct: 82  LLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEVKKSKYLPMG 140

Query: 428 TKAYTSQIVVMAMLALAI 445
           T    + ++ + ++   I
Sbjct: 141 TTFEETALIFLDLVIAEI 158

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 6/51 (11%), Positives = 10/51 (19%)

Query: 114 RNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKL 164
             +                G + N   L               D E++  L
Sbjct: 37  EQNGHYQKCEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALL 87

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Length = 206

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 98  AGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETD 157
           A + H        P    +   T   G     V  G I N + L   L         E D
Sbjct: 45  ATLVHAPSVA---PDRAVARSLT---GAPTTAVLAGEIYNRDELLSVL---PAGPAPEGD 95

Query: 158 TEVIPKLAKFVFDKA 172
            E++ +L +     A
Sbjct: 96  AELVLRLLERYDLHA 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	636
d1moqa_	366	"Isomerase domain" of glucosamine 6-phosphate synt	100.0
d1j5xa_	329	Hypothetical protein TM0813 {Thermotoga maritima [	100.0
d1ecfa2	249	Glutamine PRPP amidotransferase, N-terminal domain	100.0
d1xffa_	238	Glucosamine 6-phosphate synthase, N-terminal domai	100.0
d1gph12	234	Glutamine PRPP amidotransferase, N-terminal domain	100.0
d1x9ia_	300	Glucose-6-phosphate isomerase, conjectural {Archae	99.96
d1ct9a2	192	Asparagine synthetase B, N-terminal domain {Escher	99.95
d1te5a_	253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	99.88
d1vima_	192	Hypothetical protein AF1796 {Archaeon Archaeoglobu	99.79
d1jeoa_	177	Probable 3-hexulose-6-phosphate isomerase MJ1247 {	99.76
d1m3sa_	186	Hypothetical protein YckF {Bacillus subtilis [TaxI	99.75
d1jgta2	206	beta-Lactam synthetase {Streptomyces clavuligerus	99.74
d1ofda3	430	Alpha subunit of glutamate synthase, N-terminal do	99.67
d1q15a2	204	beta-Lactam synthetase {Pectobacterium carotovorum	99.66
d1ea0a3	422	Alpha subunit of glutamate synthase, N-terminal do	99.66
d1nria_	248	Hypothetical protein HI0754 {Haemophilus influenza	99.62
d1x94a_	191	Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T	99.45
d1tk9a_	188	Phosphoheptose isomerase GmhA1 {Campylobacter jeju	99.21
d1x92a_	194	Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi	99.15
d1wiwa_	284	Glucose-6-phosphate isomerase-like protein TTHA134	98.95
d1m3sa_	186	Hypothetical protein YckF {Bacillus subtilis [TaxI	98.46
d1vima_	192	Hypothetical protein AF1796 {Archaeon Archaeoglobu	98.38
d1jeoa_	177	Probable 3-hexulose-6-phosphate isomerase MJ1247 {	98.33
d1moqa_	366	"Isomerase domain" of glucosamine 6-phosphate synt	97.98
d1j5xa_	329	Hypothetical protein TM0813 {Thermotoga maritima [	97.81
d1x94a_	191	Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T	97.37
d1c7qa_	442	Phosphoglucose isomerase, PGI {Bacillus stearother	96.6
d1q50a_	561	Phosphoglucose isomerase, PGI {Leishmania mexicana	96.37
d1tk9a_	188	Phosphoheptose isomerase GmhA1 {Campylobacter jeju	96.13
d1nria_	248	Hypothetical protein HI0754 {Haemophilus influenza	95.61
d1x92a_	194	Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi	95.55
d1iata_	556	Phosphoglucose isomerase, PGI {Human (Homo sapiens	94.85
d1x9ia_	300	Glucose-6-phosphate isomerase, conjectural {Archae	93.18
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.4
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	88.22
d2jioa2	597	Periplasmic nitrate reductase alpha chain {Desulfo	88.15
d2iv2x2	564	Formate dehydrogenase H {Escherichia coli [TaxId:	86.82
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	81.97

>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-64  Score=535.10  Aligned_cols=363  Identities=40%  Similarity=0.672  Sum_probs=319.6

Q ss_pred             hcCChHHHHHHHHHhcHHHHHHHhhccccccCCcccccccccchHH-HHHHHcCCCeEEEEeechhHHHHHHHHHHHHHh
Q 006659          266 NKGNYEHYMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKD-HLKTIRRSRRIVFIGCGTSYNAALAARPILEEL  344 (636)
Q Consensus       266 ~~~~y~~~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~-~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~  344 (636)
                      +|++|++||+|||.|||+++++++..+++..      ..+.+.+.. +.+.+++.++|+|+|||+|+++|..+++++++.
T Consensus         2 ~~~~~~~~m~kEI~eQP~~l~~~l~~~~~~~------~~~~~~~~~~~~~~~~~i~~I~~vG~GsS~~aa~~~~~~~~~~   75 (366)
T d1moqa_           2 DKGIYRHYMQKEIYEQPNAIKNTLTGRISHG------QVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESL   75 (366)
T ss_dssp             CCTTCSSHHHHHHHTHHHHHHHHHTTSEETT------EECCGGGCSSHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHhccC------ccchhhhhhhhHHHHhcCCEEEEEEehHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999997765432      122233322 223457789999999999999999999999999


Q ss_pred             cCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCC-eEEEEEcCCCCccccccCeeEEcCCCCcc
Q 006659          345 SDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGA-LCVGITNTVGSAIARKTHCGVHINAGAEI  423 (636)
Q Consensus       345 ~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~-~vi~IT~~~~s~La~~ad~~l~~~~~~e~  423 (636)
                      .++++.+..+++|.+......++++||++|+||+|++++++++.++++|+ ++|+||++++|+|++.||++|.+.+|.|.
T Consensus        76 ~~~~v~~~~~sef~~~~~~~~~~~lvI~iSqSG~s~~ti~a~~~a~~~g~~~ti~iT~~~~S~la~~ad~~i~~~~g~E~  155 (366)
T d1moqa_          76 AGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEI  155 (366)
T ss_dssp             SCCCEEEEEHHHHHTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCC
T ss_pred             cCcceEEEecccccccccccCCCCEEEEeeccCCchhHHHHHHHHHHcCCCcEEEEECCCCCHHHHhcCcceeecccccc
Confidence            99999999999998777777899999999999999999999999999995 79999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHH
Q 006659          424 GVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYA  503 (636)
Q Consensus       424 ~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~  503 (636)
                      +++.|++|+++++.++++++.++.......+......+.+..++.......+.++++.++++++.+.++++++|+|++||
T Consensus       156 ~~~~Tk~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~G~~~g  235 (366)
T d1moqa_         156 GVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYP  235 (366)
T ss_dssp             SSSCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCSEEEEEECGGGHH
T ss_pred             cchhhhHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCcceEEecCCCcHH
Confidence            99999999999999999998888776655444444455555566555555556888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCC
Q 006659          504 TALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFP  583 (636)
Q Consensus       504 ~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~  583 (636)
                      +|+|++|||+|++++|+++++++||+|||++.++++++++++.++++.++++.+.+++++++|+++++|+.++.....  
T Consensus       236 ~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  313 (366)
T d1moqa_         236 IALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVS--  313 (366)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGCCCC--
T ss_pred             HHHHHHHHHHHHHhHeEEeecHHHhhCCchheecCCceEEEecCCChHHHHHHHHHHHHHHcCCeEEEEecCCccccc--
Confidence            999999999999999999999999999999999999999999998888999999999999999999999987654321  


Q ss_pred             CCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceeecC
Q 006659          584 GGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ  636 (636)
Q Consensus       584 ~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~~~  636 (636)
                      ...+.++.+|.++++++||++++|+|+|||++|+.+|+|||+||||+||||||
T Consensus       314 ~~~~~~i~~p~~~~~l~pl~~~ip~Qlla~~~A~~~G~~PD~Pr~L~K~vtve  366 (366)
T d1moqa_         314 SDNMHIIEMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE  366 (366)
T ss_dssp             BTTEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHHTCCSSSCTTCCSCCCCC
T ss_pred             cCCceEEecCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCeeeC
Confidence            13467889999989999999999999999999999999999999999999998

>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Hypothetical protein TM0813
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.5e-54  Score=450.36  Aligned_cols=325  Identities=22%  Similarity=0.334  Sum_probs=266.9

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHH-HcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEE
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKT-IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTM  351 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~-l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~  351 (636)
                      .|++||.|||+.+++++++.....          +..+.+.+. .+..++|+|+|||+|+++|..++++++++.++++.+
T Consensus         2 ~t~~EI~eqp~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~i~~~G~GsS~~aa~~~~~~~~~~~~~~~~~   71 (329)
T d1j5xa_           2 KTLKEITDQKNELKKFFENFVLNL----------EKTEIFSEIQKNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKA   71 (329)
T ss_dssp             HHHHHHHHHHHTHHHHHHHTGGGT----------TC------C----CCEEEEEESTHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             ccHHHHHhHHHHHHHHHHHHhcch----------hhhhhhHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhcCCCceE
Confidence            589999999999999987644322          222222221 257899999999999999999999999999999999


Q ss_pred             eeccchhcccC-CCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhh
Q 006659          352 EIASDLVDRQA-PIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKA  430 (636)
Q Consensus       352 ~~~~e~~~~~~-~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s  430 (636)
                      ..++++.+... ..+++|+||++|+||+|++++++++.||++|+++|+||++++|+|++.||+.|.+++ .|.+++.|++
T Consensus        72 ~~~~e~~~~~~~~~~~~~lvI~iS~SG~T~e~i~a~~~a~~~ga~~i~iT~~~~s~la~~~d~~i~~~~-~ee~~~~Tks  150 (329)
T d1j5xa_          72 IPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPV-REEAIVMTKS  150 (329)
T ss_dssp             EEHHHHHTTCSCCCCSSEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEECCC-CCCSSSCCHH
T ss_pred             EecchhhcccccccCCCCeEEEEecCCCChHHHHHHHhhhhhhhhhhccccccccchhhcccceeeecc-chhhhhHHHh
Confidence            99999976543 568999999999999999999999999999999999999999999999999999875 4567889999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhchHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHH
Q 006659          431 YTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKLDQEMKVLAKQLIAEQSLLVFGRGYNYATALEGAL  510 (636)
Q Consensus       431 ~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~al  510 (636)
                      |+++++++++++..++....   +++.+.   +..+++.++...   .+.+++  .+.+.+.++++|+|++||+|+|++|
T Consensus       151 ~~~~l~~l~~l~~~~~~~~~---~~~~~~---~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~lG~G~~~~~A~e~al  219 (329)
T d1j5xa_         151 FSMILLSLMFLADKIAGNST---ERFSEL---VGYSPEFFDISW---KVIEKI--DLKEHDHFVFLGMSEFFGVSLESAL  219 (329)
T ss_dssp             HHHHHHHHHHHHHHHHTCCC---HHHHHH---HHHHHHHHHHHH---HHHHTS--CGGGCCEEEEECCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcc---cchHHH---HHHhHHHHHHhh---hhhhhc--cccccceeEEecCCCccHhHHHHHH
Confidence            99999999999888876542   222222   222332222211   111111  3678899999999999999999999


Q ss_pred             HHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEE
Q 006659          511 KVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVI  590 (636)
Q Consensus       511 Kl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~  590 (636)
                      ||+|++++||++++++||+|||++.+++++++|++.+ +...++..++.++++++|.++++|+..++             
T Consensus       220 Kl~E~~~i~a~~~~~~Ef~HGP~~~~~~~~~v~l~~~-~~~~~~~~~~~~~~~~~g~~v~~i~~~~d-------------  285 (329)
T d1j5xa_         220 KCIEMSLTFSEAYSTLEYRHGPKALVKKGTLVFMQKV-SGMDEQEKRLRKELESLGATVLEVGEGGD-------------  285 (329)
T ss_dssp             HHHHHHCCEEEEECGGGGGTTGGGGCCTTEEEEEECC-TTCHHHHHHHHHHHHHTTCEEEEESTTSS-------------
T ss_pred             HHHhhcceeEEeechhhhhcCcchhccCCceeeeecc-hHHHHHHHHHHHHHHHcCCeEEEECCCCC-------------
Confidence            9999999999999999999999999999998887765 44667888889999999999999986432             


Q ss_pred             EcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCcceee
Q 006659          591 EVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRNLAKSVT  634 (636)
Q Consensus       591 ~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~l~k~v~  634 (636)
                       +|.++++++||++++|+|+|||++|+.+|+|||+||||+|||.
T Consensus       286 -lp~~~~~~~pll~~ip~Qllay~~A~~~GidPD~Pr~L~K~v~  328 (329)
T d1j5xa_         286 -IPVSNDWKSAFLRTVPAQILGYQKAISRGISPDKPPHLEKTVV  328 (329)
T ss_dssp             -BCCCCSGGGGGGTTHHHHHHHHHHHHHHTCCTTSCTTCCSSCC
T ss_pred             -CCCCCchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCceee
Confidence             4666789999999999999999999999999999999999996

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-37  Score=307.72  Aligned_cols=220  Identities=20%  Similarity=0.294  Sum_probs=171.4

