Citrus Sinensis ID: 006669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630------
Protein Sequence
MVGGFTLAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQV
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEccccccccccccccccccccccccccHcccccEHHHccccEEEEccccccHHHHHHHHHcccccccccccEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHcHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHEcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mvggftlagagertADSVIEVVGEItgmscgngrgvfkKECVDLVRRIALLKHLLEEIrdsgpldvlpsessssttsLLWWNDLVVALQASKRLLAVACCyssgdssdeAAEKISFQFQCVMWKLEKalgnipydrfdiseEVQEQVVLARSQLKRATerygsmnsrnffhalsqplekEVSITNHEVkakanhvpdtidsechdADQMMNKLERRfssvssevcpsddvvaegqeNSAIKSMAeikkpdvliipadflcpislelmrdpvivatgQTYERSYIQRWIdcgnvtcpktqqklehltltpnYVLRSLISQWCTmhnieqpiglangkikksdgsfrdvsgDVVAIEALVRKLSSRSVEERRAAVAEIRSLskrstdnriiiadaGAIPVLVNllttddvmTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLldenkiiigasGAIPALVDLLqngstrgrKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISrlgaviplteltksgTERAKRKATSLLEHLRKLPQLQQV
Flexible Loop (DISEMBL)
mvggftlagagertaDSVIEVVGEItgmscgngrgvFKKECVDLVRRIALLKHLLEeirdsgpldvlpsessssttslLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRAterygsmnsrNFFHALSQPLEKEVSITNHEVKakanhvpdtiDSECHDADQMMNKLERRfssvssevcpsDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALvrklssrsveerRAAVAeirslskrstdnriiiadagaIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACIsrlgaviplteltksgteraKRKATSLlehlrklpqlqqv
Low Complexity Region (SEG)
MVGGFTLAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPsessssttsLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQV
Disordered region (IsUnstruct)
************RTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEI*******************LLWWNDLVVALQASKRLLAVACCYSSG*****AAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLAR*****************FF***************************************************************************IKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRK************************DNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL****************************
Disordered Region (DISOPRED)
*************TADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSG***************LLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLA*****************************************************************************************************LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCT*************************SGDVVAIEALVRKLSS**VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR*L******
Disordered Region (DISEMBL)
MVGGFTLAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLD***********SLLWWNDLVVALQASKRLLAVACCY********AAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECHDADQMMNKLER**********PSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK*********ATSLLEHLRKLPQLQQV
Disordered Region (DISPRO)
**********GERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLD****ESSSSTTSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAE***************PDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQP***************RDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQ****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGGFTLAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDIxxxxxxxxxxxxxxxxxxxxxYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	636	2.2.26 [Sep-21-2011]
Q9C9A6	628	U-box domain-containing p	yes	no	0.965	0.977	0.659	0.0
Q8GUG9	612	U-box domain-containing p	no	no	0.941	0.978	0.645	0.0
Q9SNC6	660	U-box domain-containing p	no	no	0.941	0.907	0.449	1e-138
Q5VRH9	611	U-box domain-containing p	no	no	0.874	0.909	0.463	1e-134
Q8VZ40	632	U-box domain-containing p	no	no	0.951	0.957	0.442	1e-128
Q9ZV31	654	U-box domain-containing p	no	no	0.938	0.912	0.417	1e-120
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.902	0.827	0.432	1e-119
A2ZLU6	694	Protein spotted leaf 11 O	N/A	no	0.902	0.827	0.432	1e-119
Q681N2	660	U-box domain-containing p	no	no	0.916	0.883	0.389	1e-103
Q9C7R6	729	U-box domain-containing p	no	no	0.577	0.503	0.424	7e-65

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/629 (65%), Positives = 492/629 (78%), Gaps = 15/629 (2%)

Query: 7   LAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDV 66
           +AG G  T DS+I ++ EI  +  GN  G+FKK+C DL RR+ LL HL+EEIRDS P   
Sbjct: 1   MAG-GAITPDSLIGLIAEINEIP-GNF-GLFKKDCSDLARRVGLLTHLIEEIRDSSP--- 54

Query: 67  LPSESSSSTT----SLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVM 122
            PSES +S++       WW+DLVV LQA+KRLL+ A  + + +SSD AA++ISFQFQCV 
Sbjct: 55  -PSESDASSSLNSHECDWWSDLVVGLQAAKRLLSSATSFQARESSDGAAKRISFQFQCVT 113

Query: 123 WKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVS 182
           WKLEKALG++ YDR+DIS+EV+EQV LAR QL+RA +RYGS+NS+ F   LS+P+EK+ S
Sbjct: 114 WKLEKALGDLTYDRYDISDEVREQVELARLQLRRAMQRYGSLNSKKFSSGLSEPMEKDAS 173

Query: 183 ITNHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKS 242
            +N +V  K   +P+T+ S   D  +  +    + SSVS     S D   E  E +  ++
Sbjct: 174 -SNRKVIEKLESIPETVHS-LSDEKKFESPPPWKSSSVSLAFFLSKDGDDERLEKAVTEN 231

Query: 243 MAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL 302
             + +K D L IP DFLCPISLELM+DP IV+TGQTYERS+IQRWIDCGN++CPKTQQKL
Sbjct: 232 SDDSQKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKL 291

Query: 303 EHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLS 362
           E+ TLTPNYVLRSLISQWCT HNIEQP G  NG+ K SDGSFRD+SGD+ AI ALV KLS
Sbjct: 292 ENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLS 351

Query: 363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNL 421
           S+S+E+RR AV+EIRSLSKRSTDNRI+IA+AGAIPVLV LLT+D D  TQE+AVT ILNL
Sbjct: 352 SQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNL 411

Query: 422 SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPAL 481
           SIYE+NK LIMLAGA+ SIV +LRAGSMEARENAAATLFSLSL DENKIIIGASGAI AL
Sbjct: 412 SIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMAL 471

Query: 482 VDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRN-CMVDEALTI 540
           VDLLQ GS RG+KDAATALFNLCIY GNKGRAVRAGI+  L+KMLTDS +  M DEALTI
Sbjct: 472 VDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTI 531

Query: 541 LSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLG 600
           LSVLASN  AK AI++A+ IP LI  L+   PRN+ENAAAILL LCKRDTE L  I RLG
Sbjct: 532 LSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLG 591

Query: 601 AVIPLTELTKSGTERAKRKATSLLEHLRK 629
           AV+PL EL++ GTERAKRKA SLLE LRK
Sbjct: 592 AVVPLMELSRDGTERAKRKANSLLELLRK 620

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/620 (64%), Positives = 484/620 (78%), Gaps = 21/620 (3%)

Query: 17  SVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTT 76
           S+++++ +I  +    G  +FKK+C DL RR+ LL HLLEEIRDS P+D   S SS +  
Sbjct: 10  SLLDLIADIVEIPLNTG--MFKKDCADLTRRVCLLTHLLEEIRDSTPIDSAASSSSEND- 66

Query: 77  SLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDR 136
              WW+DLVV LQA+KRLL+ A  + + DSSD AA++ISFQFQCV WKLEKAL N+PYD 
Sbjct: 67  ---WWSDLVVGLQAAKRLLSTAR-FQARDSSDGAAKRISFQFQCVTWKLEKALSNLPYDL 122

Query: 137 FDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVP 196
           +DIS+EV EQV LARSQL+RA +RYGS+NS  F  ALS+P+E++    ++ +K KA    
Sbjct: 123 YDISDEVGEQVELARSQLRRAMQRYGSLNSNKFSSALSEPMERDG--FSNVIKIKAEEKL 180

Query: 197 DTIDSECH---DADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLI 253
           +++    H   + ++  +   RR SS+S     S D   +  +    K+  E KK D L 
Sbjct: 181 ESVSETLHFGEEEEKQSSPPLRRSSSISLAYYLSKDADTDRLDKMVNKNTDESKKSDKLT 240

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
           IP DFLCP+SLELM+DPVIVATGQTYER+YIQRWIDCGN+TCPKTQQKLE+ TLTPNYVL
Sbjct: 241 IPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVL 300

Query: 314 RSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAV 373
           RSLIS+WC  HNIEQP G  NG+ K S        GD+  I ALV++LSSRS E+RR AV
Sbjct: 301 RSLISRWCAEHNIEQPAGYINGRTKNS--------GDMSVIRALVQRLSSRSTEDRRNAV 352

Query: 374 AEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML 433
           +EIRSLSKRSTDNRI+IA+AGAIPVLVNLLT++DV TQE+A+T +LNLSIYENNK LIM 
Sbjct: 353 SEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMF 412

Query: 434 AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGR 493
           AGA+ SIVQ+LRAG+MEARENAAATLFSLSL DENKIIIG SGAIPALVDLL+NG+ RG+
Sbjct: 413 AGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGK 472

Query: 494 KDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS-RNCMVDEALTILSVLASNPEAKI 552
           KDAATALFNLCIY GNKGRAVRAGI++AL+KML+DS R+ MVDEALTILSVLA+N +AK 
Sbjct: 473 KDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKS 532

Query: 553 AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG 612
           AIVKA+T+P LI +L+T   RN+ENAAAILLSLCKRDTE L  I RLGAV+PL +L+K+G
Sbjct: 533 AIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNG 592

Query: 613 TERAKRKATSLLEHLRKLPQ 632
           TER KRKA SLLE LRK  Q
Sbjct: 593 TERGKRKAISLLELLRKACQ 612

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  492 bits (1267), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 292/649 (44%), Positives = 398/649 (61%), Gaps = 50/649 (7%)

Query: 15  ADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSG-PLDVLPSESSS 73
           A S+I+VV EI  +S  + R   KK C +L RR+ LL  + EEIR+S  P+         
Sbjct: 9   AQSLIDVVNEIAAIS--DYRITVKKLCYNLARRLKLLVPMFEEIRESNEPI--------- 57

Query: 74  STTSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIP 133
           S  +L    +L  A+ ++K  L   C   S        E+++ +   V  KLE++L  IP
Sbjct: 58  SEDTLKTLMNLKEAMCSAKDYLKF-CSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIP 116

Query: 134 YDRFDISEEVQEQVVLARSQLKRATER--------YGSMNS------------------R 167
           Y+  DIS+EV+EQV L  SQ +RA  R        Y  + S                   
Sbjct: 117 YEELDISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKSSDVDAYQPVLERVA 176

Query: 168 NFFHALSQPLEKEVSITNHE-VKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCP 226
              H +  P   + S+  HE V +    V + I+        M+ K+ + F     +   
Sbjct: 177 KKLHLMEIPDLAQESVALHEMVASSGGDVGENIEEMA-----MVLKMIKDFVQTEDDNGE 231

Query: 227 SDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQR 286
              V    + N    + A  K P   +IP DF CPISLE+MRDPVIV++GQTYER+ I++
Sbjct: 232 EQKVGVNSRSNGQTSTAASQKIP---VIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEK 288

Query: 287 WIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRD 346
           WI+ G+ TCPKTQQ L   TLTPNYVLRSLI+QWC  ++IE P   ++ + +K   SF  
Sbjct: 289 WIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKV-SSFSS 347

Query: 347 VSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD 406
              +   IE L+ +L+  + E++R+A  EIR L+KR+ DNR+ IA+AGAIP+LV LL+T 
Sbjct: 348 -PAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTP 406

Query: 407 DVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD 466
           D   QEH+VTA+LNLSI ENNKG I+ AGAIP IVQ+L+ GSMEARENAAATLFSLS++D
Sbjct: 407 DSRIQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVID 466

Query: 467 ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKML 526
           ENK+ IGA GAIP LV LL  G+ RG+KDAATALFNLCIY GNKG+A+RAG+I  L ++L
Sbjct: 467 ENKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLL 526

Query: 527 TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586
           T+  + MVDEAL IL++L+S+PE K  I  +  +P L+  +RTG PRN+ENAAA+L+ LC
Sbjct: 527 TEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLC 586

Query: 587 KRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQ 635
             D ++L    +LG + PL +L  +GT+R KRKA  LLE + +L + Q+
Sbjct: 587 SGDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRLAEQQK 635

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  480 bits (1235), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 286/617 (46%), Positives = 381/617 (61%), Gaps = 61/617 (9%)

Query: 34  RGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQASKR 93
           RG  ++ C DL RR+ LL  LL         D LP+ SSSS+++      L  AL A++ 
Sbjct: 16  RGPLRRPCADLSRRVRLLAPLL---------DHLPASSSSSSST-----PLADALGAARD 61

Query: 94  LLAVACCYSSGDSSDEAAEKISF--QFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLAR 151
           LL        G   D+A    +F  +F  V  ++  AL  +PY+ F + +EVQEQV L  
Sbjct: 62  LLRKT---RDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVH 118

Query: 152 SQLKRATERYGSMNSR----------------NFFHALSQPLE-------KEVSITNHEV 188
           SQ +RA+ R    +++                     +S  L+       K  SI  H +
Sbjct: 119 SQFQRASTRTDPPDTQLSMDLAWALTDNPSDPALLTRISHKLQLHTMADMKNESIALHNM 178

Query: 189 KAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKK 248
                  PD         DQM + L++            D VV E   N A+ + +   K
Sbjct: 179 VISTAGEPDGC------VDQMSSLLKKL----------KDCVVTEDHANDALTTRSASIK 222

Query: 249 PDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLT 308
               IIP +F CPISLELM+DPVIV++GQTYERS IQ+W+D G+ TCPKTQQ L H +LT
Sbjct: 223 HRSPIIPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLT 282

Query: 309 PNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEE 368
           PN+VL+SLISQWC  + IE P    N + KK+  S      D   + +L+ +L S + +E
Sbjct: 283 PNFVLKSLISQWCEANGIELPKNKQNSRDKKAAKS---SDYDHAGLVSLMNRLRSGNQDE 339

Query: 369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK 428
           +RAA  EIR L+KR+ +NRI IA+AGAIP+LVNLL++ D  TQEHAVTA+LNLSI+ENNK
Sbjct: 340 QRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNK 399

Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG 488
             I+ + AIP IV++L+ GSME RENAAATLFSLS++DENK+ IGA+GAIP L++LL +G
Sbjct: 400 ASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDG 459

Query: 489 STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP 548
           S RG+KDAATA+FNLCIY GNK RAV+AGI+  L+  L D    M+DEAL++LS+LA NP
Sbjct: 460 SPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNP 519

Query: 549 EAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
           E KI I ++  IP L+ +++TG PRN+ENAAAIL  LC  DTE        G    L EL
Sbjct: 520 EGKIVIARSEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKEL 579

Query: 609 TKSGTERAKRKATSLLE 625
           +++GT+RAKRKA+S+LE
Sbjct: 580 SETGTDRAKRKASSILE 596

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 284/642 (44%), Positives = 397/642 (61%), Gaps = 37/642 (5%)

Query: 4   GFTLAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGP 63
           G T   + E     +++ V EI+G S  + RG   K   DLVRRI LL    EE+     
Sbjct: 2   GLTNCCSHEELMSRLVDSVKEISGFS--SSRGFIGKIQGDLVRRITLLSPFFEEL----- 54

Query: 64  LDVLPSESSSSTTSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISF--QFQCV 121
           +DV         T    +  + +AL +S  L       + G    +  ++ S   +F+ +
Sbjct: 55  IDVNVELKKDQITG---FEAMRIALDSSLELFR---SVNGGSKLFQLFDRDSLVEKFRDM 108

Query: 122 MWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALS------- 174
             ++E AL  IPY++ ++SEEV+EQV L   Q KRA ER+   + +   H L+       
Sbjct: 109 TVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQ-LSHDLAMAENVMD 167

Query: 175 ------QPLEKEVSITN-HEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPS 227
                 + L +E+ +T   E+K +++ + +   S   D D        R SS+   +   
Sbjct: 168 PDPIILKRLSQELQLTTIDELKKESHAIHEYFLSYDGDPDDCF----ERMSSLLKNLV-- 221

Query: 228 DDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRW 287
           D V  E  +         + +    +IP  F CPISLELM+DPVIV+TGQTYERS IQ+W
Sbjct: 222 DFVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKW 281

Query: 288 IDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDV 347
           +D G+ TCPK+Q+ L H  LTPNYVL+SLI+ WC  + IE P    + +  K  GS    
Sbjct: 282 LDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIGGS-SSS 340

Query: 348 SGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD 407
             D   + +L+ KL++ + E++RAA  E+R L+KR+ DNR+ IA+AGAIP+LV LL++ D
Sbjct: 341 DCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPD 400

Query: 408 VMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE 467
             TQEH+VTA+LNLSI E NKG I+ AGAI  IV++L+ GSMEARENAAATLFSLS++DE
Sbjct: 401 PRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDE 460

Query: 468 NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT 527
           NK+ IGA+GAI AL+ LL+ G+ RG+KDAATA+FNLCIY GNK RAV+ GI+  L ++L 
Sbjct: 461 NKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLK 520

Query: 528 DSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587
           D+   MVDEAL IL++L++N E K AI +A +IPVL+ ++RTG PRN+ENAAAIL  LC 
Sbjct: 521 DAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCI 580

Query: 588 RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629
            + E L     +GA + L ELT++GT+RAKRKA SLLE +++
Sbjct: 581 GNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQQ 622

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  434 bits (1116), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 275/659 (41%), Positives = 403/659 (61%), Gaps = 62/659 (9%)

Query: 13  RTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESS 72
           + A ++I+ + EI  +S  +     KK C +L RR++LL  +LEEIRD+        ESS
Sbjct: 8   KLAQTLIDSINEIASIS--DSVTPMKKHCANLSRRLSLLLPMLEEIRDN-------QESS 58

Query: 73  SSTT--------SLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWK 124
           S           SLL   DL+  +    ++  V              +++  +FQ V   
Sbjct: 59  SEVVNALLSVKQSLLHAKDLLSFVSHVSKIYLVL-----------ERDQVMVKFQKVTSL 107

Query: 125 LEKALGNIPYDRFDISEEVQEQVVLARSQLKRA----------TERY----------GSM 164
           LE+AL  IPY+  +IS+E++EQV L   QL+R+           E Y          GS+
Sbjct: 108 LEQALSIIPYENLEISDELKEQVELVLVQLRRSLGKRGGDVYDDELYKDVLSLYSGRGSV 167

Query: 165 NSRNFFHALSQPLEKEVSITN--HEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSS 222
              +    +++ L+  ++IT+   E  A  + V  +   +  ++ + M+ + ++      
Sbjct: 168 MESDMVRRVAEKLQL-MTITDLTQESLALLDMVSSSGGDDPGESFEKMSMVLKKIKDFVQ 226

Query: 223 EVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERS 282
              P+ D      ++S  KS  + +  D+LI P +F CPISLELM DPVIV++GQTYER 
Sbjct: 227 TYNPNLDDAPLRLKSSLPKSRDDDR--DMLIPPEEFRCPISLELMTDPVIVSSGQTYERE 284

Query: 283 YIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQP----IGLANGKIK 338
            I++W++ G++TCPKTQ+ L    +TPNYVLRSLI+QWC  + IE P    I   + K  
Sbjct: 285 CIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCESNGIEPPKRPNISQPSSKAS 344

Query: 339 KSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPV 398
            S  +  D       IE L+ KL+S+  E+RR+A  EIR L+K++  NR+ IA +GAIP+
Sbjct: 345 SSSSAPDDEHN---KIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPL 401

Query: 399 LVNLLT-TDDVMTQEHAVTAILNLSIYENNKGLIMLA-GAIPSIVQILRAGSMEARENAA 456
           LVNLLT ++D  TQEHAVT+ILNLSI + NKG I+ + GA+P IV +L+ GSMEARENAA
Sbjct: 402 LVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAA 461

Query: 457 ATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRA 516
           ATLFSLS++DENK+ IGA+GAIP LV LL  GS RG+KDAATALFNLCI+ GNKG+AVRA
Sbjct: 462 ATLFSLSVIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRA 521

Query: 517 GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKE 576
           G++  L+++LT+  + MVDE+L+IL++L+S+P+ K  +  A  +PVL+  +R+G PRNKE
Sbjct: 522 GLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKE 581

Query: 577 NAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQ 635
           N+AA+L+ LC  + ++L    +LG +  L E+ ++GT+R KRKA  LL    +    Q+
Sbjct: 582 NSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQK 640

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  430 bits (1106), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 270/625 (43%), Positives = 380/625 (60%), Gaps = 51/625 (8%)

Query: 34  RGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQASKR 93
           R  ++++ + L RRI LL   +EE+R+    +    E   +   L    +  +AL    R
Sbjct: 46  RNAYRRQLLALSRRIRLLGPFVEELRERRRGEGEGEEEERALAPLADALEAALALLRLGR 105

Query: 94  LLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQ 153
             +        DS       +  +FQ V+ +LE+AL +IPY+  DIS+EV+EQV L  +Q
Sbjct: 106 EGSRISLVLERDS-------VMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQ 158

Query: 154 LKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECH-----DADQ 208
           LKRA ER   M    F++ L    +K     N++  A+   +   +  + H     D  Q
Sbjct: 159 LKRAKERI-DMPDDEFYNDLLSVYDK-----NYDPSAELA-ILGRLSEKLHLMTITDLTQ 211

Query: 209 MMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDV----------------- 251
               L    +S   +  P + +         IK   + + PD+                 
Sbjct: 212 ESLALHEMVASGGGQD-PGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRP 270

Query: 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY 311
           + IP +F CPISLELM+DPVIV+TGQTYER+ I++WI  G+ TCP TQQK+    LTPNY
Sbjct: 271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNY 330

Query: 312 VLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDV----SGDVVAIEALVRKLSSRSVE 367
           VLRSLISQWC  + +E P        K+S    +      S +   I+AL+ KL S   E
Sbjct: 331 VLRSLISQWCETNGMEPP--------KRSTQPNKPTPACSSSERANIDALLSKLCSPDTE 382

Query: 368 ERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN 427
           E+R+A AE+R L+KR+ +NRI IA+AGAIP+L++LL++ D+ TQEHAVTA+LNLSI+E+N
Sbjct: 383 EQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDN 442

Query: 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN 487
           K  I+ +GA+PSIV +L+ GSMEARENAAATLFSLS++DE K+ IG  GAIPALV LL  
Sbjct: 443 KASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGE 502

Query: 488 GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN 547
           GS RG+KDAA ALFNLCIY GNKGRA+RAG++  ++ ++T+    ++DEA+ ILS+L+S+
Sbjct: 503 GSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSH 562

Query: 548 PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE--NLACISRLGAVIPL 605
           PE K AI  A  +PVL+ ++ +G PRN+ENAAA++L LC  +    +LA     G ++PL
Sbjct: 563 PEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPL 622

Query: 606 TELTKSGTERAKRKATSLLEHLRKL 630
            EL  +GT+R KRKA  LLE + + 
Sbjct: 623 RELALNGTDRGKRKAVQLLERMSRF 647

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2

 Score =  430 bits (1106), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 270/625 (43%), Positives = 380/625 (60%), Gaps = 51/625 (8%)

Query: 34  RGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQASKR 93
           R  ++++ + L RRI LL   +EE+R+    +    E   +   L    +  +AL    R
Sbjct: 46  RNAYRRQLLALSRRIRLLGPFVEELRERRRGEGEGEEEERALAPLADALEAALALLRLGR 105

Query: 94  LLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQ 153
             +        DS       +  +FQ V+ +LE+AL +IPY+  DIS+EV+EQV L  +Q
Sbjct: 106 EGSRISLVLERDS-------VMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQ 158

Query: 154 LKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECH-----DADQ 208
           LKRA ER   M    F++ L    +K     N++  A+   +   +  + H     D  Q
Sbjct: 159 LKRAKERI-DMPDDEFYNDLLSVYDK-----NYDPSAELA-ILGRLSEKLHLMTITDLTQ 211

Query: 209 MMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDV----------------- 251
               L    +S   +  P + +         IK   + + PD+                 
Sbjct: 212 ESLALHEMVASGGGQD-PGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRP 270

Query: 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY 311
           + IP +F CPISLELM+DPVIV+TGQTYER+ I++WI  G+ TCP TQQK+    LTPNY
Sbjct: 271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNY 330

Query: 312 VLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDV----SGDVVAIEALVRKLSSRSVE 367
           VLRSLISQWC  + +E P        K+S    +      S +   I+AL+ KL S   E
Sbjct: 331 VLRSLISQWCETNGMEPP--------KRSTQPNKPTPACSSSERANIDALLSKLCSPDTE 382

Query: 368 ERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN 427
           E+R+A AE+R L+KR+ +NRI IA+AGAIP+L++LL++ D+ TQEHAVTA+LNLSI+E+N
Sbjct: 383 EQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDN 442

Query: 428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN 487
           K  I+ +GA+PSIV +L+ GSMEARENAAATLFSLS++DE K+ IG  GAIPALV LL  
Sbjct: 443 KASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGE 502

Query: 488 GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN 547
           GS RG+KDAA ALFNLCIY GNKGRA+RAG++  ++ ++T+    ++DEA+ ILS+L+S+
Sbjct: 503 GSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSH 562

Query: 548 PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE--NLACISRLGAVIPL 605
           PE K AI  A  +PVL+ ++ +G PRN+ENAAA++L LC  +    +LA     G ++PL
Sbjct: 563 PEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPL 622

Query: 606 TELTKSGTERAKRKATSLLEHLRKL 630
            EL  +GT+R KRKA  LLE + + 
Sbjct: 623 RELALNGTDRGKRKAVQLLERMSRF 647

Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/636 (38%), Positives = 367/636 (57%), Gaps = 53/636 (8%)

Query: 17  SVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTT 76
           S++E + +I G      R   +KEC +LVRR+ +L   L+EIR              S +
Sbjct: 59  SIVEFLDQINGY-----RRTQQKECFNLVRRLKILIPFLDEIR-----------GFESPS 102

Query: 77  SLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDR 136
              + N L     A+K+LL   C   S        E +  +F  +  KL + L   P+D 
Sbjct: 103 CKHFLNRLRKVFLAAKKLLE-TCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDE 161

Query: 137 FDISEEVQEQVVLARSQLKRATER---------------YGSMNSRNFFHALSQPLEKEV 181
             IS + ++++     QLK+A  R               +   + RN   A+ + L K++
Sbjct: 162 LMISGDAKDEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKL 221

Query: 182 SI-TNHEVKAKANHVPDTIDSECH---DADQMMNKLERRFSSVSSEVCPSDDVVAEGQEN 237
            + T  ++K +   +   I  +     +  Q + +L  +F  +      + D++ +   N
Sbjct: 222 ELQTIDDLKTETIAIQSLIQDKGGLNIETKQHIIELLNKFKKLQG--LEATDILYQPVIN 279

Query: 238 SAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPK 297
            AI       K   LI+P +FLCPI+LE+M DPVI+ATGQTYE+  IQ+W D G+ TCPK
Sbjct: 280 KAIT------KSTSLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPK 333

Query: 298 TQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL 357
           T+Q+L+HL+L PN+ L++LI QWC  +N + P        K+     ++   D V++  L
Sbjct: 334 TRQELDHLSLAPNFALKNLIMQWCEKNNFKIPE-------KEVSPDSQNEQKDEVSL--L 384

Query: 358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTA 417
           V  LSS  +EE+R +V ++R L++ + +NR++IA+AGAIP+LV LL+  D   QE+AVT 
Sbjct: 385 VEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTT 444

Query: 418 ILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGA 477
           +LNLSI E NK LI   GAIP+I++IL  G+ EAREN+AA LFSLS+LDENK+ IG S  
Sbjct: 445 LLNLSIDEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNG 504

Query: 478 IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEA 537
           IP LVDLLQ+G+ RG+KDA TALFNL +   NKGRA+ AGI+  LL +L D    M+DEA
Sbjct: 505 IPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEA 564

Query: 538 LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACIS 597
           L+IL +LAS+PE + AI + S I  L+  +R G P+NKE A ++LL L   ++  +    
Sbjct: 565 LSILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAAL 624

Query: 598 RLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQL 633
           + G    L E+T SGT RA+RKA +L++ + K  Q+
Sbjct: 625 QFGVYEYLVEITTSGTNRAQRKANALIQLISKSEQI 660

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1

 Score =  249 bits (635), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 163/384 (42%), Positives = 223/384 (58%), Gaps = 17/384 (4%)

Query: 252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY 311
           + +P DF+CPISL+LM DPVI++TGQTY+R+ I RWI+ G+ TCPKT Q L    + PN 
Sbjct: 303 ITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNR 362

Query: 312 VLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEA-------LVRKLSSR 364
            L++LI QWCT   I       +      + SF        A+EA       L++ L+  
Sbjct: 363 ALKNLIVQWCTASGISYESEFTD----SPNESFASALPTKAAVEANKATVSILIKYLADG 418

Query: 365 SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY 424
           S   +  A  EIR L+K   +NR  IA+AGAIP L  LLT+++ + QE++VTA+LNLSIY
Sbjct: 419 SQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIY 478

Query: 425 ENNKGLIMLAG-AIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIG-ASGAIPAL 481
           E NK  IM  G  + SIV +L +G ++EA+ENAAATLFSLS + E K  I      + AL
Sbjct: 479 EKNKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEAL 538

Query: 482 VDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTIL 541
             LLQNG+ RG+KDA TAL+NL  +  N  R +  G +S+L+  L +            L
Sbjct: 539 ALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEGVAEEAAGALAL 598

Query: 542 SVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA-CISRLG 600
            V  S     I   + S +  L+ ++R G PR KENA A LL LC+     +A  + R  
Sbjct: 599 LVRQSLGAEAIG-KEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAP 657

Query: 601 AVIPLTE-LTKSGTERAKRKATSL 623
           A+  L + L  +GT+RA+RKA SL
Sbjct: 658 AIAGLLQTLLFTGTKRARRKAASL 681

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	636
297737715	621	unnamed protein product [Vitis vinifera]	0.929	0.951	0.737	0.0
225424193	639	PREDICTED: U-box domain-containing prote	0.929	0.924	0.722	0.0
255570088	648	E3 ubiquitin ligase PUB14, putative [Ric	0.949	0.932	0.708	0.0
356519737	654	PREDICTED: U-box domain-containing prote	0.977	0.951	0.686	0.0
449500783	661	PREDICTED: U-box domain-containing prote	0.959	0.922	0.655	0.0
356575522	651	PREDICTED: U-box domain-containing prote	0.938	0.917	0.702	0.0
449445427	624	PREDICTED: U-box domain-containing prote	0.927	0.945	0.657	0.0
42563127	628	U-box domain-containing protein 10 [Arab	0.965	0.977	0.659	0.0
297841865	633	armadillo/beta-catenin repeat family pro	0.965	0.969	0.651	0.0
357475259	605	U-box domain-containing protein, partial	0.827	0.869	0.737	0.0

>gi|297737715|emb|CBI26916.3| unnamed protein product [Vitis vinifera]

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/601 (73%), Positives = 503/601 (83%), Gaps = 10/601 (1%)

Query: 38  KKECVDLVRRIALLKHLLEEIRDSG----PLDVLPSESSSSTTSLLWWNDLVVALQASKR 93
           K++C DLVRRIALL HL EEIRD G    PLDV    S+SS + L   +++  ALQA+KR
Sbjct: 26  KRDCTDLVRRIALLTHLFEEIRDFGAGLRPLDV----STSSASPLTCLSEVANALQAAKR 81

Query: 94  LLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQ 153
           LL+ A  +SS   SD AA+KI+FQFQCV WKLEK LGN+PYD F+ISEEV+EQV L R+Q
Sbjct: 82  LLSAAGNFSSDAFSDGAAKKITFQFQCVTWKLEKTLGNLPYDHFEISEEVREQVELVRAQ 141

Query: 154 LKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECHDADQMMNKL 213
           L+RATERYG +NS+    ALS PL++E+       +AK + VP   DS     DQ + + 
Sbjct: 142 LRRATERYGPLNSKVVSCALSLPLDREIHPRQSGNRAKMDSVPKCNDSHSI-TDQFVPES 200

Query: 214 ER-RFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVI 272
            R   SS S+E   S+D+ AE    SA KS+ EIKKPD ++IP DFLCPISLELMRDPVI
Sbjct: 201 GRLSNSSASAEAHLSNDIDAEKGHKSATKSLEEIKKPDSVVIPNDFLCPISLELMRDPVI 260

Query: 273 VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGL 332
           VATGQTYERSYIQRWIDCGN+TCPKTQ +L++LTLTPNY LRSLI+QWCT +NIEQP GL
Sbjct: 261 VATGQTYERSYIQRWIDCGNLTCPKTQLELQNLTLTPNYALRSLITQWCTKNNIEQPTGL 320

Query: 333 ANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD 392
            NG+IKKSDG+FRDVSGD+ AIEALVRKLSS S+EERRAA  EIRSLSKRSTDNRI+IA+
Sbjct: 321 VNGRIKKSDGTFRDVSGDIAAIEALVRKLSSWSIEERRAAATEIRSLSKRSTDNRILIAE 380

Query: 393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEAR 452
           AGAIP LVNLLTTDDV+TQE+AVT+ILNLSIYENNKGLIMLAGAIPSIV +LR+GSMEAR
Sbjct: 381 AGAIPALVNLLTTDDVVTQENAVTSILNLSIYENNKGLIMLAGAIPSIVLVLRSGSMEAR 440

Query: 453 ENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR 512
           ENAAATLFSLS+ DENKIIIGASGA+PALV+LLQNGSTRG+KDAATALFNLCIY GNK R
Sbjct: 441 ENAAATLFSLSVADENKIIIGASGAMPALVELLQNGSTRGKKDAATALFNLCIYQGNKSR 500

Query: 513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLP 572
           AV+AGII+AL KMLTD  NCMVDEALTILSVL+S+ EAKI+IVKAS IPVLI LLRTGLP
Sbjct: 501 AVKAGIITALSKMLTDLNNCMVDEALTILSVLSSHQEAKISIVKASIIPVLIDLLRTGLP 560

Query: 573 RNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQ 632
           RNKENAAAILLSLCKRD ENLACISRLGAVIPL EL KSGTERAKRKATSLLEHL++L Q
Sbjct: 561 RNKENAAAILLSLCKRDNENLACISRLGAVIPLAELAKSGTERAKRKATSLLEHLQRLQQ 620

Query: 633 L 633
           L
Sbjct: 621 L 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424193|ref|XP_002280520.1| PREDICTED: U-box domain-containing protein 10-like [Vitis vinifera]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/619 (72%), Positives = 507/619 (81%), Gaps = 28/619 (4%)

Query: 38  KKECVDLVRRIALLKHLLEEIRDSG----PLDVLPSESSSSTTSLLWWNDLVVALQASKR 93
           K++C DLVRRIALL HL EEIRD G    PLDV    S+SS + L   +++  ALQA+KR
Sbjct: 26  KRDCTDLVRRIALLTHLFEEIRDFGAGLRPLDV----STSSASPLTCLSEVANALQAAKR 81

Query: 94  LLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQ 153
           LL+ A  +SS   SD AA+KI+FQFQCV WKLEK LGN+PYD F+ISEEV+EQV L R+Q
Sbjct: 82  LLSAAGNFSSDAFSDGAAKKITFQFQCVTWKLEKTLGNLPYDHFEISEEVREQVELVRAQ 141

Query: 154 LKRATERYGSMNSRNFFHALSQPLEKEVS-------IT-----------NHEVKAKANHV 195
           L+RATERYG +NS+    ALS PL++E+        +T           N E KAK + V
Sbjct: 142 LRRATERYGPLNSKVVSCALSLPLDREIHPRQSGNRVTGSFHIENLGNINPEAKAKMDSV 201

Query: 196 PDTIDSECHDADQMMNKLER-RFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLII 254
           P   DS     DQ + +  R   SS S+E   S+D+ AE    SA KS+ EIKKPD ++I
Sbjct: 202 PKCNDSHSI-TDQFVPESGRLSNSSASAEAHLSNDIDAEKGHKSATKSLEEIKKPDSVVI 260

Query: 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLR 314
           P DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGN+TCPKTQ +L++LTLTPNY LR
Sbjct: 261 PNDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNLTCPKTQLELQNLTLTPNYALR 320

Query: 315 SLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVA 374
           SLI+QWCT +NIEQP GL NG+IKKSDG+FRDVSGD+ AIEALVRKLSS S+EERRAA  
Sbjct: 321 SLITQWCTKNNIEQPTGLVNGRIKKSDGTFRDVSGDIAAIEALVRKLSSWSIEERRAAAT 380

Query: 375 EIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLA 434
           EIRSLSKRSTDNRI+IA+AGAIP LVNLLTTDDV+TQE+AVT+ILNLSIYENNKGLIMLA
Sbjct: 381 EIRSLSKRSTDNRILIAEAGAIPALVNLLTTDDVVTQENAVTSILNLSIYENNKGLIMLA 440

Query: 435 GAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRK 494
           GAIPSIV +LR+GSMEARENAAATLFSLS+ DENKIIIGASGA+PALV+LLQNGSTRG+K
Sbjct: 441 GAIPSIVLVLRSGSMEARENAAATLFSLSVADENKIIIGASGAMPALVELLQNGSTRGKK 500

Query: 495 DAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAI 554
           DAATALFNLCIY GNK RAV+AGII+AL KMLTD  NCMVDEALTILSVL+S+ EAKI+I
Sbjct: 501 DAATALFNLCIYQGNKSRAVKAGIITALSKMLTDLNNCMVDEALTILSVLSSHQEAKISI 560

Query: 555 VKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTE 614
           VKAS IPVLI LLRTGLPRNKENAAAILLSLCKRD ENLACISRLGAVIPL EL KSGTE
Sbjct: 561 VKASIIPVLIDLLRTGLPRNKENAAAILLSLCKRDNENLACISRLGAVIPLAELAKSGTE 620

Query: 615 RAKRKATSLLEHLRKLPQL 633
           RAKRKATSLLEHL++L QL
Sbjct: 621 RAKRKATSLLEHLQRLQQL 639

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570088|ref|XP_002526006.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis] gi|223534653|gb|EEF36346.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis]

 Score =  857 bits (2213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/638 (70%), Positives = 512/638 (80%), Gaps = 34/638 (5%)

Query: 18  VIEVVGEITGMSCGNGRG-----VFKKECVDLVRRIALLKHLLEEIRD---------SGP 63
           ++++VGEI G+S GNG       VF+K+C DLVR+I+LL HLLEE+RD         SGP
Sbjct: 21  LLKLVGEIVGISAGNGINGCDELVFRKDCTDLVRKISLLTHLLEEMRDFNKVLLDDESGP 80

Query: 64  LDVLPSESSSSTTSLLWWNDLVVALQASKRLLAVACCY--SSGDSSDEAAEKISFQFQCV 121
           LD LPS + +      W +DL  ALQA+KRLL VA  +  S+  +SD A +K + QFQCV
Sbjct: 81  LD-LPSSNGN------WCSDLFSALQAAKRLLLVAFTFKSSTAHNSDGATKKFAVQFQCV 133