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++.      +++...++.||.+||||||||+||++.+.+              +.+.+.|..|.+.++.    +
T Consensus         1 CGI~G~~~~------~~~~~~l~~gL~~LqhRG~DsaGIa~~~~~--------------~~~~~~k~~~~~~~~~----~   56 (249)
T d1ecfa2           1 CGIVGIAGV------MPVNQSIYDALTVLQHRGQDAAGIITIDAN--------------NCFRLRKANGLVSDVF----E   56 (249)
T ss_dssp             CEEEEEECS------SCCHHHHHHHHHHTGGGCCSEEEEEEECTT--------------SCEEEEEEESCHHHHC----C
T ss_pred             CEEEEEEcC------hhhHHHHHHHHHHHhccCcCeeEEEEEECC--------------CEEEEEEcCCccchhh----h
Confidence            999999953      345677899999999999999999999865              2467778888776532    2


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHH-HHhCCCccccCCHhhH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKET-LIRHGFTFESETDTEV  160 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~-l~~~g~~~~~~tDsE~  160 (636)
                      ....      ..+.|+++|||+||||+|.++..|+|||....++++++||||+|+|+.+|+++ |...|+.|.++||||+
T Consensus        57 ~~~~------~~~~g~~gIGHtR~aT~G~~~~~nahP~~~~~~~~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEv  130 (249)
T d1ecfa2          57 ARHM------QRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEI  130 (249)
T ss_dssp             HHHH------HHCCSSEEEEEEECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHH
T ss_pred             hhhh------ccCCCceeeeEeecccCCCCchhcccccccCCCCcEEEEeeeeeccHHHHHHHHHHhcCccccccchHHH
Confidence            2111      24569999999999999999999999976654567999999999999999655 6678899999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc----------C
Q 006659          161 IPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD----------G  227 (636)
Q Consensus       161 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~----------~  227 (636)
                      +++++...++... .......++.++++.+++.|+|+|+++++..  ...++++||+   |||++|.+.          +
T Consensus       131 i~~li~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~Gs~~~~~~~~--~~~~~~~rD~~GirPL~~G~~~~~~~~~~~~va  207 (249)
T d1ecfa2         131 LLNIFASELDNFR-HYPLEADNIFAAIAATNRLIRGAYACVAMII--GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVA  207 (249)
T ss_dssp             HHHHHHHHHTTCC-SSSCCHHHHHHHHHHHHHHCCEEEEEEEEET--TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEE
T ss_pred             HHHHHHHHHhccc-cccchhhhHHHHHHHHHHhcCCCceEEEEec--CCCceEEEecCCCccceeccccccCCCcEEEEE
Confidence            9999998886422 0011123588999999999999999998885  4689999999   999999853          4


Q ss_pred             cccccccc----e-eeccCCCe--eeCCCc-ccce
Q 006659          228 AVSILKFD----N-AKGRNGGT--YARPAS-VQRA  254 (636)
Q Consensus       228 ~~~~~~~~----~-~~~~~g~~--~~~~~~-~~~~  254 (636)
                      ||..|+..    . ..+.||++  +..+|. ..++
T Consensus       208 SE~~Al~~~~~~~i~~l~pGe~v~i~~~G~~~~~~  242 (249)
T d1ecfa2         208 SESVALDTLGFDFLRDVAPGEAIYITEEGQLFTRQ  242 (249)
T ss_dssp             SSTHHHHHHTCEEEEECCTTEEEEEETTCCEEEEE
T ss_pred             eCHHHHhhcCceEEEEcCCCeEEEEECCCCEEEEE
Confidence            55555522    2 27999999  456786 3444

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-37  Score=303.60  Aligned_cols=202  Identities=39%  Similarity=0.675  Sum_probs=172.2

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++.      .++.+.++.+|.+||||||||+||++++.+              +.+.++|..+.+....    +
T Consensus         1 CGI~G~~~~------~~~~~~l~~~l~~lqhRG~Ds~Gi~~~~~~--------------~~~~~~k~~~~~~~~~----~   56 (238)
T d1xffa_           1 CGIVGAIAQ------RDVAEILLEGLRRLEYRGYDSAGLAVVDAE--------------GHMTRLRRLGKVQMLA----Q   56 (238)
T ss_dssp             CEEEEEECS------SCCHHHHHHHHHHHGGGCCSEEEEEEECTT--------------CCEEEEEEESCHHHHH----H
T ss_pred             CEEEEEECC------hhHHHHHHHHHHHhcccCccccCEEEEcCC--------------CCEEEEeecccccccc----c
Confidence            999999963      344577899999999999999999999765              3688899988776533    2


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI  161 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i  161 (636)
                      ...      ...+.|.++|||+||+|+|..+..|+|||...   +++++|||+|+|+.+||++|...|+.|.+.||||++
T Consensus        57 ~~~------~~~~~g~~~igH~R~aT~g~~~~~n~~p~~~~---~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi  127 (238)
T d1xffa_          57 AAE------EHPLHGGTGIAHTRWATHGEPSEVNAHPHVSE---HIVVVHNGIIENHEPLREELKARGYTFVSETDTEVI  127 (238)
T ss_dssp             HHH------HSCCCCSEEEEEEECCSSSCSSTTTSSCEEET---TEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHH
T ss_pred             ccc------ccccCCcEEEeeecccccccccccCCccccCC---cEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhh
Confidence            211      13567999999999999999888999999865   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCCceEEEecc-----Ccccccccce
Q 006659          162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGSPLLLGVKD-----GAVSILKFDN  236 (636)
Q Consensus       162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~pL~~G~~~-----~~~~~~~~~~  236 (636)
                      ++++.++....        .++.+++++++++|+|+||+++++.+.++.++++|++|||++|...     +||..++...
T Consensus       128 ~~l~~~~~~~~--------~~~~e~i~~~~~~l~G~~a~~i~~~~~~~~i~~~~~~~PL~~g~~~~~~~~aSE~~al~~~  199 (238)
T d1xffa_         128 AHLVNWELKQG--------GTLREAVLRAIPQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPV  199 (238)
T ss_dssp             HHHHHHHHHTS--------SCHHHHHHHHGGGCCEEEEEEEEETTCTTCEEEEEEBSCCEEEECSSCEEEESSGGGTTTT
T ss_pred             hhhhhHhhhcC--------CCHHHHHHHHHHHccCchhhhhhhccCCCEEEEECCCccCEEEECCceEEEEcCHHHHHHh
Confidence            99998877543        4799999999999999999999997656789999999999999998     5666666553


Q ss_pred             e----eccCCCe
Q 006659          237 A----KGRNGGT  244 (636)
Q Consensus       237 ~----~~~~g~~  244 (636)
                      +    .++||++
T Consensus       200 ~~~~~~l~~gei  211 (238)
T d1xffa_         200 TRRFIFLEEGDI  211 (238)
T ss_dssp             CSEEEECCTTCE
T ss_pred             hceEEEeCCCeE
Confidence            3    7899998

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.7e-35  Score=290.00  Aligned_cols=205  Identities=24%  Similarity=0.367  Sum_probs=170.2

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      |||||+++.      ++....++.||.+|||||||++||++.+++               .+.++|..|.+....    .
T Consensus         1 CGI~G~~~~------~~~~~~~~~~l~~lqhRG~Ds~Gi~~~~~~---------------~~~~~k~~g~~~~~~----~   55 (234)
T d1gph12           1 CGVFGIWGH------EEAPQITYYGLHSLQHRGQEGAGIVATDGE---------------KLTAHKGQGLITEVF----Q   55 (234)
T ss_dssp             CEEEEEESC------TTHHHHHHHHHHTTGGGCSSCEEEEEECSS---------------CEEEEEESSCHHHHT----C
T ss_pred             CeEEEEECC------cccHHHHHHHHHHhhcCCcccCcEEEEcCC---------------EEEEEecCCcccccc----h
Confidence            999999953      345667899999999999999999999875               899999999877532    1


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC--CCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhh
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG--AGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTE  159 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~--~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE  159 (636)
                      .     .. ...+.++++|||+||+|+|.++..|+||+...  ..+++++||||+|+|+.+||++|...|+.|.++||+|
T Consensus        56 ~-----~~-~~~~~g~~~igh~r~~t~g~~~~~~~~p~~~~~~~~~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e  129 (234)
T d1gph12          56 N-----GE-LSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTE  129 (234)
T ss_dssp             S-----SS-TTTCCCSEEEEEECCCSSSCBCGGGSSCEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHH
T ss_pred             h-----hh-cccCCCceeeeeecccccCCchhccccccceeccccceEEEEecccccCHHHHHHHHHHcCCeeeeecchh
Confidence            1     11 12457899999999999999999999998655  4568999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccc
Q 006659          160 VIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSI  231 (636)
Q Consensus       160 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~  231 (636)
                      ++++++..    ++      ..++.+++++++++|+|+|||++++   .+.++++||+   |||++|...     +||..
T Consensus       130 ~~~~~~~~----~~------~~~~~~ai~~~~~~l~G~~a~~i~~---~~~~~~~rD~~G~~PL~~g~~~~~~~~aSE~~  196 (234)
T d1gph12         130 VLAHLIKR----SG------HFTLKDQIKNSLSMLKGAYAFLIMT---ETEMIVALDPNGLRPLSIGMMGDAYVVASETC  196 (234)
T ss_dssp             HHHHHHHT----CC------CSSHHHHHHHHHTTCCEEEEEEEEC---SSCEEEEECTTCCSCCEEEEETTEEEEESSTH
T ss_pred             HHHHHHHH----Hh------hhhHHHHHHHHHHhcCCceEEEEee---cCceeEEEcCCCCcCEEEEecCCEEEEEECHH
Confidence            99998863    22      2578999999999999999999998   5789999999   899999998     45554


Q ss_pred             cccc--e---eeccCCCe--eeCCCc
Q 006659          232 LKFD--N---AKGRNGGT--YARPAS  250 (636)
Q Consensus       232 ~~~~--~---~~~~~g~~--~~~~~~  250 (636)
                      |+..  .   .++.||++  +..+|.
T Consensus       197 al~~~~~~~i~el~pGeii~i~~~g~  222 (234)
T d1gph12         197 AFDVVGATYLREVEPGEMLIINDEGM  222 (234)
T ss_dssp             HHHHHTCEEEEECCTTEEEEEETTEE
T ss_pred             HHhhcCCcEEEEcCCCEEEEEeCCCC
Confidence            5432  2   27999999  445554

>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Glucose-6-phosphate isomerase, conjectural
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.96  E-value=3.6e-29  Score=255.82  Aligned_cols=259  Identities=17%  Similarity=0.122  Sum_probs=186.3

Q ss_pred             HHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCC
Q 006659          315 TIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQALEYASENGA  394 (636)
Q Consensus       315 ~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~  394 (636)
                      .+..++||+++|||+|+++|..++.++.+. +.++.+....+.    ...++++++|++|+||+|.||+.+++.++++|+
T Consensus        32 ~~~~~~~i~i~G~GgS~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~tlvI~iSqSG~T~Etl~a~~~a~~~g~  106 (300)
T d1x9ia_          32 RIEAMPRLYISGMGGSGVVADLIRDFSLTW-NWEVEVIAVKDY----FLKARDGLLIAVSYSGNTIETLYTVEYAKRRRI  106 (300)
T ss_dssp             ECCCCSEEEEECCHHHHHHHHHHHHHHHHT-TCSSEEEEECSS----CCCCSSSEEEEECSSSCCHHHHHHHHHHHHHTC
T ss_pred             HhcCCCeEEEEEecHHHHHHHHHHHHHHhc-CCCceEEeeccc----CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhcCc
Confidence            457899999999999999999999988875 444333322221    224678999999999999999999999999999


Q ss_pred             eEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHH
Q 006659          395 LCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARREAIIDGLCDLPNKVREVL  474 (636)
Q Consensus       395 ~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  474 (636)
                      +++++|+  ++++...++..+.+..+.+.....++++++++.++..+.    ......                  .+.+
T Consensus       107 ~~i~it~--~~~l~~~~~~~~~i~~~~~~~~a~~~~~~~~l~~l~~~~----~~~~~~------------------~~~l  162 (300)
T d1x9ia_         107 PAVAITT--GGRLAQMGVPTVIVPKASAPRAALPQLLTAALHVVAKVY----GIDVKI------------------PEGL  162 (300)
T ss_dssp             CEEEEES--STTGGGSSSCEEECCCCSSGGGGHHHHHHHHHHHHHHHH----CCCCCC------------------CSCC
T ss_pred             ceeeccC--CchHHHhhhcccceeccccceeehHHHHHHHHHHHHHhc----CCchHH------------------HHHh
Confidence            9999998  677888899888888888777766777766655443322    111100                  0001


Q ss_pred             hc--hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcch
Q 006659          475 KL--DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACF  552 (636)
Q Consensus       475 ~~--~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~  552 (636)
                      ..  .......+.  ...+..+++|+|..|++|.|+++||+|++++++.+++++||+|||+..++++.+++++.+.++..
T Consensus       163 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~e~~~kl~E~~~~~a~~~~~~E~~Hg~l~~~~~~~~~~~~~~~~~~~  240 (300)
T d1x9ia_         163 EPPNEALIHKLVE--EFQKRPTIIAAESMRGVAYRVKNEFNENAKIEPSVEILPEAHHNWIEGSERAVVALTSPHIPKEH  240 (300)
T ss_dssp             CCCCHHHHHHHHH--HHTTCCEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEETGGGGTHHHHCCSCEEEEECSSSCHHH
T ss_pred             hhhhhhHHHHHHH--HhcccceeEeccccchHHHHHHHHHHhccCCCcccccchhhhchhhhhccCCCcEEEecCCCHHH
Confidence            11  111122222  23456678899999999999999999999999999999999999999998877776666555433


Q ss_pred             HHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 006659          553 SKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIVPLQLLAYHLTVLRGYNVDQPRN  628 (636)
Q Consensus       553 ~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~~q~la~~lA~~~G~~pd~pr~  628 (636)
                      +...+...++.  +..+.++..                      ..-.++.+++|+|+++|++|..+|+||.....
T Consensus       241 ~~~~~~~~ei~--~~~~~~i~~----------------------~~~~~~~li~~~ql~s~~la~~~GidP~~qp~  292 (300)
T d1x9ia_         241 QERVKATVEIV--GGSIYAVEM----------------------HPKGVLSFLRDVGIASVKLAEIRGVNPLATPR  292 (300)
T ss_dssp             HHHHHHHHHHH--CCEEEECCC----------------------SHHHHHHHHHHHHHHHHHHHHHHTCCSSCCHH
T ss_pred             HHHHHHHHHHh--cCCceEEEe----------------------cCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCh
Confidence            33344444443  333433321                      12246677889999999999999999976544

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.3e-28  Score=228.39  Aligned_cols=172  Identities=19%  Similarity=0.287  Sum_probs=138.7

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCCCCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhhhhHHHH
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGYDSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESLVKSVYE   81 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l~~~~f~   81 (636)
                      +||+|+++.+..  .......+..|+..|+|||||+.|++..+                                     
T Consensus         1 s~I~Gi~~~~~~--~~~~~~~~~~m~~~l~hRGpD~~~~~~~~-------------------------------------   41 (192)
T d1ct9a2           1 ASIFGVFDIKTD--AVELRKKALELSRLMRHRGPDWSGIYASD-------------------------------------   41 (192)
T ss_dssp             CEEEEEESCCSC--HHHHHHHHHHHHHTTGGGCBTEEEEEECS-------------------------------------
T ss_pred             CeEEEEEeCCCC--hHHHHHHHHHHHHHhcccCCCCCCeEEeC-------------------------------------
Confidence            589999987642  23355788899999999999999998752                                     


Q ss_pred             HHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHH
Q 006659           82 EVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVI  161 (636)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i  161 (636)
                                     +++|||+||+|.|..  .+.||+... .++++++|||+|+|+.+|+++|.. +..+.+.+|+|++
T Consensus        42 ---------------~~~lgh~Rlsi~~~~--~~~~~~~~~-~~~~~lv~NGeI~N~~~l~~~l~~-~~~~~s~sDtevl  102 (192)
T d1ct9a2          42 ---------------NAILAHERLSIVDVN--AGAQPLYNQ-QKTHVLAVNGEIYNHQALRAEYGD-RYQFQTGSDCEVI  102 (192)
T ss_dssp             ---------------SEEEEEEECCCSCTT--TCCSSEECT-TSCEEEEEEEEETTHHHHHHHHTT-TSCCCSCCTTHHH
T ss_pred             ---------------CEEEEEEEEEEcccc--CCccccccc-CCceEEEecCccchhHHHHHHHhc-CcccCCCCcHHHH
Confidence                           388999999999863  355665554 678999999999999999999965 4677889999999


Q ss_pred             HHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc------Cccccc
Q 006659          162 PKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD------GAVSIL  232 (636)
Q Consensus       162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~------~~~~~~  232 (636)
                      ++++.    +||              .+++++|+|+|||++||.. .++|+++||+   ||||+|...      +||..+
T Consensus       103 l~~~~----~~g--------------~~~~~~l~G~fa~~i~d~~-~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~  163 (192)
T d1ct9a2         103 LALYQ----EKG--------------PEFLDDLQGMFAFALYDSE-KDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKA  163 (192)
T ss_dssp             HHHHH----HHT--------------TTTGGGCCEEEEEEEEETT-TTEEEEEECTTCCSCCEEEECTTCCEEEESSGGG
T ss_pred             HHHhh----hcc--------------hhhhhhhhhheEEEEEecC-cceeEEEEccccceeEEEEEecCcEEEEEeCHHH
Confidence            99987    454              5688999999999999987 7899999999   999999854      455556


Q ss_pred             cccee----eccCCCe-eeCCCc
Q 006659          233 KFDNA----KGRNGGT-YARPAS  250 (636)
Q Consensus       233 ~~~~~----~~~~g~~-~~~~~~  250 (636)
                      ++...    .++||++ ...+|.
T Consensus       164 L~~~~~~i~~~~pG~~l~~~~~~  186 (192)
T d1ct9a2         164 LVPVCRTIKEFPAGSYLWSQDGE  186 (192)
T ss_dssp             TTTTCSEEEECCTTEEEETTTCS
T ss_pred             HHHhhCCeEEcCCccEEEEcCCc
Confidence            65532    8999999 334443

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=8.6e-24  Score=209.83  Aligned_cols=179  Identities=17%  Similarity=0.129  Sum_probs=126.8

Q ss_pred             ceEEEEEecccccchhhHHHHHHHHHHhccccCC------CCcCeeEeCCCCCCCCCCCCCCCCCCCcEEEeecccchhh
Q 006659            2 CGIFAYLNYGVNRERRYILQVLFNGLRRLEYRGY------DSAGICIDDSSSPSPLPSPSSSVNGCPPLVFRQEGNIESL   75 (636)
Q Consensus         2 cGI~g~~~~~~~~~~~~~~~~l~~~l~~l~~RG~------d~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~~~l   75 (636)
                      |||||+.+..+.   .     +...|..++|||+      |||||++++++               ++.++|+.++... 
T Consensus         1 C~l~g~~s~~p~---~-----i~~~l~~l~~r~~~~~~h~DGwGia~~~~~---------------~~~~~k~~~~~~~-   56 (253)
T d1te5a_           1 CELLGMSANVPT---D-----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGR---------------GVRLFQDPLASVD-   56 (253)
T ss_dssp             CCEEEEEEEEEE---E-----CEEEECCCCCCSSSSSSSBCEEEEEEEETT---------------EEEEEEECSBSSC-
T ss_pred             CEEEEEEcCCCc---c-----HHHHHHHHHhcCCcCCCCCCeEEEEEEeCC---------------eEEEEEcCceecc-
Confidence            999999864321   1     2235788999995      89999999875               7899998765432 


Q ss_pred             hhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccC-CCCcEEEEEcceecChHHHHHHHHhCCCcccc
Q 006659           76 VKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSG-AGNEFLVVHNGVITNYEVLKETLIRHGFTFES  154 (636)
Q Consensus        76 ~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~-~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~  154 (636)
                       +.++..+..      .++++.++|||+||||.|..+..|+|||... .+++|+|+|||+|.|+.+++..     ..+.+
T Consensus        57 -~~~~~~~~~------~~~~s~~~igHvR~AT~G~~~~~N~hPf~~~~~~~~~~f~HNG~i~n~~~l~~~-----~~~~g  124 (253)
T d1te5a_          57 -SEVARLVQR------FPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGF-----YRPVG  124 (253)
T ss_dssp             -CHHHHHHHH------SCCEEEEEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCCCCCS-----SCCSS
T ss_pred             -CHHHHHHhh------CcCCCcEEEEEeeeccCCCCccccCCceEEEcCCCCEEEEEeeeEechhhhhhh-----hcccC
Confidence             123443221      2467999999999999999999999999765 4678999999999999887654     34568


Q ss_pred             CCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcCC
Q 006659          155 ETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRGS  218 (636)
Q Consensus       155 ~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~~  218 (636)
                      .||||++++++...+.+.... ......+.++++++.+.+.+.+++.++..+ ++.+++.++.+
T Consensus       125 ~tDse~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~~d-g~~l~a~~~~~  186 (253)
T d1te5a_         125 ETDSEAAFCDLLNRVRRAFPE-PVPVEVLLPVLISACDEYRKKGVFNALISD-GDWLFTFCSSK  186 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHHHTTBCCEEEEES-SSCEEEECSSC
T ss_pred             CCccchhHHHHHHHHHhcccc-CCchHHHHHHHHHHHHhhccceEEEEEccC-CCEEEEEecCC
Confidence            999999999999887653211 011113455666677777665554444433 67888876653

>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein AF1796
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.79  E-value=1.5e-18  Score=163.87  Aligned_cols=146  Identities=23%  Similarity=0.190  Sum_probs=113.9

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e  381 (636)
                      +.++.++++++++.|.++++|+++|+|+|+.+|.++.+.|.++ +.++......+    ...++++|++|++|+||+|.+
T Consensus        23 ~~ld~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~~~~----~~~i~~~Dl~i~iS~sG~t~~   97 (192)
T d1vima_          23 NHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHL-GYTVYVVGETV----TPRITDQDVLVGISGSGETTS   97 (192)
T ss_dssp             HHCCHHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHT-TCCEEETTSTT----CCCCCTTCEEEEECSSSCCHH
T ss_pred             HhcCHHHHHHHHHHHHcCCcEEEEecCcchhhhhhhhhhhccc-ccccccccccc----cccccccccceeccccccchh
Confidence            3466788999999999999999999999999999999988885 66666654322    345789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccc-------c--chhhHHHHHHHHHHHHHHHhcCCCCc
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGV-------A--STKAYTSQIVVMAMLALAIGGDTIST  452 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~-------~--~t~s~~~~~~~l~lL~~~~~~~~~~~  452 (636)
                      ++++++.||++|+++|+||++.+|||+++||++|.++...+...       .  .|.+-+++++++..|+..+...++..
T Consensus        98 ~i~~~~~ak~~g~~vI~IT~~~~s~l~~~ad~~l~i~~~~~~~~~~~~~~~~p~~t~~~~~~~~~ld~l~~~l~~~~~~~  177 (192)
T d1vima_          98 VVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLT  177 (192)
T ss_dssp             HHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHhhcccceeeeeccccccccccceEEEecCCccccccccccCccccchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999987532211       1  12222334445555666655544433

>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Probable 3-hexulose-6-phosphate isomerase MJ1247
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.76  E-value=9.2e-18  Score=156.16  Aligned_cols=143  Identities=13%  Similarity=0.135  Sum_probs=113.6

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHHHHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETADTLQAL  386 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e~i~al  386 (636)
                      ++++++++.|.++++|+++|+|.|+.+|..++..+.++ |+++.......    ...++++|++|++|+||+|+++++++
T Consensus        25 ~~i~~~~~~i~~a~~I~~~G~G~S~~~a~~~~~~l~~l-g~~~~~~~~~~----~~~~~~~Dl~I~iS~sG~t~~~i~~~   99 (177)
T d1jeoa_          25 NKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHL-GFKSYFVGETT----TPSYEKDDLLILISGSGRTESVLTVA   99 (177)
T ss_dssp             HHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHT-TCCEEETTSTT----CCCCCTTCEEEEEESSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCeEEEEEccHHHHHHHHHHHHHHhc-CCccccccccc----ccccCCCCeEEEeccccchHHHHHHH
Confidence            46889999999999999999999999999999988886 66665543322    34578999999999999999999999


Q ss_pred             HHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccc-hhhHHHHHHHHHHHHHHHhcCCCCcHHH
Q 006659          387 EYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVAS-TKAYTSQIVVMAMLALAIGGDTISTQAR  455 (636)
Q Consensus       387 ~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~-t~s~~~~~~~l~lL~~~~~~~~~~~~~~  455 (636)
                      +.||++|+++|+||++ .+++++.||++|.++..++...+. +.+.+++++++.+|...+....+.+.++
T Consensus       100 ~~ak~~g~~vI~IT~~-~~~l~~~aD~~l~~~~~~~~~~~~~~~s~~~~l~~~d~l~~~l~~~~~~~~~~  168 (177)
T d1jeoa_         100 KKAKNINNNIIAIVCE-CGNVVEFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVIAEIMKRLNLDESE  168 (177)
T ss_dssp             HHHHTTCSCEEEEESS-CCGGGGGCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHcCCceeEEecC-CCcHHHhcCceEEEeecccccccCchHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence            9999999999999986 688999999999988765443322 3333456666777777776665544443

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=3.2e-18  Score=160.77  Aligned_cols=117  Identities=16%  Similarity=0.152  Sum_probs=101.9

Q ss_pred             ccccccchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccCCCCCCcEEEEEcCCCCCHH
Q 006659          302 KSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQAPIYREDTAVFVSQSGETAD  381 (636)
Q Consensus       302 ~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dlvI~iS~SG~t~e  381 (636)
                      ..++.++++++++.|.++++|+++|+|+|+.+|.++++.+.++ ++.+...  ++.  ....++++|++|++|.||+|++
T Consensus        20 ~~i~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~--~d~--~~~~~~~~Dl~I~iS~sG~t~~   94 (186)
T d1m3sa_          20 AYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHM-GFNAHIV--GEI--LTPPLAEGDLVIIGSGSGETKS   94 (186)
T ss_dssp             TTCCHHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHT-TCCEEET--TST--TCCCCCTTCEEEEECSSSCCHH
T ss_pred             HhcCHHHHHHHHHHHHcCCeEEEEECcHHHHHHHHHHHHHHhc-cCCCCcC--Chh--hcccCCCCCEEEEecCccchhh
Confidence            3566788999999999999999999999999999999988885 5665543  232  2345789999999999999999


Q ss_pred             HHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcc
Q 006659          382 TLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEI  423 (636)
Q Consensus       382 ~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~  423 (636)
                      ++++++.||++|+++|+||++.+|||+++||++|.++..++.
T Consensus        95 ~i~~~~~ak~~g~~iI~IT~~~~s~La~~ad~~i~i~~~~~~  136 (186)
T d1m3sa_          95 LIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKD  136 (186)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC
T ss_pred             hHHHHHHHHHCCCCEEEEecCCCchhhHhCCEEEEeCCCccc
Confidence            999999999999999999999999999999999999886544