Query: 122 MWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEV 181
             KLEK L NIPYD+FDISEEVQEQV L RSQL+RATERYGS+NSR    AL++ L KEV
Sbjct: 134 TRKLEKVLANIPYDQFDISEEVQEQVGLVRSQLRRATERYGSLNSRTASFALAE-LNKEV 192

Query: 182 S---ITNHEVKAKANHVPDTIDSECHDADQMMNKL----ERRFSSVSSEVCPSDDVVAEG 234
           +     N   +   N    +I+   H+  + +N +    E +  +V   V  S +V    
Sbjct: 193 NNIQKGNRLTRGGPNENSGSIN---HEGTERLNVVSVSSEAKRHAVDQVVSESKEVGGNK 249

Query: 235 QENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVT 294
           ++  A K+M ++KKPD   IP DFLCPI+LE+MRDPVIVATGQTYERSYIQRWID GN T
Sbjct: 250 KDCLANKNMEDLKKPDAPAIPDDFLCPIALEIMRDPVIVATGQTYERSYIQRWIDTGNTT 309

Query: 295 CPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAI 354
           CPKTQQKLEHLTLTPNYVLRS+I+QWC  HNIEQP  LANG+IKKSDGSFRDVSGD+ AI
Sbjct: 310 CPKTQQKLEHLTLTPNYVLRSVITQWCAQHNIEQPSALANGRIKKSDGSFRDVSGDIAAI 369

Query: 355 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHA 414
           +ALVRKLSSRSVEERRAAV+EIRSLSKRSTDNRI+IA+AGAIPVLVNLLT +DV  QE++
Sbjct: 370 QALVRKLSSRSVEERRAAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTAEDVPIQENS 429

Query: 415 VTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA 474
           VTAILNLSIYE+NKGLIMLAGA+PSIVQILRAGS+EARENAAATLFSLSL DENKIIIGA
Sbjct: 430 VTAILNLSIYESNKGLIMLAGAVPSIVQILRAGSVEARENAAATLFSLSLGDENKIIIGA 489

Query: 475 SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMV 534
           SGAIPALV+LL+NGS RG+KDAATALFNLCIY GNKGRAVRAGII ALLKMLTDSRNCM 
Sbjct: 490 SGAIPALVELLENGSPRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDSRNCMA 549

Query: 535 DEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA 594
           DEALTILSVLASN +AK AIVKASTIPVLI LLRTG PRNKENAAAILLSLCKRD ENLA
Sbjct: 550 DEALTILSVLASNQDAKAAIVKASTIPVLIDLLRTGQPRNKENAAAILLSLCKRDPENLA 609

Query: 595 CISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQ 632
           CISRLGAVIPL EL KSGTER KRKATSLLEHLRKL Q
Sbjct: 610 CISRLGAVIPLMELAKSGTERGKRKATSLLEHLRKLQQ 647

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519737|ref|XP_003528526.1| PREDICTED: U-box domain-containing protein 10-like [Glycine max]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/650 (68%), Positives = 519/650 (79%), Gaps = 28/650 (4%)

Query: 10  AGERTADSVIEVVGEITGM-SCGNGRG---VFKKECVDLVRRIALLKHLLEEIR------ 59
           AG+ T + ++ +V EI GM S G+  G   +F+K+C DLVRRI+LL HL EEI+      
Sbjct: 7   AGDHTPE-LLCLVHEIAGMCSAGSSSGADAMFRKDCTDLVRRISLLTHLFEEIKELKNNN 65

Query: 60  DSG--PLDVLPSESSSSTTSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQ 117
           D G          SSSS+ S  W +DLV+AL +++RLL+VA  + S  SSD AA+ I FQ
Sbjct: 66  DVGGSASSSSSYSSSSSSASSKWSSDLVLALHSARRLLSVARNFRSYCSSDGAAKTIVFQ 125

Query: 118 FQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPL 177
           FQCV WKLEK L N+PYD  DISEEV+EQV L R+QL+RAT++YG M S+   H LSQPL
Sbjct: 126 FQCVTWKLEKLLSNLPYDDLDISEEVKEQVDLVRTQLRRATDKYGFMISKMPSHELSQPL 185

Query: 178 EKEVSIT----------NH---EVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEV 224
            +E+S             H   E  ++ + +P   + +    +    +LER   S+ +EV
Sbjct: 186 AEEISQVLGKSVSRLHKQHSCPENLSELDSIPINYEEKRCSKNPAGTRLERT-RSIPTEV 244

Query: 225 CPSDDVV-AEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSY 283
             S +    E QE S  K + E+KKP+ ++IP DFLCPISLELMRDPVIVATGQTYERSY
Sbjct: 245 EVSLNATDPESQEISETKILPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSY 304

Query: 284 IQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGS 343
           IQRWIDCGN TCPKTQQKL+HLTLTPNYVLRSLISQWC  HNIEQP GL NGK+KKSDGS
Sbjct: 305 IQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKLKKSDGS 364

Query: 344 FRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL 403
           FRDV+GD+ AIEALVRKLS RSVEERRAAV E+RSLSKRSTDNRI+IA+AGAIPVLVNLL
Sbjct: 365 FRDVTGDIAAIEALVRKLSCRSVEERRAAVTELRSLSKRSTDNRILIAEAGAIPVLVNLL 424

Query: 404 TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLS 463
           T++DV+TQ++AVT+ILNLSIYENNKGLIMLAGAIPSIVQ+LRAG+MEARENAAATLFSLS
Sbjct: 425 TSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLS 484

Query: 464 LLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALL 523
           L DENKIIIGASGAIPALV+LLQNGS RG+KDAATALFNLCIY GNKGRA+RAGII+ALL
Sbjct: 485 LADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALL 544

Query: 524 KMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
           KMLTDS   MVDEALTI+SVLAS+ EAK+AIVKASTIPVLI LLRTGLPRNKENAAAILL
Sbjct: 545 KMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILL 604

Query: 584 SLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQL 633
           +LCKRD +NLACISRLG VIPL+EL ++GTERAKRKATSLLEH+RKL QL
Sbjct: 605 ALCKRDADNLACISRLGVVIPLSELARNGTERAKRKATSLLEHIRKLQQL 654

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500783|ref|XP_004161193.1| PREDICTED: U-box domain-containing protein 10-like [Cucumis sativus]

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/653 (65%), Positives = 502/653 (76%), Gaps = 43/653 (6%)

Query: 17  SVIEVVGEITGMSCGNGRG-VFKKECVDLVRRIALLKHLLEEIRDSGPLDV--------- 66
           ++++ V ++  MS G   G +FKK+C DLVRRI LL H  EEIRDS  L           
Sbjct: 16  ALLDFVRDVVRMSAGTNSGQLFKKDCTDLVRRIVLLTHFFEEIRDSNALQFRFLDASSSS 75

Query: 67  --------LPSESSSSTTSLLWWNDLVVALQASKRLLAVACCYSS-GDSSDEAAEKISFQ 117
                     + +   ++   W +DLV AL+ +KRL+ +A  + S G SS+E A+KI FQ
Sbjct: 76  SSSSSSSSCGAVTGRDSSHFPWLSDLVAALKDTKRLIFIASTFRSYGSSSEEVAKKILFQ 135

Query: 118 FQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPL 177
           FQCV WKLEKALGN+PYDR DISEEVQEQV L ++QL+RA E+YGS+ +       SQ L
Sbjct: 136 FQCVTWKLEKALGNLPYDRLDISEEVQEQVELVKAQLRRAAEKYGSLTAIPPSVVQSQLL 195

Query: 178 EKEVSITN-----------------HEVKAKANHVPDTIDSECHDADQMMNKLERRFSSV 220
           +K V I N                 HE+  K +  P+         DQM+ K   +  S 
Sbjct: 196 KKNVDILNLNNWIDSFDVEENGIVDHEITVKFDAFPNCRGLMNGGVDQMIFKGLEKLPSA 255

Query: 221 SSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYE 280
           S       +V ++   +SA KS  ++K PD + IP DFLCPISLE+MRDPVIV+TGQTYE
Sbjct: 256 S-------EVSSDEHNDSAKKSGDQVKNPDGVTIPDDFLCPISLEIMRDPVIVSTGQTYE 308

Query: 281 RSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKS 340
           RSY+QRWIDCGN TCPKTQQKL++LTLTPNYVLRSLISQWC  HNIEQP GL NGKIKK 
Sbjct: 309 RSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKC 368

Query: 341 DGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLV 400
           DGS+RDV  ++ AIE LVRKL+S S+EERRA+V E+RSLSKRSTDNRI+IA+AGAIP LV
Sbjct: 369 DGSYRDVCEEMAAIETLVRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALV 428

Query: 401 NLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF 460
           NLLT++DV+ QE+AVT+ILNLSIYENNKGLIMLAGA+PSIVQ+LR GSMEARENAAATLF
Sbjct: 429 NLLTSEDVLVQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLF 488

Query: 461 SLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIIS 520
           SLSL DEN+IIIGASGAIPALVDLL+NGS+RG+KDAATALFNLCIY GNKGRAVRAGI+S
Sbjct: 489 SLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIVS 548

Query: 521 ALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA 580
           ALLKMLTDS N M+DEALTI+SVLAS+ EAK+A+VKASTIPVLI LLRTGLPRNKENAAA
Sbjct: 549 ALLKMLTDSANSMIDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAA 608

Query: 581 ILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQL 633
           ILL+LCKRDT+NL+CISRLGAVIPLTEL KSGTERAKRKATSLLEHLRKL QL
Sbjct: 609 ILLALCKRDTDNLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 661

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575522|ref|XP_003555889.1| PREDICTED: U-box domain-containing protein 10-like [Glycine max]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/615 (70%), Positives = 503/615 (81%), Gaps = 18/615 (2%)

Query: 36  VFKKECVDLVRRIALLKHLLEEIRDSGPLDV---LPSESSSSTTSLLWWNDLVVALQASK 92
           +F+K+C DLVRRI+LL HL EEI++     V     S S SS+ S  W +DLV+AL +++
Sbjct: 38  MFRKDCTDLVRRISLLTHLFEEIKELSNNVVGGSSSSPSPSSSASSKWSSDLVLALHSAR 97

Query: 93  RLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARS 152
           RLL+VA  + S  SSD AA+ I FQFQCV WKLEK L N+PYD  DISEEV+EQV L R+
Sbjct: 98  RLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDDLDISEEVKEQVDLVRT 157

Query: 153 QLKRATERYGSMNSRNFFHALSQPLEKEVSI-------------TNHEVKAKANHVPDTI 199
           QL+RAT++YG M S+   H LSQPL +E+S              +  E  ++ + +P   
Sbjct: 158 QLRRATDKYGFMISKMPSHELSQPLAEEISQVLGKSVSRLHKQQSCPENLSELDSIPINN 217

Query: 200 DSECHDADQMMNKLERRFSSVSSEVCPSDDVV-AEGQENSAIKSMAEIKKPDVLIIPADF 258
           + +C   +   ++LER   S+ +EV  S +    E QE S  KS+ E+KK + ++IP DF
Sbjct: 218 EGKCCSTNPARSRLERT-RSIPTEVEVSLNATEPESQEISETKSLPEVKKTEGIVIPEDF 276

Query: 259 LCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLIS 318
           LCPISLELMRDPVIVATGQTYERSYIQRWIDCGN TCPKTQQKL+HLTLTPNYVLRSLIS
Sbjct: 277 LCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLIS 336

Query: 319 QWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRS 378
           QWC  HNIEQP GL NGK+KKSDGSFRDV+GD+ AIEALV KLSSRSVEERR+AV EIR 
Sbjct: 337 QWCIEHNIEQPTGLTNGKLKKSDGSFRDVTGDIAAIEALVWKLSSRSVEERRSAVTEIRL 396

Query: 379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIP 438
           LSKRSTDNRI+IA+AGAIPVLVNLLT++DV+TQ++AVT+ILNLSIYENNKGLIMLAGAIP
Sbjct: 397 LSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIP 456

Query: 439 SIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAAT 498
           SIVQ+LRAG+MEARENAAATLFSLSL DENKIIIGASGAIPALV+LLQNGS RG+KDAAT
Sbjct: 457 SIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAAT 516

Query: 499 ALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKAS 558
           ALFNLCIY GNKGRA+RAGII+ALLKMLTDS   MVDEALTI+SVLAS+ EAK+AIVKAS
Sbjct: 517 ALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKAS 576

Query: 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKR 618
           TIPVLI LLRTGLPRNKENAAAILL+LCKRD +NLACISRLGA+IPL+EL ++GTERAKR
Sbjct: 577 TIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGALIPLSELARNGTERAKR 636

Query: 619 KATSLLEHLRKLPQL 633
           KATSLLEH+ KL QL
Sbjct: 637 KATSLLEHIHKLQQL 651

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445427|ref|XP_004140474.1| PREDICTED: U-box domain-containing protein 10-like [Cucumis sativus]

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/636 (65%), Positives = 490/636 (77%), Gaps = 46/636 (7%)

Query: 17  SVIEVVGEITGMSCGNGRG-VFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSST 75
           ++++ V ++  MS G   G +FKK+C DL    A+        RDS              
Sbjct: 16  ALLDFVRDVVRMSAGTNSGQLFKKDCTDLFSCGAVTG------RDS-------------- 55

Query: 76  TSLLWWNDLVVALQASKRLLAVACCYSS-GDSSDEAAEKISFQFQCVMWKLEKALGNIPY 134
           +   W +DLV AL+ +KRL+ +A  + S G SS+E A+KI FQFQCV WKLEKALGN+PY
Sbjct: 56  SHFPWLSDLVAALKDTKRLIFIASTFRSYGSSSEEVAKKILFQFQCVTWKLEKALGNLPY 115

Query: 135 DRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITN--------- 185
           DR DISEEVQEQV L ++QL+RA E+YGS+ +       SQ L+K V I N         
Sbjct: 116 DRLDISEEVQEQVELVKAQLRRAAEKYGSLTAIPPSVVQSQLLKKNVDILNLNNWIDSFD 175

Query: 186 --------HEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQEN 237
                   HE+  K +  P+         DQM+ K   +  S S       +V ++   +
Sbjct: 176 VEENGIVDHEITVKFDAFPNCRGLMNGGVDQMIFKGLEKLPSAS-------EVSSDEHND 228

Query: 238 SAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPK 297
           SA KS  ++K PD + IP DFLCPISLE+MRDPVIV+TGQTYERSY+QRWIDCGN TCPK
Sbjct: 229 SAKKSGDQVKNPDGVTIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPK 288

Query: 298 TQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEAL 357
           TQQKL++LTLTPNYVLRSLISQWC  HNIEQP GL NGKIKK DGS+RDV  ++ AIE L
Sbjct: 289 TQQKLQNLTLTPNYVLRSLISQWCVNHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETL 348

Query: 358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTA 417
           VRKL+S S+EERRA+V E+RSLSKRSTDNRI+IA+AGAIP LVNLLT++DV+ QE+AVT+
Sbjct: 349 VRKLTSHSIEERRASVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSEDVLVQENAVTS 408

Query: 418 ILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGA 477
           ILNLSIYENNKGLIMLAGA+PSIVQ+LR GSMEARENAAATLFSLSL DEN+IIIGASGA
Sbjct: 409 ILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGA 468

Query: 478 IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEA 537
           IPALVDLL+NGS+RG+KDAATALFNLCIY GNKGRAVRAGI+SALLKMLTDS N M+DEA
Sbjct: 469 IPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIVSALLKMLTDSANSMIDEA 528

Query: 538 LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACIS 597
           LTI+SVLAS+ EAK+A+VKASTIPVLI LLRTGLPRNKENAAAILL+LCKRDT+NL+CIS
Sbjct: 529 LTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCIS 588

Query: 598 RLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQL 633
           RLGAVIPLTEL KSGTERAKRKATSLLEHLRKL QL
Sbjct: 589 RLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 624

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563127|ref|NP_177258.3| U-box domain-containing protein 10 [Arabidopsis thaliana] gi|75262229|sp|Q9C9A6.1|PUB10_ARATH RecName: Full=U-box domain-containing protein 10; AltName: Full=Plant U-box protein 10 gi|12323419|gb|AAG51682.1|AC016972_1 unknown protein; 17861-15581 [Arabidopsis thaliana] gi|19715632|gb|AAL91637.1| At1g71020/F23N20_1 [Arabidopsis thaliana] gi|22655468|gb|AAM98326.1| At1g71020/F23N20_1 [Arabidopsis thaliana] gi|332197031|gb|AEE35152.1| U-box domain-containing protein 10 [Arabidopsis thaliana]

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/629 (65%), Positives = 492/629 (78%), Gaps = 15/629 (2%)

Query: 7   LAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDV 66
           +AG G  T DS+I ++ EI  +  GN  G+FKK+C DL RR+ LL HL+EEIRDS P   
Sbjct: 1   MAG-GAITPDSLIGLIAEINEIP-GNF-GLFKKDCSDLARRVGLLTHLIEEIRDSSP--- 54

Query: 67  LPSESSSSTT----SLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVM 122
            PSES +S++       WW+DLVV LQA+KRLL+ A  + + +SSD AA++ISFQFQCV 
Sbjct: 55  -PSESDASSSLNSHECDWWSDLVVGLQAAKRLLSSATSFQARESSDGAAKRISFQFQCVT 113

Query: 123 WKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVS 182
           WKLEKALG++ YDR+DIS+EV+EQV LAR QL+RA +RYGS+NS+ F   LS+P+EK+ S
Sbjct: 114 WKLEKALGDLTYDRYDISDEVREQVELARLQLRRAMQRYGSLNSKKFSSGLSEPMEKDAS 173

Query: 183 ITNHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKS 242
            +N +V  K   +P+T+ S   D  +  +    + SSVS     S D   E  E +  ++
Sbjct: 174 -SNRKVIEKLESIPETVHS-LSDEKKFESPPPWKSSSVSLAFFLSKDGDDERLEKAVTEN 231

Query: 243 MAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL 302
             + +K D L IP DFLCPISLELM+DP IV+TGQTYERS+IQRWIDCGN++CPKTQQKL
Sbjct: 232 SDDSQKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKL 291

Query: 303 EHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLS 362
           E+ TLTPNYVLRSLISQWCT HNIEQP G  NG+ K SDGSFRD+SGD+ AI ALV KLS
Sbjct: 292 ENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLS 351

Query: 363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNL 421
           S+S+E+RR AV+EIRSLSKRSTDNRI+IA+AGAIPVLV LLT+D D  TQE+AVT ILNL
Sbjct: 352 SQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNL 411

Query: 422 SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPAL 481
           SIYE+NK LIMLAGA+ SIV +LRAGSMEARENAAATLFSLSL DENKIIIGASGAI AL
Sbjct: 412 SIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMAL 471

Query: 482 VDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRN-CMVDEALTI 540
           VDLLQ GS RG+KDAATALFNLCIY GNKGRAVRAGI+  L+KMLTDS +  M DEALTI
Sbjct: 472 VDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTI 531

Query: 541 LSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLG 600
           LSVLASN  AK AI++A+ IP LI  L+   PRN+ENAAAILL LCKRDTE L  I RLG
Sbjct: 532 LSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLG 591

Query: 601 AVIPLTELTKSGTERAKRKATSLLEHLRK 629
           AV+PL EL++ GTERAKRKA SLLE LRK
Sbjct: 592 AVVPLMELSRDGTERAKRKANSLLELLRK 620

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841865|ref|XP_002888814.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334655|gb|EFH65073.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/634 (65%), Positives = 487/634 (76%), Gaps = 20/634 (3%)

Query: 7   LAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDV 66
           +AG G  T  S+I ++ EI  +    G  VFKK+C DL RR+ LL HL+EEIRDS P   
Sbjct: 1   MAG-GAITPASLIGLISEINEVPVNFG--VFKKDCADLARRVGLLTHLIEEIRDSSP--- 54

Query: 67  LPSESSSSTTSLL-----WWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCV 121
            P   S +++SL+     WW+DLVV LQA+KRLL+ A  + + +SSD AA++I FQFQCV
Sbjct: 55  -PPPESDASSSLISYECDWWSDLVVGLQAAKRLLSSATSFQARESSDGAAKRILFQFQCV 113

Query: 122 MWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEV 181
            WKLEKALG++PYDR+DIS+EV++QV LAR QL+RA +RYGS+NS+ F  ALS+P+EK+ 
Sbjct: 114 TWKLEKALGDLPYDRYDISDEVRDQVELARLQLRRAMQRYGSLNSKKFSSALSEPMEKDA 173

Query: 182 SI-TNHEVKAKANHVPDTIDSECHDADQMMNKLE----RRFSSVSSEVCPSDDVVAEGQE 236
           S  T  +V  K   +P+T+ S    +D+   K E    R+ SSVS     S D   E  E
Sbjct: 174 SSNTKSKVIEKLESIPETVHSNIPLSDE--KKFESPPPRKSSSVSLAFFLSKDADDERLE 231

Query: 237 NSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCP 296
               K+  + +K D L IP DFLCPISLELM+DP IV+TGQTYERSYIQRWIDCGN+ CP
Sbjct: 232 KVVTKNSDDSQKSDKLTIPEDFLCPISLELMKDPAIVSTGQTYERSYIQRWIDCGNLRCP 291

Query: 297 KTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEA 356
           KTQQKL++ TLTPNYVLRSLISQWCT HNIEQP G  NG+ +  DGSFRD+SG + AI A
Sbjct: 292 KTQQKLKNFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTQNPDGSFRDLSGGMSAIRA 351

Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVT 416
           LVRKLSSRS+EERR AV+EIRSLSK STDNRI+IA+AGAIPVLV LL ++D  TQE+AVT
Sbjct: 352 LVRKLSSRSIEERRTAVSEIRSLSKTSTDNRILIAEAGAIPVLVKLLISEDTKTQENAVT 411

Query: 417 AILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASG 476
            ILNLSIYE+NK LIMLAGA+ SIV +LRAG+MEARENAAATLFSLSL DENKIIIGASG
Sbjct: 412 CILNLSIYEHNKELIMLAGAVTSIVLVLRAGTMEARENAAATLFSLSLADENKIIIGASG 471

Query: 477 AIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVD 535
           AI ALVDLLQ GS RG+KDAATALFNLCIY GNKGRAVRAGI+  L+KMLTD S + M D
Sbjct: 472 AILALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVHPLVKMLTDSSSDRMAD 531

Query: 536 EALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC 595
           EALTILSVLASN  AK AI++A  IP LI  L+   PRN+ENAAAILLSLCKRDTE L  
Sbjct: 532 EALTILSVLASNQVAKTAILRAKAIPPLIDCLQKDQPRNRENAAAILLSLCKRDTEKLIS 591

Query: 596 ISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629
           I RLGAV+PL EL++ GTERAKRKA SLLE LRK
Sbjct: 592 IGRLGAVVPLMELSRDGTERAKRKANSLLELLRK 625

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475259|ref|XP_003607915.1| U-box domain-containing protein, partial [Medicago truncatula] gi|355508970|gb|AES90112.1| U-box domain-containing protein, partial [Medicago truncatula]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/540 (73%), Positives = 449/540 (83%), Gaps = 14/540 (2%)

Query: 108 DEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSR 167
           D AA+KI FQFQ V WKLEK L ++PYD  DISEEV+EQV L R+QL+RAT++YG M S+
Sbjct: 66  DGAAKKIIFQFQRVTWKLEKLLSSLPYDDLDISEEVKEQVDLVRNQLRRATDKYGFMISK 125

Query: 168 NFFHALSQPLEKEVSIT----------NH---EVKAKANHVPDTIDSECHDADQMMNKLE 214
                 SQPL +E+S             H   E  ++   +P + + +  +     ++LE
Sbjct: 126 MPSFDSSQPLAQEISQVLGQSVSGLHKQHSCPENLSELGSIPKSNEGKSCNPFGAGSRLE 185

Query: 215 R-RFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIV 273
           R R    SSEV  S     E QE S   ++ E+KKPD ++IP DFLCPISLELMRDPVIV
Sbjct: 186 RTRSIHASSEVSFSIKTAPESQEISGSGNLPEVKKPDAIVIPEDFLCPISLELMRDPVIV 245

Query: 274 ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLA 333
           ATGQTYERSYIQRWIDCGN TCPKTQQKL+HLTLTPNYVLRSL+SQWC  HNIEQP GL 
Sbjct: 246 ATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLVSQWCIEHNIEQPTGLT 305

Query: 334 NGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA 393
           NGKIKKSDGSFRDV+GD+ AIE LVRKLS RSVEE RAAVAEIRSLSKRSTDNRI+IA+A
Sbjct: 306 NGKIKKSDGSFRDVTGDIAAIETLVRKLSCRSVEESRAAVAEIRSLSKRSTDNRILIAEA 365

Query: 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARE 453
           GAIPVLV+LLT++DVMTQE+AVT+ILNLSIYENNKGLIMLAGAIPSIVQ+LRAG+MEARE
Sbjct: 366 GAIPVLVSLLTSEDVMTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARE 425

Query: 454 NAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA 513
           NAAATLFSLSL DENKIIIGASGAI ALVDLLQNGS RG+KDAATALFNLCIY GNKGRA
Sbjct: 426 NAAATLFSLSLADENKIIIGASGAISALVDLLQNGSPRGKKDAATALFNLCIYQGNKGRA 485

Query: 514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPR 573
           +RAGII+ALL MLTDS   MVDEALTI+SVLAS+ EAK++IVKASTIPVLI LLRTGLPR
Sbjct: 486 IRAGIITALLNMLTDSSKSMVDEALTIMSVLASHQEAKVSIVKASTIPVLIDLLRTGLPR 545

Query: 574 NKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQL 633
           NKENAAAILL+LCKRDT+NL+CISRLGAVIPL+EL ++GTERAKRKATSLLEHLRKL QL
Sbjct: 546 NKENAAAILLALCKRDTDNLSCISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 605

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	636
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.971	0.984	0.656	9.4e-201
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.955	0.993	0.636	2.3e-197
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.952	0.958	0.443	8.3e-122
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.889	0.926	0.467	1.1e-121
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.952	0.873	0.433	9.8e-119
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.946	0.912	0.433	4.9e-117
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.919	0.886	0.389	1.3e-98
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.452	0.347	0.487	7.7e-90
TAIR|locus:2013688	729	PUB17 "plant U-box 17" [Arabid	0.581	0.507	0.427	7.7e-70
UNIPROTKB|Q6EUK7	728	PUB4 "U-box domain-containing	0.577	0.504	0.415	4.2e-67

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 1943 (689.0 bits), Expect = 9.4e-201, P = 9.4e-201
 Identities = 410/625 (65%), Positives = 484/625 (77%)

Query:     7 LAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDV 66
             +AG G  T DS+I ++ EI  +  GN  G+FKK+C DL RR+ LL HL+EEIRDS P   
Sbjct:     1 MAG-GAITPDSLIGLIAEINEIP-GNF-GLFKKDCSDLARRVGLLTHLIEEIRDSSPPSE 57

Query:    67 LPXXXXXXXXXLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLE 126
                          WW+DLVV LQA+KRLL+ A  + + +SSD AA++ISFQFQCV WKLE
Sbjct:    58 SDASSSLNSHECDWWSDLVVGLQAAKRLLSSATSFQARESSDGAAKRISFQFQCVTWKLE 117

Query:   127 KALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNH 186
             KALG++ YDR+DIS+EV+EQV LAR QL+RA +RYGS+NS+ F   LS+P+EK+ S +N 
Sbjct:   118 KALGDLTYDRYDISDEVREQVELARLQLRRAMQRYGSLNSKKFSSGLSEPMEKDAS-SNR 176

Query:   187 EVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEI 246
             +V  K   +P+T+ S   D  +  +    + SSVS     S D   E  E +  ++  + 
Sbjct:   177 KVIEKLESIPETVHS-LSDEKKFESPPPWKSSSVSLAFFLSKDGDDERLEKAVTENSDDS 235

Query:   247 KKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT 306
             +K D L IP DFLCPISLELM+DP IV+TGQTYERS+IQRWIDCGN++CPKTQQKLE+ T
Sbjct:   236 QKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFT 295

Query:   307 LTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSV 366
             LTPNYVLRSLISQWCT HNIEQP G  NG+ K SDGSFRD+SGD+ AI ALV KLSS+S+
Sbjct:   296 LTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQSI 355

Query:   367 EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNLSIYE 425
             E+RR AV+EIRSLSKRSTDNRI+IA+AGAIPVLV LLT+D D  TQE+AVT ILNLSIYE
Sbjct:   356 EDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYE 415

Query:   426 NNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL 485
             +NK LIMLAGA+ SIV +LRAGSMEARENAAATLFSLSL DENKIIIGASGAI ALVDLL
Sbjct:   416 HNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLL 475

Query:   486 QNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRN-CMVDEALTILSVL 544
             Q GS RG+KDAATALFNLCIY GNKGRAVRAGI+  L+KMLTDS +  M DEALTILSVL
Sbjct:   476 QYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVL 535

Query:   545 ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP 604
             ASN  AK AI++A+ IP LI  L+   PRN+ENAAAILL LCKRDTE L  I RLGAV+P
Sbjct:   536 ASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVP 595

Query:   605 LTELTKSGTERAKRKATSLLEHLRK 629
             L EL++ GTERAKRKA SLLE LRK
Sbjct:   596 LMELSRDGTERAKRKANSLLELLRK 620

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1911 (677.8 bits), Expect = 2.3e-197, P = 2.3e-197
 Identities = 401/630 (63%), Positives = 485/630 (76%)

Query:     7 LAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDV 66
             +AG G  +  S+++++ +I  +    G  +FKK+C DL RR+ LL HLLEEIRDS P+D 
Sbjct:     1 MAG-GIVSPASLLDLIADIVEIPLNTG--MFKKDCADLTRRVCLLTHLLEEIRDSTPIDS 57

Query:    67 LPXXXXXXXXXLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLE 126
                          WW+DLVV LQA+KRLL+ A  + + DSSD AA++ISFQFQCV WKLE
Sbjct:    58 AASSSSEND----WWSDLVVGLQAAKRLLSTAR-FQARDSSDGAAKRISFQFQCVTWKLE 112

Query:   127 KALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNH 186
             KAL N+PYD +DIS+EV EQV LARSQL+RA +RYGS+NS  F  ALS+P+E++   +N 
Sbjct:   113 KALSNLPYDLYDISDEVGEQVELARSQLRRAMQRYGSLNSNKFSSALSEPMERD-GFSN- 170

Query:   187 EVKAKANHVPDTIDSECH---DADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSM 243
              +K KA    +++    H   + ++  +   RR SS+S     S D   +  +    K+ 
Sbjct:   171 VIKIKAEEKLESVSETLHFGEEEEKQSSPPLRRSSSISLAYYLSKDADTDRLDKMVNKNT 230

Query:   244 AEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303
              E KK D L IP DFLCP+SLELM+DPVIVATGQTYER+YIQRWIDCGN+TCPKTQQKLE
Sbjct:   231 DESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLE 290

Query:   304 HLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSS 363
             + TLTPNYVLRSLIS+WC  HNIEQP G  NG+ K S        GD+  I ALV++LSS
Sbjct:   291 NFTLTPNYVLRSLISRWCAEHNIEQPAGYINGRTKNS--------GDMSVIRALVQRLSS 342

Query:   364 RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI 423
             RS E+RR AV+EIRSLSKRSTDNRI+IA+AGAIPVLVNLLT++DV TQE+A+T +LNLSI
Sbjct:   343 RSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSI 402

Query:   424 YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVD 483
             YENNK LIM AGA+ SIVQ+LRAG+MEARENAAATLFSLSL DENKIIIG SGAIPALVD
Sbjct:   403 YENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGGSGAIPALVD 462

Query:   484 LLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS-RNCMVDEALTILS 542
             LL+NG+ RG+KDAATALFNLCIY GNKGRAVRAGI++AL+KML+DS R+ MVDEALTILS
Sbjct:   463 LLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILS 522

Query:   543 VLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAV 602
             VLA+N +AK AIVKA+T+P LI +L+T   RN+ENAAAILLSLCKRDTE L  I RLGAV
Sbjct:   523 VLANNQDAKSAIVKANTLPALIGILQTDQTRNRENAAAILLSLCKRDTEKLITIGRLGAV 582

Query:   603 IPLTELTKSGTERAKRKATSLLEHLRKLPQ 632
             +PL +L+K+GTER KRKA SLLE LRK  Q
Sbjct:   583 VPLMDLSKNGTERGKRKAISLLELLRKACQ 612

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 284/641 (44%), Positives = 397/641 (61%)

Query:     4 GFTLAGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGP 63
             G T   + E     +++ V EI+G S  + RG   K   DLVRRI LL    EE+     
Sbjct:     2 GLTNCCSHEELMSRLVDSVKEISGFS--SSRGFIGKIQGDLVRRITLLSPFFEEL----- 54

Query:    64 LDVLPXXXXXXXXXLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISF--QFQCV 121
             +DV           +  +  + +AL +S  L       + G    +  ++ S   +F+ +
Sbjct:    55 IDV---NVELKKDQITGFEAMRIALDSSLELFRSV---NGGSKLFQLFDRDSLVEKFRDM 108

Query:   122 MWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMN---SRNFFHA--LSQP 176
               ++E AL  IPY++ ++SEEV+EQV L   Q KRA ER+   +   S +   A  +  P
Sbjct:   109 TVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQLSHDLAMAENVMDP 168

Query:   177 -------LEKEVSITN-HEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSD 228
                    L +E+ +T   E+K +++ + +   S   D D        R SS+   +   D
Sbjct:   169 DPIILKRLSQELQLTTIDELKKESHAIHEYFLSYDGDPDDCFE----RMSSLLKNLV--D 222

Query:   229 DVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWI 288
              V  E  +         + +    +IP  F CPISLELM+DPVIV+TGQTYERS IQ+W+
Sbjct:   223 FVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL 282

Query:   289 DCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVS 348
             D G+ TCPK+Q+ L H  LTPNYVL+SLI+ WC  + IE P    + +  K  GS     
Sbjct:   283 DAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIGGSSSS-D 341

Query:   349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDV 408
              D   + +L+ KL++ + E++RAA  E+R L+KR+ DNR+ IA+AGAIP+LV LL++ D 
Sbjct:   342 CDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDP 401

Query:   409 MTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
              TQEH+VTA+LNLSI E NKG I+ AGAI  IV++L+ GSMEARENAAATLFSLS++DEN
Sbjct:   402 RTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDEN 461

Query:   469 KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD 528
             K+ IGA+GAI AL+ LL+ G+ RG+KDAATA+FNLCIY GNK RAV+ GI+  L ++L D
Sbjct:   462 KVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKD 521

Query:   529 SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588
             +   MVDEAL IL++L++N E K AI +A +IPVL+ ++RTG PRN+ENAAAIL  LC  
Sbjct:   522 AGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIG 581

Query:   589 DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK 629
             + E L     +GA + L ELT++GT+RAKRKA SLLE +++
Sbjct:   582 NIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQQ 622

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
 Identities = 284/607 (46%), Positives = 385/607 (63%)

Query:    34 RGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPXXXXXXXXXLLWWNDLVVALQASKR 93
             RG  ++ C DL RR+ LL  LL         D LP               L  AL A++ 
Sbjct:    16 RGPLRRPCADLSRRVRLLAPLL---------DHLPASSSSSSST-----PLADALGAARD 61

Query:    94 LLAVACCYSSGDSSDEAAEKISF--QFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLAR 151
             LL        G   D+A    +F  +F  V  ++  AL  +PY+ F + +EVQEQV L  
Sbjct:    62 LLRKT---RDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVH 118

Query:   152 SQLKRATERYGSMN---SRNFFHAL----SQP-LEKEVS--ITNH---EVKAKANHVPDT 198
             SQ +RA+ R    +   S +   AL    S P L   +S  +  H   ++K ++  + + 
Sbjct:   119 SQFQRASTRTDPPDTQLSMDLAWALTDNPSDPALLTRISHKLQLHTMADMKNESIALHNM 178

Query:   199 IDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADF 258
             + S   + D  ++++    SS+  ++   D VV E   N A+ + +   K    IIP +F
Sbjct:   179 VISTAGEPDGCVDQM----SSLLKKL--KDCVVTEDHANDALTTRSASIKHRSPIIPDEF 232

Query:   259 LCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLIS 318
              CPISLELM+DPVIV++GQTYERS IQ+W+D G+ TCPKTQQ L H +LTPN+VL+SLIS
Sbjct:   233 RCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLIS 292

Query:   319 QWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRS 378
             QWC  + IE P    N + KK+  S  D   D   + +L+ +L S + +E+RAA  EIR 
Sbjct:   293 QWCEANGIELPKNKQNSRDKKAAKS-SDY--DHAGLVSLMNRLRSGNQDEQRAAAGEIRL 349

Query:   379 LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIP 438
             L+KR+ +NRI IA+AGAIP+LVNLL++ D  TQEHAVTA+LNLSI+ENNK  I+ + AIP
Sbjct:   350 LAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIP 409

Query:   439 SIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAAT 498
              IV++L+ GSME RENAAATLFSLS++DENK+ IGA+GAIP L++LL +GS RG+KDAAT
Sbjct:   410 KIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAAT 469

Query:   499 ALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKAS 558
             A+FNLCIY GNK RAV+AGI+  L+  L D    M+DEAL++LS+LA NPE KI I ++ 
Sbjct:   470 AIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSE 529

Query:   559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKR 618
              IP L+ +++TG PRN+ENAAAIL  LC  DTE        G    L EL+++GT+RAKR
Sbjct:   530 PIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKR 589

Query:   619 KATSLLE 625
             KA+S+LE
Sbjct:   590 KASSILE 596

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 284/655 (43%), Positives = 396/655 (60%)

Query:     8 AGAGERTADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVL 67
             A A ER A + +E V    G   G  R  ++++ + L RRI LL   +EE+R+    +  
Sbjct:    21 AAAVERVA-AAVEAVAAGAGAGAGEYRNAYRRQLLALSRRIRLLGPFVEELRERRRGE-- 77

Query:    68 PXXXXXXXXXLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISF--QFQCVMWKL 125
                       L     L  AL+A+  LL +      G       E+ S   +FQ V+ +L
Sbjct:    78 -GEGEEEERALA---PLADALEAALALLRLG---REGSRISLVLERDSVMKKFQGVILQL 130

Query:   126 EKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITN 185
             E+AL +IPY+  DIS+EV+EQV L  +QLKRA ER   M    F++ L    +K     N
Sbjct:   131 EQALCDIPYNELDISDEVREQVELVHAQLKRAKERI-DMPDDEFYNDLLSVYDK-----N 184