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.74  E-value=3.3e-19  Score=168.10  Aligned_cols=101  Identities=19%  Similarity=0.265  Sum_probs=88.3

Q ss_pred             cceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhcccc
Q 006659           96 IHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEE  175 (636)
Q Consensus        96 ~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~  175 (636)
                      ..++++|+|..+...   .++||+...   ..++||||+|||+.+|+++|   |+.+.+.||+|+|++++.    +||  
T Consensus        43 ~~~~l~h~~~~~~~~---~~~qp~~~~---~~~~v~NGeIyN~~eL~~~l---g~~~~s~sDtEvil~l~~----~~G--  107 (206)
T d1jgta2          43 LAATLVHAPSVAPDR---AVARSLTGA---PTTAVLAGEIYNRDELLSVL---PAGPAPEGDAELVLRLLE----RYD--  107 (206)
T ss_dssp             CEEEEEECTTSCGGG---GEEEECSSS---SEEEEEEEEESCHHHHHHTS---CSSCCCSSHHHHHHHHHH----HHG--
T ss_pred             cceeecccccccCCc---ccCcccCCC---CEEEEEEEEecCHHHHHHHh---CCCCCCCCchHHHHHHhh----hhC--
Confidence            458999999886543   368999755   68999999999999999998   677889999999999998    565  


Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          176 EGDQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                                  .+++++|+|+|+|+++|   .++++++||+   +|||++..+
T Consensus       108 ------------~~~l~~l~G~Fa~vi~d---~~~l~laRD~~G~KPLyy~~~~  146 (206)
T d1jgta2         108 ------------LHAFRLVNGRFATVVRT---GDRVLLATDHAGSVPLYTCVAP  146 (206)
T ss_dssp             ------------GGGGGTCCEEEEEEEEE---TTEEEEEECTTCCSCCEEEEET
T ss_pred             ------------HHHHHHHHhhhheeeee---cceEEEEEecccceeEEEEEcC
Confidence                        57899999999999999   5799999999   899999988

>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]

Probab=99.67  E-value=1.1e-15  Score=157.19  Aligned_cols=189  Identities=14%  Similarity=0.182  Sum_probs=130.1

Q ss_pred             CCCcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH
Q 006659           60 GCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE  139 (636)
Q Consensus        60 ~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~  139 (636)
                      +.+.-|||+.+.+++|. ++|.++.      +..+.+.+++.|.|++||+.+++..+|||.       .++|||+|....
T Consensus       169 SsrTIVYKGml~~~ql~-~fy~DL~------d~~~~s~~al~H~RFSTNT~PsW~lAQPfR-------~laHNGEINTi~  234 (430)
T d1ofda3         169 SCRTIVYKGMVRSIILG-EFYLDLK------NPGYTSNFAVYHRRFSTNTMPKWPLAQPMR-------LLGHNGEINTLL  234 (430)
T ss_dssp             ESSEEEEEESSCHHHHH-HHBHHHH------CTTCCBSEEEEEECCCSSSCCCGGGSSCCS-------SEEEEECCTTHH
T ss_pred             ccCeEEEeccccHHHHH-HHhhccc------CcccEEEEEEEEEEEecCCCCcchhcCccc-------cccCCccccccc
Confidence            67788899999999887 8888765      256789999999999999999999999997       489999998654


Q ss_pred             HHHH-----------------HHHhCCCcc-ccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHHH----------
Q 006659          140 VLKE-----------------TLIRHGFTF-ESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEVM----------  191 (636)
Q Consensus       140 ~l~~-----------------~l~~~g~~~-~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  191 (636)
                      -.++                 ++...+... .+.|||+.+-+.++.... .|       .++.+|+..++          
T Consensus       235 GN~nwm~are~~l~s~~~~~~~~~~l~pi~~~~~SDSa~lDn~lElL~~-~g-------~~l~~a~~mliPeaw~~~~~m  306 (430)
T d1ofda3         235 GNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVR-TG-------RSPLEAAMILVPEAYKNQPAL  306 (430)
T ss_dssp             HHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHH-TT-------CCHHHHHHHHSCCCCTTCGGG
T ss_pred             chHHHHHHhhhhcccccccccchhhccCcCCCCccchhhHHHHHHHHHh-cc-------CccHHHHHhhhhhhhcccccc
Confidence            3222                 222222222 468999999999975543 32       34555444333          


Q ss_pred             -----------------HHhhhhhheeEEecCCCCeEEEEEcC---CceEEEec-c----Ccccccccc--------eee
Q 006659          192 -----------------RHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVK-D----GAVSILKFD--------NAK  238 (636)
Q Consensus       192 -----------------~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~-~----~~~~~~~~~--------~~~  238 (636)
                                       +.++|++++++.|   ++.+.+..|+   ||+-+.+. +    .++|..+++        .+.
T Consensus       307 ~~~p~~r~fyey~~~~mEpWDGPA~i~ftd---G~~iga~lDRnGLRP~Ry~~t~d~~~i~aSE~Gv~~~~~~~v~~kgr  383 (430)
T d1ofda3         307 KDYPEISDFHDYYSGLQEPWDGPALLVFSD---GKIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGR  383 (430)
T ss_dssp             TTCHHHHHHHHHHTTTCCCCCSSEEEEEEC---SSEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEE
T ss_pred             CchHHHHHHHHHHHhhhhcccCCEEEEEec---CCEEEEEecCCCCCcceEEEecCCEEEEEeccccccCChhheeeccC
Confidence                             2246999999988   6899999998   99955544 4    355666655        237


Q ss_pred             ccCCCee--e-CCCcccceeeeeccchhhhhcCChHHHHHH
Q 006659          239 GRNGGTY--A-RPASVQRALSILEMEVEQINKGNYEHYMQK  276 (636)
Q Consensus       239 ~~~g~~~--~-~~~~~~~~i~~~~~~~~~~~~~~y~~~m~k  276 (636)
                      |.||++.  + ..|.+   +.--+++.....+.||..|+.+
T Consensus       384 l~PG~m~~vD~~~g~i---~~~~eik~~~~~~~py~~wl~~  421 (430)
T d1ofda3         384 LAPGQMIAVDLAEQKI---LKNYQIKQQAAQKYPYGEWIKI  421 (430)
T ss_dssp             CCTTCEEEEETTTTEE---ECHHHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCcEEEEECCCCeE---CCHHHHHHHHHhcCCHHHHHHH
Confidence            9999993  2 23432   2223333344455677776543

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.66  E-value=3.3e-18  Score=160.02  Aligned_cols=108  Identities=11%  Similarity=-0.012  Sum_probs=87.0

Q ss_pred             eEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChHHHHHHHHhCCCccccCCHhhHHHHHHHHHHhhccccCC
Q 006659           98 AGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYEVLKETLIRHGFTFESETDTEVIPKLAKFVFDKANEEEG  177 (636)
Q Consensus        98 ~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~~l~~~l~~~g~~~~~~tDsE~i~~l~~~~~~~~~~~~~  177 (636)
                      ...+|.|++...- .....||+......++++++||+|||+.+||++|...++.+.+.||||++++++.    .||    
T Consensus        22 ~~~~~~rLsi~~l-~~~~n~~~~~~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvll~~~~----~~G----   92 (204)
T d1q15a2          22 FDGKGEALSNGYL-FIEQNGHYQKCEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFT----RLG----   92 (204)
T ss_dssp             SCEEEEEETTEEE-EEETTCCEEEEECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHH----HHC----
T ss_pred             hcchhhhhcchhh-hhcccCCCCcccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHHHHHHH----HHH----
Confidence            4466888887643 2334555443214489999999999999999999988888999999999999998    676    


Q ss_pred             CCCCCHHHHHHHHHHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc
Q 006659          178 DQPVTFSQVVVEVMRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD  226 (636)
Q Consensus       178 ~~~~~~~~~~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~  226 (636)
                                .+++++|+|+|||+++++  .++++++||+   +||++....
T Consensus        93 ----------~~~l~~l~G~Faf~i~~~--~~~l~l~RD~~G~KPLyY~~~~  132 (204)
T d1q15a2          93 ----------ANALALAEGDFCFFIDEP--NGELTVITESRGFSPVHVVQGK  132 (204)
T ss_dssp             ----------GGGGGGCCSSEEEEEECT--TSCEEEEECSSSSSCCEEEESS
T ss_pred             ----------HHHHHhhCCceEEEEecC--CceEEEEECCCCccceEEEecC
Confidence                      679999999999998664  4789999999   788877665

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]

Probab=99.66  E-value=9.1e-16  Score=158.10  Aligned_cols=160  Identities=17%  Similarity=0.218  Sum_probs=117.6

Q ss_pred             CCCcEEEeecccchhhhhHHHHHHhhhhhccccccccceEEEeeecCCCCCCCCCCCCCcccCCCCcEEEEEcceecChH
Q 006659           60 GCPPLVFRQEGNIESLVKSVYEEVAETELNLEESFSIHAGIAHTRWATHGEPAPRNSHPQTSGAGNEFLVVHNGVITNYE  139 (636)
Q Consensus        60 ~~~~~~~k~~g~~~~l~~~~f~~~~~~~~~~~~~~~~~~~igH~R~aT~g~~~~~n~qPf~~~~~~~~~~~hNG~i~N~~  139 (636)
                      +.+.-|||+.+.+++|. .+|.++.      +..+.+.++++|.||+||+.+++..+|||.       .++|||+|....
T Consensus       173 SsrTIVYKGml~~~ql~-~fy~DL~------d~~~~s~~al~H~RFSTNT~PsW~lAQPFR-------~laHNGEINTi~  238 (422)
T d1ea0a3         173 SARSIIYKGMFLAEQLT-TFYPDLL------DERFESDFAIYHQRYSTNTFPTWPLAQPFR-------MLAHNGEINTVK  238 (422)
T ss_dssp             ESSEEECCBSSCGGGHH-HHCGGGG------STTCCBSEEEEEECCCSCSCCCSTTSSCCS-------SEEEEECCTTHH
T ss_pred             ccceeeeeccccHHHHH-hhhhccc------CcccEEEEEEEEeeeeccCCCchhhcCcee-------eecCCCchhhhh
Confidence            45566899999999887 7887764      356789999999999999999999999997       589999998776


Q ss_pred             HHHHHHHhC-----------------CCccccCCHhhHHHHHHHHHHhhccccCCCCCCCHHHHHHHH------------
Q 006659          140 VLKETLIRH-----------------GFTFESETDTEVIPKLAKFVFDKANEEEGDQPVTFSQVVVEV------------  190 (636)
Q Consensus       140 ~l~~~l~~~-----------------g~~~~~~tDsE~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------  190 (636)
                      -.++-+..+                 .....+.|||+.+-++++.... .|       .++.+|+..+            
T Consensus       239 gN~nwm~are~~~~s~~~~~~~~~l~pii~~~~SDSa~lDn~lElL~~-~G-------~sl~~a~~mliP~aw~~~~~m~  310 (422)
T d1ea0a3         239 GNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVR-AG-------RTAPMVKMMLVPQALTSSQTTP  310 (422)
T ss_dssp             HHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHH-TT-------CCHHHHHHHHSCCCCC---CCC
T ss_pred             hhHHHHHHhhhhccccccccchhhhhcccCCCCccchhHHHHHHHHHH-cC-------CcHHHHHHhhchhhhhcccccc
Confidence            555333221                 1122467999999999985543 22       3344443332            


Q ss_pred             -------------HHHhhhhhheeEEecCCCCeEEEEEcC---CceEEEecc-----Ccccccccc--------eeeccC
Q 006659          191 -------------MRHLEGAYALIFKSQHYPNELIACKRG---SPLLLGVKD-----GAVSILKFD--------NAKGRN  241 (636)
Q Consensus       191 -------------~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~pL~~G~~~-----~~~~~~~~~--------~~~~~~  241 (636)
                                   ++..+|++++++-|   ++.+.+..|+   ||+-+++..     .++|..+++        .+.|.|
T Consensus       311 ~~~r~fyey~~~~~epwdGPA~i~ftd---g~~~ga~lDRnGLRP~ry~~t~d~~~i~aSE~Gv~~~~~~~v~~kgrl~P  387 (422)
T d1ea0a3         311 DNHKALIQYCNSVMEPWDGPAALAMTD---GRWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKIDETQVIEKGRLGP  387 (422)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSEEEEECS---SSEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCCGGGEEEEEECCT
T ss_pred             HHHHHHHHHHHhhccccCCCeEEEEec---CCEEEEEecCCCCCcceEEEecCCEEEEEeccccccCCHHHeeeccCCCC
Confidence                         23458999999988   6799999998   999777654     455655554        237999


Q ss_pred             CCe
Q 006659          242 GGT  244 (636)
Q Consensus       242 g~~  244 (636)
                      |++
T Consensus       388 G~~  390 (422)
T d1ea0a3         388 GEM  390 (422)
T ss_dssp             TCE
T ss_pred             Cce
Confidence            999

>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein HI0754
species: Haemophilus influenzae [TaxId: 727]

Probab=99.62  E-value=4e-15  Score=144.10  Aligned_cols=169  Identities=20%  Similarity=0.197  Sum_probs=122.3

Q ss_pred             HHHHHHHhcHHHHHHHhhccccccCCcccccccccchHHHHHHHcCCCeEEEEeechhHHHHH-HHHHHHHHhcC--CcE
Q 006659          273 YMQKEIHEQPESLTTTMRGRLIRGGSCKAKSVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAAL-AARPILEELSD--LPV  349 (636)
Q Consensus       273 ~m~keI~eqp~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~I~i~G~G~S~~aa~-~~~~~~~~~~~--~~~  349 (636)
                      -+++.+.++...+.+.+...+...         ...++.+++.+++..|||++|+|+|+..|. .+..+...+.-  -.+
T Consensus        23 ~il~~i~~ed~~v~~av~~~l~~I---------~~av~~i~~~l~~gGrl~y~G~GtSgrla~~dA~E~~ptf~~~~~~v   93 (248)
T d1nria_          23 EIVRLMNEEDKLVPLAIESCLPQI---------SLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMV   93 (248)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHH---------HHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSE
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCeEEEEecCccchHHHHHHHHcCCccCCCchhe
Confidence            366777665444444443322211         133466677789999999999999998774 45566666532  111


Q ss_pred             EEe-eccch------------------hcccCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc
Q 006659          350 TME-IASDL------------------VDRQAPIYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK  410 (636)
Q Consensus       350 ~~~-~~~e~------------------~~~~~~~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~  410 (636)
                      ... ...+.                  ......++++|++|+||.||+|+.++.+++.||++|+++|+||+++++++.+.
T Consensus        94 ~~~iagg~~al~~~~e~~ed~~~~~~~~l~~~~~~~~DvvIgISaSG~Tp~vl~al~~Ak~~Ga~ti~i~~n~~s~l~~~  173 (248)
T d1nria_          94 KGIIAGGECAIRHPVEGAEDNTKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEI  173 (248)
T ss_dssp             EEEETTCTHHHHSCCTTGGGCTTHHHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHH
T ss_pred             eeeeccChHHHHhhhhhccccHHHHHHHHHhcCCCcccEEEEEecCCCccchHHHHHHHHhcCcceEEEecCCchhcccc
Confidence            211 11110                  01122368999999999999999999999999999999999999999999999


Q ss_pred             cCeeEEcCCCCcccc--cchhhHHHHHHHHHHHHHHHhcCCC
Q 006659          411 THCGVHINAGAEIGV--ASTKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       411 ad~~l~~~~~~e~~~--~~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      +|+.|.+..|+|...  ...++.++|.++|++|....+-..+
T Consensus       174 ad~~I~~~~GpEv~~gstr~kagtaqK~iLn~isT~~mi~lG  215 (248)
T d1nria_         174 ADIAIETIVGPEILTGSSRLKSGTAQKMVLNMLTTASMILLG  215 (248)
T ss_dssp             SSEEEECCCCSCSSTTCTTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceeeeeccChHHhhcccchhhhHHHHHHHHHHHHHHHHHhh
Confidence            999999999999644  3459999999999999877654433

>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Vibrio cholerae [TaxId: 666]

Probab=99.45  E-value=6.6e-13  Score=124.03  Aligned_cols=111  Identities=18%  Similarity=0.199  Sum_probs=81.9

Q ss_pred             hHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHH-Hhc----CCcEEEeeccc--------------hhc-ccCCCCCCc
Q 006659          309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILE-ELS----DLPVTMEIASD--------------LVD-RQAPIYRED  368 (636)
Q Consensus       309 l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~-~~~----~~~~~~~~~~e--------------~~~-~~~~~~~~d  368 (636)
                      .+.+++.+++.++||++|+|+|+..|..+...+. .+.    ..+........              +.. .....+++|
T Consensus        34 a~~i~~~~~~~~kI~~~G~GgSa~~A~h~a~~~~~~~~~~~~~~~~~~~~~~~~~ta~~nd~~~~~~~~~~l~~~~~~gD  113 (191)
T d1x94a_          34 AKLIADSFKQGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPGIAISDPSHLSCVSNDFGYDYVFSRYVEAVGAKGD  113 (191)
T ss_dssp             HHHHHHHHTTTCCEEEECSSSHHHHHHHHHHHHHHHHCTTCSSCSEEEC---------------CCHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCcccHhHHhHhccccccccccccceecccchhHHHHhhcccchHHHHHHHHHHhCCCCC
Confidence            3445556788999999999999887765544332 221    22332221100              000 011247999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCC
Q 006659          369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINA  419 (636)
Q Consensus       369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~  419 (636)
                      ++|++|.||+|++++++++.||++|++||+||+..+++|++.+|+.|.++.
T Consensus       114 vli~iS~SG~s~~ii~a~~~Ak~~g~~~i~it~~~~~~l~~~~D~~I~vps  164 (191)
T d1x94a_         114 VLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLADVEIRVPH  164 (191)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTTSSEEEEESC
T ss_pred             EEEEEecCCccccchhhHHHHHhCCCeEEEEecCCCCcccccCCEEEEeCC
Confidence            999999999999999999999999999999999999999999999999875

>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Campylobacter jejuni [TaxId: 197]

Probab=99.21  E-value=2.1e-11  Score=112.87  Aligned_cols=111  Identities=20%  Similarity=0.249  Sum_probs=84.0

Q ss_pred             HHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcC-----CcEEEeecc---------ch------hc-ccCCCCCCc
Q 006659          310 KDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSD-----LPVTMEIAS---------DL------VD-RQAPIYRED  368 (636)
Q Consensus       310 ~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~-----~~~~~~~~~---------e~------~~-~~~~~~~~d  368 (636)
                      +.+.+.+.+.++|+++|.|+|...|..+..-|....+     +++......         ++      .. .....+++|
T Consensus        33 ~~i~~~l~~ggkI~~~GnGgSa~~A~h~a~el~~~~~~~r~~l~~i~l~~~~a~~ta~~nd~~~e~~f~~ql~~~~~~gD  112 (188)
T d1tk9a_          33 ELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNEKD  112 (188)
T ss_dssp             HHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHcCCEEEEECCCCcchhhhHHHHhhcCCccccccccccccCCCccccccccccccCHHHHHHHHHHHhcCCCc
Confidence            4445567889999999999998877666555543222     333332111         11      00 112347999


Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCC
Q 006659          369 TAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAG  420 (636)
Q Consensus       369 lvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~  420 (636)
                      ++|++|.||+|+.++.+++.||++|++||++|++.++++.+++|+.|.++..
T Consensus       113 ili~iS~SG~S~nii~a~~~Ak~~g~~ti~ltg~~~~~l~~~~D~~i~i~s~  164 (188)
T d1tk9a_         113 VLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSD  164 (188)
T ss_dssp             EEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred             EEEEecCCCCCchhHHHHHHHHhhcceEEEEeCCCCchhHHhCCEEEEECCC
Confidence            9999999999999999999999999999999999999999999999988763

>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.15  E-value=6.7e-11  Score=109.95  Aligned_cols=112  Identities=21%  Similarity=0.214  Sum_probs=82.2

Q ss_pred             hHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhc-----CCcEEEeecc---------ch------h-cccCCCCCC
Q 006659          309 LKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELS-----DLPVTMEIAS---------DL------V-DRQAPIYRE  367 (636)
Q Consensus       309 l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~-----~~~~~~~~~~---------e~------~-~~~~~~~~~  367 (636)
                      .+.+++.+++.++|+++|.|+|...|.-+..-|.+..     .+++......         ++      . ......+++
T Consensus        32 ~~~i~~~~~~~~kif~~GnGgSas~A~h~a~dl~~~~~~~r~~~~~i~l~~~~s~~ta~~Nd~g~~~~f~~ql~~~~~~g  111 (194)
T d1x92a_          32 SLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPG  111 (194)
T ss_dssp             HHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCEEEEECCCccHHHHHHHHHHhhhhccccccccceeecccchhHHHhhccccCHHHHHHHHHHHhcCCC
Confidence            3455566778899999999999887766655554422     2333322100         00      0 011234699


Q ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccc---cCeeEEcCCC
Q 006659          368 DTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARK---THCGVHINAG  420 (636)
Q Consensus       368 dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~---ad~~l~~~~~  420 (636)
                      |++|++|.||+|+.++.+++.||++|+++|+||+..++.+.++   +|+.|.++..
T Consensus       112 Dvli~iS~SG~S~nvi~a~~~Ak~~g~~~i~ltG~~gg~~~~l~~~~Di~i~ips~  167 (194)
T d1x92a_         112 DVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK  167 (194)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred             cEEEEEecCCCcchhHHHHHHHHhcCceEEEEEecCCchHhhhccCCCEEEEeCCC
Confidence            9999999999999999999999999999999999988887776   7999988763

>d1wiwa_ c.80.1.1 (A:) Glucose-6-phosphate isomerase-like protein TTHA1346 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Glucose-6-phosphate isomerase-like protein TTHA1346
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=2.8e-10  Score=111.10  Aligned_cols=211  Identities=13%  Similarity=0.104  Sum_probs=134.6

Q ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccC---e-eEEcCCCCcccccchhhHHHHHHHHH
Q 006659          364 IYREDTAVFVSQSGETADTLQALEYASENGALCVGITNTVGSAIARKTH---C-GVHINAGAEIGVASTKAYTSQIVVMA  439 (636)
Q Consensus       364 ~~~~dlvI~iS~SG~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad---~-~l~~~~~~e~~~~~t~s~~~~~~~l~  439 (636)
                      -++++.+++.|          +.+.++++|+++|+||+  ++++.+.+.   . ++..+.+     ....++...+    
T Consensus        60 ~~~g~~~~~~s----------a~~~a~~~ga~ivaita--Gg~l~~~a~~~~~~v~~~p~~-----~~Praa~~~l----  118 (284)
T d1wiwa_          60 GEEGTLFLLEG----------GYDLGEAAGMALLAETG--RARVVRVGFRPGVEVHIPPSP-----LAPYRYLRFL----  118 (284)
T ss_dssp             CSSSEEEEEEC----------SSCTTSCSTTC--CCCT--TCEEEEEESSTTCSEECCCCT-----THHHHHHHHH----
T ss_pred             cCCCCeeeecc----------hHHHHHhcCCeEEEEcC--CcHHHHHHhhcCCcEeccCCC-----CCcHHHHHHH----
Confidence            35678888877          33477889999999998  788877754   2 2222221     1223333221    


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHhhhHHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccc
Q 006659          440 MLALAIGGDTISTQARREAIIDGLCDLPNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALM  518 (636)
Q Consensus       440 lL~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~  518 (636)
                        .+.  ..   ..++.++..+.|++..+.+....+. ++.++++|.++.+.-.+++ |. ...++|+.++..+.|++++
T Consensus       119 --~l~--~~---~~~d~~~~~~~L~~~a~r~~p~~e~~~NPAK~LA~~L~g~iPvIy-g~-~~~~~A~R~k~qlnENaK~  189 (284)
T d1wiwa_         119 --LLA--TG---REEVLRSVDEALLEERRRLGPEVPVEENPAKFLAYTLLERLPLFY-SP-LFRPLEGAVQTLFARVAKS  189 (284)
T ss_dssp             --HHH--TT---CHHHHHHHHHHHHHHHTTTSTTSCGGGCHHHHHHHHHTTSEEEEE-CT-TCTHHHHHHHHHHHHTTCC
T ss_pred             --HHH--hc---cHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHhCCCCEEE-cC-cchHHHHHHHHHHHHHhCC
Confidence              111  11   2345555555555554444333333 7889999999988766666 53 4678999999999999999


Q ss_pred             cccccccccccccccccccCC----CCeEEEEeCCcchHHHHHHHHH-HHhcCCeEEEEecCCCCcCCCCCCcceEEEcC
Q 006659          519 HSEGILAGEMKHGPLALVDEN----LPILVIATRDACFSKQQSVIQQ-LHARKGRLIVMCSKGDAASIFPGGSCRVIEVP  593 (636)
Q Consensus       519 ~a~~~~~~Ef~HGp~~~~~~~----~~vi~l~~~~~~~~~~~~~~~~-~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p  593 (636)
                      +|....++|+.| -+..++.+    ..+.++.-.++.  +. ++.++ +++++..+..|..+++                
T Consensus       190 lA~~~~lPE~nh-eivgwe~~~~~~~~l~vv~l~d~~--~~-~i~reil~~~~~~v~ev~~~G~----------------  249 (284)
T d1wiwa_         190 LSLTPPPSALEF-FLVGLEARHEQGDPLAAVLLGPGE--EA-ALAKEILESRVDALAEVPATGA----------------  249 (284)
T ss_dssp             CCBCCCSSHHHH-HHHTTSSCGGGGTTEEEEEESCSH--HH-HHHHHHHTTTSSEEEEECCCSS----------------
T ss_pred             cccccCCchhhh-hhhhhcCcccccCceEEEEecCcc--hH-HHHHHHHHhcCCceEEEecCCC----------------
Confidence            999999999999 55544422    233333333332  22 23344 4566777777765442                


Q ss_pred             CCCcchhhHHHHH-HHHHHHHHHHHHcCCCCCCCC
Q 006659          594 QVEDCLQPVINIV-PLQLLAYHLTVLRGYNVDQPR  627 (636)
Q Consensus       594 ~~~~~~~~~~~~v-~~q~la~~lA~~~G~~pd~pr  627 (636)
                         ..++.+++++ ...|.++|+|+.+|+||....
T Consensus       250 ---S~Lerl~~LI~lgD~aS~YLAll~GvDP~~v~  281 (284)
T d1wiwa_         250 ---NRLAQVMALWYRMAWTAYYLALLYGVDPGDHG  281 (284)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCC
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence               3566777666 569999999999999998764

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=1.4e-06  Score=79.98  Aligned_cols=151  Identities=12%  Similarity=0.167  Sum_probs=108.4