Query:   186 HEVKAKANHVPDTIDSECH-----DADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAI 240
             ++  A+   +   +  + H     D  Q    L    +S   +  P + +         I
Sbjct:   185 YDPSAELA-ILGRLSEKLHLMTITDLTQESLALHEMVASGGGQD-PGEHIERMSMLLKKI 242

Query:   241 KSMAEIKKPDV-----------------LIIPADFLCPISLELMRDPVIVATGQTYERSY 283
             K   + + PD+                 + IP +F CPISLELM+DPVIV+TGQTYER+ 
Sbjct:   243 KDFVQTQNPDMGPPMASRVLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERAC 302

Query:   284 IQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGS 343
             I++WI  G+ TCP TQQK+    LTPNYVLRSLISQWC  + +E P        + +  +
Sbjct:   303 IEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPP----KRSTQPNKPT 358

Query:   344 FRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL 403
                 S +   I+AL+ KL S   EE+R+A AE+R L+KR+ +NRI IA+AGAIP+L++LL
Sbjct:   359 PACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLL 418

Query:   404 TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLS 463
             ++ D+ TQEHAVTA+LNLSI+E+NK  I+ +GA+PSIV +L+ GSMEARENAAATLFSLS
Sbjct:   419 SSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLS 478

Query:   464 LLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALL 523
             ++DE K+ IG  GAIPALV LL  GS RG+KDAA ALFNLCIY GNKGRA+RAG++  ++
Sbjct:   479 VIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIM 538

Query:   524 KMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
              ++T+    ++DEA+ ILS+L+S+PE K AI  A  +PVL+ ++ +G PRN+ENAAA++L
Sbjct:   539 GLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVML 598

Query:   584 SLCKRDTE--NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL-RKLPQLQQ 635
              LC  +    +LA     G ++PL EL  +GT+R KRKA  LLE + R L Q Q+
Sbjct:   599 HLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERMSRFLVQQQE 653

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 280/646 (43%), Positives = 392/646 (60%)

Query:    15 ADSVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSG-PL--DVLPXXX 71
             A S+I+VV EI  +S  + R   KK C +L RR+ LL  + EEIR+S  P+  D L    
Sbjct:     9 AQSLIDVVNEIAAIS--DYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLM 66

Query:    72 XXXXXXLLWWNDLVVALQASK------------RLLAVACC---------YSSGDSSDEA 110
                       + L    Q SK            +L+ V+           Y   D SDE 
Sbjct:    67 NLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEV 126

Query:   111 AEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFF 170
              E++    + V+ +  +A G +     ++ E++Q   +  +S    A +      ++   
Sbjct:   127 REQV----ELVLSQFRRAKGRVDVSDDELYEDLQS--LCNKSSDVDAYQPVLERVAKKL- 179

Query:   171 HALSQPLEKEVSITNHEVKAKAN-HVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDD 229
             H +  P   + S+  HE+ A +   V + I+        M+ K+ + F     +      
Sbjct:   180 HLMEIPDLAQESVALHEMVASSGGDVGENIEEMA-----MVLKMIKDFVQTEDDNGEEQK 234

Query:   230 VVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWID 289
             V    + N    + A  K P   +IP DF CPISLE+MRDPVIV++GQTYER+ I++WI+
Sbjct:   235 VGVNSRSNGQTSTAASQKIP---VIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIE 291

Query:   290 CGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSG 349
              G+ TCPKTQQ L   TLTPNYVLRSLI+QWC  ++IE P   ++ + +K   SF   + 
Sbjct:   292 GGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKVS-SFSSPA- 349

Query:   350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
             +   IE L+ +L+  + E++R+A  EIR L+KR+ DNR+ IA+AGAIP+LV LL+T D  
Sbjct:   350 EANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSR 409

Query:   410 TQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK 469
              QEH+VTA+LNLSI ENNKG I+ AGAIP IVQ+L+ GSMEARENAAATLFSLS++DENK
Sbjct:   410 IQEHSVTALLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENK 469

Query:   470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
             + IGA GAIP LV LL  G+ RG+KDAATALFNLCIY GNKG+A+RAG+I  L ++LT+ 
Sbjct:   470 VTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEP 529

Query:   530 RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD 589
              + MVDEAL IL++L+S+PE K  I  +  +P L+  +RTG PRN+ENAAA+L+ LC  D
Sbjct:   530 GSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGD 589

Query:   590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQ 635
              ++L    +LG + PL +L  +GT+R KRKA  LLE + +L + Q+
Sbjct:   590 PQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLERISRLAEQQK 635

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 247/634 (38%), Positives = 364/634 (57%)

Query:    17 SVIEVVGEITGMSCGNGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPXXXXXXXX 76
             S++E + +I G      R   +KEC +LVRR+ +L   L+EIR        P        
Sbjct:    59 SIVEFLDQINGY-----RRTQQKECFNLVRRLKILIPFLDEIRGFES----PSCKH---- 105

Query:    77 XLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYDR 136
                + N L     A+K+LL   C   S        E +  +F  +  KL + L   P+D 
Sbjct:   106 ---FLNRLRKVFLAAKKLLET-CSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDE 161

Query:   137 FDISEEVQEQVVLARSQLKRATER---------------YGSMNSRNFFHALSQPLEKEV 181
               IS + ++++     QLK+A  R               +   + RN   A+ + L K++
Sbjct:   162 LMISGDAKDEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKL 221

Query:   182 SI-TNHEVKAKANHVPDTI-DSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSA 239
              + T  ++K +   +   I D    + +   + +E        +   + D++ +   N A
Sbjct:   222 ELQTIDDLKTETIAIQSLIQDKGGLNIETKQHIIELLNKFKKLQGLEATDILYQPVINKA 281

Query:   240 IKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQ 299
             I       K   LI+P +FLCPI+LE+M DPVI+ATGQTYE+  IQ+W D G+ TCPKT+
Sbjct:   282 IT------KSTSLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTR 335

Query:   300 QKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVR 359
             Q+L+HL+L PN+ L++LI QWC  +N + P        K+     ++   D V++  LV 
Sbjct:   336 QELDHLSLAPNFALKNLIMQWCEKNNFKIPE-------KEVSPDSQNEQKDEVSL--LVE 386

Query:   360 KLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAIL 419
              LSS  +EE+R +V ++R L++ + +NR++IA+AGAIP+LV LL+  D   QE+AVT +L
Sbjct:   387 ALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLL 446

Query:   420 NLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIP 479
             NLSI E NK LI   GAIP+I++IL  G+ EAREN+AA LFSLS+LDENK+ IG S  IP
Sbjct:   447 NLSIDEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIP 506

Query:   480 ALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALT 539
              LVDLLQ+G+ RG+KDA TALFNL +   NKGRA+ AGI+  LL +L D    M+DEAL+
Sbjct:   507 PLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALS 566

Query:   540 ILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRL 599
             IL +LAS+PE + AI + S I  L+  +R G P+NKE A ++LL L   ++  +    + 
Sbjct:   567 ILLLLASHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQF 626

Query:   600 GAVIPLTELTKSGTERAKRKATSLLEHLRKLPQL 633
             G    L E+T SGT RA+RKA +L++ + K  Q+
Sbjct:   627 GVYEYLVEITTSGTNRAQRKANALIQLISKSEQI 660

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 7.7e-90, Sum P(3) = 7.7e-90
 Identities = 141/289 (48%), Positives = 196/289 (67%)

Query:   340 SDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVL 399
             S+ + RD+S     ++ LV +L S S++ +R A AE+R L+K + DNRI+I ++GAI +L
Sbjct:   532 SNETRRDLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLL 591

Query:   400 VNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATL 459
             V LL + D  TQE+AVTA+LNLSI +NNK  I  AGAI  ++ +L  GS EA+EN+AATL
Sbjct:   592 VELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATL 651

Query:   460 FSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGII 519
             FSLS+++ENKI IG SGAI  LVDLL NG+ RG+KDAATALFNL I+  NK   V++G +
Sbjct:   652 FSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAV 711

Query:   520 SALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAA 579
               L+ ++ D    MVD+A+ +L+ LA+ PE + AI +   IP+L+ ++  G  R KENAA
Sbjct:   712 RYLIDLM-DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAA 770

Query:   580 AILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
             A LL L          + + GAV PL  L++SGT RA+ KA +LL + R
Sbjct:   771 AALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFR 819

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
 Identities = 163/381 (42%), Positives = 227/381 (59%)

Query:   252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY 311
             + +P DF+CPISL+LM DPVI++TGQTY+R+ I RWI+ G+ TCPKT Q L    + PN 
Sbjct:   303 ITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNR 362

Query:   312 VLRSLISQWCTMHNIEQPIGLA---NGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEE 368
              L++LI QWCT   I          N     +  +   V  +   +  L++ L+  S   
Sbjct:   363 ALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGSQAA 422

Query:   369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK 428
             +  A  EIR L+K   +NR  IA+AGAIP L  LLT+++ + QE++VTA+LNLSIYE NK
Sbjct:   423 QTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIYEKNK 482

Query:   429 GLIMLAG-AIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIG-ASGAIPALVDLL 485
               IM  G  + SIV +L +G ++EA+ENAAATLFSLS + E K  I      + AL  LL
Sbjct:   483 SRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALALLL 542

Query:   486 QNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             QNG+ RG+KDA TAL+NL  +  N  R +  G +S+L+  L +    + +EA   L++L 
Sbjct:   543 QNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEG--VAEEAAGALALLV 600

Query:   546 SNPEAKIAIVKA-STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA-CISRLGAVI 603
                    AI K  S +  L+ ++R G PR KENA A LL LC+     +A  + R  A+ 
Sbjct:   601 RQSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAIA 660

Query:   604 PLTE-LTKSGTERAKRKATSL 623
              L + L  +GT+RA+RKA SL
Sbjct:   661 GLLQTLLFTGTKRARRKAASL 681

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IGI

UNIPROTKB|Q6EUK7 PUB4 "U-box domain-containing protein 4" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 651 (234.2 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
 Identities = 160/385 (41%), Positives = 228/385 (59%)

Query:   254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
             +P +F CPISL+LMRDPV+ +TGQTY+R  I +WI+ G+ TCP + Q L    L PN  L
Sbjct:   297 VPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRAL 356

Query:   314 RSLISQWCTMHNIEQPIGLAN-GK---IKKSDGSFRDVSGDVVAIEALVRKLSSRSVEER 369
             RSLISQWC ++ ++     +N G    +  S  S   +  +      LVR L   S   +
Sbjct:   357 RSLISQWCGVYGLQYDSPESNEGMAECVAASCSSRAAMEANKATARILVRMLEDGSENVK 416

Query:   370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG 429
               A  EIR L+K    NR  IAD GAIP+L  LL ++D M QE+AVTA+LNLSI+E NKG
Sbjct:   417 AVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLLSNDWMAQENAVTALLNLSIFEPNKG 476

Query:   430 LIM-LAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQ 486
              IM   G +  IV +L+ G + EA+ENAAATLFSLS++    K+I+   GA+  L  +L 
Sbjct:   477 RIMEQEGCLRLIVGVLQNGWTTEAKENAAATLFSLSVVHNFKKLIMNEPGAVEELASMLT 536

Query:   487 NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMV-DEALTILSVLA 545
              G++RG+KDA  ALFNL  +  +  R + +  + AL++ L   RN  V +EA   L++L 
Sbjct:   537 KGTSRGKKDAVMALFNLSTHPESSARMLESCAVVALIQSL---RNDTVSEEAAGALALLM 593

Query:   546 SNPEAKIAIVKAST-IPVLIVLLRTGLPRNKENAAAILLSLCKRD----TENLACISRLG 600
               P     +  + T I  L+ L+R G P+ KENA + L  +C+R      + +A I  L 
Sbjct:   594 KQPSIVHLVGSSETVITSLVGLMRRGTPKGKENAVSALYEICRRGGSALVQRVAKIPGLN 653

Query:   601 AVIPLTELTKSGTERAKRKATSLLE 625
              VI    +T +GT+RAK+KA+ +++
Sbjct:   654 TVIQT--ITLNGTKRAKKKASLIVK 676

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9A6	PUB10_ARATH	6, ., 3, ., 2, ., -	0.6597	0.9654	0.9777	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	636
smart00504	63	smart00504, Ubox, Modified RING finger domain	1e-26
pfam04564	73	pfam04564, U-box, U-box domain	2e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-16
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-15
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-12
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-12
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-11
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	9e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	8e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-07
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-06
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	6e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-05
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	5e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-05
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	6e-05
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	6e-05
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	7e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-04
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	0.002

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score =  102 bits (257), Expect = 1e-26
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSL 316
           +FLCPISLE+M+DPVI+ +GQTYERS I++W+   + T P T Q L H  L PN  L+S 
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLL-SHGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 317 ISQW 320
           I +W
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 82.3 bits (204), Expect = 2e-19
 Identities = 32/67 (47%), Positives = 44/67 (65%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
           IP +FL PI+LELM+DPVI+ +G TY+RS I+R +   + T P T++ L H  L PN  L
Sbjct: 1   IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 314 RSLISQW 320
           +  I  W
Sbjct: 61  KEKIDAW 67

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 36/112 (32%), Positives = 64/112 (57%), Gaps = 1/112 (0%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            + ALV  LSS     +R A   + +LS  + DN   + +AG +P LV LL ++D    +
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 413 HAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLS 463
            A+ A+ NL+   E+NK +++ AG +P +V +L + + + ++NA   L +L+
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 2/117 (1%)

Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGS 448
           +  AG +P LV+LL++ D   Q  A  A+ NLS    +N   ++ AG +P++VQ+L++  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 449 MEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504
            E  + A   L +L+   E NK+I+  +G +P LV+LL + +   +K+A  AL NL 
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 434 AGAIPSIVQILRAGSMEARENAAATLFSLSL-LDENKIIIGASGAIPALVDLLQNGSTRG 492
           AG +P++V +L +     +  AA  L +LS   ++N   +  +G +PALV LL++     
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 493 RKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS 546
            K A  AL NL     +    V  AG +  L+ +L  S   +   A   LS LAS
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 69.0 bits (169), Expect = 6e-12
 Identities = 84/331 (25%), Positives = 133/331 (40%), Gaps = 61/331 (18%)

Query: 353 AIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN--LLTTDDVM 409
           A++ L++ L     V  R  A   + +LS +S + +  IADAG IP L+N  +  + + M
Sbjct: 232 AVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFM 291

Query: 410 T-------QEHAVTAILNLSIYENNKGLIM-----------------LAGAIPSIVQILR 445
                   QE+A+ A+ N  I      LI+                   GA+   + +  
Sbjct: 292 QGEFAQALQENAMGALAN--ICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFD 349

Query: 446 AGSMEAR-------ENAAATLFS--LSLLDENKII---------------IGASGAIPAL 481
           + +   R       E     L     + L + +II               +  + A   L
Sbjct: 350 SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVL 409

Query: 482 VDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV--RAGI---ISALLKMLTDSRNCMVDE 536
           V L+   +   +++   AL +LC   G    A+  R G+   IS L       +   V  
Sbjct: 410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAV-A 468

Query: 537 ALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACI 596
            L IL+      E+K AI  A  IP L+ LL TG  + KE++A +L +LC    +  AC+
Sbjct: 469 LLAILT--DEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526

Query: 597 SRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
              GAV  L  L K+G  + +  A   L  L
Sbjct: 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKL 557

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 475 SGAIPALVDLLQNGSTRGRKDAATALFNLCI-YMGNKGRAVRAGIISALLKMLTDSRNCM 533
           +G +PALV LL +     +++AA AL NL      N    V AG + AL+++L      +
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 534 VDEALTILSVLASNPEAKIAIV-KASTIPVLIVLLRTGLPRNKENAAAILLSLC 586
           V  AL  L  LA+ PE    IV +A  +P L+ LL +     ++NA   L +L 
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 70/282 (24%), Positives = 119/282 (42%), Gaps = 61/282 (21%)

Query: 341 DGSFRDVSGDVVAIEALVRKL--SSRSVEERRAAVAEIRSLSKRSTDNRIII-ADAGAIP 397
                D  G + ++   + +L   S S +E+    A +  L+K   + R  I + + A+P
Sbjct: 2   TSEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMP 61

Query: 398 VLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAA 457
           +LV+LL +  +  + +A   +  L   E+ +  ++L G IP ++ +L++GS EA++ AA 
Sbjct: 62  LLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAE 121

Query: 458 TLFSLSL--LDEN---KIIIGASGAIPALVDLLQNGSTRGRK---DAATALFNLC----- 504
            ++++S   L ++   KI     G +P+L D LQ G+ + +        AL NLC     
Sbjct: 122 AIYAVSSGGLSDHVGSKIFS-TEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDG 180

Query: 505 -----------------IYMGNKG---------------------RAVRAGIISALLKML 526
                            +  GN                       + + AG +  LLK+L
Sbjct: 181 FWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL 240

Query: 527 TDSRNCMVDE----ALTILSVLASNPEAKIAIVKASTIPVLI 564
                  V      AL  LS  + + EAK AI  A  IP LI
Sbjct: 241 GQGNEVSVRAEAAGALEALS--SQSKEAKQAIADAGGIPALI 280

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 85/289 (29%), Positives = 125/289 (43%), Gaps = 68/289 (23%)

Query: 336 KIKKSDGSFRDVSGDVVAIE-ALVRKLSSRS---VEERR-AAVAEIRS---LSKRSTDNR 387
               S  S R    D   IE  LV+ L  R    V+ER   A+A +     LS++     
Sbjct: 347 VFDSSAESTRAF--DPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRK----- 399

Query: 388 IIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRA- 446
             +  A A  VLV L+T      QE  + A+ +L      KG +  A      VQ+L + 
Sbjct: 400 --LNHAEAKKVLVGLITMATADVQEELIRALSSLC---CGKGGLWEALGGREGVQLLISL 454

Query: 447 ---GSMEARENAAATLFSLS-LLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN 502
               S + +E A A L  L+  +DE+K  I A+G IP LV LL+ GS + ++D+AT L+N
Sbjct: 455 LGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWN 514

Query: 503 LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPV 562
           LC +                     D R C                     +  A  +P 
Sbjct: 515 LCCHS-------------------EDIRAC---------------------VESAGAVPA 534

Query: 563 LIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS 611
           L+ LL+ G P+ +E AA  L  L +  T + A IS+L A++ L +L +S
Sbjct: 535 LLWLLKNGGPKGQEIAAKTLTKLVR--TADAATISQLTALL-LGDLPES 580

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 61.7 bits (150), Expect = 9e-10
 Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 20/249 (8%)

Query: 372  AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI 431
            A+  +  L++ S  N++ +A+AGA+  L   L+     + E A + +L   I  ++  L 
Sbjct: 1168 ALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLR--ILFSSPELR 1225

Query: 432  ---MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG 488
                  GA+  +V +LR GS  AR +AA  L  L   +  +    A  A+  LV++L  G
Sbjct: 1226 RHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTG 1285

Query: 489  STRGRKDAATALFNLCIYMGNKGRA-----VRAGIISALLKMLTDSRNCMVD---EALTI 540
            S   +  A  AL  L    GN  +A     V    +  L K+L  S +  ++   +A  +
Sbjct: 1286 SESEQHAAIGALIKLS--SGNPSKALAIADVEGNALENLCKIL--SSDSSLELKEDAAEL 1341

Query: 541  LSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA-CISRL 599
              VL +N   +     A  I  LI LL +     +E     L  L   D E LA  ++  
Sbjct: 1342 CRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLL--DDEQLAELVAAH 1399

Query: 600  GAVIPLTEL 608
            GAV+PL  L
Sbjct: 1400 GAVVPLVGL 1408

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 58.6 bits (142), Expect = 8e-09
 Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 12/189 (6%)

Query: 436 AIPSIVQILRAGSMEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQNGSTRGR 493
           A+P +V +LR+G++ A+ NAAA L  L   ++   K+++G  G IP L+ LL++GS   +
Sbjct: 59  AMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLG--GCIPPLLSLLKSGSAEAQ 116

Query: 494 KDAATALF--NLCIYMGNKGRA--VRAGIISALLKMLTDSRNC--MVDEALT-ILSVLAS 546
           K AA A++  +      + G       G++ +L   L        +V+  LT  L  L  
Sbjct: 117 KAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCG 176

Query: 547 NPEAK-IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPL 605
           + +    A ++A  + +L+ LL +G    + NAA++L  L      +++ +   GAV  L
Sbjct: 177 STDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQL 236

Query: 606 TELTKSGTE 614
            +L   G E
Sbjct: 237 LKLLGQGNE 245

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 87/324 (26%), Positives = 133/324 (41%), Gaps = 46/324 (14%)

Query: 337  IKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRS-------LSKRSTDNRII 389
            I   D   +    +   IE L  KL+S     R+A   +  S       L+    D  ++
Sbjct: 984  IASHDAKSKLAIMEAGGIEVLTEKLASY-TSNRQAEFEDSESIWISALLLAILFQDRDVV 1042

Query: 390  IADA--GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL--IMLAGAIPSIVQILR 445
             A A   AIP L NLL +++ + +  A  A+ +L    +   L  +  +GA+  ++ +L 
Sbjct: 1043 RAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLL- 1101

Query: 446  AGSMEARENAAATL---FSL----------SLLDENKIIIGASG--AIPALVDLLQNGST 490
             G  E+  +    L   FSL           L     I +GA+   AIP LVDLL+    
Sbjct: 1102 -GCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLK--PI 1158

Query: 491  RGRKDAATALFNLCIYM-----GNKGRAVRAGIISALLKMLTDSRNCMVDEALT-ILSVL 544
              R  A      L   +      NK     AG + AL K L+       +EA + +L +L
Sbjct: 1159 PDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRIL 1218

Query: 545  ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK----RDTENLACISRLG 600
             S+PE +        +  L+ +LR G    + +AA  L  L      RD+E LA      
Sbjct: 1219 FSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSE-LAR----Q 1273

Query: 601  AVIPLTELTKSGTERAKRKATSLL 624
            AV PL E+  +G+E  +  A   L
Sbjct: 1274 AVQPLVEMLNTGSESEQHAAIGAL 1297

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 71/308 (23%), Positives = 112/308 (36%), Gaps = 56/308 (18%)

Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
           I  LV+ L + S + +  +   + +L   S D R  +  AGA+P L+ LL       QE 
Sbjct: 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEI 549

Query: 414 AVTAILNLSIYENNKGLI-----MLAG--------------------------------- 435
           A   +  L +   +   I     +L G                                 
Sbjct: 550 AAKTLTKL-VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAN 608

Query: 436 -AIPSIVQILRAGSMEARENAA---ATLFSLSLLDENKIIIGASG---AIPALVDLLQNG 488
            A+ +++Q+L +   E +E AA   A +FS       + +  +      I   + LL N 
Sbjct: 609 DALRTLIQLLSSSKEETQEKAASVLADIFSS-----RQDLCESLATDEIINPCIKLLTNN 663

Query: 489 STRGRKDAATALFNL--CIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546
           +      +A AL  L   I    K        I  L+K+   S   + ++A+  L+ L S
Sbjct: 664 TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723

Query: 547 NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR---DTENLACISRLGAVI 603
           +PE     +    I  L  +LR G    K NAA  L  L K    D      +   G V+
Sbjct: 724 DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVL 783

Query: 604 PLTELTKS 611
            L +L  S
Sbjct: 784 ALVDLLNS 791

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 383 STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLS 422
           S +N+  + +AGA+P LV LL++ D   QE A  A+ NL+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLP 572
           ++AG + AL+ +L+ S   +  EA   LS L++   +   A+V+A  +P L+ LL++   
Sbjct: 4   IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE 63

Query: 573 RNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
              + A   L +L     +N   +   G V  L  L  S  E  ++ AT  L +L
Sbjct: 64  EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 466 DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504
            ENK  +  +GA+P LV LL +     +++AA AL NL 
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 79/305 (25%), Positives = 135/305 (44%), Gaps = 37/305 (12%)

Query: 353  AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD--AGAIPVLVNLLTTDDVM- 409
            A++ LV  L++ S  E+ AA+  +  LS  +    + IAD    A+  L  +L++D  + 
Sbjct: 1274 AVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLE 1333

Query: 410  TQEHAVTAILNLSIYENNK--GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE 467
             +E A  A L   ++ N +       A  I  ++ +L + S  A+E     L  L   ++
Sbjct: 1334 LKEDA--AELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQ 1391

Query: 468  NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA------VRAGIISA 521
               ++ A GA+  LV L+   +    + A +AL    I +G K R       V+AGII  
Sbjct: 1392 LAELVAAHGAVVPLVGLVVGTNYVLHEAAISAL----IKLG-KDRPPCKLDMVKAGIIER 1446

Query: 522  LLKMLT---DSRNCMVDEALTIL---SVLASNPEAKIAIVKASTIPVLIVLLRTGL-PRN 574
            +L +L    DS    + E L IL   S +A    A   +V+    P+ ++L R  L    
Sbjct: 1447 VLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSA-AKVVE----PLFLLLTRPDLGTWG 1501

Query: 575  KENAAAILLSLCK----RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
            + +A   L+++ +      +  L       A+ PL  L +S ++  ++ A  LL HL   
Sbjct: 1502 QHSALQALVNILEKPQCLASLTLTPSQ---AIEPLIPLLESPSQAVQQLAAELLSHLLAE 1558

Query: 631  PQLQQ 635
               QQ
Sbjct: 1559 EHFQQ 1563

Length = 2102

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 249 PDVLIIPADFLCPISLELMRD----PVIVATGQTYERSYIQRWI-DCGNVTCP 296
           P      + F+CPIS E+M D    PV++  G  Y R  +++   + G   CP
Sbjct: 2   PYAHHFHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 383 STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLS 422
             +N+  + DAG +P LV LL ++D    + A  A+ NLS
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 537 ALTILSVLA-SNPEAKIAIVKAS-TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA 594
               L  LA +  EA+ AI   S  +P+L+ LLR+G    K NAAA+L  LCK   E+L 
Sbjct: 35  TTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE--EDLR 92

Query: 595 CISRLGAVI-PLTELTKSGTERAKRKA 620
               LG  I PL  L KSG+  A++ A
Sbjct: 93  VKVLLGGCIPPLLSLLKSGSAEAQKAA 119

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 55/286 (19%)

Query: 376 IRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILN--------------- 420
           + +++  +T    ++ DAGA+P+ + LL++ +   +E AV A+ N               
Sbjct: 139 LTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC 198

Query: 421 ------LSIYENNKGLIML------------------------AGAIPSIVQILRAGSME 450
                 L +  ++   I +                        + A+P + +++ +   E
Sbjct: 199 GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPE 258

Query: 451 ARENAAATLFSLSLLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN 509
              +A   +  LS     KI  +   G    LV+LL + S + +  A  ++ N  I  G+
Sbjct: 259 VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN--IVTGS 316

Query: 510 KGRA---VRAGIISALLKMLTDSRNCMVDEAL-TILSVLASNPEAKIAIVKASTIPVLIV 565
             +    +  G + A   +L+  +  +  EA  TI ++ A N E   A++ A+ IP LI 
Sbjct: 317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376

Query: 566 LLRTG-LPRNKENAAAI--LLSLCKRDTENLACISRLGAVIPLTEL 608
           LL +      KE   AI    S      + +  +   G + PL +L
Sbjct: 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDL 422

Length = 526

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 466 DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504
           DENK  +  +G +PALV+LL++      K+AA AL NL 
Sbjct: 2   DENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 18/224 (8%)

Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDV-MTQEHA 414
           L ++L S  +E++  AV + R L  + T   I  + DAG +P  V  +      M Q  A
Sbjct: 76  LTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEA 135

Query: 415 VTAILNLSIYENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIII 472
             A+ N++     +  +++ AGA+P  +Q+L +   + RE A   L +++   E  +  +
Sbjct: 136 AWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV 195

Query: 473 GASGAIPALVDLLQNGSTRGR--KDAATALFNLCIYMGNKGR------AVRAGIISALLK 524
              GA+  L+ LL + +      ++A   L NLC     +G+      +  +  +  L K
Sbjct: 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC-----RGKNPPPDWSNISQALPILAK 250

Query: 525 MLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLL 567
           ++      ++ +A   +S L+  P  KI A++       L+ LL
Sbjct: 251 LIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294

Length = 526

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 459 LFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGI 518
           L  LS+ DENK  +  +G I  L+ L               LFNL    G + + V  G+
Sbjct: 310 LKKLSIFDENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGL 369

Query: 519 ISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLI--VLLRTGLPRNKE 576
           +  L+ +L +  +  +  AL +L  L+ + +AK        IP+L+  VL  TG   + E
Sbjct: 370 LPKLVSLLDNDNHHGI--ALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLE 427

Query: 577 NAAAIL-LSLCKRDTE 591
             A  + L+L KR+ +
Sbjct: 428 LIALCINLALNKRNAQ 443

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 6/193 (3%)

Query: 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQ 411
            A+  L + + SR  E    A   I  LS    +    + D G    LV LL+ +    Q
Sbjct: 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQ 302

Query: 412 EHAVTAILNLSIYENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI 470
             A+ ++ N+    +++  +++  GA+ +   +L +     R+ A  T+ +++  +  +I
Sbjct: 303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQI 362

Query: 471 -IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR----AGIISALLKM 525
             +  +  IP L+ LL +   + +K+A  A+ N      N+   +R     G I  L  +
Sbjct: 363 QAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDL 422

Query: 526 LTDSRNCMVDEAL 538
           L    N +++ AL
Sbjct: 423 LDVVDNKIIEVAL 435

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 20/75 (26%), Positives = 36/75 (48%)

Query: 553 AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG 612
           A+++A  +P L+ LL +     +  AA  L +L   + +N+  +   G +  L +L KS 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 613 TERAKRKATSLLEHL 627
            E   + A   L +L
Sbjct: 62  DEEVVKAALWALRNL 76

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 3/159 (1%)

Query: 385 DNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQIL 444
           +N+  + + G I  L+ L            +  + NLS     +  ++  G +P +V +L
Sbjct: 318 ENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGLLPKLVSLL 377

Query: 445 RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALV-DLLQNGSTRGRKDAATALFNL 503
              +      A   L+ LS  D+ K +   +  IP L+  +L+    R   +      NL
Sbjct: 378 --DNDNHHGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINL 435

Query: 504 CIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILS 542
            +   N         +  L++     R+ ++ + +  +S
Sbjct: 436 ALNKRNAQLICEGQGLDLLMERALKFRDPLLMKMIRNIS 474

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	636
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.92
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.89
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.86
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.85
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.83
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.76
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.75
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.68
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.65
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.62
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.61
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.6
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.38
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.37
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.23
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.19
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.18
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.13
PRK09687	280	putative lyase; Provisional	99.09
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.05
PRK09687	280	putative lyase; Provisional	99.05
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.99
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.99
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.98
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.96
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.93
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.9
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.89
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.84
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.83
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.79
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.79
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.73
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.69
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.68
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.68
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.53
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.51
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.5
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.48
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.45
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.42
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.36
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.29
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.29
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.28
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.23
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.22
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.19
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.18
PF05536	543	Neurochondrin: Neurochondrin	98.17
PHA02929	238	N1R/p28-like protein; Provisional	98.12
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.1
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.1
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.08
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.06
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.05
PF05536	543	Neurochondrin: Neurochondrin	98.02
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.96
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.96
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.95
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.94
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.93
PTZ00429	746	beta-adaptin; Provisional	97.93
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.89
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.89
TIGR02270	410	conserved hypothetical protein. Members are found	97.88
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.87
PTZ00429	746	beta-adaptin; Provisional	97.86
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.85
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	97.83
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	97.82
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.8
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.79
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.76
PHA02926	242	zinc finger-like protein; Provisional	97.72
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.71
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.7
KOG0289	506	consensus mRNA splicing factor [General function p	97.67
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.65
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	97.64
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.61
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.55
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.52
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.46
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.46
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.45
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.44
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.38
TIGR02270	410	conserved hypothetical protein. Members are found	97.38
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.36
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.35
COG5369	743	Uncharacterized conserved protein [Function unknow	97.32
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.31
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.3
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.3
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.25
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.23
PF14634	44	zf-RING_5: zinc-RING finger domain	97.19
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.19
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.15
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.08
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.04
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.01
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.01
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.0
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.96
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.93
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	96.92
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.88
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.87
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.83
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.81
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.79
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.79
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.72
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.67
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.65
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.62
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.4
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.32
KOG3036	293	consensus Protein involved in cell differentiation	96.3
KOG2660	331	consensus Locus-specific chromosome binding protei	96.23
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.21
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.18
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.12
COG5369	743	Uncharacterized conserved protein [Function unknow	96.05
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.03
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.99
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.99
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	95.94
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.91
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.91
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	95.91
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.79
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.73
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	95.72
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.72
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.67
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.6
PF04641	260	Rtf2: Rtf2 RING-finger	95.58
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.56
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	95.56
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.43
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.42
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	95.39
KOG3036	293	consensus Protein involved in cell differentiation	95.08
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.07
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	95.06
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	95.05
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.96
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.95
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.89
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.82
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.81
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.76
PF05004	309	IFRD: Interferon-related developmental regulator (	94.72
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.71
KOG2979	262	consensus Protein involved in DNA repair [General	94.71
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.69
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	94.66
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	94.56
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.55
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.54
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.52
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.38
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.34
COG5152	259	Uncharacterized conserved protein, contains RING a	94.27
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.17
KOG0567	289	consensus HEAT repeat-containing protein [General	94.11
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.02
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.97
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.96
COG5096	757	Vesicle coat complex, various subunits [Intracellu	93.94
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	93.93
KOG1824	1233	consensus TATA-binding protein-interacting protein	93.62
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	93.58
PF05004	309	IFRD: Interferon-related developmental regulator (	93.52
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.48
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	93.45
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	93.36
KOG4367	699	consensus Predicted Zn-finger protein [Function un	93.36
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	93.28
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.25
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.18
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.97
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.96
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.73
PF08045	257	CDC14: Cell division control protein 14, SIN compo	92.73
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.62
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.51
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	92.33
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	92.33
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.32
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.3
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	92.23
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	92.01
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.98
PF08045	257	CDC14: Cell division control protein 14, SIN compo	91.95
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	91.91
KOG3113	293	consensus Uncharacterized conserved protein [Funct	91.7
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.57
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	91.57
KOG4653	982	consensus Uncharacterized conserved protein [Funct	91.28
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	91.21
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.2
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	91.16
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	90.98
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	90.88
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	90.66
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	90.52
KOG0567	289	consensus HEAT repeat-containing protein [General	90.08
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	90.06
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	89.6
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	88.66
KOG0301	745	consensus Phospholipase A2-activating protein (con	88.63
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	88.37
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	88.32
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	88.23
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	88.18
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	88.1
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	87.88
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	87.4
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	87.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	87.3
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	87.26
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	87.2
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	87.15
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	87.0
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	86.92
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	86.64
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	86.3
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.26
KOG0396	389	consensus Uncharacterized conserved protein [Funct	86.18
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.05
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	86.03
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	85.96
KOG0825	1134	consensus PHD Zn-finger protein [General function	85.93
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	85.65
KOG2062	929	consensus 26S proteasome regulatory complex, subun	85.61
COG5109	396	Uncharacterized conserved protein, contains RING Z	85.52
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	85.23
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	84.98
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	84.09
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	84.07
COG5175	480	MOT2 Transcriptional repressor [Transcription]	83.97
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	83.71
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	83.66
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	83.5
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	83.05
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	82.93
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	82.75
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	82.74
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	82.54
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	82.32
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	82.3
KOG1001	674	consensus Helicase-like transcription factor HLTF/	80.68
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	80.49

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=8.4e-29  Score=298.98  Aligned_cols=281  Identities=24%  Similarity=0.324  Sum_probs=254.1

Q ss_pred             CHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcc
Q 006669          350 DVVAIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYEN  426 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~  426 (636)
                      ....+..+++.|+++  +++.++.|+..|+.+++.+++||..|++ .|+||.|+.+|++++..++++|+.+|.||+.+++
T Consensus        11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~   90 (2102)
T PLN03200         11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED   90 (2102)
T ss_pred             hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence            456799999999977  7899999999999999999999999997 7999999999999999999999999999999999


Q ss_pred             hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC---CchhHHHH-hcCchHHHHhhhccCCH---HHHHHHHHH
Q 006669          427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL---DENKIIIG-ASGAIPALVDLLQNGST---RGRKDAATA  499 (636)
Q Consensus       427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~-~~g~i~~Lv~LL~~~~~---~~k~~A~~a  499 (636)
                      ++..|+..|+|++|+++|++|+++++++|+++|++|+..   ++++..|+ ..|++|+|++++++++.   -.+..++.+
T Consensus        91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A  170 (2102)
T PLN03200         91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA  170 (2102)
T ss_pred             HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999987   44565655 56999999999999853   245667899


Q ss_pred             HHhhhhccchHHH-HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCC-HHHHH
Q 006669          500 LFNLCIYMGNKGR-AVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGL-PRNKE  576 (636)
Q Consensus       500 L~nL~~~~~n~~~-lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke  576 (636)
                      |+|||.+++++.+ ++++|+||.|+++|.++++.+++.|+.+|.+++.+ ++++..+++.|+||.|+++|++++ +.+|+
T Consensus       171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE  250 (2102)
T PLN03200        171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA  250 (2102)
T ss_pred             HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence            9999999999765 57999999999999999999999999999988875 779999999999999999998754 68999


Q ss_pred             HHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCC---------HHHHHHHHHHHHHhhcc
Q 006669          577 NAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGT---------ERAKRKATSLLEHLRKL  630 (636)
Q Consensus       577 ~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~---------~~~k~kA~~lL~~l~~~  630 (636)
                      +|+++|.+||.++++++..+++.|+++.|+.++.+.+         ...++.|.|+|.+|++.
T Consensus       251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg  313 (2102)
T PLN03200        251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG  313 (2102)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999997544         34589999999999873

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=5.9e-27  Score=283.14  Aligned_cols=283  Identities=25%  Similarity=0.317  Sum_probs=251.8

Q ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669          349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      .+.++++.|+++|++++.+.|+.|++.|+++++.+++++..|+++|+||+|+++|++++..++++|+++|.||+.+++++
T Consensus       443 i~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi  522 (2102)
T PLN03200        443 GGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI  522 (2102)
T ss_pred             HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999977665


Q ss_pred             HH-HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh-------------------------------------H
Q 006669          429 GL-IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK-------------------------------------I  470 (636)
Q Consensus       429 ~~-I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~-------------------------------------~  470 (636)
                      .. +.++|+|++|+++|++++++.+++|+++|++|+...++.                                     .
T Consensus       523 r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~  602 (2102)
T PLN03200        523 RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR  602 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence            55 447899999999999999999999999999996332211                                     1