Q ss_pred             HHHHHHHhc--hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEE
Q 006659          468 NKVREVLKL--DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVI  545 (636)
Q Consensus       468 ~~~~~~~~~--~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l  545 (636)
                      +.+.+..+.  .+.++++++.+...++++++|.|.++.+|.+++.+|...-+ ++..  ..+..+.   .+++++.+|++
T Consensus        13 ~~i~~t~~~i~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~-~~~~--~~d~~~~---~~~~~Dl~I~i   86 (186)
T d1m3sa_          13 NELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGF-NAHI--VGEILTP---PLAEGDLVIIG   86 (186)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTC-CEEE--TTSTTCC---CCCTTCEEEEE
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHcCCeEEEEECcHHHHHHHHHHHHHHhccC-CCCc--CChhhcc---cCCCCCEEEEe
Confidence            344444543  57788899999899999999999999999999999987643 3332  2333332   36788888888


Q ss_pred             EeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc--------hhhH------HHHHHHHHH
Q 006659          546 ATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC--------LQPV------INIVPLQLL  611 (636)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~--------~~~~------~~~v~~q~l  611 (636)
                      ...|.+ ..+.+.++.++++|++++.||+.....+..  .+|.++.+|...+.        ..|+      ..++.++.+
T Consensus        87 S~sG~t-~~~i~~~~~ak~~g~~iI~IT~~~~s~La~--~ad~~i~i~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~l  163 (186)
T d1m3sa_          87 SGSGET-KSLIHTAAKAKSLHGIVAALTINPESSIGK--QADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAV  163 (186)
T ss_dssp             CSSSCC-HHHHHHHHHHHHTTCEEEEEESCTTSHHHH--HCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHHHHHHH
T ss_pred             cCccch-hhhHHHHHHHHHCCCCEEEEecCCCchhhH--hCCEEEEeCCCcccccCCCccccCcchHHHHHHHHHHHHHH
Confidence            766655 556688899999999999999877654321  35778888753221        1121      345567888


Q ss_pred             HHHHHHHcCCCCCCCC
Q 006659          612 AYHLTVLRGYNVDQPR  627 (636)
Q Consensus       612 a~~lA~~~G~~pd~pr  627 (636)
                      ...+.+.+|.++++.+
T Consensus       164 ~~~l~~~~~~~~~~~~  179 (186)
T d1m3sa_         164 ILKLMEKKGLDSETMF  179 (186)
T ss_dssp             HHHHHHHTTCCTTTCC
T ss_pred             HHHHHHHhCcCHHHHH
Confidence            9999999999988765

>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein AF1796
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.38  E-value=1.6e-06  Score=79.99  Aligned_cols=141  Identities=12%  Similarity=0.091  Sum_probs=101.6

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      .+.++++++.+...++++++|.|.++.+|.+++.+|.-. ..++....-.+.     ..+++++.+|++...|.+ ..+.
T Consensus        27 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~~~~~-----~~i~~~Dl~i~iS~sG~t-~~~i   99 (192)
T d1vima_          27 LETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHL-GYTVYVVGETVT-----PRITDQDVLVGISGSGET-TSVV   99 (192)
T ss_dssp             HHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHT-TCCEEETTSTTC-----CCCCTTCEEEEECSSSCC-HHHH
T ss_pred             HHHHHHHHHHHHcCCcEEEEecCcchhhhhhhhhhhccc-cccccccccccc-----ccccccccceeccccccc-hhhH
Confidence            466788888888899999999999999999999998854 445554433332     336788888777766654 5677


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCc-c-------hhh------HHHHHHHHHHHHHHHHHcCCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVED-C-------LQP------VINIVPLQLLAYHLTVLRGYN  622 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~-~-------~~~------~~~~v~~q~la~~lA~~~G~~  622 (636)
                      +.++.++++|.+++.||+.....+..  .+|..+.+|...+ .       +.|      ...++.++.+++.+...+|.+
T Consensus       100 ~~~~~ak~~g~~vI~IT~~~~s~l~~--~ad~~l~i~~~~~~~~~~~~~~~~p~~t~~~~~~~~~ld~l~~~l~~~~~~~  177 (192)
T d1vima_         100 NISKKAKDIGSKLVAVTGKRDSSLAK--MADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLT  177 (192)
T ss_dssp             HHHHHHHHHTCEEEEEESCTTSHHHH--HCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhhcccceeeeecccccccc--ccceEEEecCCccccccccccCccccchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            88999999999999999887654421  3577888885321 1       111      233455678888999999987


Q ss_pred             CCCC
Q 006659          623 VDQP  626 (636)
Q Consensus       623 pd~p  626 (636)
                      +++.
T Consensus       178 ~~~~  181 (192)
T d1vima_         178 EKDL  181 (192)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Probable 3-hexulose-6-phosphate isomerase MJ1247
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.33  E-value=5.6e-06  Score=75.17  Aligned_cols=139  Identities=9%  Similarity=0.083  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHH
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQ  556 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~  556 (636)
                      ++.+.++++.+..+++++++|.|.++.+|.+.+.++... .+++....-.+.     ..++++..+|++...|.+. .+.
T Consensus        24 ~~~i~~~~~~i~~a~~I~~~G~G~S~~~a~~~~~~l~~l-g~~~~~~~~~~~-----~~~~~~Dl~I~iS~sG~t~-~~i   96 (177)
T d1jeoa_          24 KNKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHL-GFKSYFVGETTT-----PSYEKDDLLILISGSGRTE-SVL   96 (177)
T ss_dssp             HHHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHT-TCCEEETTSTTC-----CCCCTTCEEEEEESSSCCH-HHH
T ss_pred             HHHHHHHHHHHHCCCeEEEEEccHHHHHHHHHHHHHHhc-CCcccccccccc-----cccCCCCeEEEeccccchH-HHH
Confidence            355777888888899999999999999999999999866 445554433322     2367888888888777654 456


Q ss_pred             HHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchh------hHHHHHHHHHHHHHHHHHcCCCCCC
Q 006659          557 SVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQ------PVINIVPLQLLAYHLTVLRGYNVDQ  625 (636)
Q Consensus       557 ~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~v~~q~la~~lA~~~G~~pd~  625 (636)
                      +.++.++++|++++.||+...+..   .-+|..+.+|...+.+.      ....++.++.+...+...+|.+.++
T Consensus        97 ~~~~~ak~~g~~vI~IT~~~~~l~---~~aD~~l~~~~~~~~~~~~~~~s~~~~l~~~d~l~~~l~~~~~~~~~~  168 (177)
T d1jeoa_          97 TVAKKAKNINNNIIAIVCECGNVV---EFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVIAEIMKRLNLDESE  168 (177)
T ss_dssp             HHHHHHHTTCSCEEEEESSCCGGG---GGCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHcCCceeEEecCCCcHH---HhcCceEEEeecccccccCchHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence            788999999999999997654422   13577788875333221      1234556789999999999887643

>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS)
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.5e-05  Score=81.16  Aligned_cols=139  Identities=15%  Similarity=0.136  Sum_probs=106.9

Q ss_pred             cchHHHHHHHcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhcccC-CCCCCcEEEEEcCCCCC-HHHHH
Q 006659          307 GGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVDRQA-PIYREDTAVFVSQSGET-ADTLQ  384 (636)
Q Consensus       307 ~~l~~~~~~l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~dlvI~iS~SG~t-~e~i~  384 (636)
                      ..+.+.++.+.+.++++++|.|.++.+|..++-.+..+..+++......||.|.+. .+++++.+|++...|.+ ..+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~  289 (366)
T d1moqa_         210 KRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKS  289 (366)
T ss_dssp             THHHHHHHHHTTCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcceEEecCCCcHHHHHHHHHHHHHHHhHeEEeecHHHhhCCchheecCCceEEEecCCChHHHHHHH
Confidence            34577778889999999999999999999999999998999999999999988764 46888888888766654 56667


Q ss_pred             HHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCC
Q 006659          385 ALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTI  450 (636)
Q Consensus       385 al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~  450 (636)
                      .++..+++|.+++.||+.........+++++.++..++.     -+....+..+.+|+..++..++
T Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~p~~~~~-----l~pl~~~ip~Qlla~~~A~~~G  350 (366)
T d1moqa_         290 NIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEEV-----IAPIFYTVPLQLLAYHVALIKG  350 (366)
T ss_dssp             HHHHTGGGTCCEEEEEEGGGCCCCBTTEEEEEECCCCGG-----GHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCeEEEEecCCccccccCCceEEecCCCchH-----HHHHHHHHHHHHHHHHHHHHhC
Confidence            888999999999999998777777778888877653321     1222233445666666654433

>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Hypothetical protein TM0813
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=2.5e-05  Score=78.19  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             cCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhcCC
Q 006659          488 IAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHARKG  567 (636)
Q Consensus       488 ~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~  567 (636)
                      ...++++++|+|.+|-.|+.++--+...+++++..+...||.|.+...+++++.||++.-.|.+.+ +.+.++.++++|.
T Consensus        37 ~~~~~i~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~lvI~iS~SG~T~e-~i~a~~~a~~~ga  115 (329)
T d1j5xa_          37 NLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTE-VLLANDVLKKRNH  115 (329)
T ss_dssp             --CCEEEEEESTHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHTTCSCCCCSSEEEEEECSSSCCHH-HHHHHHHHHHTTE
T ss_pred             cCCCEEEEEEechHHHHHHHHHHHHHHhcCCCceEEecchhhcccccccCCCCeEEEEecCCCChH-HHHHHHhhhhhhh
Confidence            466799999999999999988888888889999999999999987777888888888877776655 6677888899999


Q ss_pred             eEEEEecCCCCcCCCCCCcceEEEcCCC
Q 006659          568 RLIVMCSKGDAASIFPGGSCRVIEVPQV  595 (636)
Q Consensus       568 ~v~vi~~~~~~~~~~~~~~~~~~~~p~~  595 (636)
                      +++.|++..+..+..  .+|..+.++..
T Consensus       116 ~~i~iT~~~~s~la~--~~d~~i~~~~~  141 (329)
T d1j5xa_         116 RTIGITIEEESRLAK--ESDLPLVFPVR  141 (329)
T ss_dssp             EEEEEESCTTSHHHH--HSSEEEECCCC
T ss_pred             hhhccccccccchhh--cccceeeeccc
Confidence            999999987764421  24677777643

>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Vibrio cholerae [TaxId: 666]

Probab=97.37  E-value=0.0059  Score=55.09  Aligned_cols=130  Identities=15%  Similarity=0.156  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcc-----ccccccccccccc----------ccc------ccc
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVAL-----MHSEGILAGEMKH----------GPL------ALV  536 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~-----~~a~~~~~~Ef~H----------Gp~------~~~  536 (636)
                      +.++.+++.+....++++.|.|.+..+|...+..+.=..+     .++...  .+..+          .-.      ...
T Consensus        32 ~aa~~i~~~~~~~~kI~~~G~GgSa~~A~h~a~~~~~~~~~~~~~~~~~~~--~~~~~~ta~~nd~~~~~~~~~~l~~~~  109 (191)
T d1x94a_          32 AAAKLIADSFKQGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPGIAI--SDPSHLSCVSNDFGYDYVFSRYVEAVG  109 (191)
T ss_dssp             HHHHHHHHHHTTTCCEEEECSSSHHHHHHHHHHHHHHHHCTTCSSCSEEEC-----------------CCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCCCcccHhHHhHhccccccccccccceecc--cchhHHHHhhcccchHHHHHHHHHHhC
Confidence            3355566677888999999999999999988776532222     222221  11110          000      113


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhH--HHHHHHHHHHH
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPV--INIVPLQLLAY  613 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~v~~q~la~  613 (636)
                      +++..+|+|.+.| ....+.+.++.++++|.+++.|+..+...+.  .-+|..+.+|..+ ....+  .-++.+++++-
T Consensus       110 ~~gDvli~iS~SG-~s~~ii~a~~~Ak~~g~~~i~it~~~~~~l~--~~~D~~I~vps~~-~~~~iee~h~~i~h~l~~  184 (191)
T d1x94a_         110 AKGDVLFGLSTSG-NSGNILKAIEAAKAKGMKTIALTGKDGGKMA--GLADVEIRVPHFG-YADRIQEVHIKIIHIIIQ  184 (191)
T ss_dssp             CTTCEEEEEESSS-CCHHHHHHHHHHHHHTCEEEEEEETTCGGGT--TTSSEEEEESCCS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecCC-ccccchhhHHHHHhCCCeEEEEecCCCCccc--ccCCEEEEeCCCC-ccHHHHHHHHHHHHHHHH
Confidence            5778888887755 4566778899999999999999997755442  2367889999643 22222  23444555553

>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: Phosphoglucose isomerase, PGI
domain: Phosphoglucose isomerase, PGI
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.60  E-value=0.0028  Score=65.20  Aligned_cols=107  Identities=21%  Similarity=0.233  Sum_probs=72.0