Q ss_pred             HHH-hcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc--
Q 006669          471 IIG-ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS--  546 (636)
Q Consensus       471 ~i~-~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~--  546 (636)
                      ... ..|+++.|+++++++++++++.|+++|.|++.++ +++..++..|+|++|+.+|.+.+.+.+..|+++|.+|+.  
T Consensus       603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~  682 (2102)
T PLN03200        603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI  682 (2102)
T ss_pred             HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence            111 2489999999999999999999999999998765 567889999999999999999999999999999999996  


Q ss_pred             ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 006669          547 NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEH  626 (636)
Q Consensus       547 ~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~  626 (636)
                      ..+++..+++.|+|++|+++|.+.+...++.|+.+|.+++. .++....+...|++++|+.++++|+++.|+.|+++|..
T Consensus       683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~  761 (2102)
T PLN03200        683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQ  761 (2102)
T ss_pred             CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            44556678899999999999999999999999999999998 45677888899999999999999999999999999999


Q ss_pred             hhcccc
Q 006669          627 LRKLPQ  632 (636)
Q Consensus       627 l~~~~~  632 (636)
                      |++...
T Consensus       762 L~~~~~  767 (2102)
T PLN03200        762 LLKHFP  767 (2102)
T ss_pred             HHhCCC
Confidence            887653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3e-26  Score=230.07  Aligned_cols=279  Identities=24%  Similarity=0.384  Sum_probs=260.4

Q ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669          349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      .+..++..|+..+.+...++|..++.+|.+|+.- ++||..|+..|++.+|.++-++.|..+|.++..+|+||....+|+
T Consensus       123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR  201 (550)
T KOG4224|consen  123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR  201 (550)
T ss_pred             EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh
Confidence            3445677888888888889999999999999975 789999999999999999888999999999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcC--chHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASG--AIPALVDLLQNGSTRGRKDAATALFNLCIY  506 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~  506 (636)
                      ..++.+|++|.||.+++++++.++++++.++.+++.+..++..+++.+  .++.||+++.++++++|-.|..||.||+..
T Consensus       202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd  281 (550)
T KOG4224|consen  202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD  281 (550)
T ss_pred             hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc
Confidence            999999999999999999999999999999999999999999999986  999999999999999999999999999999


Q ss_pred             cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q 006669          507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSL  585 (636)
Q Consensus       507 ~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L  585 (636)
                      .+....++++|.+|.++++|+++.....-..+.++.|++-+|-+...|.++|++.+||.+|+.+ +++.|.+|+.+|++|
T Consensus       282 t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnL  361 (550)
T KOG4224|consen  282 TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNL  361 (550)
T ss_pred             chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHH
Confidence            9999999999999999999999888888999999999999999999999999999999999976 467999999999999


Q ss_pred             hccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      +..+..++..+.+.|+++.|.+|+.+|.-.++..-...+..|.
T Consensus       362 Aasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La  404 (550)
T KOG4224|consen  362 AASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA  404 (550)
T ss_pred             hhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence            9988899999999999999999999999999887777766653

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.7e-24  Score=217.59  Aligned_cols=276  Identities=25%  Similarity=0.331  Sum_probs=253.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      +++..+.++-++.+..+|+.|...|.++.. +.+||+.++.+|++|.||.+++++|..+|+.+.+++.|++-+..+++.+
T Consensus       167 GaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L  245 (550)
T KOG4224|consen  167 GALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL  245 (550)
T ss_pred             cchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence            457778887778888999999999999984 7899999999999999999999999999999999999999999999999


Q ss_pred             HHhC--ChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch
Q 006669          432 MLAG--AIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN  509 (636)
Q Consensus       432 ~~~G--~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n  509 (636)
                      ++.|  .++.||.++.++++.++..|.-+|.+|+.+.++...|.++|.+|.+|++|++..-......+.++.|++.++.|
T Consensus       246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN  325 (550)
T KOG4224|consen  246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN  325 (550)
T ss_pred             HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence            9877  99999999999999999999999999999999999999999999999999988777777888999999999999


Q ss_pred             HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          510 KGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       510 ~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      -..++++|.+.+||++|.- ++.+++-.|+.+|+||+. ...++..|.+.|+||.+.+++..++-..++.--+++..|+-
T Consensus       326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL  405 (550)
T ss_pred             ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence            9999999999999999976 566699999999999998 66789999999999999999999988888887777777776


Q ss_pred             cChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          588 RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       588 ~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      + ...+..+.+.|.++.|..+..+.+..++.+|+.+|-+++.
T Consensus       406 ~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  406 N-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS  446 (550)
T ss_pred             c-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence            4 3567788899999999999999999999999999999975

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.6e-23  Score=224.58  Aligned_cols=278  Identities=20%  Similarity=0.272  Sum_probs=248.1

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669          352 VAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKG  429 (636)
Q Consensus       352 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~  429 (636)
                      +.++.+|+.|.. .++..|.+|+++|.+++.++.+.-..++++|++|.++.+|.+++..+++.|+++|.|++. .+..+.
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd  188 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD  188 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence            679999999974 458999999999999999999999999999999999999999999999999999999999 456688


Q ss_pred             HHHHhCChHHHHHHHhcCcH-HHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          430 LIMLAGAIPSIVQILRAGSM-EARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      .+.+.|++++|+.++...+. ....+++|+|.||+....-...+.. ..++|.|..++.+.++.+..+|+|||.+|+-+.
T Consensus       189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~  268 (514)
T KOG0166|consen  189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS  268 (514)
T ss_pred             HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            88999999999999988764 7889999999999987643333333 378999999999999999999999999999655


Q ss_pred             -chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Q 006669          508 -GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLIVLLR-TGLPRNKENAAAILLS  584 (636)
Q Consensus       508 -~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~  584 (636)
                       +.-+.+++.|+++.|+++|...+..++.-|+.++.|++...+.+ +.++..|++|.|..++. +.....|..|+|++.|
T Consensus       269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN  348 (514)
T KOG0166|consen  269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN  348 (514)
T ss_pred             hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence             45666788999999999999888888899999999998876654 56788999999999998 4556789999999999


Q ss_pred             hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++.++.+..+.+++.|.+|.|+.+++++.-+.|+.|+|++.++..
T Consensus       349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS  393 (514)
T ss_pred             hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999998853

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=8.2e-22  Score=211.40  Aligned_cols=285  Identities=26%  Similarity=0.300  Sum_probs=247.6

Q ss_pred             cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCh-HHHHHHHHHHHHhhhCc
Q 006669          347 VSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDV-MTQEHAVTAILNLSIYE  425 (636)
Q Consensus       347 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~-~~~e~Av~aL~nLs~~~  425 (636)
                      ...+.++++.++.++.+++.+++++|+++|.+++.+++..|..+.+.|++++|+.++...+. ....++.++|.||+.+.
T Consensus       147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk  226 (514)
T KOG0166|consen  147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK  226 (514)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence            44567789999999999999999999999999999999999999999999999999987665 78899999999999854


Q ss_pred             chHHHHH-HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH-HhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          426 NNKGLIM-LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII-GASGAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       426 ~~k~~I~-~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                      .....+. -..++|.|..++++.++++...|+|+|.+|+....-+..+ .+.|.++.||++|...+..++.-|++++.|+
T Consensus       227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI  306 (514)
T KOG0166|consen  227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI  306 (514)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence            3222222 2567999999999999999999999999999766555554 5669999999999999988999999999999


Q ss_pred             hhccch-HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 006669          504 CIYMGN-KGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA  580 (636)
Q Consensus       504 ~~~~~n-~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~  580 (636)
                      ....+. .+.++..|+++.|..++.. ....++.+|++++.|++. +.+-.++++++|.+|.|+.+|+++.-++|..|++
T Consensus       307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw  386 (514)
T KOG0166|consen  307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW  386 (514)
T ss_pred             eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence            887766 4556789999999999984 566699999999999987 5667889999999999999999999999999999


Q ss_pred             HHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          581 ILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       581 ~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      ++.|++.++. +....+++.|.+++|+.++...+.+.-..+...|.+|-+..
T Consensus       387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~  438 (514)
T KOG0166|consen  387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG  438 (514)
T ss_pred             HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence            9999987654 56667899999999999998888888899999999886643

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.86  E-value=2.6e-20  Score=186.16  Aligned_cols=283  Identities=22%  Similarity=0.233  Sum_probs=246.6

Q ss_pred             ccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC--hHHHHHHHHHHHHhhh
Q 006669          346 DVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD--VMTQEHAVTAILNLSI  423 (636)
Q Consensus       346 ~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d--~~~~e~Av~aL~nLs~  423 (636)
                      .+..+.+++|.++++|.+++.+++++|+++|.+++.+++..|..+.+.|++.+++.+|.+.-  ..+..++.+.|.||+.
T Consensus       151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR  230 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR  230 (526)
T ss_pred             EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence            35567789999999999999999999999999999999999999999999999999997644  4788999999999997


Q ss_pred             --Cc-chHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH-HhcCchHHHHhhhccCCHHHHHHHHHH
Q 006669          424 --YE-NNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII-GASGAIPALVDLLQNGSTRGRKDAATA  499 (636)
Q Consensus       424 --~~-~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~LL~~~~~~~k~~A~~a  499 (636)
                        ++ .+...|.  .++|.|.+++.+-++++...|+|++.+|+..+..+..+ ...|..+.||++|.+.+..++.-|++.
T Consensus       231 GknP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~  308 (526)
T COG5064         231 GKNPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRS  308 (526)
T ss_pred             CCCCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHh
Confidence              33 3344443  35899999999999999999999999999887666554 455999999999999988889999999


Q ss_pred             HHhhhhccch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH
Q 006669          500 LFNLCIYMGN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKEN  577 (636)
Q Consensus       500 L~nL~~~~~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~  577 (636)
                      +.|+....+. .+.++..|+++.+-.+|+++...++.+|++.+.|+.. +.+..+++++++.+|+|+++|.+..-.+|..
T Consensus       309 vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE  388 (526)
T COG5064         309 VGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE  388 (526)
T ss_pred             hcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            9999877655 5567789999999999999888999999999999966 6677888999999999999999888899999


Q ss_pred             HHHHHHHhhccC---hHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          578 AAAILLSLCKRD---TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       578 A~~~L~~L~~~~---~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      |+|++.|...++   |+....+++.|++++|+.++...+.++-+.|...++++-+.
T Consensus       389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~  444 (526)
T COG5064         389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV  444 (526)
T ss_pred             HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence            999999987654   57778889999999999999888888888888888877554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.85  E-value=6.3e-21  Score=190.46  Aligned_cols=281  Identities=19%  Similarity=0.228  Sum_probs=242.0

Q ss_pred             CCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cc
Q 006669          349 GDVVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-EN  426 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~  426 (636)
                      .+.+.++.+|+++.+. ..-.+.+|++.|.+++.........++++|+||.++.+|.+.+..+++.++++|.|++.+ +.
T Consensus       111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence            4567899999999544 444578999999999988777777888999999999999999999999999999999985 55


Q ss_pred             hHHHHHHhCChHHHHHHHhcCc--HHHHHHHHHHHHHccCCCchhHHH-HhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          427 NKGLIMLAGAIPSIVQILRAGS--MEARENAAATLFSLSLLDENKIII-GASGAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       427 ~k~~I~~~G~I~~Lv~lL~~~~--~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                      .+..+.+.|++.+++.++.+.-  .....++.|+|.||+....-..-- .-..++|.|..|+...++++..+|+||+..|
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl  270 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL  270 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence            6888889999999999998763  578899999999998653211111 1124789999999999999999999999999


Q ss_pred             hhccc-hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHHHHHcCCCHHHHHHHHHH
Q 006669          504 CIYMG-NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLIVLLRTGLPRNKENAAAI  581 (636)
Q Consensus       504 ~~~~~-n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~  581 (636)
                      +-.+. ....+++.|+.+.|+++|..++..+..-|+....|+....+.+ +.+++.|+++.+-.+|.+.....|..|+|+
T Consensus       271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT  350 (526)
T COG5064         271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT  350 (526)
T ss_pred             ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence            87664 4556778999999999999999999999999999999866655 466789999999999988888999999999


Q ss_pred             HHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          582 LLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +.|++.++.+..+.+++.+.+|+|+.++.+..-..|+.|.|++.+...
T Consensus       351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats  398 (526)
T COG5064         351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS  398 (526)
T ss_pred             ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999999988753

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.83  E-value=4.6e-21  Score=156.36  Aligned_cols=72  Identities=51%  Similarity=0.934  Sum_probs=63.6

Q ss_pred             CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcc
Q 006669          254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHN  325 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~  325 (636)
                      +|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++...+++||..+|+.|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            699999999999999999999999999999999999888999999999999999999999999999999874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.76  E-value=1.3e-16  Score=180.37  Aligned_cols=255  Identities=21%  Similarity=0.245  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHh
Q 006669          366 VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILR  445 (636)
Q Consensus       366 ~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~  445 (636)
                      ....+.++..|.+++. ++.+...+...|.|+.|+++|.+++.++...+++.|.+||.+.+||..|.+.|+|+.|++++.
T Consensus       263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence            3445567788999995 778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHH
Q 006669          446 AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKM  525 (636)
Q Consensus       446 ~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~l  525 (636)
                      +++.+.+..++.+|+|||++++.|..|++.|.+|.|+.+|.+++  .+..++..|+|||..+++|..+...+++|.++++
T Consensus       342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~  419 (708)
T PF05804_consen  342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM  419 (708)
T ss_pred             CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence            99999999999999999999999999999999999999998654  4566899999999999999999999999999998


Q ss_pred             hcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHH
Q 006669          526 LTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP  604 (636)
Q Consensus       526 L~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~  604 (636)
                      +.. ++..+...+++++.||+.++.+.+.|.+.++++.|++.......   .....++.|++.+++.....+.  +.+..
T Consensus       420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~  494 (708)
T PF05804_consen  420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGD  494 (708)
T ss_pred             HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHH
Confidence            755 55556667889999999999999999999999999987654332   1245789999998865555444  46888


Q ss_pred             HHHhhhcC-CHHHHHHHHHHHHHhh
Q 006669          605 LTELTKSG-TERAKRKATSLLEHLR  628 (636)
Q Consensus       605 L~~Ll~~g-~~~~k~kA~~lL~~l~  628 (636)
                      |+.++.++ ++...-.+..+|.+|.
T Consensus       495 L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  495 LAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            88888775 5666777888888774

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.75  E-value=3.7e-16  Score=176.69  Aligned_cols=279  Identities=22%  Similarity=0.284  Sum_probs=223.5

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      .++.++.|++.|.+++.+....++..|++|+- ..+|+..+.+.|+|+.|++++.+++...+..++.+|.|||.+++.+.
T Consensus       288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~  366 (708)
T PF05804_consen  288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS  366 (708)
T ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            35679999999999999999999999999996 57899999999999999999999999999999999999999999999


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccc
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~  508 (636)
                      .|++.|++|.|+.+|.+++  .+..+..+|.+||.++++|..+...+++|.+++++-++ ++++...++.++.||+.++.
T Consensus       367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r  444 (708)
T PF05804_consen  367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR  444 (708)
T ss_pred             HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence            9999999999999998654  55679999999999999999999899999999987654 45566667777777777776


Q ss_pred             hHHHHHHhchHHHHHHHh-------------------------------------cC-CCHHHHHHHHHHHHHH------
Q 006669          509 NKGRAVRAGIISALLKML-------------------------------------TD-SRNCMVDEALTILSVL------  544 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL-------------------------------------~~-~~~~~~~~Al~~L~~L------  544 (636)
                      |...+.+.|+++.|++..                                     .. .+++..-+++++|+||      
T Consensus       445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld  524 (708)
T PF05804_consen  445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD  524 (708)
T ss_pred             HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence            666666655555444321                                     11 1223333455555555      


Q ss_pred             --------------------------------------hcChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHH
Q 006669          545 --------------------------------------ASNPEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLS  584 (636)
Q Consensus       545 --------------------------------------a~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~  584 (636)
                                                            |..+.+...+.+.|.++.|+++|...  +.+..-..+.++..
T Consensus       525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~  604 (708)
T PF05804_consen  525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ  604 (708)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence                                                  34444556667889999999999864  46677778888888


Q ss_pred             hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      +..+.......+.+.+++..|+.++++.++.+++-|..+|..+..+.
T Consensus       605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            88876544444456889999999999999999999999999987654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.68  E-value=1.1e-15  Score=169.03  Aligned_cols=282  Identities=23%  Similarity=0.247  Sum_probs=228.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh---CcchH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI---YENNK  428 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~---~~~~k  428 (636)
                      ..++..+.+|.+.++..|-.|+..|..++..+...|..+.+.|+|+.||.+|.+.+.++|.+|+.+|.||+.   .++||
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            357889999999999999999999999999999999999999999999999999999999999999999987   34689


Q ss_pred             HHHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC--------------CHHHH
Q 006669          429 GLIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG--------------STRGR  493 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~--------------~~~~k  493 (636)
                      ..|.+.++|+.++++|+. ++.+++++...+|+||++.|..|..|... ++..|.+.+-..              ...+.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence            999999999999999997 69999999999999999998888777654 445555443211              14567


Q ss_pred             HHHHHHHHhhhh-ccchHHHHHH-hchHHHHHHHhc------CCCHHHHHHHHHHHHHHhcChh------h---------
Q 006669          494 KDAATALFNLCI-YMGNKGRAVR-AGIISALLKMLT------DSRNCMVDEALTILSVLASNPE------A---------  550 (636)
Q Consensus       494 ~~A~~aL~nL~~-~~~n~~~lv~-~g~v~~Lv~lL~------~~~~~~~~~Al~~L~~La~~~~------~---------  550 (636)
                      .++..+|.|++. ..+.|.++.+ .|.|..|+..+.      +.+...+++|+.+|.||+-.-+      .         
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            899999999987 5678999988 899999999886      2577889999999999974211      0         


Q ss_pred             ------------------HH---------------------HHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhccCh
Q 006669          551 ------------------KI---------------------AIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       551 ------------------~~---------------------~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                                        +.                     ..+...+|..-+.+|. +.++.+.|.++.+|-||+....
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                              00                     0111122333233444 4568899999999999998654


Q ss_pred             ----HHHHHH-HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcccccc
Q 006669          591 ----ENLACI-SRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQ  634 (636)
Q Consensus       591 ----~~~~~i-~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~~  634 (636)
                          ..+..+ .++.+.++|++|++++++++.+.+..+|++|++-..++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk  600 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNK  600 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhh
Confidence                334444 67899999999999999999999999999998765444

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=7.3e-14  Score=140.27  Aligned_cols=276  Identities=17%  Similarity=0.229  Sum_probs=233.4

Q ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcch-
Q 006669          352 VAIEALVRKLS--SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENN-  427 (636)
Q Consensus       352 ~~i~~Lv~~L~--s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~-  427 (636)
                      .+...++..|.  ..+.+.....+..++.-+..++.||..+.+.+..+.+...|.. +...+...+.+++.-|..+++. 
T Consensus       145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR  224 (461)
T KOG4199|consen  145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR  224 (461)
T ss_pred             ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence            34666777764  4566777778888888888899999999999999999977754 4446788888999988765432 


Q ss_pred             ---------HHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCC----HHHH
Q 006669          428 ---------KGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGS----TRGR  493 (636)
Q Consensus       428 ---------k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~----~~~k  493 (636)
                               ...|...|++..|++.++-+ +|.....+..+|..|+..++.+..|.+.|++..|+.++.+.+    ....
T Consensus       225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~  304 (461)
T KOG4199|consen  225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA  304 (461)
T ss_pred             eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence                     35577788999999999987 688899999999999999999999999999999999998743    2345


Q ss_pred             HHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCC
Q 006669          494 KDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTG  570 (636)
Q Consensus       494 ~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~  570 (636)
                      +.++..|..|+.+++++..+++.|+.+.++.++..  .++.+.+.++.++..||- .|+.-..+++.|+-...++-|+..
T Consensus       305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah  384 (461)
T KOG4199|consen  305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH  384 (461)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence            77888899999999999999999999999999843  788999999999999986 688888889999999999999854


Q ss_pred             --CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          571 --LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       571 --s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                        ....+.+|++.+.|+..++.+++..++.. +++.|+...+..++.+...|..+||-|-
T Consensus       385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  385 PVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLG  443 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence              36788999999999999998888887776 5788888888899999999999999874

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.63  E-value=1.2e-14  Score=161.11  Aligned_cols=283  Identities=23%  Similarity=0.255  Sum_probs=225.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcch
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD--NRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENN  427 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~--~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~  427 (636)
                      .+.|+.||.+|.+.+.++|..|+.+|++|...+..  |+..|.+.++|+.++++|+. .|.++++....+|+||+.++..
T Consensus       274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l  353 (717)
T KOG1048|consen  274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL  353 (717)
T ss_pred             hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence            45799999999999999999999999999876555  99999999999999999986 7999999999999999999888


Q ss_pred             HHHHHHhCChHHHHHHHh---cC-----------cHHHHHHHHHHHHHccC-CCchhHHHHhc-CchHHHHhhhcc----
Q 006669          428 KGLIMLAGAIPSIVQILR---AG-----------SMEARENAAATLFSLSL-LDENKIIIGAS-GAIPALVDLLQN----  487 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~---~~-----------~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~-g~i~~Lv~LL~~----  487 (636)
                      |..|+.. ++..|..-+-   +|           +.++..+++.+|.|++. ..+.+.++.+. |.|..|+..++.    
T Consensus       354 K~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~  432 (717)
T KOG1048|consen  354 KMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQK  432 (717)
T ss_pred             HHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHh
Confidence            8877664 3444443321   10           13566788888888877 45667777776 777777766551    


Q ss_pred             --CCHH--------------------------------------------------------------------------
Q 006669          488 --GSTR--------------------------------------------------------------------------  491 (636)
Q Consensus       488 --~~~~--------------------------------------------------------------------------  491 (636)
                        .+..                                                                          
T Consensus       433 ~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e  512 (717)
T KOG1048|consen  433 SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSE  512 (717)
T ss_pred             ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCce
Confidence              1122                                                                          


Q ss_pred             ----------------------HHHHHHHHHHhhhhccc-----hHHHH-HHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006669          492 ----------------------GRKDAATALFNLCIYMG-----NKGRA-VRAGIISALLKMLTDSRNCMVDEALTILSV  543 (636)
Q Consensus       492 ----------------------~k~~A~~aL~nL~~~~~-----n~~~l-v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~  543 (636)
                                            +.+.++.||.||+....     .+..+ .+..+.+.|+++|..++..++..+..+|.|
T Consensus       513 ~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrN  592 (717)
T KOG1048|consen  513 WLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRN  592 (717)
T ss_pred             eeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhh
Confidence                                  33455566666654331     12223 345577899999999999999999999999


Q ss_pred             HhcChhhHHHHHhcCcHHHHHHHHcCCC------HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC-CHHH
Q 006669          544 LASNPEAKIAIVKASTIPVLIVLLRTGL------PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG-TERA  616 (636)
Q Consensus       544 La~~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g-~~~~  616 (636)
                      |+.++.++..|. .++++.|++.|..+.      +.+-..++.+|+++...+..+...+.+.+++++|+.+..+. ++++
T Consensus       593 ls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~  671 (717)
T KOG1048|consen  593 LSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE  671 (717)
T ss_pred             hccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence            999999999998 689999999998532      56777889999999999999999999999999999998774 6799


Q ss_pred             HHHHHHHHHHhhccccccc
Q 006669          617 KRKATSLLEHLRKLPQLQQ  635 (636)
Q Consensus       617 k~kA~~lL~~l~~~~~~~~  635 (636)
                      -+.|..+|..|+.+.+++.
T Consensus       672 ~kaAs~vL~~lW~y~eLh~  690 (717)
T KOG1048|consen  672 FKAASSVLDVLWQYKELHF  690 (717)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999998887753

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.62  E-value=9e-15  Score=167.27  Aligned_cols=260  Identities=23%  Similarity=0.255  Sum_probs=221.8

Q ss_pred             HHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC---------CC---hHHHHHHHHHHHHhhh-CcchHHHHHH-hCC
Q 006669          371 AAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT---------DD---VMTQEHAVTAILNLSI-YENNKGLIML-AGA  436 (636)
Q Consensus       371 ~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s---------~d---~~~~e~Av~aL~nLs~-~~~~k~~I~~-~G~  436 (636)
                      .|+..|-.++. ++++|..+.+.|++..+-.||.-         .+   ..++..|..+|.||.. +..||..+.. .|+
T Consensus       317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf  395 (2195)
T KOG2122|consen  317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF  395 (2195)
T ss_pred             HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence            67777777776 68999999999998888887741         11   3578899999999998 6678887765 799


Q ss_pred             hHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHH-HhcCchHHHHhh-hccCCHHHHHHHHHHHHhhhhc-cchHHH
Q 006669          437 IPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIII-GASGAIPALVDL-LQNGSTRGRKDAATALFNLCIY-MGNKGR  512 (636)
Q Consensus       437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i-~~~g~i~~Lv~L-L~~~~~~~k~~A~~aL~nL~~~-~~n~~~  512 (636)
                      +..+|..|.+...+..+--+.+|.||+... .|-..+ .+.|-+..|+.. |+.......+..+.||+||+.+ .+||..
T Consensus       396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~  475 (2195)
T KOG2122|consen  396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE  475 (2195)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence            999999999998899999999999999764 354444 445999998876 5555667889999999999865 489999


Q ss_pred             HHH-hchHHHHHHHhcC----CCHHHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669          513 AVR-AGIISALLKMLTD----SRNCMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL  583 (636)
Q Consensus       513 lv~-~g~v~~Lv~lL~~----~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  583 (636)
                      |.+ .|++..||.+|..    ..-.+++.|-+||.|+++    +++.|+.+.+.+++..|++.|++.+-.+.-+++.+||
T Consensus       476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW  555 (2195)
T KOG2122|consen  476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW  555 (2195)
T ss_pred             hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence            998 8999999999964    345788999999999876    6778888899999999999999999889999999999


Q ss_pred             HhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          584 SLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       584 ~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      ||...+++..+.+++.|+++-|..|+++.+.-.-+-++.+|+++-.++
T Consensus       556 NLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  556 NLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            999999999999999999999999999999888888888888886554

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=2.9e-13  Score=135.97  Aligned_cols=268  Identities=21%  Similarity=0.269  Sum_probs=223.0

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--CCChHHHHHHHHHHHHhhh-CcchHHHHHHh
Q 006669          358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT--TDDVMTQEHAVTAILNLSI-YENNKGLIMLA  434 (636)
Q Consensus       358 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~--s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~  434 (636)
                      ...-.+++.....+++..|..+....|+    +.++-+...++.+|.  .++.++....+..+..-+. ++.||..+++.
T Consensus       113 ~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~  188 (461)
T KOG4199|consen  113 LELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMEL  188 (461)
T ss_pred             HHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            3334567777888999999999876654    455667888899885  3556666667777776666 89999999999


Q ss_pred             CChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCch----------hHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHh
Q 006669          435 GAIPSIVQILRA-GSMEARENAAATLFSLSLLDEN----------KIIIGASGAIPALVDLLQNG-STRGRKDAATALFN  502 (636)
Q Consensus       435 G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~----------~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~n  502 (636)
                      ++++.+...|.. |-..+...+.+++..|..+++.          ...|+..|++..|++.++-+ +|.....+..+|..
T Consensus       189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~  268 (461)
T KOG4199|consen  189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKA  268 (461)
T ss_pred             hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHH
Confidence            999999977754 5456778889999998877754          44667778899999999876 67888899999999


Q ss_pred             hhhccchHHHHHHhchHHHHHHHhcC-CCH---HHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc--CCCHHHHH
Q 006669          503 LCIYMGNKGRAVRAGIISALLKMLTD-SRN---CMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR--TGLPRNKE  576 (636)
Q Consensus       503 L~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~---~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~--~~s~~~ke  576 (636)
                      |+..++.+..+.+.|++..|++++.+ ...   .+...++..|..|+.+.+.+..|++.|+.+.++.++.  +.+|.+-+
T Consensus       269 lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~  348 (461)
T KOG4199|consen  269 LAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQ  348 (461)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHH
Confidence            99999999999999999999999977 333   3556789999999999999999999999999998775  46799999


Q ss_pred             HHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhc
Q 006669          577 NAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG--TERAKRKATSLLEHLRK  629 (636)
Q Consensus       577 ~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g--~~~~k~kA~~lL~~l~~  629 (636)
                      .+..++.-||-..|++...+++.|+-...++-++..  ...++++|.+++|+|..
T Consensus       349 ~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~  403 (461)
T KOG4199|consen  349 EVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV  403 (461)
T ss_pred             HHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888764  45679999999999854

>smart00504 Ubox Modified RING finger domain

Probab=99.60  E-value=5.9e-16  Score=122.83  Aligned_cols=63  Identities=54%  Similarity=0.963  Sum_probs=60.1

Q ss_pred             cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHH
Q 006669          257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQW  320 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w  320 (636)
                      +|.||||+++|+|||+.+|||+|||.+|.+|+.. +.+||.|+++++..++.||..+|+.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5889999999999999999999999999999986 67899999999999999999999999988

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=1.8e-12  Score=131.09  Aligned_cols=194  Identities=22%  Similarity=0.272  Sum_probs=170.9

Q ss_pred             HhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh
Q 006669          391 ADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK  469 (636)
Q Consensus       391 ~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~  469 (636)
                      .+++.+..|+.+|.. .|+.+++.|..++.|.+.++.++..|.+.|+++.+..+|.++++.+++.|+.+|.|++...+|+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            556778899999985 6899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCchHHHHhhhccC--CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669          470 IIIGASGAIPALVDLLQNG--STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN  547 (636)
Q Consensus       470 ~~i~~~g~i~~Lv~LL~~~--~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  547 (636)
                      ..|-.  .++.+.+.+.+.  +..++..++++|.||+..++.+..+.  +.++.++++|..++..++..++.+|.||+.+
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            88754  577777765554  56888999999999998877766664  4799999999999999999999999999999


Q ss_pred             hhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhcc
Q 006669          548 PEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKR  588 (636)
Q Consensus       548 ~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~  588 (636)
                      |.....++.+.++..++.++... +...-..++.+..|+..+
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            99999999999999999999875 566778888888888653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=2.9e-12  Score=129.52  Aligned_cols=194  Identities=21%  Similarity=0.285  Sum_probs=172.9

Q ss_pred             CCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch
Q 006669          349 GDVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN  427 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~  427 (636)
                      .+...++.|+..|++ .++.+++.|+..+.+.+. .+.++..|.+.|+++.+.++|.++++.+++.|+.+|.||+.+.+|
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            345678999999984 689999999999999875 679999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669          428 KGLIMLAGAIPSIVQILRAG--SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI  505 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~  505 (636)
                      +..|-.  .++.+++...+.  +.+.+..+.+.|.+|+..+++...+.  +.++.++.+|..|+..+|..++++|.||+.
T Consensus        88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            988743  578888766554  67899999999999999988877765  479999999999999999999999999999


Q ss_pred             ccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC
Q 006669          506 YMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASN  547 (636)
Q Consensus       506 ~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~  547 (636)
                      ++.+...++.++++..++.++.. .+.++...++.+..||..+
T Consensus       164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            99999999999999999999976 5788889999999999774

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.38  E-value=5.6e-12  Score=144.94  Aligned_cols=227  Identities=22%  Similarity=0.217  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch-HHHHHHhCChHHHHH
Q 006669          366 VEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN-KGLIMLAGAIPSIVQ  442 (636)
Q Consensus       366 ~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~-k~~I~~~G~I~~Lv~  442 (636)
                      ...++.|...|-+|...+..|+..+... |++..+|..|.+...+++.-...+|.||++ .+.| |+.+-+.|-+..|+.
T Consensus       365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~  444 (2195)
T KOG2122|consen  365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA  444 (2195)
T ss_pred             HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence            3467889999999999999999988764 999999999998777888888899999999 3444 666777899999988


Q ss_pred             H-HhcCcHHHHHHHHHHHHHccCC-CchhHHHHhc-CchHHHHhhhccC----CHHHHHHHHHHHHhhhh----ccchHH
Q 006669          443 I-LRAGSMEARENAAATLFSLSLL-DENKIIIGAS-GAIPALVDLLQNG----STRGRKDAATALFNLCI----YMGNKG  511 (636)
Q Consensus       443 l-L~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~----~~~n~~  511 (636)
                      . |+..........+.+||||+.. .+||..|..- |++..||.+|.-.    +..+.+.|-+.|.|.+.    +.+.|+
T Consensus       445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ  524 (2195)
T KOG2122|consen  445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ  524 (2195)
T ss_pred             HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence            6 5555667778889999999866 6799999987 9999999999743    45677888889998754    456688


Q ss_pred             HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669          512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                      .+.+.+.+..|++.|++.+-.++.+++++||||+. +++.++.+++.|+|+.|..++++.+..+-+-++++|.||..+.+
T Consensus       525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            88889999999999999999999999999999976 78899999999999999999999999999999999999987765


Q ss_pred             HH
Q 006669          591 EN  592 (636)
Q Consensus       591 ~~  592 (636)
                      ..
T Consensus       605 Ak  606 (2195)
T KOG2122|consen  605 AK  606 (2195)
T ss_pred             hh
Confidence            43

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.37  E-value=2.5e-10  Score=127.58  Aligned_cols=274  Identities=18%  Similarity=0.202  Sum_probs=218.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      ...+.|...|.++++.++..+++.|.++..++......+.+.+.++.++.++.++|..+...|+.+|.+|+.++..-..+
T Consensus        77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l  156 (503)
T PF10508_consen   77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL  156 (503)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence            45788899999999999999999999999887776777788899999999999999999999999999999988887788


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK  510 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~  510 (636)
                      ...+.+..|..++...+..+|..+..++.+++..++. ...+...|.++.++..+.+.+.-++.+++..|..|+..+.+.
T Consensus       157 ~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~  236 (503)
T PF10508_consen  157 FDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL  236 (503)
T ss_pred             hCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence            8888899999999887888899999999999876554 455556699999999999988889999999999999988999


Q ss_pred             HHHHHhchHHHHHHHhcCC--CH---H-HHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669          511 GRAVRAGIISALLKMLTDS--RN---C-MVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL  583 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~--~~---~-~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  583 (636)
                      ..+.+.|+++.|+.++.+.  ++   . +.--.+....+++.. |..... .-..++..|.+++.+.++..+..|..++.
T Consensus       237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg  315 (503)
T PF10508_consen  237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLG  315 (503)
T ss_pred             HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            9999999999999999652  22   1 222334566667764 221111 11234566667777888999999999999


Q ss_pred             HhhccChHHHHHH-HH-cCC----hHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          584 SLCKRDTENLACI-SR-LGA----VIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       584 ~L~~~~~~~~~~i-~~-~G~----i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      .+|+.. +....+ .. .+.    +...-....+|+...|.++...|..+
T Consensus       316 ~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i  364 (503)
T PF10508_consen  316 QIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI  364 (503)
T ss_pred             HHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            999744 444444 33 334    44444455668888999999988887

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.23  E-value=8.9e-10  Score=114.35  Aligned_cols=283  Identities=16%  Similarity=0.139  Sum_probs=217.1

Q ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC----CC---hHHHHHHHHHHHHh
Q 006669          349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT----DD---VMTQEHAVTAILNL  421 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s----~d---~~~~e~Av~aL~nL  421 (636)
                      .+.+.++.|.+..+|++.++-.+..+.|.+.+..+.++|..+.+.|+-..++..|+.    ++   .+...-+...|.|.
T Consensus        84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny  163 (604)
T KOG4500|consen   84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY  163 (604)
T ss_pred             hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence            455678889999999999999999999999999999999999999997777776653    33   24445566778887


Q ss_pred             hh-CcchHHHHHHhCChHHHHHHHhcC--c--------------------------------------------HHHHHH
Q 006669          422 SI-YENNKGLIMLAGAIPSIVQILRAG--S--------------------------------------------MEAREN  454 (636)
Q Consensus       422 s~-~~~~k~~I~~~G~I~~Lv~lL~~~--~--------------------------------------------~e~~~~  454 (636)
                      .. +++.+.+.++.|+++.|...+.-+  +                                            +...+.
T Consensus       164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM  243 (604)
T KOG4500|consen  164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM  243 (604)
T ss_pred             hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence            76 567788899999988776665221  1                                            122223


Q ss_pred             HHHHHHHccCCCchhHHHHhcCchHHHHhhhccC-CHHHH-------HHHHHHHHhhhhccchHHHHHHhc-hHHHHHHH
Q 006669          455 AAATLFSLSLLDENKIIIGASGAIPALVDLLQNG-STRGR-------KDAATALFNLCIYMGNKGRAVRAG-IISALLKM  525 (636)
Q Consensus       455 Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k-------~~A~~aL~nL~~~~~n~~~lv~~g-~v~~Lv~l  525 (636)
                      ...+|...+.++.-+..+++.|.+..+++++++- +...+       +.++....-|...++.-.++.+.+ .+.-++.-
T Consensus       244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence            3445555566666677777888889999998863 22222       223333333445556666666655 78888888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHhhccChHHHHHHHHcC
Q 006669          526 LTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT-----GLPRNKENAAAILLSLCKRDTENLACISRLG  600 (636)
Q Consensus       526 L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-----~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G  600 (636)
                      +.+.+......+.-++.|++...+....+++.+.+..|+++|..     ++-+.+..++++|.|+.. ...+...+..+|
T Consensus       324 ~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aG  402 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAG  402 (604)
T ss_pred             hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccc
Confidence            88888888899999999999999999999999999999998853     456777888999999986 557788899999


Q ss_pred             ChHHHHHhhhcCCHHHHHHHHHHHHHhhcccc
Q 006669          601 AVIPLTELTKSGTERAKRKATSLLEHLRKLPQ  632 (636)
Q Consensus       601 ~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~  632 (636)
                      +.+.++.+++...|++..|-...|++++...+
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence            99999999999999999999999999876543

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.19  E-value=6e-10  Score=99.14  Aligned_cols=117  Identities=27%  Similarity=0.325  Sum_probs=109.9

Q ss_pred             HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669          512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                      .+++.|+++.|++++.+.+..++..++.+|.+++.. ++....+.+.|+++.++.+|.+.+++++..|+++|.+++.+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467889999999999998999999999999999997 8888899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          591 ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       591 ~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      .....+.+.|+++.|..++.+++..+++.|.++|.+|.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            88888899999999999999999999999999999885

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.18  E-value=4.4e-10  Score=99.97  Aligned_cols=117  Identities=32%  Similarity=0.418  Sum_probs=106.6