Q ss_pred             ccchHHHHHHHc-CCCeEEEEeechhHHHHHHHHHHHHHh-----cCCc-EEEe-e---ccchhcccCCC-CCCcEEEEE
Q 006659          306 LGGLKDHLKTIR-RSRRIVFIGCGTSYNAALAARPILEEL-----SDLP-VTME-I---ASDLVDRQAPI-YREDTAVFV  373 (636)
Q Consensus       306 ~~~l~~~~~~l~-~~~~I~i~G~G~S~~aa~~~~~~~~~~-----~~~~-~~~~-~---~~e~~~~~~~~-~~~dlvI~i  373 (636)
                      .+.++++++.++ +.+.|+++|+|+|+-....+...+...     ...+ +... +   +.++......+ .+++++|++
T Consensus        57 l~~i~~~a~~i~~~~~~vV~iGIGGS~LGpk~~~~aL~~~~~~~~~~~~~i~f~~~n~d~~~~~~~l~~l~~~~t~~ivi  136 (442)
T d1c7qa_          57 FSRIKQAAERIRNHSDALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDLSINVI  136 (442)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSSSSCEEEEESSSCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeccHHHHHHHHHHHHHHHHHhhhcccccceEeecCCCCHHHHHHHHhccCCCceeEEEe
Confidence            345677777775 478999999999998888777766432     1222 2221 1   22222111122 367889999


Q ss_pred             cCCCCCHHHHHHHHHHHH----------cCCeEEEEEcCCCCccccccC
Q 006659          374 SQSGETADTLQALEYASE----------NGALCVGITNTVGSAIARKTH  412 (636)
Q Consensus       374 S~SG~t~e~i~al~~ak~----------~g~~vi~IT~~~~s~La~~ad  412 (636)
                      |-||.|.||+...+.+++          ..-.++++|+...++|.+.++
T Consensus       137 SKSg~T~ETl~~~~~~~~~l~~~~~~~~~~~~~~v~t~~~~~~l~~~a~  185 (442)
T d1c7qa_         137 SKSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLAD  185 (442)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSCSHHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHHHHHHhcchhhhhhceeeccccchhhhhhhhh
Confidence            999999999988776643          124678899988999888775

>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: Phosphoglucose isomerase, PGI
domain: Phosphoglucose isomerase, PGI
species: Leishmania mexicana [TaxId: 5665]

Probab=96.37  E-value=0.0072  Score=63.57  Aligned_cols=87  Identities=22%  Similarity=0.226  Sum_probs=59.8

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhcC--CcEEEee---ccchhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHH-
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELSD--LPVTMEI---ASDLVDRQAPIY-REDTAVFVSQSGETADTLQALEYAS-  390 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~--~~~~~~~---~~e~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak-  390 (636)
                      ..+.|+++|+|+|+.....+...+.....  +.+...+   +.++......++ +.+++|++|-||.|.||+..++.+| 
T Consensus       152 ~~~~vv~iGIGGS~LGp~~~~~al~~~~~~~~~~~fvsn~D~~~l~~~l~~Ldp~~Tlfiv~SKSftT~ETl~n~~~~r~  231 (561)
T d1q50a_         152 SIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSARN  231 (561)
T ss_dssp             BCCEEEEECCTHHHHHHHHHHHHTGGGSCSSSEEEEECCSSTHHHHHHHTTSCGGGEEEEEECSSSCCHHHHHHHHHHHH
T ss_pred             cchheeeecCCcchHHHHHHHHHHhhhhcCCceeeecCCccHHHHHHHhccCCccceeEEeccCCccchhHHHHHHHHHH
Confidence            46799999999999888888777765433  3444433   333333333455 5789999999999999998766554 


Q ss_pred             -------HcCC--------eEEEEEcCCC
Q 006659          391 -------ENGA--------LCVGITNTVG  404 (636)
Q Consensus       391 -------~~g~--------~vi~IT~~~~  404 (636)
                             +.|+        ..|+||.+..
T Consensus       232 wl~~~~~~~~~~~~~~~~~h~vaiT~~~~  260 (561)
T d1q50a_         232 ALMSYLKENGISTDGAVAKHFVALSTNTE  260 (561)
T ss_dssp             HHHHHHHHTTCCCTTHHHHHEEEECSCHH
T ss_pred             HHHHHhhhccccchhhhhhhhhhhccchH
Confidence                   3332        4889998643

>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Campylobacter jejuni [TaxId: 197]

Probab=96.13  E-value=0.02  Score=51.31  Aligned_cols=116  Identities=13%  Similarity=0.034  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcc-----cccccc--------------cccccccccccc-cc
Q 006659          478 QEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVAL-----MHSEGI--------------LAGEMKHGPLAL-VD  537 (636)
Q Consensus       478 ~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~-----~~a~~~--------------~~~Ef~HGp~~~-~~  537 (636)
                      +.++.+++.+....+++++|.|.+.+.|.-.+..+.=...     +|+...              ..++.+-..+.. .+
T Consensus        30 ~~~~~i~~~l~~ggkI~~~GnGgSa~~A~h~a~el~~~~~~~r~~l~~i~l~~~~a~~ta~~nd~~~e~~f~~ql~~~~~  109 (188)
T d1tk9a_          30 KVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGN  109 (188)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCEEEEECCCCcchhhhHHHHhhcCCccccccccccccCCCccccccccccccCHHHHHHHHHHHhcC
Confidence            3445566677888999999999999999988888753332     222211              112222223322 35


Q ss_pred             CCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCC
Q 006659          538 ENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVE  596 (636)
Q Consensus       538 ~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~  596 (636)
                      ++..++.|.+.|. ...+.+.++..+++|.+++.++..+......  ..|..+.+|..+
T Consensus       110 ~gDili~iS~SG~-S~nii~a~~~Ak~~g~~ti~ltg~~~~~l~~--~~D~~i~i~s~~  165 (188)
T d1tk9a_         110 EKDVLIGISTSGK-SPNVLEALKKAKELNMLCLGLSGKGGGMMNK--LCDHNLVVPSDD  165 (188)
T ss_dssp             TTCEEEEECSSSC-CHHHHHHHHHHHHTTCEEEEEEEGGGTTHHH--HCSEEEEESCSC
T ss_pred             CCcEEEEecCCCC-CchhHHHHHHHHhhcceEEEEeCCCCchhHH--hCCEEEEECCCC
Confidence            7788888877654 5677889999999999999999876442211  246778888643

>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein HI0754
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.2  Score=46.47  Aligned_cols=154  Identities=13%  Similarity=0.041  Sum_probs=97.2

Q ss_pred             HHHHHHHHhc-hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhcccccccc------------cccccccccc
Q 006659          467 PNKVREVLKL-DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGI------------LAGEMKHGPL  533 (636)
Q Consensus       467 ~~~~~~~~~~-~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~------------~~~Ef~HGp~  533 (636)
                      +..+++.++. +..++.+++.+....+++++|.|.+.-+|.-.|..+.-+...+....            ...|...+..
T Consensus        36 ~~av~~~l~~I~~av~~i~~~l~~gGrl~y~G~GtSgrla~~dA~E~~ptf~~~~~~v~~~iagg~~al~~~~e~~ed~~  115 (248)
T d1nria_          36 PLAIESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNT  115 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEecCccchHHHHHHHHcCCccCCCchheeeeeccChHHHHhhhhhccccH
Confidence            3444444443 45556677778888999999999998888877777776654432211            1111111111


Q ss_pred             c---------cccCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCCCCCCcceEEEcCCCCcc------
Q 006659          534 A---------LVDENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDC------  598 (636)
Q Consensus       534 ~---------~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~------  598 (636)
                      +         .+++++.+|.|...|.+ .-+...++.++++|..++.|++.......  ...|..+.++-.++.      
T Consensus       116 ~~~~~~l~~~~~~~~DvvIgISaSG~T-p~vl~al~~Ak~~Ga~ti~i~~n~~s~l~--~~ad~~I~~~~GpEv~~gstr  192 (248)
T d1nria_         116 KAVLNDLQSIHFSKNDVLVGIAASGRT-PYVIAGLQYAKSLGALTISIASNPKSEMA--EIADIAIETIVGPEILTGSSR  192 (248)
T ss_dssp             THHHHHHHHTTCCTTSEEEEECTTSCC-HHHHHHHHHHHHHTCEEEEEESSTTCHHH--HHSSEEEECCCCSCSSTTCTT
T ss_pred             HHHHHHHHhcCCCcccEEEEEecCCCc-cchHHHHHHHHhcCcceEEEecCCchhcc--cccceeeeeccChHHhhcccc
Confidence            1         14677888888776654 56677888999999999999987654331  124555666533332      


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHcCCCC
Q 006659          599 -LQPVINIVPLQLLAYHLTVLRGYNV  623 (636)
Q Consensus       599 -~~~~~~~v~~q~la~~lA~~~G~~p  623 (636)
                       ......-+.+-+++-......|.--
T Consensus       193 ~kagtaqK~iLn~isT~~mi~lGkv~  218 (248)
T d1nria_         193 LKSGTAQKMVLNMLTTASMILLGKCY  218 (248)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTTSCB
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence             2233445567888888888887643

>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.55  E-value=0.12  Score=46.19  Aligned_cols=118  Identities=17%  Similarity=0.149  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHhcCCCeEEEEeCCCCHHHHHHHHHHHHHhc-----ccccccc--------------ccccccccccc-cc
Q 006659          477 DQEMKVLAKQLIAEQSLLVFGRGYNYATALEGALKVKEVA-----LMHSEGI--------------LAGEMKHGPLA-LV  536 (636)
Q Consensus       477 ~~~~~~~a~~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~-----~~~a~~~--------------~~~Ef~HGp~~-~~  536 (636)
                      ++.+..+++.+....+++++|.|.+.++|.-.+..|.=..     ..|+...              ..++..=..+. ..
T Consensus        29 ~~a~~~i~~~~~~~~kif~~GnGgSas~A~h~a~dl~~~~~~~r~~~~~i~l~~~~s~~ta~~Nd~g~~~~f~~ql~~~~  108 (194)
T d1x92a_          29 EQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALG  108 (194)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHhhhhccccccccceeecccchhHHHhhccccCHHHHHHHHHHHhc
Confidence            3445667777888899999999999999998888775321     2222221              11222222222 23


Q ss_pred             cCCCCeEEEEeCCcchHHHHHHHHHHHhcCCeEEEEecCCCCcCC-CCCCcceEEEcCCC
Q 006659          537 DENLPILVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASI-FPGGSCRVIEVPQV  595 (636)
Q Consensus       537 ~~~~~vi~l~~~~~~~~~~~~~~~~~~~~g~~v~vi~~~~~~~~~-~~~~~~~~~~~p~~  595 (636)
                      +++..++.|.+.|. ...+.+.++.++++|.+++.++..+..... .....|..+.+|..
T Consensus       109 ~~gDvli~iS~SG~-S~nvi~a~~~Ak~~g~~~i~ltG~~gg~~~~l~~~~Di~i~ips~  167 (194)
T d1x92a_         109 QPGDVLLAISTSGN-SANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK  167 (194)
T ss_dssp             CTTCEEEEECSSSC-CHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred             CCCcEEEEEecCCC-cchhHHHHHHHHhcCceEEEEEecCCchHhhhccCCCEEEEeCCC
Confidence            57777888877654 466788999999999999999986543211 01124678899964

>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: Phosphoglucose isomerase, PGI
domain: Phosphoglucose isomerase, PGI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.018  Score=60.48  Aligned_cols=189  Identities=15%  Similarity=0.055  Sum_probs=99.6

Q ss_pred             CCCeEEEEeechhHHHHHHHHHHHHHhcC--CcEEEeeccc---hhcccCCCC-CCcEEEEEcCCCCCHHHHHHHHHHHH
Q 006659          318 RSRRIVFIGCGTSYNAALAARPILEELSD--LPVTMEIASD---LVDRQAPIY-REDTAVFVSQSGETADTLQALEYASE  391 (636)
Q Consensus       318 ~~~~I~i~G~G~S~~aa~~~~~~~~~~~~--~~~~~~~~~e---~~~~~~~~~-~~dlvI~iS~SG~t~e~i~al~~ak~  391 (636)
                      ..+.|+++|+|+|+-....+...+.....  ..+...+..+   +......++ +.+++|++|-||.|.||+..++.+++
T Consensus       147 ~~~~VV~iGIGGS~LGp~~l~~al~~~~~~~~~~~fv~n~D~~~~~~~l~~l~~~~Tlfiv~SKSftT~ET~~n~~~~~~  226 (556)
T d1iata_         147 TITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKE  226 (556)
T ss_dssp             BCCEEEEECCGGGTHHHHHHHHHTGGGCTTCCEEEEECCSSHHHHHHHHTTCCGGGEEEEEECSSSCCHHHHHHHHHHHH
T ss_pred             cceeEEEecCCccchhHHHHHHHhhhhcccceEEEecCCchHHHHHHHHHhcCCcceEEEEecCCCCcHHHHHHHHHHHH
Confidence            46789999999998877777766654432  3444444333   222233344 57899999999999999987776654


Q ss_pred             ----cC-------CeEEEEEcCCCCccccc---cCeeEEcCCCCcccccchhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 006659          392 ----NG-------ALCVGITNTVGSAIARK---THCGVHINAGAEIGVASTKAYTSQIVVMAMLALAIGGDTISTQARRE  457 (636)
Q Consensus       392 ----~g-------~~vi~IT~~~~s~La~~---ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL~~~~~~~~~~~~~~~~  457 (636)
                          .+       ...++||.+ .+.+...   ....+..+..    +...-|..+.+.++  +++.++.      +.++
T Consensus       227 wl~~~~~~~~~~~~~~~avt~~-~~~~~~~g~~~~~if~~~~~----VGGRfSv~SavGL~--~a~~~G~------d~~~  293 (556)
T d1iata_         227 WFLQAAKDPSAVAKHFVALSTN-TTKVKEFGIDPQNMFEFWDW----VGGRYSLWSAIGLS--IALHVGF------DNFE  293 (556)
T ss_dssp             HHHHHHCCGGGHHHHEEEEESC-HHHHHHHTCCGGGEEECCTT----SCGGGCTTTGGGHH--HHHHHCH------HHHH
T ss_pred             HHHHhcCChHhhhhhhhccccc-HHHHHHhhccccceeehccc----ccccccccchhhHH--HHHHhCC------cHHH
Confidence                11       247888886 4444332   2234544431    11222222222221  1222211      1223