Q ss_pred             HHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc-cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-
Q 006669          471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP-  548 (636)
Q Consensus       471 ~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~-~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-  548 (636)
                      .+.+.|+++.|+++|.++++..+..++.+|.+++.. ++.+..+++.|+++.++++|.+.+..++..|+++|.+|+.++ 
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            356779999999999999999999999999999987 577888899999999999999999999999999999999976 


Q ss_pred             hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          549 EAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       549 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      .....+.+.|+++.|++++...+..+++.|+++|.+||.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            456667788999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.13  E-value=3.7e-08  Score=110.26  Aligned_cols=282  Identities=16%  Similarity=0.187  Sum_probs=214.1

Q ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch
Q 006669          349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN  427 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~  427 (636)
                      .+.+.++.++..+..++.++...|+..|..+++.. .....+.+.+.++.|..++...+..++..+..++.+++. +++.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence            34557889999999999999999999999999854 455567788889999999988788889999999999987 6677


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHH------HHHHHHHH
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGR------KDAATALF  501 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k------~~A~~aL~  501 (636)
                      ...+.+.|.++.++.-|++.+.-++.+++.+|..|+..+.+...+.+.|.++.|+.++.+.....+      --.+....
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            778888999999999999989999999999999999988899999999999999999976421111      11224445


Q ss_pred             hhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH-Hhc-CcHHHHH----HHHcCCCHHHH
Q 006669          502 NLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAI-VKA-STIPVLI----VLLRTGLPRNK  575 (636)
Q Consensus       502 nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i-~~~-g~i~~Lv----~lL~~~s~~~k  575 (636)
                      +++...+....-.-...+..|.+++.+.+......|+.+|+.+++..+|+..+ ... +.++..+    ....+++...|
T Consensus       275 ~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk  354 (503)
T PF10508_consen  275 NLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELK  354 (503)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHH
Confidence            56554333222112346667777787889999999999999999999999988 443 3444444    44445677889


Q ss_pred             HHHHHHHHHhhccChH----HHHH-------HHHcCChH-HHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          576 ENAAAILLSLCKRDTE----NLAC-------ISRLGAVI-PLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       576 e~A~~~L~~L~~~~~~----~~~~-------i~~~G~i~-~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      ..+..+|.++-...++    ....       ....+-.. .++.+++..=+..|-.|-.+|+.+..++
T Consensus       355 ~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~  422 (503)
T PF10508_consen  355 LRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP  422 (503)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence            9999999888432221    1111       12233344 6667777777999999999999887654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK09687 putative lyase; Provisional

Probab=99.09  E-value=8.1e-09  Score=106.63  Aligned_cols=224  Identities=20%  Similarity=0.120  Sum_probs=153.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHh-hcCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNL-LTTDDVMTQEHAVTAILNLSIYENNKGL  430 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~l-L~s~d~~~~e~Av~aL~nLs~~~~~k~~  430 (636)
                      ..++.+...+.+.++.+|..|+..|..+..... .     ..-+++.|..+ +..+++.++..|+.+|.++.......  
T Consensus        54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--  125 (280)
T PRK09687         54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--  125 (280)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence            345666666777777778888877777753211 0     11235666665 45567778888888887775422111  


Q ss_pred             HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669          431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK  510 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~  510 (636)
                        ...+++.+...+.+.++.+|..++.+|..+.          ...+++.|+.+|.+.++.++..|+.+|.++....   
T Consensus       126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---  190 (280)
T PRK09687        126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---  190 (280)
T ss_pred             --chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence              1113445556666777788888888876542          2347788888888888888888888888873222   


Q ss_pred             HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669          511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                           ..+++.|+.+|.+.+..++..|+..|..+-.          ..+||.|+..|.++.  .+..|+.+|..+..   
T Consensus       191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~---  250 (280)
T PRK09687        191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD---  250 (280)
T ss_pred             -----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---
Confidence                 2467778888888888888888888876432          257888888888765  44567777766664   


Q ss_pred             HHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHH
Q 006669          591 ENLACISRLGAVIPLTELTK-SGTERAKRKATSLLEH  626 (636)
Q Consensus       591 ~~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~  626 (636)
                              .-+++.|..++. +.+++++++|.+.|..
T Consensus       251 --------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        251 --------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             --------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                    137889999986 7899999999998863

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.6e-08  Score=106.32  Aligned_cols=251  Identities=17%  Similarity=0.201  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC
Q 006669          368 ERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG  447 (636)
Q Consensus       368 ~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~  447 (636)
                      ..+.|+..|-+++. +...-..+.....|..||+.|...+.+.....+..|..||+..+||..+.+.|.++.|+++....
T Consensus       279 LLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~  357 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ  357 (791)
T ss_pred             HHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence            34567778888885 44445566677889999999998899999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhc
Q 006669          448 SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT  527 (636)
Q Consensus       448 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~  527 (636)
                      .++.+......|+|||++...+.+|++.|.+|.|+.++.+.+.  ...|+..|+.++.++..+.-+....+|+.+++.+.
T Consensus       358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~  435 (791)
T KOG1222|consen  358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL  435 (791)
T ss_pred             CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999986543  45688899999999999999988999999999986


Q ss_pred             CCCHHHHHHHHHHH-HHHhcChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHH
Q 006669          528 DSRNCMVDEALTIL-SVLASNPEAKIAIVKASTIPVLIVLL-RTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPL  605 (636)
Q Consensus       528 ~~~~~~~~~Al~~L-~~La~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L  605 (636)
                      .+...-++.++-+| -|||-+..+.+.+.+..++..|.+.- +...+    .-..++.++..+.+.....++.  .+.-|
T Consensus       436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--yvgdL  509 (791)
T KOG1222|consen  436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--YVGDL  509 (791)
T ss_pred             hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--HHHHH
Confidence            64433344444444 59999888888888877888877643 33332    2345667777776655555554  35555


Q ss_pred             HHhhhcCCHHH-HHHHHHHHHHh
Q 006669          606 TELTKSGTERA-KRKATSLLEHL  627 (636)
Q Consensus       606 ~~Ll~~g~~~~-k~kA~~lL~~l  627 (636)
                      ...+.+.++.. --....+|.++
T Consensus       510 a~i~~nd~~E~F~~EClGtlanL  532 (791)
T KOG1222|consen  510 AGIAKNDNSESFGLECLGTLANL  532 (791)
T ss_pred             HHHhhcCchHHHHHHHHHHHhhc
Confidence            55555543332 33333344333

>PRK09687 putative lyase; Provisional

Probab=99.05  E-value=1.7e-08  Score=104.28  Aligned_cols=225  Identities=13%  Similarity=0.063  Sum_probs=171.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .++.|+..|.+.+..++..|+..|..+..           ...++.+..++.++++.++..|+.+|..|...+..     
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence            47889999999999999999999887753           23467788889999999999999999998653321     


Q ss_pred             HhCChHHHHHH-HhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669          433 LAGAIPSIVQI-LRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG  511 (636)
Q Consensus       433 ~~G~I~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~  511 (636)
                      ...+++.|..+ +++.++.++..|+.+|.++.......    ...++..+...+.+.++.++..++.+|.++..      
T Consensus        88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------  157 (280)
T PRK09687         88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------  157 (280)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence            12356777776 56778999999999999985432111    11345667777888899999999999976532      


Q ss_pred             HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669          512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE  591 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~  591 (636)
                          ..+++.|+.+|.+.+..++..|+.+|..+...        ...+++.|+..|...++.++..|+..|..+-.  + 
T Consensus       158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~-  222 (280)
T PRK09687        158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K-  222 (280)
T ss_pred             ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h-
Confidence                33899999999999999999999999988332        12457789999998899999999999977542  2 


Q ss_pred             HHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          592 NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       592 ~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                              .+++.|...++++.  ++..|..+|..+.
T Consensus       223 --------~av~~Li~~L~~~~--~~~~a~~ALg~ig  249 (280)
T PRK09687        223 --------RVLSVLIKELKKGT--VGDLIIEAAGELG  249 (280)
T ss_pred             --------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence                    36777777777765  4456666666654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=1.2e-07  Score=99.75  Aligned_cols=277  Identities=16%  Similarity=0.189  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL  430 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~  430 (636)
                      +..+..||+.|...+.+........|..|+- -.+|+..+.+.|.|+.|++++...+++.+...+..|+|||.+..++..
T Consensus       303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K  381 (791)
T KOG1222|consen  303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK  381 (791)
T ss_pred             HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence            3467788999988888888888889999986 568999999999999999999999999999999999999999999999


Q ss_pred             HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc-----------------------
Q 006669          431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN-----------------------  487 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~-----------------------  487 (636)
                      ++..|.+|.++.+|.+.+.  ...|...|..+|.+++.|..+.....|+.+...+-.                       
T Consensus       382 Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN  459 (791)
T KOG1222|consen  382 MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN  459 (791)
T ss_pred             HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc
Confidence            9999999999999976542  233556666666666555544333333333221111                       


Q ss_pred             --------------------------------------------------------C-CHHHHHHHHHHHHhhhhccchH
Q 006669          488 --------------------------------------------------------G-STRGRKDAATALFNLCIYMGNK  510 (636)
Q Consensus       488 --------------------------------------------------------~-~~~~k~~A~~aL~nL~~~~~n~  510 (636)
                                                                              . +...-..+++.|.||...+-..
T Consensus       460 aQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw  539 (791)
T KOG1222|consen  460 AQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDW  539 (791)
T ss_pred             ceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH
Confidence                                                                    1 1122233455555555555444


Q ss_pred             HHHHH-hchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHh
Q 006669          511 GRAVR-AGIISALLKMLTD--SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLSL  585 (636)
Q Consensus       511 ~~lv~-~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L  585 (636)
                      ..+++ ...||.+-..|..  ...+++-..+-.+..++....+...+..++.|+.|+++|+..  .++..-.-..+...+
T Consensus       540 ~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~  619 (791)
T KOG1222|consen  540 AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQF  619 (791)
T ss_pred             HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            44444 4566666666654  344555666666777777777777777889999999999863  344444555666677


Q ss_pred             hccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      ..+.......+.+......|..|+++.+..+|+-.--+|..+..+
T Consensus       620 l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~  664 (791)
T KOG1222|consen  620 LKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH  664 (791)
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            776434444555666777899999999999998888888777543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.99  E-value=2.8e-08  Score=104.63  Aligned_cols=249  Identities=21%  Similarity=0.199  Sum_probs=169.9

Q ss_pred             HHHHHhccChhhHHHHHhc---CCHHHHHHhhcC--CChHHHHHHHHHHHHhhhC-cchHHHHHH------hCChHHHHH
Q 006669          375 EIRSLSKRSTDNRIIIADA---GAIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIML------AGAIPSIVQ  442 (636)
Q Consensus       375 ~L~~La~~~~~~r~~i~e~---g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~-~~~k~~I~~------~G~I~~Lv~  442 (636)
                      .++.+-+...+.|..+.+.   +....++++|+.  .+.++....+..+..|..+ +.....+..      .....+++.
T Consensus        33 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~  112 (312)
T PF03224_consen   33 LIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK  112 (312)
T ss_dssp             HHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH
Confidence            3333333333344444443   235566666653  5788889999999998774 444444443      236788899


Q ss_pred             HHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC----CHHHHHHHHHHHHhhhhccchHHHHHHhch
Q 006669          443 ILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG----STRGRKDAATALFNLCIYMGNKGRAVRAGI  518 (636)
Q Consensus       443 lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~  518 (636)
                      ++.+++..+...|+.+|..|.............+.++.+++.+++.    +......++.+|.+|...++.|..+.+.|+
T Consensus       113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~  192 (312)
T PF03224_consen  113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG  192 (312)
T ss_dssp             H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence            8888999999999999999977665444443356778888887753    344568899999999999999999999999


Q ss_pred             HHHHHHHh------cC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh
Q 006669          519 ISALLKML------TD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       519 v~~Lv~lL------~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~  590 (636)
                      ++.|++++      .+ .+..+..+++-++|.|+.+++....+...+.|+.|+++++.. .+++..-++++|.|++..++
T Consensus       193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~  272 (312)
T PF03224_consen  193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP  272 (312)
T ss_dssp             HHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred             HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence            99999999      22 456678899999999999999999999989999999999864 57888999999999998776


Q ss_pred             H-HHHHHHHcCChHHHHHhhhc--CCHHHHHHHHHH
Q 006669          591 E-NLACISRLGAVIPLTELTKS--GTERAKRKATSL  623 (636)
Q Consensus       591 ~-~~~~i~~~G~i~~L~~Ll~~--g~~~~k~kA~~l  623 (636)
                      . ....++..|+++.|-.|...  +++...+--..+
T Consensus       273 ~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L  308 (312)
T PF03224_consen  273 KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFL  308 (312)
T ss_dssp             TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            5 66677888888777777654  466666554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=4.2e-08  Score=109.23  Aligned_cols=257  Identities=16%  Similarity=0.169  Sum_probs=208.1

Q ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHH-hccChhhHHHHHhcCCHHHHHHhhcCC-ChHHHHHHHHHHHHhhh-Ccc
Q 006669          351 VVAIEALVRKLSSR-SVEERRAAVAEIRSL-SKRSTDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNLSI-YEN  426 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~L-a~~~~~~r~~i~e~g~i~~Lv~lL~s~-d~~~~e~Av~aL~nLs~-~~~  426 (636)
                      .+-+..|++.|... ++..|.+|+.+|..+ .-.+.+.-..+--.-.||.|+.+|+++ +.+++-+|+.+|.+|+. .|.
T Consensus       166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~  245 (1051)
T KOG0168|consen  166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR  245 (1051)
T ss_pred             hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence            34688899999866 888899999998864 444554444343446799999999874 58999999999999998 788


Q ss_pred             hHHHHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669          427 NKGLIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI  505 (636)
Q Consensus       427 ~k~~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~  505 (636)
                      ....+++.++||.|++-|.. ..+++.++++.+|..+|..+  -..|.++|++...+..|.--+..+++.|+....|.|.
T Consensus       246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88889999999999987654 57899999999999998654  4677888999999999987788899999999999986


Q ss_pred             c--cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCC----CHHHH
Q 006669          506 Y--MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTG----LPRNK  575 (636)
Q Consensus       506 ~--~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~----s~~~k  575 (636)
                      .  .+.-..+++  ++|.|..+|+..+...++.++-++..++.    .++--+.+...|.|....++|...    +..+.
T Consensus       324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence            4  233344443  79999999999888999999999988876    345567788889999999998743    34566


Q ss_pred             HHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc
Q 006669          576 ENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS  611 (636)
Q Consensus       576 e~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~  611 (636)
                      ...+..|..+|++.+-....+...+....|..++..
T Consensus       402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            677888888999888888888888888888888754

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.96  E-value=1.7e-07  Score=101.00  Aligned_cols=274  Identities=13%  Similarity=0.093  Sum_probs=202.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC-ChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~-d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      ...++..|...+..++..|+..|..+...+..+.......-....|...|++. +...+.-++.+|.+|...+..|..+.
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~  182 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV  182 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence            45566788888889999999999988754433211111111334566666654 46788889999999999999999999


Q ss_pred             HhCChHHHHHHHhcC--cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCC-HHHHHHHHHHHHhhhhcc--
Q 006669          433 LAGAIPSIVQILRAG--SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGS-TRGRKDAATALFNLCIYM--  507 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~-~~~k~~A~~aL~nL~~~~--  507 (636)
                      +.++++.|+.+|+..  +...+.+++-+++-||+.++....+...+.|+.|+++++... ..+.+-++.+|.||....  
T Consensus       183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~  262 (429)
T cd00256         183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD  262 (429)
T ss_pred             HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence            988999999999864  568899999999999999887777766799999999999764 577888999999997643  


Q ss_pred             -----chHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHH-------HHHhcCh------------------------h
Q 006669          508 -----GNKGRAVRAGIISALLKMLTD--SRNCMVDEALTIL-------SVLASNP------------------------E  549 (636)
Q Consensus       508 -----~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L-------~~La~~~------------------------~  549 (636)
                           .....+++.|+.+.+-.+-..  .++++.+..-.+-       ..+++..                        +
T Consensus       263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E  342 (429)
T cd00256         263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE  342 (429)
T ss_pred             cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence                 124566777776655554433  4666554332221       2222211                        2


Q ss_pred             hHHHHHhcC--cHHHHHHHHc-CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 006669          550 AKIAIVKAS--TIPVLIVLLR-TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEH  626 (636)
Q Consensus       550 ~~~~i~~~g--~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~  626 (636)
                      +...+-+.+  .+..|+++|. +.++.+-.-|+.=+..++.+.|..+..+.+.|+=..+++++.+.++.+|..|..++..
T Consensus       343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk  422 (429)
T cd00256         343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK  422 (429)
T ss_pred             HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            233444433  4788999995 4457777788888999999999888888899999999999999999999999998886


Q ss_pred             h
Q 006669          627 L  627 (636)
Q Consensus       627 l  627 (636)
                      |
T Consensus       423 l  423 (429)
T cd00256         423 L  423 (429)
T ss_pred             H
Confidence            5

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.93  E-value=4.8e-10  Score=80.75  Aligned_cols=39  Identities=36%  Similarity=0.824  Sum_probs=31.1

Q ss_pred             CccchhhccCCeecCCCchhhhHHHHHHHcCCC---CCCCCC
Q 006669          260 CPISLELMRDPVIVATGQTYERSYIQRWIDCGN---VTCPKT  298 (636)
Q Consensus       260 CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~---~~cP~~  298 (636)
                      |||++++|+|||++++||+|++.+|++|++..+   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998543   358875

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.90  E-value=1.1e-09  Score=104.04  Aligned_cols=61  Identities=30%  Similarity=0.573  Sum_probs=53.0

Q ss_pred             CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC---------------CCCCCCCCCcccccCCcccchh
Q 006669          252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC---------------GNVTCPKTQQKLEHLTLTPNYV  312 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~---------------~~~~cP~~~~~l~~~~l~pn~~  312 (636)
                      ....++|.||||++.++|||+++|||.||+.||.+|+..               +...||.|+..+....++|.+.
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            455678999999999999999999999999999999742               2357999999999988988763

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=5.4e-09  Score=101.43  Aligned_cols=184  Identities=22%  Similarity=0.244  Sum_probs=118.5

Q ss_pred             hhhchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhhh--cCCCcchhHHHh-hc------CCC
Q 006669          107 SDEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATER--YGSMNSRNFFHA-LS------QPL  177 (636)
Q Consensus       107 ~l~~~~~v~~~~~~~~~~~~~~L~~lp~~~~~~s~ev~e~~~~~~~q~~~~~~~--~~~~~~~~~~~~-~~------~~~  177 (636)
                      ++.++-.-+..|-+....+.++.|..--..+..-+++-++.       ++|+..  .-..++++..++ +.      ...
T Consensus        83 flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L-------~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~  155 (284)
T KOG4642|consen   83 FLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKAL-------RDAKKKRWEVSEEKRIRQELELHSYLESLIEG  155 (284)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHH-------HHHHhCccchhHHHHHHHHhhHHHHHHHHhcc
Confidence            55556666677788888888887776555555556554443       333322  123444445544 11      111


Q ss_pred             CcccChhHHHHHHHhcCc--ccchh--hcc-cchhhhhHHHHHHhcccccccCCCccccccccchhhhhhhhhccCCCCC
Q 006669          178 EKEVSITNHEVKAKANHV--PDTID--SEC-HDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVL  252 (636)
Q Consensus       178 ~~~~~~~~l~~~~~~~~~--~~~~~--~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (636)
                      +++-  +.=+....  |.  +.++.  +.+ .+-+..+..+-.+.++++                         ......
T Consensus       156 ~~~~--~~s~~~~N--~~sde~~k~~q~~~~~~~d~~~kel~elf~~v~-------------------------e~rk~r  206 (284)
T KOG4642|consen  156 DRER--ELSEWQEN--GESDEHLKTMQVPIEQDHDHTTKELSELFSKVD-------------------------EKRKKR  206 (284)
T ss_pred             chhh--HHHHHHHc--CCChHHHhhhcchhHHHHHHHHHHHHHHHHHHH-------------------------HHhccc
Confidence            1111  00011111  22  12221  112 122344555555555441                         112345


Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhccc
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNI  326 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~  326 (636)
                      .+|+.++|-||.++|+|||+.|+|.||+|.-|.++...-+...|+|+.++....++||++++..|..+...|..
T Consensus       207 Evpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w  280 (284)
T KOG4642|consen  207 EVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW  280 (284)
T ss_pred             cccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence            78999999999999999999999999999999999998788999999999999999999999999999988753

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.84  E-value=1.9e-07  Score=98.29  Aligned_cols=220  Identities=19%  Similarity=0.185  Sum_probs=163.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh------cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669          356 ALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD------AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       356 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e------~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      .|++.+ +.+.+.....+..+..+...++.....+.+      .....++++++.++|..++..|+.+|..|......+.
T Consensus        62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~  140 (312)
T PF03224_consen   62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS  140 (312)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred             HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence            444444 467788888888888888777766655554      1267889999999999999999999999987544443


Q ss_pred             HHHHhCChHHHHHHHhc----CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh-----cc--CCHHHHHHHHH
Q 006669          430 LIMLAGAIPSIVQILRA----GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL-----QN--GSTRGRKDAAT  498 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL-----~~--~~~~~k~~A~~  498 (636)
                      .-...+.++.++..|++    .+.+.+..++.+|.+|...+++|..+.+.++++.|+.++     ..  .+......++.
T Consensus       141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll  220 (312)
T PF03224_consen  141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL  220 (312)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence            33335667888888875    345677899999999999999999999999999999999     22  24678899999


Q ss_pred             HHHhhhhccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChh--hHHHHHhcCcHHHHHHHHcC--CCHH
Q 006669          499 ALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPE--AKIAIVKASTIPVLIVLLRT--GLPR  573 (636)
Q Consensus       499 aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~--~~~~i~~~g~i~~Lv~lL~~--~s~~  573 (636)
                      +++-|+.+++....+.+.+.|+.|+++++. ..+.++.-++++|.||...+.  ....|+..|+++.+-.+...  ++++
T Consensus       221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded  300 (312)
T PF03224_consen  221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED  300 (312)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred             HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence            999999999999999999999999999976 678899999999999999766  78888887766665555543  3455


Q ss_pred             HHH
Q 006669          574 NKE  576 (636)
Q Consensus       574 ~ke  576 (636)
                      ..+
T Consensus       301 l~e  303 (312)
T PF03224_consen  301 LTE  303 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.83  E-value=1.9e-07  Score=97.41  Aligned_cols=277  Identities=14%  Similarity=0.134  Sum_probs=205.9

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHH-------HHHHHHHHHhh
Q 006669          352 VAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQ-------EHAVTAILNLS  422 (636)
Q Consensus       352 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~-------e~Av~aL~nLs  422 (636)
                      .....+++.|.+. .++..+-....+...+ +++.-+-.+++.|.+..++.+++. .+-.-.       ..+.....-|.
T Consensus       223 sl~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll  301 (604)
T KOG4500|consen  223 SLVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL  301 (604)
T ss_pred             hHHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence            4466677777654 3344444555555555 577888899999999999999875 222112       22333333333


Q ss_pred             hCcchHHHHHHhC-ChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc-----CCHHHHHHH
Q 006669          423 IYENNKGLIMLAG-AIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN-----GSTRGRKDA  496 (636)
Q Consensus       423 ~~~~~k~~I~~~G-~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~-----~~~~~k~~A  496 (636)
                      ..++.-..+...+ .+..++.-+.+.+......++-++.|++..|.++.++++.+.+..|+++|..     |+.+.+..+
T Consensus       302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~  381 (604)
T KOG4500|consen  302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC  381 (604)
T ss_pred             cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence            3344433444433 7888888899999999999999999999999999999999999999998853     578899999


Q ss_pred             HHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHh-cCcHHHHHHHHcCCC-HH
Q 006669          497 ATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVK-ASTIPVLIVLLRTGL-PR  573 (636)
Q Consensus       497 ~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~-~g~i~~Lv~lL~~~s-~~  573 (636)
                      +.||+||..-..||..++.+|++..++.++....+.++-.-++.|..+-...+ ...++.+ ...+..|++.-++++ ..
T Consensus       382 lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aG  461 (604)
T KOG4500|consen  382 LSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAG  461 (604)
T ss_pred             HHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccch
Confidence            99999999999999999999999999999988888888888888877766444 3334443 245778888877655 33


Q ss_pred             HHHHHHHHHHHhhccC--hHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          574 NKENAAAILLSLCKRD--TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       574 ~ke~A~~~L~~L~~~~--~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +--..-+.|..+..++  .+....+.+.|+++.++.++...+-..+..|.-+|-.+..
T Consensus       462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES  519 (604)
T ss_pred             hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence            5556677777777763  3455667789999999999988888888888877766643

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.79  E-value=5.6e-09  Score=110.82  Aligned_cols=69  Identities=16%  Similarity=0.396  Sum_probs=62.5

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHh
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCT  322 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  322 (636)
                      .+...|.||||++++.+||+++|||+||+.||..|+.. ...||.|+..+....+.+|+.+.++|+.|..
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence            45678999999999999999999999999999999975 4589999999988889999999999998864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.79  E-value=8.9e-07  Score=106.01  Aligned_cols=168  Identities=20%  Similarity=0.175  Sum_probs=92.5

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      +...++.|++.|.+.++.+|..|+..|..+..           .++++.|+..|..+++.++..|+.+|..+....    
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence            44567889999999999999999988877642           245778888888888888888888887663211    


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-----------ch--hH----HHHhcCchHHHHhhhccCCHHH
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-----------EN--KI----IIGASGAIPALVDLLQNGSTRG  492 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-----------~~--~~----~i~~~g~i~~Lv~LL~~~~~~~  492 (636)
                           ...+.+...|.+.++.++..|+..|..+...+           +.  +.    .++..+..+.|..++.+.++.+
T Consensus       684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V  758 (897)
T PRK13800        684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV  758 (897)
T ss_pred             -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence                 01123444444445555555554444432100           00  00    0000011233344444444444


Q ss_pred             HHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 006669          493 RKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA  545 (636)
Q Consensus       493 k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La  545 (636)
                      +..++.+|..+....        ...++.|..++.++++.++..|+..|..+.
T Consensus       759 R~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g  803 (897)
T PRK13800        759 RIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELG  803 (897)
T ss_pred             HHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence            444444444442211        123556666666666666666666665553

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=6.6e-06  Score=91.62  Aligned_cols=274  Identities=21%  Similarity=0.222  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhhCcc-
Q 006669          351 VVAIEALVRKLSSRS-VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSIYEN-  426 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~~~-  426 (636)
                      ...|+.|+..+.+.. .+.|+.|++.|+.+++   .+|..++.. |+++|+..|..  .|+++...++..++++..+++ 
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            457999999997654 6789999999999997   467666644 57999999975  578999999999999987542 


Q ss_pred             ------hH----------HHHH-HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC--chhHHHHhc-CchHHHHhhhc
Q 006669          427 ------NK----------GLIM-LAGAIPSIVQILRAGSMEARENAAATLFSLSLLD--ENKIIIGAS-GAIPALVDLLQ  486 (636)
Q Consensus       427 ------~k----------~~I~-~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~-g~i~~Lv~LL~  486 (636)
                            .+          ..++ ..+.|..++..+...+-.+|..+...|.+|-...  +.+..+... -+|..|+.+|.
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                  12          1222 3688999999999999999999999999986553  455555554 89999999999


Q ss_pred             cCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCC----CHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcH
Q 006669          487 NGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDS----RNCMVDEALTILSVLAS-NPEAKIAIVKASTI  560 (636)
Q Consensus       487 ~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i  560 (636)
                      +....++-+++-.|..|....++.++++. .++...|..++...    ..-+++.|+..|.||-. +..++.-+.+.+.|
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            98888999999999999999999888888 88999999999652    23578999999999988 45677788888899


Q ss_pred             HHHHHHHcC---CCH--------H--HHHHHHHHHHHhhccC--h----HHHHHHHHcCChHHHHHhhhcCC--HHHHHH
Q 006669          561 PVLIVLLRT---GLP--------R--NKENAAAILLSLCKRD--T----ENLACISRLGAVIPLTELTKSGT--ERAKRK  619 (636)
Q Consensus       561 ~~Lv~lL~~---~s~--------~--~ke~A~~~L~~L~~~~--~----~~~~~i~~~G~i~~L~~Ll~~g~--~~~k~k  619 (636)
                      |.|.++|..   ++.        +  .-..|+.++..+..-+  +    .+...+.+.+++..|+.++.+..  ..++..
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte  336 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE  336 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence            999988863   221        1  1123445555554321  1    23346678899999998876542  233444


Q ss_pred             HHHHHHHhh
Q 006669          620 ATSLLEHLR  628 (636)
Q Consensus       620 A~~lL~~l~  628 (636)
                      +--.+..+.
T Consensus       337 siitvAevV  345 (970)
T KOG0946|consen  337 SIITVAEVV  345 (970)
T ss_pred             HHHHHHHHH
Confidence            444444443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=3.5e-06  Score=87.16  Aligned_cols=183  Identities=21%  Similarity=0.193  Sum_probs=152.6

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHH
Q 006669          363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIV  441 (636)
Q Consensus       363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv  441 (636)
                      +.+.+.+..|+..|..+. ++.+|-.-+...|+..+++..+.+.++.+++.|+.+|...+. ++..+..+++.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            457889999999999999 478899999999999999999999999999999999999988 788899999999999999


Q ss_pred             HHHhcC-cHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhccC--CHHHHHHHHHHHHhhhhccc-hHHHHHHh
Q 006669          442 QILRAG-SMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNG--STRGRKDAATALFNLCIYMG-NKGRAVRA  516 (636)
Q Consensus       442 ~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~~~--~~~~k~~A~~aL~nL~~~~~-n~~~lv~~  516 (636)
                      ..|.+. +..++..|..++.+|...... .......+++..|...|+++  +.+.+..++..+..|...+. .+..+-..
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            999865 577889999999999877653 45555667899999999984  67888999999999876553 44444456


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          517 GIISALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       517 g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                      |....++.+....+....+.++.++..+..
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            777777777777777888888777766655

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.68  E-value=4.3e-06  Score=100.16  Aligned_cols=229  Identities=21%  Similarity=0.128  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-----
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE-----  425 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~-----  425 (636)
                      ...++.|++.|++.+..++..|+..|..+....          ...+.|...|.++|+.++..|+.+|..+...+     
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~  720 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA  720 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence            456889999999999999999999887774311          11244555666666666666666665442100     


Q ss_pred             ------c--hHHH----HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHH
Q 006669          426 ------N--NKGL----IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGR  493 (636)
Q Consensus       426 ------~--~k~~----I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k  493 (636)
                            +  .+..    +..-+..+.|...+.+.++++|..++.+|..+....        ...++.|..++++.++.++
T Consensus       721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR  792 (897)
T PRK13800        721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVR  792 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHH
Confidence                  0  0000    001122344455555566666666666665553211        1347889999999999999


Q ss_pred             HHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHH
Q 006669          494 KDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPR  573 (636)
Q Consensus       494 ~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~  573 (636)
                      ..|+.+|.++....         .+++.++..|.+.++.++..|+.+|..+..          ...++.|+.+|.+.++.
T Consensus       793 ~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~  853 (897)
T PRK13800        793 AAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLD  853 (897)
T ss_pred             HHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHH
Confidence            99999998874321         133568888989999999999999986642          24569999999999999


Q ss_pred             HHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 006669          574 NKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEH  626 (636)
Q Consensus       574 ~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~  626 (636)
                      +|..|+.+|..+- .++.         ..+.|...+.+.++.+++.|..+|..
T Consensus       854 VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        854 VRKAAVLALTRWP-GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHHHHhccC-CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999999998762 1222         46777788889999999999998864

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.68  E-value=6.1e-09  Score=80.04  Aligned_cols=45  Identities=33%  Similarity=0.697  Sum_probs=31.9

Q ss_pred             CCcccCccchhhccCCee-cCCCchhhhHHHHHHHc-CCCCCCCCCC
Q 006669          255 PADFLCPISLELMRDPVI-VATGQTYERSYIQRWID-CGNVTCPKTQ  299 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~-~~~~~cP~~~  299 (636)
                      ..+|.||||++.|.|||. ..|||+|+|.+|.+|+. .+...||++|
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            346899999999999998 59999999999999994 3456799864

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.53  E-value=6.2e-07  Score=79.82  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=136.6

Q ss_pred             HhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Q 006669          473 GASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK  551 (636)
Q Consensus       473 ~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~  551 (636)
                      .+.+.+..||+-.++. +.+.|+....-|.|.+.++-|...+.+..++...+..|...+..+++.+++.|.|+|-.+.+.
T Consensus        13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence            3446778888877654 688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      ..|.+++++|.++..+.+....+...|+..|..||..+...+.++....++..+.....+.+.+.+.-|...|....
T Consensus        93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV  169 (173)
T ss_pred             HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            99999999999999998887888889999999999988888999988878888877777777777777777776543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=6.6e-06  Score=85.15  Aligned_cols=178  Identities=24%  Similarity=0.201  Sum_probs=154.4

Q ss_pred             CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHHHHhchHHHHHHH
Q 006669          447 GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKM  525 (636)
Q Consensus       447 ~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~lv~~g~v~~Lv~l  525 (636)
                      .+++-++.|..-|..+..+-+|...+...|++.+++.++.+++...+..|+++|...+.+++ .+..+++.|+.+.|+.+
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            36888999999999999888899999999999999999999999999999999999988775 57788899999999999


Q ss_pred             hcC-CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 006669          526 LTD-SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRT--GLPRNKENAAAILLSLCKRDTENLACISRLGA  601 (636)
Q Consensus       526 L~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~  601 (636)
                      +.. .+...+..|+.++..|-. ++.+...+...++...|...|.+  .+.+.|..|+..+..|..........+...|.
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            975 566777899999999988 56688899999999999999998  56889999999999999888877777778888


Q ss_pred             hHHHHHhhhcCCHHHHHHHHHHH
Q 006669          602 VIPLTELTKSGTERAKRKATSLL  624 (636)
Q Consensus       602 i~~L~~Ll~~g~~~~k~kA~~lL  624 (636)
                      ...+..+..+....+++.|...+
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~  277 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTAL  277 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHH
Confidence            88888888888887777766543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.50  E-value=6.1e-08  Score=68.82  Aligned_cols=38  Identities=34%  Similarity=0.887  Sum_probs=33.4

Q ss_pred             CccchhhccCC-eecCCCchhhhHHHHHHHcCCCCCCCCC
Q 006669          260 CPISLELMRDP-VIVATGQTYERSYIQRWIDCGNVTCPKT  298 (636)
Q Consensus       260 CPis~~~m~dP-v~~~~G~t~~r~~I~~w~~~~~~~cP~~  298 (636)
                      |||+++.++|| +++++||+|++.+|++|+.. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 68999999999999999987 6889975

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.48  E-value=1.1e-05  Score=91.14  Aligned_cols=217  Identities=22%  Similarity=0.212  Sum_probs=115.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I  431 (636)
                      .+..+.+.|.++++..+..|++.|.++.  +++-...     .++.+.+++.++++.++..|+.++..+.. +++.-   
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~---  149 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV---  149 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH---
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH---
Confidence            4566677777777777777777777776  2332222     25667777777777777777777777765 33221   


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHc-cCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK  510 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~L-s~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~  510 (636)
                      ... .++.+..+|.+.++.++.+|+.++..+ ...+.+..  .-...++.|..++...++-.+..++..|..++......
T Consensus       150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~--~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~  226 (526)
T PF01602_consen  150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKS--LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED  226 (526)
T ss_dssp             HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTT--HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred             HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhh--hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence            112 466777777777777777777777777 11111110  00122333333344455555656666665554433221


Q ss_pred             HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669          511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD  589 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~  589 (636)
                      ..-  ...++.+..++.+.+..+.-.|+.++..+...+.     .-..+++.|+.++.+.++..+-.++..|..++...
T Consensus       227 ~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  227 ADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred             hhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence            100  3344445555544444555555555555444433     11233445555555444555555555555555433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.45  E-value=1.7e-05  Score=89.49  Aligned_cols=252  Identities=19%  Similarity=0.211  Sum_probs=176.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .++.+.+.+.++++.+|..|+.++..+.+.+++.   +... .++.+..+|.+.++.++..|+.++..+...+.....+ 
T Consensus       115 l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~-  189 (526)
T PF01602_consen  115 LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSL-  189 (526)
T ss_dssp             HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTH-
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhh-
Confidence            4667888889999999999999999998876653   2222 5889999999899999999999999991111111111 


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR  512 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~  512 (636)
                      -...+..|..++...++-.+...+.+|..++........-  ...++.+..++++.++.+...++.++..+.....    
T Consensus       190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----  263 (526)
T PF01602_consen  190 IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----  263 (526)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----
T ss_pred             HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----
Confidence            1223445555556778889999999999887665432211  4567888888888888888889998887765443    


Q ss_pred             HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhccChH
Q 006669          513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDTE  591 (636)
Q Consensus       513 lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~  591 (636)
                       .-..+++.|+.++.+.+..++..++..|..++...  ...+ .  .....+..+. +.++.+|..++.+|..++.  +.
T Consensus       264 -~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~  335 (526)
T PF01602_consen  264 -LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ES  335 (526)
T ss_dssp             -HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH----HH
T ss_pred             -HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCCChhHHHHHHHHHhhccc--cc
Confidence             44568889999999888889999999999998854  2222 2  2233344455 6778899999999999984  34


Q ss_pred             HHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhh
Q 006669          592 NLACISRLGAVIPLTELTK-SGTERAKRKATSLLEHLR  628 (636)
Q Consensus       592 ~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~  628 (636)
                      +...+     ++.|...+. ..++..++.+...+..+.
T Consensus       336 n~~~I-----l~eL~~~l~~~~d~~~~~~~i~~I~~la  368 (526)
T PF01602_consen  336 NVKEI-----LDELLKYLSELSDPDFRRELIKAIGDLA  368 (526)
T ss_dssp             HHHHH-----HHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred             chhhH-----HHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence            44443     555666663 346667777777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.42  E-value=8.5e-08  Score=69.10  Aligned_cols=36  Identities=25%  Similarity=0.704  Sum_probs=23.2

Q ss_pred             CccchhhccC----CeecCCCchhhhHHHHHHHcCC---CCCCC
Q 006669          260 CPISLELMRD----PVIVATGQTYERSYIQRWIDCG---NVTCP  296 (636)
Q Consensus       260 CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~---~~~cP  296 (636)
                      ||||.+ |.+    |++++|||+|++.||++|...+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 989    9999999999999999999854   34576

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.36  E-value=0.00015  Score=78.60  Aligned_cols=235  Identities=18%  Similarity=0.102  Sum_probs=170.2

Q ss_pred             CCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcch-HHHHHH-----hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC
Q 006669          394 GAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENN-KGLIML-----AGAIPSIVQILRAGSMEARENAAATLFSLSLLD  466 (636)
Q Consensus       394 g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~-k~~I~~-----~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~  466 (636)
                      ..+..++++|+. .+.++....+..+..|...... ...+.+     .....+++.+|..++..+...|+.+|..+....
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            356778888865 4567778888888887764433 334444     346788888998888889999999999886543


Q ss_pred             chhHHHHh-cCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHH
Q 006669          467 ENKIIIGA-SGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMVDEALTILS  542 (636)
Q Consensus       467 ~~~~~i~~-~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~  542 (636)
                      .....-.. .-.+.-|...++++ +.+.+..++.+|..|...++.|..+.+.++++.|+++|+.  .+..+.-.++-++|
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            21111000 01333455556554 4677888889999999999999999999999999999975  25578889999999


Q ss_pred             HHhcChhhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhccC------hHHHHHHHHcCChHHHHHhhhc--CC
Q 006669          543 VLASNPEAKIAIVKASTIPVLIVLLRTGL-PRNKENAAAILLSLCKRD------TENLACISRLGAVIPLTELTKS--GT  613 (636)
Q Consensus       543 ~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~------~~~~~~i~~~G~i~~L~~Ll~~--g~  613 (636)
                      .|+.++++...+...+.|+.|+++++... +++-.-++++|.|+...+      ......++..|+++.+..|...  ++
T Consensus       213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~D  292 (429)
T cd00256         213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDD  292 (429)
T ss_pred             HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCc
Confidence            99999988777777899999999998654 677788999999998753      2344566777777766666654  46


Q ss_pred             HHHHHHHHHHHHHhh
Q 006669          614 ERAKRKATSLLEHLR  628 (636)
Q Consensus       614 ~~~k~kA~~lL~~l~  628 (636)
                      +...+--..+-..|.
T Consensus       293 edL~edl~~L~e~L~  307 (429)
T cd00256         293 EDLTDDLKFLTEELK  307 (429)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666665555555443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.00022  Score=72.30  Aligned_cols=269  Identities=19%  Similarity=0.193  Sum_probs=182.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      ...+++++.+.++.++..|+..+..++..  ..+..... .-.++.+..++...++  -+.|+++|.|++.++..++.++
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            56789999999999999999988888764  22222221 2457778888875555  6789999999999998888888


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc------CchHHHHhhhccC--CH-HHHHHHHHHHHhh
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS------GAIPALVDLLQNG--ST-RGRKDAATALFNL  503 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~------g~i~~Lv~LL~~~--~~-~~k~~A~~aL~nL  503 (636)
                      .. .+..++..+.+.........+..|.||+..+.....+...      .++..++.-..+.  +. .-...-+..+.||
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            77 8888888888776666777889999999988754433221      2333333333322  21 2234456677889


Q ss_pred             hhccchHHHHHHhchHHH--HHHHhcCCCHHHH-HHHHHHHHHHhcChhhHHHHHhcC--cHHHH---------------
Q 006669          504 CIYMGNKGRAVRAGIISA--LLKMLTDSRNCMV-DEALTILSVLASNPEAKIAIVKAS--TIPVL---------------  563 (636)
Q Consensus       504 ~~~~~n~~~lv~~g~v~~--Lv~lL~~~~~~~~-~~Al~~L~~La~~~~~~~~i~~~g--~i~~L---------------  563 (636)
                      +....+|..+.+...++.  ++. +.+.+..++ .-.+++|.|.|........+...+  .+|.+               
T Consensus       160 s~~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm  238 (353)
T KOG2973|consen  160 SQFEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM  238 (353)
T ss_pred             hhhhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence            988888888877553332  222 222222332 345788888887666555444321  22322               


Q ss_pred             ------HHHHc-----CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhc
Q 006669          564 ------IVLLR-----TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLRK  629 (636)
Q Consensus       564 ------v~lL~-----~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~  629 (636)
                            +++|.     ..++.++..-+.+|..||. ....+..+...|+.+.|.++-+. .++.++++.-.+..++.+
T Consensus       239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                  24443     1357788899999999997 55778888999999999988765 467777777777777765

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.29  E-value=0.00011  Score=77.37  Aligned_cols=272  Identities=13%  Similarity=0.091  Sum_probs=198.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH---HHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHH
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNR---IIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r---~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      -.+.+..|...+.-....+.+.|..++.-....-   ..-..   ...|-..+.+ .+......|+.+|-.+...++.|-
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~  192 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY  192 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence            4556777877888777777788877765332111   11111   2234445554 567778889999999999999999


Q ss_pred             HHHHhCChHHHHHHHhc--CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCC-HHHHHHHHHHHHhhhhc
Q 006669          430 LIMLAGAIPSIVQILRA--GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGS-TRGRKDAATALFNLCIY  506 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~-~~~k~~A~~aL~nL~~~  506 (636)
                      .+..+.++..++..+.+  .+...+....-+++-|++++.....+...+.|+.|.+++++.. ..+.+-.+.++.|++..
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999843  3688999999999999999988888866699999999999764 56777888899999866


Q ss_pred             cc-------hHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHH-------HHHhcCh----------------------
Q 006669          507 MG-------NKGRAVRAGIISALLKMLTD--SRNCMVDEALTIL-------SVLASNP----------------------  548 (636)
Q Consensus       507 ~~-------n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L-------~~La~~~----------------------  548 (636)
                      .+       ....++..++.+.+-.+-..  .++++++..-.+-       ..|++..                      
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            53       23556666655555444433  4555554332222       2233221                      


Q ss_pred             --hhHHHHHhc--CcHHHHHHHHcCCC-HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHH
Q 006669          549 --EAKIAIVKA--STIPVLIVLLRTGL-PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSL  623 (636)
Q Consensus       549 --~~~~~i~~~--g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~l  623 (636)
                        ++...+-+.  ..+..|+.+|...+ |..-.-|+.=+....++.|+....+.+.|+=+.+..|+...++++|-.|..+
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla  432 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA  432 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence              122333333  36889999998765 7777888888999999999999999999999999999999999999999988


Q ss_pred             HHHhh
Q 006669          624 LEHLR  628 (636)
Q Consensus       624 L~~l~  628 (636)
                      +..|-
T Consensus       433 vQ~lm  437 (442)
T KOG2759|consen  433 VQKLM  437 (442)
T ss_pred             HHHHH
Confidence            87653

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=3.5e-07  Score=88.49  Aligned_cols=57  Identities=26%  Similarity=0.561  Sum_probs=51.5

Q ss_pred             CcccCccchhhccCCeecCCCchhhhHHHHHHHc--CCCCCCCCCCcccccCCcccchh
Q 006669          256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWID--CGNVTCPKTQQKLEHLTLTPNYV  312 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~--~~~~~cP~~~~~l~~~~l~pn~~  312 (636)
                      ..|-|-||++.-+|||++.|||-||=-||.+|+.  .+...||+|+...+...++|.|.
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            4699999999999999999999999999999986  34566899999999999999874

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.23  E-value=6.4e-07  Score=64.27  Aligned_cols=39  Identities=38%  Similarity=1.033  Sum_probs=36.2

Q ss_pred             CccchhhccCCe-ecCCCchhhhHHHHHHHc-CCCCCCCCC
Q 006669          260 CPISLELMRDPV-IVATGQTYERSYIQRWID-CGNVTCPKT  298 (636)
Q Consensus       260 CPis~~~m~dPv-~~~~G~t~~r~~I~~w~~-~~~~~cP~~  298 (636)
                      |||+.+.+.+|+ ++++||+|++.+|.+|++ .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 999999999999999998 667789975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.22  E-value=7.8e-07  Score=89.63  Aligned_cols=67  Identities=18%  Similarity=0.361  Sum_probs=60.7

Q ss_pred             CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHH
Q 006669          254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWC  321 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~  321 (636)
                      +-+-++|-||.+.|+-|+++|||||||--||.+++. .+..||.|..+.....+..|+.+.++|+.+-
T Consensus        20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~   86 (442)
T KOG0287|consen   20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLN   86 (442)
T ss_pred             hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHH
Confidence            445689999999999999999999999999999997 4789999999999999999999988888763

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.19  E-value=1.3e-05  Score=71.57  Aligned_cols=149  Identities=16%  Similarity=0.150  Sum_probs=118.3

Q ss_pred             CChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHH
Q 006669          435 GAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA  513 (636)
Q Consensus       435 G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~l  513 (636)
                      +.+..||.-... .+.++++...+-|.|.+.++.|-..+.+.+++...|+-|...+...++.+...|+|+|..+.|...+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I   95 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI   95 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence            445666665554 4799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669          514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL  583 (636)
Q Consensus       514 v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  583 (636)
                      ++++++|..+..+++++..++..|+..|..|+.... .|..+.+..++..+.+.-.+.+.+.+.-|-..|-
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~  166 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD  166 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999988543 4566655444444433332334444444444443

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.18  E-value=1e-06  Score=66.15  Aligned_cols=47  Identities=30%  Similarity=0.557  Sum_probs=41.0

Q ss_pred             CcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          256 ADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      +++.|+|+++-+.++++.|+||. |+..|+.+|+. +...||+|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            36789999999999999999999 99999999998 6789999998764

...

>PF05536 Neurochondrin: Neurochondrin

Probab=98.17  E-value=0.00018  Score=81.15  Aligned_cols=234  Identities=21%  Similarity=0.204  Sum_probs=164.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh---HHHHHhcCCHHHHHHhhcCC-------ChHHHHHHHHHHHHh
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDN---RIIIADAGAIPVLVNLLTTD-------DVMTQEHAVTAILNL  421 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~---r~~i~e~g~i~~Lv~lL~s~-------d~~~~e~Av~aL~nL  421 (636)
                      ..++..+..|++.+.+.+..++--+.++.+.++.+   ++.+.++=+.+.|-++|+++       ....+.-|+++|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            46888999999999778888888899998866633   45678886788899999872       245678899999999


Q ss_pred             hhCcchHHHHHHhCChHHHHHHHhcCcH-HHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHH
Q 006669          422 SIYENNKGLIMLAGAIPSIVQILRAGSM-EARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL  500 (636)
Q Consensus       422 s~~~~~k~~I~~~G~I~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL  500 (636)
                      +..++....----+-||.|++++.+.+. ++...+..+|..++..++.+..+.+.|+++.|++.+.+ .+.....|+.+|
T Consensus        85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            9876654221123569999999988766 99999999999999999999999999999999999987 667789999999


Q ss_pred             HhhhhccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HHHHHhc----CcHHHHHHHHcC-
Q 006669          501 FNLCIYMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPEA--KIAIVKA----STIPVLIVLLRT-  569 (636)
Q Consensus       501 ~nL~~~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~~----g~i~~Lv~lL~~-  569 (636)
                      .+++...+....--.    ..+++.+-..+.......+-..+..|..+-...+.  .......    ....-+-.+|++ 
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr  243 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR  243 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence            998765442111100    23556666666555555566778888777664421  1111112    233344455655 


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 006669          570 GLPRNKENAAAILLSLC  586 (636)
Q Consensus       570 ~s~~~ke~A~~~L~~L~  586 (636)
                      .++..|..|..+..+|.
T Consensus       244 ~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  244 LTPSQRDPALNLAASLL  260 (543)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            34666666554444443

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.12  E-value=1.9e-06  Score=85.74  Aligned_cols=49  Identities=20%  Similarity=0.380  Sum_probs=41.6

Q ss_pred             CCCcccCccchhhccCC--------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          254 IPADFLCPISLELMRDP--------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dP--------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      ..++..||||++.+.+|        ++.+|||+||+.||.+|... +.+||.|+.++.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            35678999999988764        66789999999999999974 679999998765

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=8.8e-05  Score=83.51  Aligned_cols=212  Identities=18%  Similarity=0.185  Sum_probs=159.3

Q ss_pred             HHHHHHhhcCC-ChHHHHHHHHHHHHh-hh-CcchHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCC-CchhH
Q 006669          396 IPVLVNLLTTD-DVMTQEHAVTAILNL-SI-YENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLL-DENKI  470 (636)
Q Consensus       396 i~~Lv~lL~s~-d~~~~e~Av~aL~nL-s~-~~~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~-~~~~~  470 (636)
                      +..|+.=|... |+..|..|+.-|..+ ++ +++.-.-+.-.-.+|.|+.+|+.. +.++...|+++|.+|... ++...
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            34455555544 788888887777654 44 555444444556899999999876 799999999999999865 66777


Q ss_pred             HHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--
Q 006669          471 IIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN--  547 (636)
Q Consensus       471 ~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~--  547 (636)
                      ..++.++||.|++-|..= -.++-+.++.||-.++..++  ..+.++|++...+..|.--+..++..|+++.+|+|..  
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            778889999999887653 35788899999999987553  4567889999888887545677889999999999983  


Q ss_pred             hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc---cChHHHHHHHHcCChHHHHHhhhc
Q 006669          548 PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK---RDTENLACISRLGAVIPLTELTKS  611 (636)
Q Consensus       548 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~---~~~~~~~~i~~~G~i~~L~~Ll~~  611 (636)
                      ++.=.-+.  .++|.|..+|...+.+.-|.++-.+..++.   ++++..+.+...|.+.....|+..
T Consensus       327 sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv  391 (1051)
T KOG0168|consen  327 SDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV  391 (1051)
T ss_pred             CccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence            44333343  479999999998888888888777776653   466777777788887777776643

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=2.6e-06  Score=88.93  Aligned_cols=69  Identities=28%  Similarity=0.667  Sum_probs=58.5

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH  324 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n  324 (636)
                      ...+++.||||++.+++|++++|||+|||.||+.|+. +...||.|+. .. ..+.+|..+.+++......+
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcC
Confidence            3467899999999999999999999999999999998 6678999996 32 27778998888888776554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00052  Score=77.03  Aligned_cols=246  Identities=19%  Similarity=0.178  Sum_probs=189.5

Q ss_pred             HHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCh------hhH-----------HHHHhcCCHHHHHHhhcCCChHHHHH
Q 006669          353 AIEALVRKLSS--RSVEERRAAVAEIRSLSKRST------DNR-----------IIIADAGAIPVLVNLLTTDDVMTQEH  413 (636)
Q Consensus       353 ~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~------~~r-----------~~i~e~g~i~~Lv~lL~s~d~~~~e~  413 (636)
                      +++.|++-|..  .+++....++..+..+..+++      +.+           ..|...+.|..|+..+...|-.++..
T Consensus        62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~  141 (970)
T KOG0946|consen   62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY  141 (970)
T ss_pred             ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence            57788888864  478888888888888876552      222           23445688999999999999999999


Q ss_pred             HHHHHHHhhh--CcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhccCC
Q 006669          414 AVTAILNLSI--YENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQNGS  489 (636)
Q Consensus       414 Av~aL~nLs~--~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~~~  489 (636)
                      ++..|.+|-.  ..+.+..++. +-+|..++.+|.+....+|-.+.-.|..|+.+..+..+++.- +++..|..++.+..
T Consensus       142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG  221 (970)
T KOG0946|consen  142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG  221 (970)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999876  3455666665 789999999999888888888999999999888877777665 99999999997531


Q ss_pred             ----HHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcC---CCH--------H--HHHHHHHHHHHHhcC----
Q 006669          490 ----TRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTD---SRN--------C--MVDEALTILSVLASN----  547 (636)
Q Consensus       490 ----~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~---~~~--------~--~~~~Al~~L~~La~~----  547 (636)
                          .-+..+++..|-||..++ .|+..+.+.+.||.|.++|..   .+.        .  -+-.++.++..|...    
T Consensus       222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~  301 (970)
T KOG0946|consen  222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS  301 (970)
T ss_pred             CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence                246889999999998766 788889999999999988853   221        1  123456666666551    


Q ss_pred             ---hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhccChHHHHHHHH
Q 006669          548 ---PEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLSLCKRDTENLACISR  598 (636)
Q Consensus       548 ---~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~i~~  598 (636)
                         ..++.++.+.+++..|..++.+.  ...+...+.-++.++.+++..+...+..
T Consensus       302 ~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~  357 (970)
T KOG0946|consen  302 SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD  357 (970)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence               12455778889999999888664  4577888888899999988888777754

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.06  E-value=0.00044  Score=76.36  Aligned_cols=149  Identities=18%  Similarity=0.116  Sum_probs=112.5

Q ss_pred             cHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHH
Q 006669          448 SMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKM  525 (636)
Q Consensus       448 ~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~l  525 (636)
                      +...+..|+-++.+++.. +.-+.......++.+||.++.+++..++..++++|.||...- +-|..+++.|+|..+.++
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~  469 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM  469 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence            444554455555554422 112222344578999999999999999999999999998755 559999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcChhhHH--HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHH
Q 006669          526 LTDSRNCMVDEALTILSVLASNPEAKI--AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACI  596 (636)
Q Consensus       526 L~~~~~~~~~~Al~~L~~La~~~~~~~--~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i  596 (636)
                      +.+.+..++..++++|.++.-+.+...  +..+.-.-..++.+.....+.++|.+...|.|+..+..+...-+
T Consensus       470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfl  542 (678)
T KOG1293|consen  470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFL  542 (678)
T ss_pred             hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence            999999999999999999998655433  33333334566778888899999999999999998765544444

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.001  Score=77.85  Aligned_cols=270  Identities=20%  Similarity=0.220  Sum_probs=163.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhc----CCChHHHHHHHHHHHHhhhC-cch
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLT----TDDVMTQEHAVTAILNLSIY-ENN  427 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~----s~d~~~~e~Av~aL~nLs~~-~~~  427 (636)
                      .+.+.+.+..++..++..|++.+...+...+.++...-.. ..+|.++..+.    .+|...-..+..+|-.|... +..
T Consensus       161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence            3344555555555599999999988877654444333332 45666666664    35555556666666666552 221


Q ss_pred             -HHHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHHccCCCc-------------------------------------
Q 006669          428 -KGLIMLAGAIPSIVQILRAG--SMEARENAAATLFSLSLLDE-------------------------------------  467 (636)
Q Consensus       428 -k~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~-------------------------------------  467 (636)
                       +..+  ...|.....+.++.  +..+|..|..+|..++....                                     
T Consensus       241 l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d  318 (1075)
T KOG2171|consen  241 LRPHL--SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD  318 (1075)
T ss_pred             HHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence             1111  11233333444333  35556666655555543210                                     


Q ss_pred             ------hhH-------HHHhc-C---chHH----HHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH---hchHHHHH
Q 006669          468 ------NKI-------IIGAS-G---AIPA----LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR---AGIISALL  523 (636)
Q Consensus       468 ------~~~-------~i~~~-g---~i~~----Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~---~g~v~~Lv  523 (636)
                            +..       .+.-. |   .+|+    +-.++++.++.-++.|+.||.-++.   ++...+.   ..+++.++
T Consensus       319 ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E---Gc~~~m~~~l~~Il~~Vl  395 (1075)
T KOG2171|consen  319 EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAE---GCSDVMIGNLPKILPIVL  395 (1075)
T ss_pred             cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHH
Confidence                  000       00001 1   2333    3345556677788888888777653   3333322   34778888


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhccChHHHHHHHHcC
Q 006669          524 KMLTDSRNCMVDEALTILSVLASN--PEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAILLSLCKRDTENLACISRLG  600 (636)
Q Consensus       524 ~lL~~~~~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G  600 (636)
                      ..|.++++.++..|+.++..++.+  |+-. .-...-.++.|+..+.+ .+++++.+|+.+|.++....+...-.=.-.+
T Consensus       396 ~~l~DphprVr~AA~naigQ~stdl~p~iq-k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~  474 (1075)
T KOG2171|consen  396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQ-KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG  474 (1075)
T ss_pred             hhcCCCCHHHHHHHHHHHHhhhhhhcHHHH-HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            888999999999999999999984  3332 22334567788888876 5789999999999998875543322222234


Q ss_pred             ChH-HHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          601 AVI-PLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       601 ~i~-~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      .+. .|..+.+++++.+++.|..++.....
T Consensus       475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~  504 (1075)
T KOG2171|consen  475 LMEKKLLLLLQSSKPYVQEQAVTAIASVAD  504 (1075)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            566 66677888999999999998876643

>PF05536 Neurochondrin: Neurochondrin

Probab=98.02  E-value=0.00012  Score=82.56  Aligned_cols=188  Identities=21%  Similarity=0.192  Sum_probs=134.8

Q ss_pred             hHHHHHHHhcCcHHHHHHHHHHHHHccCCCc----hhHHHHhcCchHHHHhhhccC-------CHHHHHHHHHHHHhhhh
Q 006669          437 IPSIVQILRAGSMEARENAAATLFSLSLLDE----NKIIIGASGAIPALVDLLQNG-------STRGRKDAATALFNLCI  505 (636)
Q Consensus       437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~LL~~~-------~~~~k~~A~~aL~nL~~  505 (636)
                      +...+.+|+..+.+-+-.++..+.++...++    .+..+.++=+.+.|-.||+.+       ....+.-|+..|..+|.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            5566778888776677777777888766544    244577775578899999874       24566778888889988


Q ss_pred             ccch--HHHHHHhchHHHHHHHhcCCCH-HHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 006669          506 YMGN--KGRAVRAGIISALLKMLTDSRN-CMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL  582 (636)
Q Consensus       506 ~~~n--~~~lv~~g~v~~Lv~lL~~~~~-~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  582 (636)
                      .++.  ...++  +-||.|++.+...+. .+++.|+.+|..++++++|+..+.+.|+++.|++.+.+ .+...+.|..+|
T Consensus        87 ~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   87 DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            6544  24444  579999999988666 99999999999999999999999999999999999987 577899999999


Q ss_pred             HHhhccChHHHHHHH---HcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          583 LSLCKRDTENLACIS---RLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       583 ~~L~~~~~~~~~~i~---~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      .+++.........-.   -..+++.|...........+-.+..+|..+
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~  211 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF  211 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence            999875442111100   012344555555544444454444444433

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.96  E-value=7.6e-06  Score=59.23  Aligned_cols=43  Identities=40%  Similarity=0.891  Sum_probs=38.4

Q ss_pred             cCccchhhccCCeecC-CCchhhhHHHHHHHcCCCCCCCCCCcc
Q 006669          259 LCPISLELMRDPVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQK  301 (636)
Q Consensus       259 ~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~~~~cP~~~~~  301 (636)
                      .|||+++.+.+|+.++ +||+|++.++.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999998888877 999999999999998777889999864

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.96  E-value=0.00037  Score=73.83  Aligned_cols=263  Identities=16%  Similarity=0.168  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHhcCCCHHH--HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhC-cc
Q 006669          351 VVAIEALVRKLSSRSVEE--RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIY-EN  426 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~--~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~-~~  426 (636)
                      .+.+..|++++.+++.+.  +.+|.+.|..+..  .+|+..++..| ...++.+-+. +.++.+...+.+|.+|.++ ++
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            356778999999887665  7888888887753  57899998877 4555554443 4577888889999999995 45


Q ss_pred             hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC--chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669          427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD--ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC  504 (636)
Q Consensus       427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~  504 (636)
                      .+..+++.|++..++--.+..++....+++-+|.|.+...  +.+..|++..+-+-|.-+--+.+.-.+..|+.+..-|+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla  335 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA  335 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence            5778889999999988888888999999999999987654  46778888877777777766667778899999999998


Q ss_pred             hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669          505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS  584 (636)
Q Consensus       505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  584 (636)
                      .+.+.-..+-+.|.+..+-.++.+-+++.-..      .-.....++    -..-+..|+-+|.+.--+.+  ++.+.. 
T Consensus       336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS~R~EAq--~i~AF~-  402 (832)
T KOG3678|consen  336 TNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDSNRLEAQ--CIGAFY-  402 (832)
T ss_pred             hhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhcchhhhh--hhHHHH-
Confidence            87776555555664433333333222221100      000001111    01247778888874333333  233322 


Q ss_pred             hhcc----Ch-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          585 LCKR----DT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       585 L~~~----~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +|..    .. .....+-+-|++..|.++..+.+..+..-|..+|+.|.+
T Consensus       403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            3321    11 122334567999999999998888888999999999865

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=6.4e-06  Score=82.21  Aligned_cols=54  Identities=22%  Similarity=0.418  Sum_probs=47.3

Q ss_pred             CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcc
Q 006669          254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLT  308 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~  308 (636)
                      .+..+.|-+|++-++||--+||||.||=+||..|+.+ ...||.|++++++..++
T Consensus       236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI  289 (293)
T ss_pred             CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence            3466999999999999999999999999999999985 45599999998876654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.94  E-value=0.00079  Score=74.45  Aligned_cols=225  Identities=16%  Similarity=0.137  Sum_probs=152.4

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHH
Q 006669          363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIV  441 (636)
Q Consensus       363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv  441 (636)
                      ..+.+....|+-+++.+++.-..-|.-+....++.+||.+|..++..++..++.+|.||.. ....|..+.+.|+|..+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            3467778888888888887555555555666789999999988888999999999999998 677799999999999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHccCCCchhHHHH--hcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHh--
Q 006669          442 QILRAGSMEARENAAATLFSLSLLDENKIIIG--ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRA--  516 (636)
Q Consensus       442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~--  516 (636)
                      ..+.+.++..+.++.|+|.++.+..+...+..  ..=....++.+..+.++.+++.+...|+||..+. +.-..+++.  
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~  547 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFK  547 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhh
Confidence            99999999999999999999999877654432  2234467788888899999999999999997653 333444441  


Q ss_pred             chHHHHHHHh--cCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc--------CCCHHHHHHHHHHHHHhh
Q 006669          517 GIISALLKML--TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR--------TGLPRNKENAAAILLSLC  586 (636)
Q Consensus       517 g~v~~Lv~lL--~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~--------~~s~~~ke~A~~~L~~L~  586 (636)
                      ..+......+  ...++ +...-...+.++...-+....-.-.|..+.++-.-.        +......-++.+.+.++.
T Consensus       548 ~~ld~i~l~lk~a~~~p-i~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~  626 (678)
T KOG1293|consen  548 DVLDKIDLQLKIAIGSP-ILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLT  626 (678)
T ss_pred             HHHHHHHHHHhhccCCc-eehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcc
Confidence            1222211111  12222 333334444444443333322222344444432211        223455667888888876


Q ss_pred             cc
Q 006669          587 KR  588 (636)
Q Consensus       587 ~~  588 (636)
                      ..
T Consensus       627 ~~  628 (678)
T KOG1293|consen  627 TT  628 (678)
T ss_pred             CC
Confidence            53

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00089  Score=78.37  Aligned_cols=236  Identities=19%  Similarity=0.180  Sum_probs=152.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~~I  431 (636)
                      ..+.+-.+|.|.++..|..|+..|..++.+..+.-.... ...++.+++.|..+++.++..|+.++..++.+ ...-..-
T Consensus       349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence            466777888999999999999999999987655433322 24677788889999999999999999999983 2222222


Q ss_pred             HHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHh--cCchH-HHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          432 MLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGA--SGAIP-ALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--~g~i~-~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      ...-.++.|+..+.+. ++.++.+|+.++.|++...... .+..  .+.+. .|..++.++++.+++.++++|...+...
T Consensus       428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA  506 (1075)
T KOG2171|consen  428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA  506 (1075)
T ss_pred             HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            3345677888888765 7899999999999997654322 2221  14444 3333556788999999999999987644


Q ss_pred             chHHHHHHhchHHHHHHHhcCCC-HHHHHHHHHHHHHHhc--ChhhHHHHHh--cCcHHHHHHH---HcCCCHHHHHHHH
Q 006669          508 GNKGRAVRAGIISALLKMLTDSR-NCMVDEALTILSVLAS--NPEAKIAIVK--ASTIPVLIVL---LRTGLPRNKENAA  579 (636)
Q Consensus       508 ~n~~~lv~~g~v~~Lv~lL~~~~-~~~~~~Al~~L~~La~--~~~~~~~i~~--~g~i~~Lv~l---L~~~s~~~ke~A~  579 (636)
                      +.+-.-.=.-.+|.|.+.|...+ .+.++....++..++.  ..-|++.+..  ...+..+..+   ....+...++.-.
T Consensus       507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~  586 (1075)
T KOG2171|consen  507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMI  586 (1075)
T ss_pred             hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHH
Confidence            33222222457888888887643 4444443333333222  2334444432  1234444443   1223455667777


Q ss_pred             HHHHHhhccCh
Q 006669          580 AILLSLCKRDT  590 (636)
Q Consensus       580 ~~L~~L~~~~~  590 (636)
                      ....++|+--+
T Consensus       587 ~~warmc~ilg  597 (1075)
T KOG2171|consen  587 AFWARMCRILG  597 (1075)
T ss_pred             HHHHHHHHHhc
Confidence            77777776433

>PTZ00429 beta-adaptin; Provisional

Probab=97.93  E-value=0.0028  Score=73.81  Aligned_cols=212  Identities=17%  Similarity=0.134  Sum_probs=148.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRS-LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      .+..|-+.|.+.+...+..|++.+-. ++.+. +.-      .+.+.+++++.+.|.+.+.-..-.|.+++........+
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL  105 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL  105 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH
Confidence            46667788888888888888876554 44432 221      24567888899999998888888888887632222212


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG  511 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~  511 (636)
                          ++..+.+=+.+.++.+|-.|+++|.++-..+     +.+ -.++++...+.+.++-+++.|+.++.++-...+  .
T Consensus       106 ----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--e  173 (746)
T PTZ00429        106 ----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--Q  173 (746)
T ss_pred             ----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--c
Confidence                3566677777889999999999999875421     111 245667777888899999999999999865443  2


Q ss_pred             HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669          512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS  584 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  584 (636)
                      .+.+.|.++.|.++|.+.++.++..|+.+|..+.......-. ...+.+..|+..|..-++..+-....+|..
T Consensus       174 lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~  245 (746)
T PTZ00429        174 LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA  245 (746)
T ss_pred             cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence            344578899999999999999999999999999864322211 223446666776666667777665555543

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.89  E-value=7.8e-06  Score=80.86  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHH
Q 006669          255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWC  321 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~  321 (636)
                      -.-++|-||.+.++-|++++||||||.-||..++. ++..||+|+......-+..+..++..++.+.
T Consensus        23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~   88 (391)
T COG5432          23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHA   88 (391)
T ss_pred             hhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence            34579999999999999999999999999999997 4789999999988888888888888777764

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.89  E-value=4.9e-06  Score=64.23  Aligned_cols=58  Identities=22%  Similarity=0.382  Sum_probs=32.3

Q ss_pred             cccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHH
Q 006669          257 DFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLI  317 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI  317 (636)
                      -++|++|.++|++||. -.|.|.||+.||.+.+.   ..||+|..|-...++.-|..|.++|
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence            3689999999999995 79999999999987553   3499999998888998898887765

>TIGR02270 conserved hypothetical protein

Probab=97.88  E-value=0.0012  Score=71.92  Aligned_cols=219  Identities=19%  Similarity=0.031  Sum_probs=115.4

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          353 AIEALVRKLS-SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      +++.++..|. ..+.++...++..+.  ...++         .++..|+..|...++.++..++.+|..+          
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i----------  113 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWL----------  113 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence            4666666663 344544443333322  11111         1256666666666666666666666432          


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG  511 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~  511 (636)
                      ...++.+.|+..|++.++.++..++.++...           .....+.|..+|++.++.++..|+.+|..+-.      
T Consensus       114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------  176 (410)
T TIGR02270       114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR------  176 (410)
T ss_pred             CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence            2234455666666666666666555554441           11234566666666666666666666666532      


Q ss_pred             HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh----c------------------CcHHHHHHHHcC
Q 006669          512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK----A------------------STIPVLIVLLRT  569 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~----~------------------g~i~~Lv~lL~~  569 (636)
                          ...++.|...+.+.++.++..|+..|..+-. ++....+..    .                  .+++.|..+++.
T Consensus       177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d  251 (410)
T TIGR02270       177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA  251 (410)
T ss_pred             ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC
Confidence                2244555555666666666666666655432 222111111    1                  223344444433


Q ss_pred             CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       570 ~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      .  .++..++.+|..+.           ...+++.|...+.+  +..++.|.+.++.|-.
T Consensus       252 ~--~vr~~a~~AlG~lg-----------~p~av~~L~~~l~d--~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       252 A--ATRREALRAVGLVG-----------DVEAAPWCLEAMRE--PPWARLAGEAFSLITG  296 (410)
T ss_pred             h--hhHHHHHHHHHHcC-----------CcchHHHHHHHhcC--cHHHHHHHHHHHHhhC
Confidence            2  24444444444333           23467777776643  3488888888888754

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.87  E-value=0.0046  Score=66.51  Aligned_cols=271  Identities=22%  Similarity=0.228  Sum_probs=179.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      .+.+...+-+.+.+++..+.+.+|.+.. +.+.-..+.+.+.=-.++..|..+  +...+++|+..+..+.....+...+
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~  105 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI  105 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence            3444434444558889899999999886 455666677767555667777654  3456789999888876643333222


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG  511 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~  511 (636)
                       ..|.+..++.+..+.+...+..|..+|..++..+  -..+...|++..|++.+.+++.......+.++..+..++..|.
T Consensus       106 -~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~  182 (371)
T PF14664_consen  106 -PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK  182 (371)
T ss_pred             -CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence             4577889999998888889999999999998754  3456677999999999998877777888888888877777776


Q ss_pred             HHHHhc----hHHHHHHH----hcCCC--HHHHHHHHHHHHHHhcChhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHH
Q 006669          512 RAVRAG----IISALLKM----LTDSR--NCMVDEALTILSVLASNPEAKIAIVKA--STIPVLIVLLRTGLPRNKENAA  579 (636)
Q Consensus       512 ~lv~~g----~v~~Lv~l----L~~~~--~~~~~~Al~~L~~La~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~ke~A~  579 (636)
                      .+...-    .+.++.+.    ..+..  ..+...+..+...|-+++ |--.+...  .++..|+..|...++.+++...
T Consensus       183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il  261 (371)
T PF14664_consen  183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL  261 (371)
T ss_pred             hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-ceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence            554422    33334443    11112  233333333333443333 22222222  4677777777777777777776


Q ss_pred             HHHHHhhcc------------------C--------------------------h---H-H----HHHHHHcCChHHHHH
Q 006669          580 AILLSLCKR------------------D--------------------------T---E-N----LACISRLGAVIPLTE  607 (636)
Q Consensus       580 ~~L~~L~~~------------------~--------------------------~---~-~----~~~i~~~G~i~~L~~  607 (636)
                      .++..+-.-                  +                          .   + +    ...+++.|.++.|+.
T Consensus       262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~  341 (371)
T PF14664_consen  262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE  341 (371)
T ss_pred             HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence            666655310                  0                          0   0 0    112368899999999


Q ss_pred             hhhcC-CHHHHHHHHHHHHHhhc
Q 006669          608 LTKSG-TERAKRKATSLLEHLRK  629 (636)
Q Consensus       608 Ll~~g-~~~~k~kA~~lL~~l~~  629 (636)
                      ++.+. ++...+||+-+|..+-+
T Consensus       342 li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  342 LIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHH
Confidence            99987 88889999999986643

>PTZ00429 beta-adaptin; Provisional

Probab=97.86  E-value=0.0042  Score=72.29  Aligned_cols=185  Identities=14%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .+..+.+.+...++.+|..|+-++..+...+++   .+.+.|.++.|..+|...|+.++.+|+.+|..+....... .-.
T Consensus       141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l  216 (746)
T PTZ00429        141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IES  216 (746)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHH
Confidence            355667778889999999999999998776553   4456688999999999999999999999999997633222 112


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHH
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKG  511 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~  511 (636)
                      ..+.+..++..|..-++-.+.....+|......++  ..  ....+..+...|++.++.+...|+.++.++....+ ...
T Consensus       217 ~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~--~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~  292 (746)
T PTZ00429        217 SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK--ES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI  292 (746)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc--HH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence            23445666666665555556556666644322111  11  12456777778888888999999999998875421 111


Q ss_pred             HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                      ..+-....++|+.++ +.+++++-.++..+..+..
T Consensus       293 ~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        293 ERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLV  326 (746)
T ss_pred             HHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHH
Confidence            111112335566654 3455666666655554443

>smart00184 RING Ring finger

Probab=97.85  E-value=1.4e-05  Score=55.73  Aligned_cols=39  Identities=49%  Similarity=1.073  Sum_probs=35.6

Q ss_pred             CccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCC
Q 006669          260 CPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKT  298 (636)
Q Consensus       260 CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~  298 (636)
                      |||+++..++|+++++||.|+..++.+|+..+...||.+
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998666779975

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=1.6e-05  Score=91.67  Aligned_cols=72  Identities=31%  Similarity=0.476  Sum_probs=66.7

Q ss_pred             CCCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669          252 LIIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH  324 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n  324 (636)
                      .++|++|.-|++..+|+|||++| +|+|-||+.|+.++-. ..+.|.||++|....++||..+|.-|+.|....
T Consensus       865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999 9999999999999874 678999999999999999999999999997653

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=3.2e-05  Score=84.02  Aligned_cols=75  Identities=29%  Similarity=0.421  Sum_probs=66.6

Q ss_pred             CCCCCCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669          249 PDVLIIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH  324 (636)
Q Consensus       249 ~~~~~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n  324 (636)
                      .+..++|++|.-|++..+|+|||++| +|.|.||+.|..++-+ +.+.|..+.|+...+++||..||+-|-.+....
T Consensus       846 ED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k  921 (929)
T COG5113         846 EDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK  921 (929)
T ss_pred             hhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence            34678999999999999999999976 5789999999999864 689999999999999999999999998886543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.80  E-value=7.4e-06  Score=59.72  Aligned_cols=40  Identities=35%  Similarity=0.760  Sum_probs=33.7

Q ss_pred             cCccchhhcc---CCeecCCCchhhhHHHHHHHcCCCCCCCCCC
Q 006669          259 LCPISLELMR---DPVIVATGQTYERSYIQRWIDCGNVTCPKTQ  299 (636)
Q Consensus       259 ~CPis~~~m~---dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~  299 (636)
                      .||||++-|.   .++.+++||.|.+.||.+|+.. +.+||.|+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            4999999994   5677999999999999999986 46999985

...