Q ss_pred             HHHHHHhhhHHHHHHHHhch--HHHHH----HHHHhcCCCeEEEEeC-CCCHHHHHHHHHHHHHhcccc
Q 006659          458 AIIDGLCDLPNKVREVLKLD--QEMKV----LAKQLIAEQSLLVFGR-GYNYATALEGALKVKEVALMH  519 (636)
Q Consensus       458 ~~~~~l~~l~~~~~~~~~~~--~~~~~----~a~~l~~~~~~~~lG~-G~~~~~A~e~alKl~E~~~~~  519 (636)
                      .+++....+.+.+...-...  +..-.    +.....+.+..+++-. -...........-.+|..+..
T Consensus       294 ~ll~Ga~~md~~f~~~~~~~N~p~~lal~~~~~~~~~~~~~~vilpY~~~L~~f~~w~qQL~mESlGK~  362 (556)
T d1iata_         294 QLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKY  362 (556)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHTSCCCEEEEEESCGGGTTHHHHHHHHHHHHHCCC
T ss_pred             HHHhHHHHHHHHhhccchhhhHHHHHHHHHHHHHHhcCCcceeeeccccccccHHHHHHHHhccCCccc
Confidence            33333333333332211111  11111    2223346655555544 344566677777899999874

>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Glucose-6-phosphate isomerase, conjectural
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.18  E-value=0.4  Score=45.47  Aligned_cols=110  Identities=11%  Similarity=0.017  Sum_probs=67.8

Q ss_pred             HhcCCCeEEEEeCCCCHHHHHHHHHHHHHhccccccccccccccccccccccCCCCeEEEEeCCcchHHHHHHHHHHHhc
Q 006659          486 QLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPILVIATRDACFSKQQSVIQQLHAR  565 (636)
Q Consensus       486 ~l~~~~~~~~lG~G~~~~~A~e~alKl~E~~~~~a~~~~~~Ef~HGp~~~~~~~~~vi~l~~~~~~~~~~~~~~~~~~~~  565 (636)
                      ++.+.++++++|.|.++-.|.-++.-+ +...++...     +.|......++++.+|++.-.|.+.+ +...++.++++
T Consensus        32 ~~~~~~~i~i~G~GgS~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~tlvI~iSqSG~T~E-tl~a~~~a~~~  104 (300)
T d1x9ia_          32 RIEAMPRLYISGMGGSGVVADLIRDFS-LTWNWEVEV-----IAVKDYFLKARDGLLIAVSYSGNTIE-TLYTVEYAKRR  104 (300)
T ss_dssp             ECCCCSEEEEECCHHHHHHHHHHHHHH-HHTTCSSEE-----EEECSSCCCCSSSEEEEECSSSCCHH-HHHHHHHHHHH
T ss_pred             HhcCCCeEEEEEecHHHHHHHHHHHHH-HhcCCCceE-----EeecccCCCCCCeEEEEEcCCCCcHH-HHHHHHHHHhc
Confidence            346778999999999987777665443 333333222     23333334566777777766666655 56678888999


Q ss_pred             CCeEEEEecCCCCcCCCCCCcceEEEcCCCCcchhhHHHHH
Q 006659          566 KGRLIVMCSKGDAASIFPGGSCRVIEVPQVEDCLQPVINIV  606 (636)
Q Consensus       566 g~~v~vi~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v  606 (636)
                      |.+++.+++.+....    ..+..+.++...+.-..+....
T Consensus       105 g~~~i~it~~~~l~~----~~~~~~~i~~~~~~~~a~~~~~  141 (300)
T d1x9ia_         105 RIPAVAITTGGRLAQ----MGVPTVIVPKASAPRAALPQLL  141 (300)
T ss_dssp             TCCEEEEESSTTGGG----SSSCEEECCCCSSGGGGHHHHH
T ss_pred             CcceeeccCCchHHH----hhhcccceeccccceeehHHHH
Confidence            999999998765432    1334556665444333333333

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.40  E-value=0.21  Score=38.98  Aligned_cols=75  Identities=19%  Similarity=0.212  Sum_probs=43.5

Q ss_pred             HcCCCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch---------------hcccCCCCCCcEEEEEcCC-CCC
Q 006659          316 IRRSRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL---------------VDRQAPIYREDTAVFVSQS-GET  379 (636)
Q Consensus       316 l~~~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~---------------~~~~~~~~~~dlvI~iS~S-G~t  379 (636)
                      ++..++|+|+|.|.|...|.  +.++... |..+.-.+..+.               -+....+...|++|.-|.= -++
T Consensus         5 ~~~~~~ihfiGigG~GMs~L--A~~L~~~-G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~~n   81 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGI--AEILLNE-GYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDN   81 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHH--HHHHHHH-TCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTTC
T ss_pred             chhCCEEEEEEECHHHHHHH--HHHHHhC-CCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCCCC
Confidence            46789999999999987554  3344442 555554443211               0112234456666554432 234


Q ss_pred             HHHHHHHHHHHHcCCeEE
Q 006659          380 ADTLQALEYASENGALCV  397 (636)
Q Consensus       380 ~e~i~al~~ak~~g~~vi  397 (636)
                      +|    ++.|+++|.++|
T Consensus        82 pe----l~~A~~~gipii   95 (96)
T d1p3da1          82 PE----LVTSKQKRIPVI   95 (96)
T ss_dssp             HH----HHHHHHTTCCEE
T ss_pred             HH----HHHHHHcCCCEE
Confidence            44    446899999986

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.22  E-value=1.1  Score=33.92  Aligned_cols=70  Identities=13%  Similarity=0.038  Sum_probs=43.1

Q ss_pred             eEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccch---------------hcccCCCCCCcEEEEEcC-CCCCHHHHH
Q 006659          321 RIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDL---------------VDRQAPIYREDTAVFVSQ-SGETADTLQ  384 (636)
Q Consensus       321 ~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~---------------~~~~~~~~~~dlvI~iS~-SG~t~e~i~  384 (636)
                      ||+|+|.|.+...|.  +.++.. .|..+.-.+..+-               -+....+...|++|.-|. +-+++|+  
T Consensus         3 ~ihfiGIgG~GMs~L--A~~L~~-~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~~npel--   77 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAV--ALHEFS-NGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNPEI--   77 (89)
T ss_dssp             EEEEETTTSHHHHHH--HHHHHH-TTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTTCHHH--
T ss_pred             EEEEEeECHHHHHHH--HHHHHh-CCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCcCCCCHHH--
Confidence            799999999988775  344444 3566555443321               012234556777766555 3355654  


Q ss_pred             HHHHHHHcCCeEE
Q 006659          385 ALEYASENGALCV  397 (636)
Q Consensus       385 al~~ak~~g~~vi  397 (636)
                        +.||++|.++.
T Consensus        78 --~~A~~~gIpv~   88 (89)
T d1j6ua1          78 --VRARMERVPIE   88 (89)
T ss_dssp             --HHHHHTTCCEE
T ss_pred             --HHHHHcCCCcc
Confidence              47888999875

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Periplasmic nitrate reductase alpha chain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=88.15  E-value=3.5  Score=42.78  Aligned_cols=121  Identities=13%  Similarity=0.156  Sum_probs=64.8

Q ss_pred             CCcEEEEEcCCCCC--HHHH--HHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCcccccchhhHHHHHHHHHHH
Q 006659          366 REDTAVFVSQSGET--ADTL--QALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAEIGVASTKAYTSQIVVMAML  441 (636)
Q Consensus       366 ~~dlvI~iS~SG~t--~e~i--~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e~~~~~t~s~~~~~~~l~lL  441 (636)
                      .-+++|++...-..  +...  ..++.++++|+++|.|-.. .++.++.||..|.+..|.+.       ..    ++.++
T Consensus       163 ~a~~il~~G~n~~~~~p~~~~~~~~~~~~~~G~kliviDPr-~t~ta~~Ad~~l~irPGtD~-------al----~lam~  230 (597)
T d2jioa2         163 QATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPR-RTNTSRIADMHVAFRPGTDL-------AF----MHSMA  230 (597)
T ss_dssp             TCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSB-CCGGGGGCSEEECCCTTCHH-------HH----HHHHH
T ss_pred             cceEEEEecccccccCCcHHHHHHHHHHhcCCCEEEecCCC-CCchHHhhccccccCCcchH-------HH----hhhhc
Confidence            44666666433211  2122  2245677889999999876 78899999998877554332       11    11122


Q ss_pred             HHHHhcCCCCcHHHH----------------HHHHHHHhh-hHHHHHHHHhc-hHHHHHHHHHhcCCC-eEEEEeCC
Q 006659          442 ALAIGGDTISTQARR----------------EAIIDGLCD-LPNKVREVLKL-DQEMKVLAKQLIAEQ-SLLVFGRG  499 (636)
Q Consensus       442 ~~~~~~~~~~~~~~~----------------~~~~~~l~~-l~~~~~~~~~~-~~~~~~~a~~l~~~~-~~~~lG~G  499 (636)
                      -..+... ..+.+..                +.+.+.+.. -|+.+.++... .+.++++|+.+...+ .+++.|.|
T Consensus       231 ~~ii~~~-l~d~~fv~~~~~~~d~~~~~~~~e~~~~~v~~~tpe~aa~itGv~~~~I~~~a~~~a~~~~~~i~~g~g  306 (597)
T d2jioa2         231 WVIINEE-LDNPRFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSLWCMG  306 (597)
T ss_dssp             HHHHHTT-CSCHHHHHHHEEEECTTSCEECHHHHHHHHGGGCHHHHHHHHTSCHHHHHHHHHHHHHSSSEEEEECHH
T ss_pred             chhhhcc-cchHHHHHHhhcccccccCccchHHHHHHHHhCCHHHHHHHHcCCHHHHhHHHHHHHhccceEEEeccc
Confidence            2222221 1122211                223333333 34555554433 567888888886554 56666765

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Formate dehydrogenase H
species: Escherichia coli [TaxId: 562]

Probab=86.82  E-value=3.4  Score=42.46  Aligned_cols=58  Identities=16%  Similarity=0.120  Sum_probs=41.6

Q ss_pred             CCCCcEEEEEcCCC--CCHHHHHHHHHHHHcCCeEEEEEcCCCCccccccCeeEEcCCCCc
Q 006659          364 IYREDTAVFVSQSG--ETADTLQALEYASENGALCVGITNTVGSAIARKTHCGVHINAGAE  422 (636)
Q Consensus       364 ~~~~dlvI~iS~SG--~t~e~i~al~~ak~~g~~vi~IT~~~~s~La~~ad~~l~~~~~~e  422 (636)
                      +..-|++|.+....  ...-....++.++++|+++|.|-.. .++.+..||..|.+..|.+
T Consensus       164 ~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~G~kvvvidPr-~t~ta~~Ad~~l~i~PGtD  223 (564)
T d2iv2x2         164 IDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPR-KIETARIADMHIALKNGSN  223 (564)
T ss_dssp             GGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSS-CCHHHHTCSEEECCCTTCH
T ss_pred             eecCCEEEECCcccccccchHHHHHHHHHHCCCEEEEECCC-CCchHHHhhhhhhcccCcH
Confidence            34556777765332  2444556677889999999999886 7888999999887755443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=81.97  E-value=1.4  Score=33.59  Aligned_cols=73  Identities=21%  Similarity=0.197  Sum_probs=40.6

Q ss_pred             CCeEEEEeechhHHHHHHHHHHHHHhcCCcEEEeeccchhc---c-cC------------CCCCCcEEEEEcCCCCCHHH
Q 006659          319 SRRIVFIGCGTSYNAALAARPILEELSDLPVTMEIASDLVD---R-QA------------PIYREDTAVFVSQSGETADT  382 (636)
Q Consensus       319 ~~~I~i~G~G~S~~aa~~~~~~~~~~~~~~~~~~~~~e~~~---~-~~------------~~~~~dlvI~iS~SG~t~e~  382 (636)
                      -++|+++|.|.|.   ..+..+|.+. +..+.+.+......   . ..            .+..-|++|. | .| -+..
T Consensus         5 ~K~v~ViGlG~sG---~s~a~~L~~~-g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~-S-PG-i~~~   77 (93)
T d2jfga1           5 GKNVVIIGLGLTG---LSCVDFFLAR-GVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVA-S-PG-IALA   77 (93)
T ss_dssp             TCCEEEECCSHHH---HHHHHHHHHT-TCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEE-C-TT-SCTT
T ss_pred             CCEEEEEeECHHH---HHHHHHHHHC-CCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEE-C-CC-CCCC
Confidence            4789999999995   4445556654 55555554432100   0 00            0112233433 2 22 2233


Q ss_pred             HHHHHHHHHcCCeEEE
Q 006659          383 LQALEYASENGALCVG  398 (636)
Q Consensus       383 i~al~~ak~~g~~vi~  398 (636)
                      -..++.|+++|+++|+
T Consensus        78 ~~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          78 HPSLSAAADAGIEIVG   93 (93)
T ss_dssp             SHHHHHHHHTTCEEEC
T ss_pred             CHHHHHHHHcCCCeEC
Confidence            4577789999999885