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0006  Score=75.20  Aligned_cols=269  Identities=14%  Similarity=0.099  Sum_probs=179.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH-h---cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIA-D---AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN  427 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~-e---~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~  427 (636)
                      ..++.|.+.|.+.+...++-|..+|..++.++.+--..=. .   .-.+|.++.+.++.++.++.+|+.++-..-.. .+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-QT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-Cc
Confidence            4689999999999888899999999999875543221100 0   13689999999999999999999988665442 23


Q ss_pred             HHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669          428 KGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY  506 (636)
Q Consensus       428 k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~  506 (636)
                      +..+.. ...++.+..+-+..++++|.+.+..|..|......|..---.+.++-++..-++.+..+...|+.-...++..
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ  286 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence            333333 3466777777677799999999999999876544332222226777777777788888888888888888776


Q ss_pred             cchHHHHHH--hchHHHHHHHhcCCC------------------------------------------------------
Q 006669          507 MGNKGRAVR--AGIISALLKMLTDSR------------------------------------------------------  530 (636)
Q Consensus       507 ~~n~~~lv~--~g~v~~Lv~lL~~~~------------------------------------------------------  530 (636)
                      +-.+..+..  ...||.|++-+.-.+                                                      
T Consensus       287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~  366 (885)
T KOG2023|consen  287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF  366 (885)
T ss_pred             cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence            644444433  457888877542111                                                      


Q ss_pred             --HHHHHHHHHHHHHHhcChhhHHHHHhcCc----HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH--cCCh
Q 006669          531 --NCMVDEALTILSVLASNPEAKIAIVKAST----IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR--LGAV  602 (636)
Q Consensus       531 --~~~~~~Al~~L~~La~~~~~~~~i~~~g~----i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~--~G~i  602 (636)
                        ..++..++++|-.|+.       +.....    +|.|-+.|.+.....||.++-+|..++.+.-.   -++.  .-.+
T Consensus       367 ~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLi  436 (885)
T KOG2023|consen  367 SDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELI  436 (885)
T ss_pred             ccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHH
Confidence              0122222222222222       122233    44444555566678899999888888864322   2222  1358


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          603 IPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       603 ~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      +.|+.++.+..+-+|....|.|.....|.
T Consensus       437 p~l~~~L~DKkplVRsITCWTLsRys~wv  465 (885)
T KOG2023|consen  437 PFLLSLLDDKKPLVRSITCWTLSRYSKWV  465 (885)
T ss_pred             HHHHHHhccCccceeeeeeeeHhhhhhhH
Confidence            88899999999999999999998877664

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.76  E-value=4.2e-05  Score=54.76  Aligned_cols=40  Identities=45%  Similarity=0.569  Sum_probs=38.1

Q ss_pred             ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 006669          383 STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLS  422 (636)
Q Consensus       383 ~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs  422 (636)
                      +++++..+.+.|++|.|+.+|++.+.+++++|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PHA02926 zinc finger-like protein; Provisional

Probab=97.72  E-value=2.4e-05  Score=75.36  Aligned_cols=51  Identities=14%  Similarity=0.351  Sum_probs=42.0

Q ss_pred             CCCCcccCccchhhccC---------CeecCCCchhhhHHHHHHHcCC-----CCCCCCCCcccc
Q 006669          253 IIPADFLCPISLELMRD---------PVIVATGQTYERSYIQRWIDCG-----NVTCPKTQQKLE  303 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~d---------Pv~~~~G~t~~r~~I~~w~~~~-----~~~cP~~~~~l~  303 (636)
                      ...++..|+||++...+         +++.+|||+||..||.+|....     ..+||.|++.+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            45678899999998744         5788999999999999999742     346999999775

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.71  E-value=0.0031  Score=66.69  Aligned_cols=230  Identities=15%  Similarity=0.125  Sum_probs=164.3

Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          356 ALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       356 ~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .|-..+++ .+.+-..-|+++|..+.+ -++.|..+..+.++..++..+.+  .+..+|.+.+-+++-|+.++...+.+.
T Consensus       160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~  238 (442)
T KOG2759|consen  160 FLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLK  238 (442)
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHh
Confidence            34444444 455667778899999997 46799999999999999998843  457788999999999999888888887


Q ss_pred             HhCChHHHHHHHhcCc-HHHHHHHHHHHHHccCCCc-------hhHHHHhcCchHHHHhhhccC---CHHHHHHHH----
Q 006669          433 LAGAIPSIVQILRAGS-MEARENAAATLFSLSLLDE-------NKIIIGASGAIPALVDLLQNG---STRGRKDAA----  497 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~-------~~~~i~~~g~i~~Lv~LL~~~---~~~~k~~A~----  497 (636)
                      ..+.|+.|..++++.. ..+..-.++++.|+....+       ....|...++ +.-++.|..+   +++...+.-    
T Consensus       239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e  317 (442)
T KOG2759|consen  239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTE  317 (442)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            7899999999999875 6677888899999876552       2234444444 4445555543   222222111    


Q ss_pred             ---HHHHhhhhcc------------------------chHHHHHH--hchHHHHHHHhcC-CCHHHHHHHHHHHHHHhc-
Q 006669          498 ---TALFNLCIYM------------------------GNKGRAVR--AGIISALLKMLTD-SRNCMVDEALTILSVLAS-  546 (636)
Q Consensus       498 ---~aL~nL~~~~------------------------~n~~~lv~--~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-  546 (636)
                         .-...|++.+                        +|..++-+  ..++..|+++|.. .++.+...|+.=+..... 
T Consensus       318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~  397 (442)
T KOG2759|consen  318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRH  397 (442)
T ss_pred             HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh
Confidence               1112233221                        23444444  3488899999965 446666666666666655 


Q ss_pred             ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          547 NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       547 ~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      +|+|+..+.+.|+=..+.++|.+.+|++|=+|+.++-.|..
T Consensus       398 yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  398 YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999999988876654

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.0054  Score=65.08  Aligned_cols=238  Identities=16%  Similarity=0.144  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC------cch----HHHHHHhCChHH
Q 006669          370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY------ENN----KGLIMLAGAIPS  439 (636)
Q Consensus       370 ~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~------~~~----k~~I~~~G~I~~  439 (636)
                      ...+..+..+|. -|+---.+++.++|+.|+.+|.+++.++....+..|..|...      .+.    -..+++.+.++.
T Consensus       102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            345666777774 677777889999999999999999999999999999999752      122    234456788899


Q ss_pred             HHHHHhcC------cHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccC-C-HHHHHHHHHHHHhhhhcc-ch
Q 006669          440 IVQILRAG------SMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNG-S-TRGRKDAATALFNLCIYM-GN  509 (636)
Q Consensus       440 Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~-~-~~~k~~A~~aL~nL~~~~-~n  509 (636)
                      |+.-+..-      ......++.+++.|+... ++....+++.|.+.-|+..+... . ...+..|...|.-+..+. +|
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            88876532      234567888888898665 45777888888888888865543 2 355677777777766555 47


Q ss_pred             HHHHHHhchHHHHHHHhcC---------CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 006669          510 KGRAVRAGIISALLKMLTD---------SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA  580 (636)
Q Consensus       510 ~~~lv~~g~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~  580 (636)
                      +...-...+|..+++-+.-         ...++.++-..+|..+...++++..+....++....-+++. ....+..|..
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk  339 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALK  339 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence            7777777888888877631         24567788888888888999999999998888877777765 3456778899


Q ss_pred             HHHHhhccCh--HHHHHHHHcCChHHHHHhh
Q 006669          581 ILLSLCKRDT--ENLACISRLGAVIPLTELT  609 (636)
Q Consensus       581 ~L~~L~~~~~--~~~~~i~~~G~i~~L~~Ll  609 (636)
                      +|-....+.+  .+|..+++.++...+.-+.
T Consensus       340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence            9988887766  7888888887777666543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.67  E-value=6e-05  Score=78.90  Aligned_cols=52  Identities=27%  Similarity=0.461  Sum_probs=46.0

Q ss_pred             ccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          258 FLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       258 f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      +.|.|++++-++||+ .-+||.|+|+.|++++.+ +.+||+|+++++..+++|-
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I   53 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI   53 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence            579999999999998 458999999999999985 5789999999988887763

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.00078  Score=73.16  Aligned_cols=228  Identities=21%  Similarity=0.205  Sum_probs=158.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cChhhHHHHHh-cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSK---RSTDNRIIIAD-AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~---~~~~~r~~i~e-~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      ..+-|..+|+.++.+++..+=..+..+-.   .+|..    .+ ...++.++.-+.+.++.+|..|+..+.....-....
T Consensus       209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s----~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~  284 (675)
T KOG0212|consen  209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS----MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD  284 (675)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc----cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence            45567888888888888554443333221   22221    12 246788999999999999999999999887755544


Q ss_pred             HHHHHhCChHHHHHHHhcCcH-HHHHHHHHH---HHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669          429 GLIMLAGAIPSIVQILRAGSM-EARENAAAT---LFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC  504 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~-e~~~~Aa~~---L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~  504 (636)
                      -...-+|++..++..+.+... ..++.+..+   |..+......+..+--...+..|...+.+...+++..++..+..|-
T Consensus       285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~  364 (675)
T KOG0212|consen  285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLY  364 (675)
T ss_pred             hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            555557777777777765533 344433322   3333333333322322246778888888888999999999999998


Q ss_pred             hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669          505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS  584 (636)
Q Consensus       505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  584 (636)
                      ...+|+-..-...+.+.|+.-|++.++.++..++.+|+++|.++....-   -.++..|+++......-.+..+.-++..
T Consensus       365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRq  441 (675)
T KOG0212|consen  365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQ  441 (675)
T ss_pred             hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence            8888877777788999999999999999999999999999997765522   1234455555555555667778888888


Q ss_pred             hhc
Q 006669          585 LCK  587 (636)
Q Consensus       585 L~~  587 (636)
                      ||.
T Consensus       442 lC~  444 (675)
T KOG0212|consen  442 LCL  444 (675)
T ss_pred             HHH
Confidence            885

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=2.8e-05  Score=72.26  Aligned_cols=52  Identities=23%  Similarity=0.554  Sum_probs=43.8

Q ss_pred             cccCccchhhccC--CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669          257 DFLCPISLELMRD--PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP  309 (636)
Q Consensus       257 ~f~CPis~~~m~d--Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  309 (636)
                      -|.||||++-.+.  ||..-|||.||+.||..-++. ...||+|+..+.+..+.+
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR  184 (187)
T ss_pred             ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence            3999999999854  777899999999999999985 578999998887766543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.61  E-value=0.00077  Score=67.45  Aligned_cols=182  Identities=19%  Similarity=0.154  Sum_probs=115.9

Q ss_pred             hcCcHHHHHHHHHHHHHccCCC---chhHHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchH
Q 006669          445 RAGSMEARENAAATLFSLSLLD---ENKIIIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGII  519 (636)
Q Consensus       445 ~~~~~e~~~~Aa~~L~~Ls~~~---~~~~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v  519 (636)
                      .+.+++.+..|+..|..+...+   ++...+...  ..+..+...+.+....+.+.|+.++..|+..-+..-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            4468999999999988886544   233333322  45566777776666778889999999988655444332334589


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHH--
Q 006669          520 SALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACIS--  597 (636)
Q Consensus       520 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~--  597 (636)
                      |.|++.+.+...-+.+.|..+|..++.+...-..+    .++.+...+.+.++..|..++..|..+....+.....+.  
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~  172 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS  172 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence            99999999988999999999999998865411111    145556667788999999999999888776551111111  


Q ss_pred             --HcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          598 --RLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       598 --~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                        -...++.+...+.++++.+|+.|..++..+.+.
T Consensus       173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence              134678888999999999999999999998653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.55  E-value=0.00015  Score=51.87  Aligned_cols=40  Identities=33%  Similarity=0.321  Sum_probs=37.6

Q ss_pred             cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       507 ~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                      ++++..+++.|+||.|+++|.+.+..+++.|+++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            5688999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.52  E-value=0.0008  Score=67.33  Aligned_cols=184  Identities=19%  Similarity=0.137  Sum_probs=114.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHhccC--hhhHHHHHhc--CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCC
Q 006669          361 LSSRSVEERRAAVAEIRSLSKRS--TDNRIIIADA--GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGA  436 (636)
Q Consensus       361 L~s~~~~~~~~Al~~L~~La~~~--~~~r~~i~e~--g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~  436 (636)
                      -++.+++.+..|+..|+.+.+.+  ......+.+.  ..+..+...+.+....+...|+.++..|+..-...-.-.-...
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            36789999999999999998876  3333333321  4556677777766677889999999998873222211112346


Q ss_pred             hHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHHHH
Q 006669          437 IPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRAVR  515 (636)
Q Consensus       437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~lv~  515 (636)
                      ++.|++.+.++...+++.|..+|..+...-.....+    .++.+...+.+.++.++..++..|..+....+ +...+-.
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            788888888888889999999999886644311111    14556666778899999999999988765444 1111111


Q ss_pred             ----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Q 006669          516 ----AGIISALLKMLTDSRNCMVDEALTILSVLASNP  548 (636)
Q Consensus       516 ----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~  548 (636)
                          ..+++.+...+.|.++++++.|-.+++.+..+-
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~  208 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF  208 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence                447888999999999999999999999987643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.46  E-value=0.0001  Score=75.55  Aligned_cols=53  Identities=25%  Similarity=0.416  Sum_probs=42.0

Q ss_pred             CcccCccchhh-ccCCe---ec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcc
Q 006669          256 ADFLCPISLEL-MRDPV---IV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLT  308 (636)
Q Consensus       256 ~~f~CPis~~~-m~dPv---~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~  308 (636)
                      ++-.||+|+.- ...|-   ++ +|||+||++||..+|..+...||.|+.++....+.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr   59 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR   59 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence            45679999873 34553   23 79999999999999988888999999988776643

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.0029  Score=64.38  Aligned_cols=186  Identities=19%  Similarity=0.183  Sum_probs=133.3

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHh
Q 006669          438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRA  516 (636)
Q Consensus       438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~  516 (636)
                      ..++++|.+.++.++..|...+.+++.. ..+...... ..++.+.+++....+  ...|+++|.|++...+-+..+++.
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~   82 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD   82 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence            4678899999999999999999999876 333333333 678889999887655  778999999999988889998888


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--c----CcHHHHHHHHcCC--CH-HHHHHHHHHHHHhhc
Q 006669          517 GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--A----STIPVLIVLLRTG--LP-RNKENAAAILLSLCK  587 (636)
Q Consensus       517 g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~----g~i~~Lv~lL~~~--s~-~~ke~A~~~L~~L~~  587 (636)
                       .+..++.++.++...+.+..+.+|.||+..++...++..  .    .++..++...-..  +. .--++-+.++.+|.+
T Consensus        83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~  161 (353)
T KOG2973|consen   83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ  161 (353)
T ss_pred             -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence             888999999888788999999999999998876655432  2    4555555544332  22 223567888888887


Q ss_pred             cChHHHHHHHHcC--ChHHHHHhhhcCCHHH-HHHHHHHHHHhhc
Q 006669          588 RDTENLACISRLG--AVIPLTELTKSGTERA-KRKATSLLEHLRK  629 (636)
Q Consensus       588 ~~~~~~~~i~~~G--~i~~L~~Ll~~g~~~~-k~kA~~lL~~l~~  629 (636)
                      .. ..+..+....  ....|..+-+ .+..+ |...+.+|++++-
T Consensus       162 ~~-~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cF  204 (353)
T KOG2973|consen  162 FE-AGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCF  204 (353)
T ss_pred             hh-hhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhc
Confidence            43 4444443322  3445666655 45555 4566778888654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.45  E-value=0.013  Score=64.83  Aligned_cols=232  Identities=20%  Similarity=0.235  Sum_probs=153.0

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC-----ChHHHHHHHHHHHHhhh-CcchHHHHHH-hC
Q 006669          363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-----DVMTQEHAVTAILNLSI-YENNKGLIML-AG  435 (636)
Q Consensus       363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~-----d~~~~e~Av~aL~nLs~-~~~~k~~I~~-~G  435 (636)
                      ..+..+..+|+++|.|....++..|..+.+.|..+.++..|+..     +.++..-...+|+-++. ....+..+.+ .+
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~  122 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH  122 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence            45788899999999999999999999999999999999999865     67777788888877765 4555555554 68


Q ss_pred             ChHHHHHHHhc-----------------CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC---------C
Q 006669          436 AIPSIVQILRA-----------------GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG---------S  489 (636)
Q Consensus       436 ~I~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~---------~  489 (636)
                      ++..++..|..                 ...++...++.++||+.........--....++.|+.++..-         .
T Consensus       123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l  202 (446)
T PF10165_consen  123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL  202 (446)
T ss_pred             hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence            88888877631                 134556788899999966543222111124455555544311         2


Q ss_pred             HHHHHHHHHHHHhhhhcc-ch-------HH----HHHHhchHHHHHHHhcC-----CC---HHHHHHHHHHHHHHhcC-h
Q 006669          490 TRGRKDAATALFNLCIYM-GN-------KG----RAVRAGIISALLKMLTD-----SR---NCMVDEALTILSVLASN-P  548 (636)
Q Consensus       490 ~~~k~~A~~aL~nL~~~~-~n-------~~----~lv~~g~v~~Lv~lL~~-----~~---~~~~~~Al~~L~~La~~-~  548 (636)
                      ......++.+|.|+-... ..       ..    .......+..|+++|..     ..   .+...-.+.+|..++.. .
T Consensus       203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~  282 (446)
T PF10165_consen  203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR  282 (446)
T ss_pred             hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence            456777888888872111 00       00    01123367777777632     11   13344456777777775 3


Q ss_pred             hhHHHHHh----------------cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHH
Q 006669          549 EAKIAIVK----------------ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLA  594 (636)
Q Consensus       549 ~~~~~i~~----------------~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~  594 (636)
                      ..|..+..                ...-..|++++.+..+..|..++..|+.||..+.....
T Consensus       283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v  344 (446)
T PF10165_consen  283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFV  344 (446)
T ss_pred             HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence            34433321                12457899999887799999999999999986654333

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.44  E-value=0.018  Score=61.19  Aligned_cols=185  Identities=25%  Similarity=0.298  Sum_probs=132.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      ..+..+++.+.+.+...+..|+..+..+..           .-+++.+..+|.+.++.++..|+.+|.++-         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG---------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence            468889999999888888888877554432           235789999999999999999998776553         


Q ss_pred             HHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHH------------HHHHHH
Q 006669          432 MLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRG------------RKDAAT  498 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~------------k~~A~~  498 (636)
                       ...+++.++..|. +.+..++..++.+|+.+-.          ..++.+++..+.+.....            +..++.
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence             2446889999998 4789999999999998743          235788888888765322            222222


Q ss_pred             HHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHH
Q 006669          499 ALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENA  578 (636)
Q Consensus       499 aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A  578 (636)
                      +|..+          -+...++.+.+++.+....++..|..+|..+....        ..+.+.+...+...+...+..+
T Consensus       172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~  233 (335)
T COG1413         172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA  233 (335)
T ss_pred             HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence            22222          12347888999998888899999999998888764        2344566666666666666665


Q ss_pred             HHHHHHh
Q 006669          579 AAILLSL  585 (636)
Q Consensus       579 ~~~L~~L  585 (636)
                      +..|..+
T Consensus       234 ~~~l~~~  240 (335)
T COG1413         234 LLALGEI  240 (335)
T ss_pred             HHHhccc
Confidence            5555444

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.38  E-value=0.014  Score=62.80  Aligned_cols=247  Identities=16%  Similarity=0.122  Sum_probs=168.7

Q ss_pred             HHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC--cHHHHHHH
Q 006669          378 SLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG--SMEARENA  455 (636)
Q Consensus       378 ~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~--~~e~~~~A  455 (636)
                      .+-+.++.-|..+.-....+.+..++-+++.+++..+..+++.+..++..-..+.+.+.--.++.-|...  +..-|++|
T Consensus         9 ~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QA   88 (371)
T PF14664_consen    9 DLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQA   88 (371)
T ss_pred             HHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHH
Confidence            3334445444444433344555545555568899999999999988888888888877666666666544  46678899


Q ss_pred             HHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHH
Q 006669          456 AATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVD  535 (636)
Q Consensus       456 a~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~  535 (636)
                      ...+..+...+++...+ -.|.+..++.+..+.+.+.+..++.+|..|+..+  -..++++|++..|++.+.++...+.+
T Consensus        89 LkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~  165 (371)
T PF14664_consen   89 LKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISE  165 (371)
T ss_pred             HHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHH
Confidence            99998876554333222 3378899999998888899999999999998754  34566799999999999887666888


Q ss_pred             HHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-------CH--HHHHHHHHHHHHhhccChHHHHHHHH-cCChHHH
Q 006669          536 EALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-------LP--RNKENAAAILLSLCKRDTENLACISR-LGAVIPL  605 (636)
Q Consensus       536 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-------s~--~~ke~A~~~L~~L~~~~~~~~~~i~~-~G~i~~L  605 (636)
                      ..+.++..+-.+|..|.-+...--+..++.-....       +.  .--..+..++..+-++.+.-...-.. ..++..|
T Consensus       166 ~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL  245 (371)
T PF14664_consen  166 SLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL  245 (371)
T ss_pred             HHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence            99999999999999998765433344444433221       11  12234455555555444433222222 2568888


Q ss_pred             HHhhhcCCHHHHHHHHHHHHHh
Q 006669          606 TELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       606 ~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      +..+...++.+++....++-.+
T Consensus       246 v~~L~~p~~~ir~~Ildll~dl  267 (371)
T PF14664_consen  246 VDSLRLPNPEIRKAILDLLFDL  267 (371)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHH
Confidence            8888888888888877766554

>TIGR02270 conserved hypothetical protein

Probab=97.38  E-value=0.012  Score=64.13  Aligned_cols=152  Identities=27%  Similarity=0.194  Sum_probs=113.7

Q ss_pred             CCHHHHHHhhc-CCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669          394 GAIPVLVNLLT-TDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII  472 (636)
Q Consensus       394 g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i  472 (636)
                      .+++.|+..|. .++..+...++.++..  ..+        ..++..++..|.+.++.++..++..|..+          
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----------  113 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL----------  113 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence            35788999895 4556666555544422  111        11378899999888888999999998754          


Q ss_pred             HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Q 006669          473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI  552 (636)
Q Consensus       473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~  552 (636)
                      ...+..+.|+.+|.+.++.++..++.++...           .....+.+..+|.+.+..+...|+.+|..+..      
T Consensus       114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------  176 (410)
T TIGR02270       114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR------  176 (410)
T ss_pred             CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence            3346788999999999999998888777661           12345688889999999999999999987654      


Q ss_pred             HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          553 AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       553 ~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                          ...++.|...+.+.++.++..|+..|..+.
T Consensus       177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence                356677878888888999999988886664

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.36  E-value=0.014  Score=64.60  Aligned_cols=258  Identities=14%  Similarity=0.118  Sum_probs=167.1

Q ss_pred             HHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----------cCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHH
Q 006669          372 AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL----------TTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSI  440 (636)
Q Consensus       372 Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL----------~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~L  440 (636)
                      |+..||.+++ ++.+-..+....++..|.++-          ...+..+..+|+.+|.|+.. ++..+..+.+.|..+.+
T Consensus         1 ~L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            3556777776 445555555555566666544          23567899999999999887 67778888899999999


Q ss_pred             HHHHhcC-----cHHHHHHHHHHHHHccCC-CchhHHHHhc-CchHHHHhhhccC-----------------CHHHHHHH
Q 006669          441 VQILRAG-----SMEARENAAATLFSLSLL-DENKIIIGAS-GAIPALVDLLQNG-----------------STRGRKDA  496 (636)
Q Consensus       441 v~lL~~~-----~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~LL~~~-----------------~~~~k~~A  496 (636)
                      ++.|+..     +.+..-...++||-++.. .+.+..+.+. +++..++..|...                 .......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999887     788889999999988764 4566666665 7777777655421                 22345678


Q ss_pred             HHHHHhhhhccchHHHHHHhchHHHHHHHhc----C-----CCHHHHHHHHHHHHHHhcC-hhh-------HHHH----H
Q 006669          497 ATALFNLCIYMGNKGRAVRAGIISALLKMLT----D-----SRNCMVDEALTILSVLASN-PEA-------KIAI----V  555 (636)
Q Consensus       497 ~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~----~-----~~~~~~~~Al~~L~~La~~-~~~-------~~~i----~  555 (636)
                      +..+||+..+.+....--..+.++.|+.++.    .     +-......++.+|.|+--. .+.       ...+    .
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            8999999766544332122334444444332    1     2344566777777776210 011       0011    1


Q ss_pred             hcCcHHHHHHHHcC----CC-H---HHHHHHHHHHHHhhccChHHHHHHHH----------------cCChHHHHHhhhc
Q 006669          556 KASTIPVLIVLLRT----GL-P---RNKENAAAILLSLCKRDTENLACISR----------------LGAVIPLTELTKS  611 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~----~s-~---~~ke~A~~~L~~L~~~~~~~~~~i~~----------------~G~i~~L~~Ll~~  611 (636)
                      ....+..|+.+|..    .. .   ..-.--+.+|..++..+...+..+..                ...-..|+.++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            12357778877753    11 1   22234466667777766555544432                2456789999998


Q ss_pred             CCHHHHHHHHHHHHHhhcc
Q 006669          612 GTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       612 g~~~~k~kA~~lL~~l~~~  630 (636)
                      ..+.+|.-++.+|-.|++.
T Consensus       320 ~~~~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  320 PDPQLKDAVAELLFVLCKE  338 (446)
T ss_pred             CCchHHHHHHHHHHHHHhh
Confidence            8899999999999999864

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.35  E-value=0.0042  Score=66.12  Aligned_cols=179  Identities=18%  Similarity=0.177  Sum_probs=140.9

Q ss_pred             HHHHHhcCCHHHHHHhhcCCChHH--HHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHcc
Q 006669          387 RIIIADAGAIPVLVNLLTTDDVMT--QEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLS  463 (636)
Q Consensus       387 r~~i~e~g~i~~Lv~lL~s~d~~~--~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls  463 (636)
                      ...|...|++..|++++.+++.+.  +.+|...|..+. ..+|+..++.-| +..++.+-+.. .++.....+.+|.++-
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            345666799999999999887554  677777776654 457788888766 56666555543 6788888999999986


Q ss_pred             CCCc-hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc--chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 006669          464 LLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM--GNKGRAVRAGIISALLKMLTDSRNCMVDEALTI  540 (636)
Q Consensus       464 ~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~--~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~  540 (636)
                      ...+ ....++..|++..++--.+..++.....++.+|.|...+.  ..+.++++..+-..|.-+-.+.++-++-.|+-+
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA  330 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA  330 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence            6544 5677888899999988888888999999999999987654  568899999999999999888888888899999


Q ss_pred             HHHHhcChhhHHHHHhcCcH---HHHHHHH
Q 006669          541 LSVLASNPEAKIAIVKASTI---PVLIVLL  567 (636)
Q Consensus       541 L~~La~~~~~~~~i~~~g~i---~~Lv~lL  567 (636)
                      .+.|+.+.+....+-..|.+   .+++..+
T Consensus       331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~  360 (832)
T KOG3678|consen  331 VAVLATNKEVEREVRKSGTLALVEPLVASL  360 (832)
T ss_pred             HhhhhhhhhhhHHHhhccchhhhhhhhhcc
Confidence            99999998887777777754   4444443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.0025  Score=68.90  Aligned_cols=259  Identities=17%  Similarity=0.166  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCc
Q 006669          370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGS  448 (636)
Q Consensus       370 ~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~  448 (636)
                      ..++..|..+++.-..-|.-+.++..++.|+.+|+.++..+.--+...+.|+.- ....+..+.+.|.|..|+..+.+.+
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            345667778888777778888899999999999998777677777788888876 5566888999999999999998888


Q ss_pred             HHHHHHHHHHHHHccCCCchh--HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-ch---HHHHHH---hc-h
Q 006669          449 MEARENAAATLFSLSLLDENK--IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GN---KGRAVR---AG-I  518 (636)
Q Consensus       449 ~e~~~~Aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n---~~~lv~---~g-~  518 (636)
                      ...+.+..|+|..+-....+-  -+....-++..++++..+....++..++..|.|+..+. .|   +.-+++   .. .
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            889999999999998876543  34455567789999999888899999999999986532 22   222222   11 4


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH-h-cCcHHHHHHHHc----C-----CC-------H------HH
Q 006669          519 ISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV-K-ASTIPVLIVLLR----T-----GL-------P------RN  574 (636)
Q Consensus       519 v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~-~-~g~i~~Lv~lL~----~-----~s-------~------~~  574 (636)
                      ...|++.+...++-..+..+.+|.+++.+.+....++ + ...+..+.++|.    .     ++       |      ..
T Consensus       567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l  646 (743)
T COG5369         567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL  646 (743)
T ss_pred             HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence            4556777766777777788888888887666544332 2 233333333321    1     00       0      00


Q ss_pred             HH----------------------------H---HHHHHHHhhcc---------ChHHHHHHHHcCChHHHHHhhhcCCH
Q 006669          575 KE----------------------------N---AAAILLSLCKR---------DTENLACISRLGAVIPLTELTKSGTE  614 (636)
Q Consensus       575 ke----------------------------~---A~~~L~~L~~~---------~~~~~~~i~~~G~i~~L~~Ll~~g~~  614 (636)
                      .|                            -   -.|+..++...         ..+.+..+...|.-+.|+.+....++
T Consensus       647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl  726 (743)
T COG5369         647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL  726 (743)
T ss_pred             cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence            11                            1   12222222110         11444555667777788888778889


Q ss_pred             HHHHHHHHHHHHhh
Q 006669          615 RAKRKATSLLEHLR  628 (636)
Q Consensus       615 ~~k~kA~~lL~~l~  628 (636)
                      .+++|+..+|.+|+
T Consensus       727 ~vrek~~taL~~l~  740 (743)
T COG5369         727 IVREKIGTALENLR  740 (743)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999999885

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.076  Score=56.69  Aligned_cols=238  Identities=18%  Similarity=0.214  Sum_probs=166.7

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-----hhh----HHHHHhcCCHHHHHHhhcCCC------hHHHHHH
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-----TDN----RIIIADAGAIPVLVNLLTTDD------VMTQEHA  414 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-----~~~----r~~i~e~g~i~~Lv~lL~s~d------~~~~e~A  414 (636)
                      +..+++.|+++|...+.++....+.-++.|...+     .+.    -..+++.+.++.|+.-+..-|      .....++
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            3456899999999999999999999999887543     222    234556688999998886533      3345677


Q ss_pred             HHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhc----
Q 006669          415 VTAILNLSI-YENNKGLIMLAGAIPSIVQILRAG--SMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQ----  486 (636)
Q Consensus       415 v~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~----  486 (636)
                      .+.+-|+.. .++....+++.|.+.-|+.-++..  -..-+.+|..+|.-+-.+. +++...+..+++..++.-+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            888889887 667788888898887777655433  2345677888888776554 48888888889998887664    


Q ss_pred             cC-----CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh---hHHHHHhcC
Q 006669          487 NG-----STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE---AKIAIVKAS  558 (636)
Q Consensus       487 ~~-----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~---~~~~i~~~g  558 (636)
                      .+     ..+...+-..+|+.+...+.|+.+++...++....-+++. ....+-.|+.+|-....+++   +...+++.+
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            12     1234455556666666778999999998777765555543 44455678999988887766   455677777


Q ss_pred             cHHHHHH-HHcCC--------C-HHHHHHHHHHHHHhhcc
Q 006669          559 TIPVLIV-LLRTG--------L-PRNKENAAAILLSLCKR  588 (636)
Q Consensus       559 ~i~~Lv~-lL~~~--------s-~~~ke~A~~~L~~L~~~  588 (636)
                      ++..+.. .++.+        + ...-++.+++|+++-.+
T Consensus       362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            7777664 33332        2 34457888888877653

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.00015  Score=71.62  Aligned_cols=54  Identities=26%  Similarity=0.401  Sum_probs=46.5

Q ss_pred             CCCC-CcccCccchhhccCCeecCCCchhhhHHHHH-HHcCCCCCCCCCCcccccC
Q 006669          252 LIIP-ADFLCPISLELMRDPVIVATGQTYERSYIQR-WIDCGNVTCPKTQQKLEHL  305 (636)
Q Consensus       252 ~~~p-~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~-w~~~~~~~cP~~~~~l~~~  305 (636)
                      +.+| .+|.|+||++.+.+|+-.+|||.||-.||-. |.......||.|++.....
T Consensus       209 pfip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         209 PFIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             CcccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            3445 6899999999999999999999999999988 9887667799999865443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.023  Score=65.77  Aligned_cols=119  Identities=14%  Similarity=0.185  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHh----cCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHH
Q 006669          367 EERRAAVAEIRSLSKRSTDNRIIIAD----AGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIV  441 (636)
Q Consensus       367 ~~~~~Al~~L~~La~~~~~~r~~i~e----~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv  441 (636)
                      +-..-++.+|+++.+.+++-...+..    -|-.+.+...|.+ .++.++.-|+.++.-+..+.+.-.-+++.|.+..|+
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence            34456888999998888855443322    2677888888865 678899999999988888888888899999999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc
Q 006669          442 QILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ  486 (636)
Q Consensus       442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~  486 (636)
                      .+|.+. |..++.+..+|..|++..+......+.|++.-+.+++.
T Consensus      1820 ~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh
Confidence            998654 56788899999999988877666666666666555544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.029  Score=63.00  Aligned_cols=256  Identities=18%  Similarity=0.213  Sum_probs=164.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhC-cchHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIY-ENNKGL  430 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~-~~~k~~  430 (636)
                      .++.|++.|..+++.++-.|+..|..|++.+|.|--.+     -|.+.++|.. .+.=+....+.+..+|+-. |.... 
T Consensus       182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-  255 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-  255 (877)
T ss_pred             hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-
Confidence            58889999999999999999999999999888776544     3778887754 3333455566666777763 33222 


Q ss_pred             HHHhCChHHHHHHHhcCc-HHHHHHHHHHHHHccCCCc--hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          431 IMLAGAIPSIVQILRAGS-MEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                          ..+++|..++++.. +.....+..|+...+....  +....++ -.+..|-.++.+.++..|..++-|+..+...+
T Consensus       256 ----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktH  330 (877)
T KOG1059|consen  256 ----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH  330 (877)
T ss_pred             ----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence                35789999998874 5666666666654422111  1111111 14556666777888999999999999987655


Q ss_pred             chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhh
Q 006669          508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLC  586 (636)
Q Consensus       508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~  586 (636)
                      +-   .|.+ --..+++.|.+.+..++-.|+..|.-+.+ .++..+|     +..|+..+... ...-+..-+.-+..+|
T Consensus       331 p~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iC  400 (877)
T KOG1059|consen  331 PK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVS-KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISIC  400 (877)
T ss_pred             HH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhh-hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence            32   2221 12345778888999999999999988876 3344444     44565544332 2355666666666778


Q ss_pred             ccChHHHHHHHH-cCChHHHHHhhhc-CCHHHHHHHHHHHHHhhccc
Q 006669          587 KRDTENLACISR-LGAVIPLTELTKS-GTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       587 ~~~~~~~~~i~~-~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~~  631 (636)
                      +.+  +...+.. .-.+..|++|.+- |+.+...-|..++...-|..
T Consensus       401 S~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~  445 (877)
T KOG1059|consen  401 SQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVP  445 (877)
T ss_pred             hhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheech
Confidence            643  3333333 2346667777653 66777777777776655543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.018  Score=63.78  Aligned_cols=265  Identities=18%  Similarity=0.176  Sum_probs=168.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHH-HHHHHHHhhhCcchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH-AVTAILNLSIYENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~-Av~aL~nLs~~~~~k~~I  431 (636)
                      ..+.+.+.+++.+...+..|...+..+.++.  .-..+.+.+.+..|-............. +.-+.-.+..+-   ..-
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~  209 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPP  209 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCC
Confidence            4566777778778888888888888888654  3445666777778887776544433332 111111111100   012


Q ss_pred             HHhCChHHHHHHHhc---CcHHHHHHHHHHHHHccC-CCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          432 MLAGAIPSIVQILRA---GSMEARENAAATLFSLSL-LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~---~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      .+.+.++.+-.++.+   ....+|..|..+...+-. .+.+..+    -.++.++.-+.+..++.|..++..|..|..+.
T Consensus       210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~a  285 (569)
T KOG1242|consen  210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCA  285 (569)
T ss_pred             CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence            245566666666643   346677666655554421 1211111    23455554444447899999999999999888


Q ss_pred             chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH------------------------H-----HH---H
Q 006669          508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK------------------------I-----AI---V  555 (636)
Q Consensus       508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~------------------------~-----~i---~  555 (636)
                      +..-...-..+||.+.+.|-+..+++++.+..+|..+++..++-                        .     .+   +
T Consensus       286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V  365 (569)
T KOG1242|consen  286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEV  365 (569)
T ss_pred             hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeee
Confidence            88777888899999999999999999999999998887622211                        0     01   1


Q ss_pred             hcCcHHHHHHHHcCC----CHHHHHHHHHHHHHhhccC--hHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          556 KASTIPVLIVLLRTG----LPRNKENAAAILLSLCKRD--TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~~----s~~~ke~A~~~L~~L~~~~--~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      ++-.+..++.+|+++    +...+..++.+..|+|.--  +....-... -.+|-|...+.+..|.+|.-|..+|..+
T Consensus       366 ~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  366 DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence            222345555666543    4567788999999999754  322222222 2566666666667899999998888444

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.19  E-value=0.00034  Score=50.93  Aligned_cols=41  Identities=22%  Similarity=0.519  Sum_probs=34.9

Q ss_pred             cCccchhhc---cCCeecCCCchhhhHHHHHHHcCCCCCCCCCCc
Q 006669          259 LCPISLELM---RDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQ  300 (636)
Q Consensus       259 ~CPis~~~m---~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~  300 (636)
                      .||++.+.+   .-|+++++||+|+..+|.++. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            388998888   358899999999999999999 45678999874

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00012  Score=74.88  Aligned_cols=70  Identities=23%  Similarity=0.407  Sum_probs=55.4

Q ss_pred             CCCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCccccc-CCcccchhHHHHHHHHHh
Q 006669          253 IIPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEH-LTLTPNYVLRSLISQWCT  322 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~pn~~lr~lI~~w~~  322 (636)
                      .+-.+|.||||+++++-..+ -.|+|.||+.||-+-+..++..||.|++.+.. ..|.+....-.+|.+...
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~  110 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP  110 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence            34568999999999988776 57999999999999999999999999998854 455544445667766543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.15  E-value=0.0025  Score=53.23  Aligned_cols=86  Identities=34%  Similarity=0.465  Sum_probs=69.4

Q ss_pred             hHHHHHHH-hcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH
Q 006669          437 IPSIVQIL-RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR  515 (636)
Q Consensus       437 I~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~  515 (636)
                      |+.|++.| +++++.++..++.+|..+-          ...+++.|+.++++.++.++..|+.+|..+-          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            57889988 7779999999999999542          2256899999999999999999999999883          3


Q ss_pred             hchHHHHHHHhcCC-CHHHHHHHHHHHH
Q 006669          516 AGIISALLKMLTDS-RNCMVDEALTILS  542 (636)
Q Consensus       516 ~g~v~~Lv~lL~~~-~~~~~~~Al~~L~  542 (636)
                      ..+++.|.+++.++ +..++..|+.+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            45899999999774 5556788887774

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.08  E-value=0.026  Score=59.93  Aligned_cols=192  Identities=27%  Similarity=0.301  Sum_probs=131.7

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH
Q 006669          394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG  473 (636)
Q Consensus       394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~  473 (636)
                      ..++.++..+.+.+..++..|...+..+.          ..-+++.+..++.+.++.++..|+.+|..+          +
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence            46788999999888888888887754432          345789999999999999999999877665          2


Q ss_pred             hcCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH-HHhc----C
Q 006669          474 ASGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILS-VLAS----N  547 (636)
Q Consensus       474 ~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~-~La~----~  547 (636)
                      ....++.|+.++. +.+..++..++.+|..+-..          .++..++..+.+.....   +...+. .+..    -
T Consensus       103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~---a~~~~~~~~~~~r~~a  169 (335)
T COG1413         103 DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS---AAAALDAALLDVRAAA  169 (335)
T ss_pred             ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh---hhhhccchHHHHHHHH
Confidence            3357899999998 58899999999999987432          24788888887654322   111110 0000    0


Q ss_pred             hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          548 PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       548 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      ......+.....++.+...+......++..|+..|..+...+         ..+.+.+...+.+.+..++.++...|..+
T Consensus       170 ~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~  240 (335)
T COG1413         170 AEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEI  240 (335)
T ss_pred             HHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence            011112233457888999999888899999999999888754         23345555555566666666665555544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.04  E-value=0.0018  Score=54.19  Aligned_cols=86  Identities=36%  Similarity=0.472  Sum_probs=69.4

Q ss_pred             HHHHHHhh-cCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh
Q 006669          396 IPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA  474 (636)
Q Consensus       396 i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~  474 (636)
                      ||.|++.| +++++.++..|+.+|.++-          ...+++.|+.+++++++.++..|+.+|..+          +.
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence            67899988 7889999999999998553          124589999999999999999999999987          33


Q ss_pred             cCchHHHHhhhccCC-HHHHHHHHHHHH
Q 006669          475 SGAIPALVDLLQNGS-TRGRKDAATALF  501 (636)
Q Consensus       475 ~g~i~~Lv~LL~~~~-~~~k~~A~~aL~  501 (636)
                      ..+++.|.+++.+.+ ..++..|+.+|.
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            468899999998764 455788888773

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.01  E-value=0.00059  Score=55.52  Aligned_cols=39  Identities=33%  Similarity=0.687  Sum_probs=31.3

Q ss_pred             CccchhhccCC-------------eecCCCchhhhHHHHHHHcCCCCCCCCCC
Q 006669          260 CPISLELMRDP-------------VIVATGQTYERSYIQRWIDCGNVTCPKTQ  299 (636)
Q Consensus       260 CPis~~~m~dP-------------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~  299 (636)
                      |+||++.|.||             +..+|||.|-..||.+|++. +.+||.|+
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            99998888443             44689999999999999985 45999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.01  E-value=0.0005  Score=74.41  Aligned_cols=66  Identities=24%  Similarity=0.512  Sum_probs=53.3

Q ss_pred             CCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc-hhHHHHHHHH
Q 006669          254 IPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN-YVLRSLISQW  320 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn-~~lr~lI~~w  320 (636)
                      +.+++.||+|..++.||+. +.|||.||+.||..|... +..||.+.+.+......|. ...++.+..|
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            5678999999999999999 599999999999999987 8899999887766555542 2344555544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.018  Score=62.93  Aligned_cols=230  Identities=19%  Similarity=0.167  Sum_probs=156.4

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHc----cCCCchhH
Q 006669          395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSL----SLLDENKI  470 (636)
Q Consensus       395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~L----s~~~~~~~  470 (636)
                      .||.|-.-+...++.++...+..|..|-..+...-.-.-...++.|...|.+.+.+++..+-.+|.++    .+.+..  
T Consensus       168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s--  245 (675)
T KOG0212|consen  168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS--  245 (675)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc--
Confidence            34444444445678888888888877755443222111245677888888888888887666655553    222221  


Q ss_pred             HHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCH-HHHHHHH---HHHHHHh
Q 006669          471 IIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRN-CMVDEAL---TILSVLA  545 (636)
Q Consensus       471 ~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~-~~~~~Al---~~L~~La  545 (636)
                        .+. ..++.++.-+++..+..+..|+..|.....-.++.....-.|++..++..+.+.+. .+.+.+.   ..|..++
T Consensus       246 --~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~  323 (675)
T KOG0212|consen  246 --MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV  323 (675)
T ss_pred             --cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence              132 67788899999999999999999999987766665555668888888888877554 3444443   2455666


Q ss_pred             cChhhHHHHHhcC-cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHH
Q 006669          546 SNPEAKIAIVKAS-TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLL  624 (636)
Q Consensus       546 ~~~~~~~~i~~~g-~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL  624 (636)
                      +.+...+. ++.| .+..|.+.+.+....+|-.+..-+..|-.+-|...-. -.....+.|+.-+.+.++.+..++.+++
T Consensus       324 s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd~vvl~~L~ll  401 (675)
T KOG0212|consen  324 SSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSDEVVLLALSLL  401 (675)
T ss_pred             hhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence            66665555 4444 5678888888888889988887777776554432222 2344677888888888888888888888


Q ss_pred             HHhhcc
Q 006669          625 EHLRKL  630 (636)
Q Consensus       625 ~~l~~~  630 (636)
                      ..++..
T Consensus       402 a~i~~s  407 (675)
T KOG0212|consen  402 ASICSS  407 (675)
T ss_pred             HHHhcC
Confidence            888754

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.00029  Score=79.46  Aligned_cols=53  Identities=17%  Similarity=0.337  Sum_probs=48.4

Q ss_pred             ccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          258 FLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       258 f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      ++||+|..=.+|-|++-|||.||-.||+.-+......||.|+..+...++.+-
T Consensus       644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I  696 (698)
T KOG0978|consen  644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI  696 (698)
T ss_pred             eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence            79999999999999999999999999999999888999999999987776543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.93  E-value=0.002  Score=45.53  Aligned_cols=39  Identities=36%  Similarity=0.555  Sum_probs=36.2

Q ss_pred             hhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 006669          384 TDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLS  422 (636)
Q Consensus       384 ~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs  422 (636)
                      ++++..+.+.|+++.|+.+|.+++.+++..|+++|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            358889999999999999999999999999999999987

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.00049  Score=74.14  Aligned_cols=72  Identities=22%  Similarity=0.408  Sum_probs=56.4

Q ss_pred             CCcccCccchhhccCCeecCCCchhhhHHHHHHHcC----CCCCCCCCCcccccCCcccch----hHHHHHHHHHhhccc
Q 006669          255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC----GNVTCPKTQQKLEHLTLTPNY----VLRSLISQWCTMHNI  326 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~----~~~~cP~~~~~l~~~~l~pn~----~lr~lI~~w~~~n~~  326 (636)
                      +.+..||||++...=|+.+.|||.||-.||-++|..    +...||.|+..+...++.|-+    .-++-+...+..||+
T Consensus       184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~  263 (513)
T KOG2164|consen  184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI  263 (513)
T ss_pred             CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence            348999999999999999999999999999887753    456799999988776665432    224447777877873

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.17  Score=52.06  Aligned_cols=271  Identities=15%  Similarity=0.128  Sum_probs=169.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhh----HHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDN----RIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~----r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      |-..|...+..++.-+++.+..+..+.+.|    -..++.+|..+.++.+...+|.++-..|...+..++..+..-+.|.
T Consensus        87 LQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiF  166 (524)
T KOG4413|consen   87 LQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIF  166 (524)
T ss_pred             HHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhc
Confidence            333344444455555666555554443322    2234567889999999999999999999999999999888888888


Q ss_pred             HhCChHHHHHH--HhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhcc-CCHHHHHHHHHHHHhhhhccc
Q 006669          433 LAGAIPSIVQI--LRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQN-GSTRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       433 ~~G~I~~Lv~l--L~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~-~~~~~k~~A~~aL~nL~~~~~  508 (636)
                      ++..+..+-..  -..-+.-+|......+..+++.+ +.....-.+|.+..|..-|+. .+.-+..+.+.....|...+.
T Consensus       167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH  246 (524)
T KOG4413|consen  167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH  246 (524)
T ss_pred             ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence            87766554322  22334556666777777665543 344444555777776665654 345567777888888988888


Q ss_pred             hHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcC----hhhHHHHHhc--CcHHHHHHHHcCCCHHHHHHHHH
Q 006669          509 NKGRAVRAGIISALLKMLTD--SRNCMVDEALTILSVLASN----PEAKIAIVKA--STIPVLIVLLRTGLPRNKENAAA  580 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~----~~~~~~i~~~--g~i~~Lv~lL~~~s~~~ke~A~~  580 (636)
                      ++..+.+.|.|..+..++..  .++--.-.++.....+-+.    .-.-+++.+.  -+|....+++...+|...+.|+.
T Consensus       247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiD  326 (524)
T KOG4413|consen  247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAID  326 (524)
T ss_pred             hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHH
Confidence            99999999999999999965  2333333344444333332    2122334332  34666777888888999999999


Q ss_pred             HHHHhhccChHHHHHHHHcCC--hHHHHHhhhcCCHHH-HHHHHHHHHHhh
Q 006669          581 ILLSLCKRDTENLACISRLGA--VIPLTELTKSGTERA-KRKATSLLEHLR  628 (636)
Q Consensus       581 ~L~~L~~~~~~~~~~i~~~G~--i~~L~~Ll~~g~~~~-k~kA~~lL~~l~  628 (636)
                      ++..|.++. +....+...|-  ...|+--..+.+..+ ++.|..+|..+.
T Consensus       327 alGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  327 ALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             HHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            999988743 44444444443  233332222223333 344445555554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.87  E-value=0.09  Score=58.43  Aligned_cols=222  Identities=18%  Similarity=0.211  Sum_probs=143.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .++.++....+....+|..|....+.+...-+.....    -.+|.++.-+..........++..|..|+.....+-...
T Consensus       217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~  292 (569)
T KOG1242|consen  217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC  292 (569)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence            4566666666677778887777766654322111111    123444443333456778899999999888666666666


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR  512 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~  512 (636)
                      .+..||.+.++|.+..+++++.+..+|..+...-+|....   -.+|.|++-+.+.+..+ ..+...|..=..-+     
T Consensus       293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~-----  363 (569)
T KOG1242|consen  293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCYT-PECLDSLGATTFVA-----  363 (569)
T ss_pred             HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccch-HHHHHhhcceeeee-----
Confidence            7889999999999999999999999999998877766522   36788888887654222 22233332211111     


Q ss_pred             HHHhc----hHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          513 AVRAG----IISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       513 lv~~g----~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      .|++-    .+|.|-+-+...+..+...++.+..|+|.--+....+..  ...+|.|-..+...-|.+|.-++.+|..+-
T Consensus       364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~  443 (569)
T KOG1242|consen  364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALL  443 (569)
T ss_pred             eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            11122    344455555567888889999999999996544444432  123455545555556999999999997665


Q ss_pred             c
Q 006669          587 K  587 (636)
Q Consensus       587 ~  587 (636)
                      .
T Consensus       444 e  444 (569)
T KOG1242|consen  444 E  444 (569)
T ss_pred             H
Confidence            4

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.091  Score=54.07  Aligned_cols=279  Identities=13%  Similarity=0.131  Sum_probs=179.2

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH--HHhhcCCChHHHHHHHHHHHHhhh-Ccc
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVL--VNLLTTDDVMTQEHAVTAILNLSI-YEN  426 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~L--v~lL~s~d~~~~e~Av~aL~nLs~-~~~  426 (636)
                      +.+..+.++..+-..+.++-..|.+.|..++. -+..-..|.+......+  .++--.-+.-.+......+..++. .+.
T Consensus       126 NaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence            55667788888888899999999999999987 35555566655443332  332222233455666677777665 666


Q ss_pred             hHHHHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC--CHHHHHHHHH----H
Q 006669          427 NKGLIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG--STRGRKDAAT----A  499 (636)
Q Consensus       427 ~k~~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~--~~~~k~~A~~----a  499 (636)
                      .....-.+|.+..|..-|+. .+.-++.++......|...+..+..+.+.|.|..+..++...  +|-.+-.++.    .
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf  284 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF  284 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence            66667778888888877765 366778899999999999999999999999999888887633  2333332332    2


Q ss_pred             HHhhhhccchHHHHHHh--chHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCc--HHHHHHHHcCCC-HHH
Q 006669          500 LFNLCIYMGNKGRAVRA--GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKAST--IPVLIVLLRTGL-PRN  574 (636)
Q Consensus       500 L~nL~~~~~n~~~lv~~--g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~--i~~Lv~lL~~~s-~~~  574 (636)
                      +.++...+-.-..++++  -+|....+++...++.+.+.|+.+|..+-++.+|...+...|.  ...++.-....+ ..-
T Consensus       285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak  364 (524)
T KOG4413|consen  285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK  364 (524)
T ss_pred             hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence            33333333222333332  2455566777778899999999999999999999999988774  455554444433 333


Q ss_pred             HHHHHHHHHHhhccC---hH---------HHHH-H----HHc---CChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          575 KENAAAILLSLCKRD---TE---------NLAC-I----SRL---GAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       575 ke~A~~~L~~L~~~~---~~---------~~~~-i----~~~---G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++.+..+|.+++..-   ++         .... +    .+.   .-......+++...+..+-.|...+.-+..
T Consensus       365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            556677777766421   11         1111 1    111   112333445566677777777766665543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.83  E-value=0.047  Score=63.60  Aligned_cols=228  Identities=15%  Similarity=0.105  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHhcc---ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHH-hhhCcchHHHHHHhCChHHHHHHH
Q 006669          369 RRAAVAEIRSLSKR---STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILN-LSIYENNKGLIMLAGAIPSIVQIL  444 (636)
Q Consensus       369 ~~~Al~~L~~La~~---~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~n-Ls~~~~~k~~I~~~G~I~~Lv~lL  444 (636)
                      |.+-+++|..|++-   .+=.-..-..-|..|.++++|++...+++.--+-+=.. |+.++..+..+++.++-.-++.+|
T Consensus       484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence            33444555555532   22222233345899999999998877776554444333 455777788888888878888888


Q ss_pred             hc-C--cHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhcc-chHHHHHHhch
Q 006669          445 RA-G--SMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYM-GNKGRAVRAGI  518 (636)
Q Consensus       445 ~~-~--~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~  518 (636)
                      .. +  ++|-+..|+-+|..+..+-. ......+.+.+...++.|.++ .+-.+...+-+|..|-.+. ++|-.=++.++
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A  643 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA  643 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence            76 3  46888888888888866532 344445557888888888886 4778899999999987654 56767778999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----hhhHHH-----------HHhcCcHH----HHHHHHcCCCHHHHHHH
Q 006669          519 ISALLKMLTDSRNCMVDEALTILSVLASN-----PEAKIA-----------IVKASTIP----VLIVLLRTGLPRNKENA  578 (636)
Q Consensus       519 v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-----~~~~~~-----------i~~~g~i~----~Lv~lL~~~s~~~ke~A  578 (636)
                      ...|+.+|++.-++++..|+.+|..+.++     ++....           +.-+..++    .++.++..+++-.+...
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev  723 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV  723 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence            99999999999999999999999988774     222211           11123333    67777788899888888


Q ss_pred             HHHHHHhhccChHHHHHH
Q 006669          579 AAILLSLCKRDTENLACI  596 (636)
Q Consensus       579 ~~~L~~L~~~~~~~~~~i  596 (636)
                      +-.|.....+...+...+
T Consensus       724 ~v~ls~~~~g~~~~~~~v  741 (1387)
T KOG1517|consen  724 VVALSHFVVGYVSHLKVV  741 (1387)
T ss_pred             HHHHHHHHHhhHHHhHHH
Confidence            888888777655444443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.81  E-value=0.055  Score=55.47  Aligned_cols=228  Identities=18%  Similarity=0.162  Sum_probs=158.9

Q ss_pred             HhhcCCChHHHHHHHHHHHHhhhCcchHHHHH-HhCChHHHHHHHhc--CcHHHHHHHHHHHHHccCCCchhHHHHhc-C
Q 006669          401 NLLTTDDVMTQEHAVTAILNLSIYENNKGLIM-LAGAIPSIVQILRA--GSMEARENAAATLFSLSLLDENKIIIGAS-G  476 (636)
Q Consensus       401 ~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~-~~G~I~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g  476 (636)
                      ++++.=++-++.-|+.+|-+|...++.|..+- +..+-..+++++++  |..+.+.++.-+++-|++.++....|-.. .
T Consensus       156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d  235 (432)
T COG5231         156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34444455578889999999998777766554 45577788999886  46889999999999999998877555555 7


Q ss_pred             chHHHHhhhccC-CHHHHHHHHHHHHhhhhcc--chHHHHHHhchHHHHHHHhcC---CCHHHHHHHH---HHH------
Q 006669          477 AIPALVDLLQNG-STRGRKDAATALFNLCIYM--GNKGRAVRAGIISALLKMLTD---SRNCMVDEAL---TIL------  541 (636)
Q Consensus       477 ~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~--~n~~~lv~~g~v~~Lv~lL~~---~~~~~~~~Al---~~L------  541 (636)
                      .+..|+.+++.. ...+-+-++..+.|++.-.  +....+.-.|-+..-++.|..   .+++++...-   ..|      
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            888888888765 3456667778888887622  233344444544455555533   3444432211   111      


Q ss_pred             --------HHH-----hcCh---------hhHHHHHhc--CcHHHHHHHHcCCCHH-HHHHHHHHHHHhhccChHHHHHH
Q 006669          542 --------SVL-----ASNP---------EAKIAIVKA--STIPVLIVLLRTGLPR-NKENAAAILLSLCKRDTENLACI  596 (636)
Q Consensus       542 --------~~L-----a~~~---------~~~~~i~~~--g~i~~Lv~lL~~~s~~-~ke~A~~~L~~L~~~~~~~~~~i  596 (636)
                              ..|     +-+|         .+...+.+.  ..+..|.++++...+. .-.-|+.=+..+.+..|+....+
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence                    111     1111         233444443  3678999999887655 44567888888999999999999


Q ss_pred             HHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          597 SRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       597 ~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      ...|+-..+..|+.+.++++|-.|.+++..+-
T Consensus       396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999999999988664

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0011  Score=70.92  Aligned_cols=71  Identities=23%  Similarity=0.422  Sum_probs=57.2

Q ss_pred             CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc-----ccchhHHHHHHHHHhh
Q 006669          252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL-----TPNYVLRSLISQWCTM  323 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l-----~pn~~lr~lI~~w~~~  323 (636)
                      ..++.+|.|-||...+.+||++||||+||+.||++-.+ ....||.|+..+.....     .+|+....+|..++..
T Consensus        79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            35689999999999999999999999999999999665 46779999988875322     2356666778777654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.16  Score=57.19  Aligned_cols=250  Identities=16%  Similarity=0.171  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchH
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDN-RIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNK  428 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k  428 (636)
                      ++..+.++.+|++.-+.++.+|+-.+..+.-..++. |      ..+|.|+.-|..+|+.++..|+.++..|+. +|.|.
T Consensus       143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence            446778899999999999999999888776544433 3      346899999999999999999999999998 77765


Q ss_pred             HHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCH-HHHHHHHHHHH--hhh
Q 006669          429 GLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGST-RGRKDAATALF--NLC  504 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~-~~k~~A~~aL~--nL~  504 (636)
                      -.+     -|.+.++|... +.=+...-...+.+|+....   .++ ...+++|.+++.+.+. .....+..++.  |++
T Consensus       217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s  287 (877)
T KOG1059|consen  217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMS  287 (877)
T ss_pred             ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence            433     36777777643 22233345667777776543   111 1367899999886532 22223332222  455


Q ss_pred             hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669          505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL  583 (636)
Q Consensus       505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  583 (636)
                      ...++....+.. +|+.|-.++.+.++.++..++-++..+.. ||...++-.     ..++..|...++.+|-.|+..|.
T Consensus       288 ~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  288 SGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             cCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchhHHHHHHHHH
Confidence            544455554443 67778888888899999999999988877 665544432     35677888888999999999999


Q ss_pred             HhhccChHHHHHHHHcCChHHHHHhhh--cCCHHHHHHHHHHHHHhh
Q 006669          584 SLCKRDTENLACISRLGAVIPLTELTK--SGTERAKRKATSLLEHLR  628 (636)
Q Consensus       584 ~L~~~~~~~~~~i~~~G~i~~L~~Ll~--~g~~~~k~kA~~lL~~l~  628 (636)
                      .+...  ++..+++     ..|+..+.  +|+.---+-...++..++
T Consensus       362 gmVsk--kNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS  401 (877)
T KOG1059|consen  362 GMVSK--KNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICS  401 (877)
T ss_pred             HHhhh--hhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence            88853  4444442     23332221  233333345555555544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.034  Score=61.93  Aligned_cols=218  Identities=19%  Similarity=0.182  Sum_probs=146.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Cc-----c
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YE-----N  426 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~-----~  426 (636)
                      ++.-|+......+..++..|+..|-.|.....-.+.      .....+..++.++..++..|+.++.-++. ++     +
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            344488888888999999999998888753322222      24567888888888899988877766554 21     1


Q ss_pred             hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-------hhHH----------------------------
Q 006669          427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-------NKII----------------------------  471 (636)
Q Consensus       427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-------~~~~----------------------------  471 (636)
                      +-+.=....++..+.+.++..+..+|..|+..|+.+-...+       .|..                            
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence            11111223467788888888888888888877776543322       1111                            


Q ss_pred             ----------------HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHH
Q 006669          472 ----------------IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVD  535 (636)
Q Consensus       472 ----------------i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~  535 (636)
                                      |..+|+-.++|+=|.+.=.+++++|+..++.|+.+.+.-.    ..++..|++|+.++...++.
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VRL  428 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVRL  428 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHHH
Confidence                            2222333445554544446899999999999987654321    22677899999999999999


Q ss_pred             HHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          536 EALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       536 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                      .|+.+|..++.+-.-     ++.-++.+++.|...++.+|+..-.+|.+.
T Consensus       429 ~ai~aL~~Is~~l~i-----~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  429 KAIFALTMISVHLAI-----REEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             HHHHHHHHHHHHhee-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999999999887332     334466777778777888887766666543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.67  E-value=0.0038  Score=44.05  Aligned_cols=40  Identities=30%  Similarity=0.459  Sum_probs=36.3

Q ss_pred             cchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccC
Q 006669          425 ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSL  464 (636)
Q Consensus       425 ~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~  464 (636)
                      ++++..+.+.|+++.|+.+|++++.+++..++++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4578888999999999999998899999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.025  Score=62.92  Aligned_cols=173  Identities=21%  Similarity=0.206  Sum_probs=128.4

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH--HHHHH---hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch
Q 006669          394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK--GLIML---AGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN  468 (636)
Q Consensus       394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k--~~I~~---~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~  468 (636)
                      ..+|.|..+|.+++...++-|..+|-.++.+....  .....   .-.+|.++...++.++..|..|..++-....... 
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence            46899999999999999999999999887643211  10001   1257888889999999999999998876654332 


Q ss_pred             hHHHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669          469 KIIIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN  547 (636)
Q Consensus       469 ~~~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  547 (636)
                      ...+... .++..|..+-.+.+++++++.+.++..|.-....|-.=-=.++|..+++.-++.++++.-+|+.....+|..
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ  286 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence            3333333 677888888888899999999999999875554332222257888888888899999999999999999999


Q ss_pred             hhhHHHHHh--cCcHHHHHHHH
Q 006669          548 PEAKIAIVK--ASTIPVLIVLL  567 (636)
Q Consensus       548 ~~~~~~i~~--~g~i~~Lv~lL  567 (636)
                      +-.+..+..  ...||.|+.-+
T Consensus       287 pi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  287 PICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             cCcHHHHHHHHHHHHHHHHccC
Confidence            866666554  35677777544

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.62  E-value=0.053  Score=50.73  Aligned_cols=122  Identities=16%  Similarity=0.164  Sum_probs=96.3

Q ss_pred             HHHHhcCchHHHHhhhccCCH------HHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHH
Q 006669          470 IIIGASGAIPALVDLLQNGST------RGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMVDEALTIL  541 (636)
Q Consensus       470 ~~i~~~g~i~~Lv~LL~~~~~------~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L  541 (636)
                      ......+|+..|+.++.+|+.      .....++.++..|.-+.-.-...++...|..++..+..  .+..+...|+++|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            345667899999999998863      56667888888887665445567777788888888865  3678899999999


Q ss_pred             HHHhcChhhHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669          542 SVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE  591 (636)
Q Consensus       542 ~~La~~~~~~~-~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~  591 (636)
                      .++..+....- .+.++=.++.|+..|+.+++..+.+|.+.+-.|....++
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99998777644 444455699999999999999999999999887765543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.13  Score=61.09  Aligned_cols=222  Identities=16%  Similarity=0.173  Sum_probs=134.1

Q ss_pred             cCCChHHHHHHHHHHHHhhhCcchHHHHHHh--CChHHHHHHHhcCcHHHHHHHHHHHHHccCC--CchhHHHHhcCchH
Q 006669          404 TTDDVMTQEHAVTAILNLSIYENNKGLIMLA--GAIPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIP  479 (636)
Q Consensus       404 ~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~--G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~  479 (636)
                      ++.+..+|..+..+|..|+..+.........  .....|..-+++....++...+.+|..|-..  .++...+.  ..|+
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~  741 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP  741 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence            3457889999999999998764443333221  1223333444444555666666666655322  23333332  2455


Q ss_pred             HHHhhhccCCHHHHHHHHHHHHhhhh----ccchHHHHHHhchHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCh-hh
Q 006669          480 ALVDLLQNGSTRGRKDAATALFNLCI----YMGNKGRAVRAGIISALLKMLT----DSRNCMVDEALTILSVLASNP-EA  550 (636)
Q Consensus       480 ~Lv~LL~~~~~~~k~~A~~aL~nL~~----~~~n~~~lv~~g~v~~Lv~lL~----~~~~~~~~~Al~~L~~La~~~-~~  550 (636)
                      -++-.+++.+...++.|..+|.+++.    ..+....  ...+|...+.++.    .....++...+-++..+.... ..
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~  819 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI  819 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence            55555577888999999999998872    1111011  1114444444443    233333322233333333211 11


Q ss_pred             HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          551 KIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       551 ~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      -....=.+.+..+..+|.+.++.+...|+..+..++..-|+.+..--..-+++.+..++++++...+.|+.-+|+.|.+
T Consensus       820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            1111112345566667778899999999999999998888776665555689999999999999999999999998865

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.32  E-value=0.019  Score=49.63  Aligned_cols=66  Identities=20%  Similarity=0.296  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHc--CCCHHHHHHHHHHHHHhhccChHHHHHHHH
Q 006669          533 MVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLR--TGLPRNKENAAAILLSLCKRDTENLACISR  598 (636)
Q Consensus       533 ~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~--~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~  598 (636)
                      ++...+.+|+|||. ++..+..+.+.|+||.++..-.  ..+|-.+|.|+.++.+||.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            35678899999997 6778999999999999988654  357999999999999999999998888754

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.30  E-value=0.3  Score=48.56  Aligned_cols=177  Identities=14%  Similarity=0.172  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCch--hHHHHhcCchHHHH
Q 006669          410 TQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDEN--KIIIGASGAIPALV  482 (636)
Q Consensus       410 ~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv  482 (636)
                      -.-+|+..|--++.+++.+..+..+..---+-..|..+     ..-.|..+.+++..|...++.  -..+...+.+|..+
T Consensus        95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            34577777778888999999999876544455555432     356788999999999877652  34455669999999


Q ss_pred             hhhccCCHHHHHHHHHHHHhhhhccchHHHHHH--------hchHHHH-HHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Q 006669          483 DLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR--------AGIISAL-LKMLTDSRNCMVDEALTILSVLASNPEAKIA  553 (636)
Q Consensus       483 ~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~--------~g~v~~L-v~lL~~~~~~~~~~Al~~L~~La~~~~~~~~  553 (636)
                      ..+..|+...|.-|...+..+..++.+-..+.+        .-.+..+ .++.+.++..+...++.+..+|+.+|..|.+
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a  254 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA  254 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999888777655333322        1123333 3334458899999999999999999999988


Q ss_pred             HHhc--CcH--HHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          554 IVKA--STI--PVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       554 i~~~--g~i--~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      +...  +.+  ...-.+++ .++..|..-...+.++|.
T Consensus       255 L~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  255 LRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             HHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence            7641  111  11222333 345566666666666664

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.23  E-value=0.0025  Score=65.27  Aligned_cols=65  Identities=12%  Similarity=0.324  Sum_probs=50.4

Q ss_pred             CCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC----cccchhHHHHHHH
Q 006669          254 IPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT----LTPNYVLRSLISQ  319 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~----l~pn~~lr~lI~~  319 (636)
                      +-....|++|..+|-|+-+ +.|=|||||+||-+++.. ..+||.|...+..+.    +.+..+++.++.+
T Consensus        12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK   81 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK   81 (331)
T ss_pred             cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence            3456789999999999986 689999999999999987 789999987665443    3444555555543

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.21  E-value=0.084  Score=49.40  Aligned_cols=116  Identities=15%  Similarity=0.141  Sum_probs=97.4

Q ss_pred             HHHHHhchHHHHHHHhcCCC------HHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHH
Q 006669          511 GRAVRAGIISALLKMLTDSR------NCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTG--LPRNKENAAAI  581 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~~------~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~  581 (636)
                      ..++..|++..|++++.++.      ..+...++.++..|-.+.- +. ...+..+|..++.++...  ++.+.+.|.++
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            46788899999999997744      4677888999999988755 34 455667899999999754  47889999999


Q ss_pred             HHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          582 LLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      |-+++.+++.....+.++=-++.|...++.+++..+.+|..++.-|
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL  129 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL  129 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999998888788888877899999999999999999999998765

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.18  E-value=0.016  Score=43.98  Aligned_cols=55  Identities=25%  Similarity=0.184  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 006669          490 TRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVL  544 (636)
Q Consensus       490 ~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L  544 (636)
                      ++++..|+++|.+++...+....-....+++.|+.+|.++++.++..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4688999999999887766665556678999999999999999999999999875

...

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.12  E-value=0.027  Score=48.78  Aligned_cols=65  Identities=23%  Similarity=0.359  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhh-CcchHHHHHH
Q 006669          369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSI-YENNKGLIML  433 (636)
Q Consensus       369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~-~~~~k~~I~~  433 (636)
                      +...++.|.+++..++.++..+.+.|++|.+++...-  .+|.+++.|+.++.||+. +++|+..|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4556788999999999999999999999999997754  568999999999999998 8899998875

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.031  Score=60.85  Aligned_cols=176  Identities=13%  Similarity=0.103  Sum_probs=127.3

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch--
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN--  427 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~--  427 (636)
                      +...++.|++.|+.+..-+.--+...+.++.-.-..-+..+.+.|.|..|++++.+.|...|.+.++.|..+..+.++  
T Consensus       429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e  508 (743)
T COG5369         429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE  508 (743)
T ss_pred             ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence            334566777777765444444566677777665566788899999999999999999999999999999999884433  


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc----hhHHHHh---cC-chHHHHhhhccCCHHHHHHHHHH
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE----NKIIIGA---SG-AIPALVDLLQNGSTRGRKDAATA  499 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~---~g-~i~~Lv~LL~~~~~~~k~~A~~a  499 (636)
                      +-.....-++..+++..+.+...++.....+|.|+..+..    .+.....   .. ..+.|++.+...+|-.....+-.
T Consensus       509 kf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yi  588 (743)
T COG5369         509 KFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYI  588 (743)
T ss_pred             hhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHH
Confidence            4455667788999999999999999999999999976432    2222211   22 56677888877777666666888


Q ss_pred             HHhhhhccchHHHHHH--hchHHHHHHH
Q 006669          500 LFNLCIYMGNKGRAVR--AGIISALLKM  525 (636)
Q Consensus       500 L~nL~~~~~n~~~lv~--~g~v~~Lv~l  525 (636)
                      |.+++.++++...++.  ...+..+.+.
T Consensus       589 lv~~aa~d~~l~~~V~~q~~~L~~i~ei  616 (743)
T COG5369         589 LVRNAACDDTLDYIVQSQEDMLDSIFEI  616 (743)
T ss_pred             HHHHHhccchHHHHHHhHHHHHHHHHHH
Confidence            8888888888666553  3444443333

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.03  E-value=0.015  Score=44.23  Aligned_cols=55  Identities=33%  Similarity=0.192  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          449 MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       449 ~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                      +.+|..|+++|.+++........-.....++.|+.+|++.++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5689999999999887666555555568999999999999999999999999875

...

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.99  E-value=0.009  Score=59.81  Aligned_cols=65  Identities=22%  Similarity=0.369  Sum_probs=51.4

Q ss_pred             ccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcc-cccCCcccchhHHHHHHHHHh
Q 006669          258 FLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQK-LEHLTLTPNYVLRSLISQWCT  322 (636)
Q Consensus       258 f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~-l~~~~l~pn~~lr~lI~~w~~  322 (636)
                      +.||+|..++++|+-. .|||+||..||+.-+-...+.||.|... .--..++|.+.-+.-|+....
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk  341 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK  341 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence            9999999999999977 7899999999998887778999999652 223456677655555666654

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.99  E-value=0.047  Score=53.10  Aligned_cols=122  Identities=13%  Similarity=0.086  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHhhhhccchHHHHHH----------------hchHHHHHHHhcC------CCHHHHHHHHHHHHHHhc
Q 006669          489 STRGRKDAATALFNLCIYMGNKGRAVR----------------AGIISALLKMLTD------SRNCMVDEALTILSVLAS  546 (636)
Q Consensus       489 ~~~~k~~A~~aL~nL~~~~~n~~~lv~----------------~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~  546 (636)
                      .......++..|.||+...+....+++                ..++..|++.+..      ....-.+....+|+|++.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            334556677888888887777665544                2367788888754      234456788999999999


Q ss_pred             ChhhHHHHHhc--Cc--HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH--cCChHHHHHhhh
Q 006669          547 NPEAKIAIVKA--ST--IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR--LGAVIPLTELTK  610 (636)
Q Consensus       547 ~~~~~~~i~~~--g~--i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~--~G~i~~L~~Ll~  610 (636)
                      .+++|..+.+.  +.  +..|+-++.+.+.--|.-++.+|.|+|.....+...+-.  .++++.|+.-+.
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999999874  34  778888887778777889999999999976555443332  355666655543

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.94  E-value=0.096  Score=61.18  Aligned_cols=191  Identities=17%  Similarity=0.089  Sum_probs=139.1

Q ss_pred             hHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH-HhcCchHHHHhhhccCCHHHHHHHHHHHHh-hhhccchHHHHH
Q 006669          437 IPSIVQILRAGSMEARENAAATLFSLSLLDENKIII-GASGAIPALVDLLQNGSTRGRKDAATALFN-LCIYMGNKGRAV  514 (636)
Q Consensus       437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~n-L~~~~~n~~~lv  514 (636)
                      +|.++.+|-+.-  -|..|+..|...-....=..-+ ..-|.+|-+++||++...+.|..-+..=.. |+.++..+..++
T Consensus       474 LPiVLQVLLSQv--HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLv  551 (1387)
T KOG1517|consen  474 LPIVLQVLLSQV--HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLV  551 (1387)
T ss_pred             cchHHHHHHHHH--HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHH
Confidence            344455543332  2333555554432222222222 233999999999999877766654443333 566666678899


Q ss_pred             HhchHHHHHHHhcC---CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccC
Q 006669          515 RAGIISALLKMLTD---SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRD  589 (636)
Q Consensus       515 ~~g~v~~Lv~lL~~---~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~  589 (636)
                      +.++-...++.|.+   -+++-+..|+.+|+.++. .+-++.+..+.+.+..-++.|.++ .+-.++.++-.|..|-.+.
T Consensus       552 Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~  631 (1387)
T KOG1517|consen  552 KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY  631 (1387)
T ss_pred             hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc
Confidence            88777777777754   245677789999999988 467888999989999888999875 5888999999999888877


Q ss_pred             hHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       590 ~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ...+-.=.+.++.++|+.++.+.-+++|-.|..+|..+-+
T Consensus       632 ~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~  671 (1387)
T KOG1517|consen  632 DEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS  671 (1387)
T ss_pred             chhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence            7777666788999999999999999999999999987755

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.86  Score=52.01  Aligned_cols=226  Identities=16%  Similarity=0.145  Sum_probs=142.6

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc------------
Q 006669          358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE------------  425 (636)
Q Consensus       358 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~------------  425 (636)
                      .+...+++.+++..|..+|..+..-..+.-..-.+......-+.-+++++.++.-.++..=.+++..+            
T Consensus       223 cEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d  302 (859)
T KOG1241|consen  223 CEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD  302 (859)
T ss_pred             eecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33445678888999999988877544333333333334445555667788777666665555444211            


Q ss_pred             ----chHHHHHH---hCChHHHHHHHhcC-------cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHH
Q 006669          426 ----NNKGLIML---AGAIPSIVQILRAG-------SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTR  491 (636)
Q Consensus       426 ----~~k~~I~~---~G~I~~Lv~lL~~~-------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~  491 (636)
                          .....+++   .+.+|.|+++|...       ++.....|..+|.-++..-+  ..|+. ..+|.+-+-+++.+.+
T Consensus       303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~--D~Iv~-~Vl~Fiee~i~~pdwr  379 (859)
T KOG1241|consen  303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG--DDIVP-HVLPFIEENIQNPDWR  379 (859)
T ss_pred             cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc--ccchh-hhHHHHHHhcCCcchh
Confidence                00111221   36778888887541       35566666666665543321  12222 3444444567788899


Q ss_pred             HHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHH-HHHhcCcHHHHHHHHc
Q 006669          492 GRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKI-AIVKASTIPVLIVLLR  568 (636)
Q Consensus       492 ~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~-~i~~~g~i~~Lv~lL~  568 (636)
                      -+..|+.+.......+ +.+..-+-.+++|.++.++.+++--+++.+.+.|..++.. ++... ...-...++.++.=|.
T Consensus       380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~  459 (859)
T KOG1241|consen  380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN  459 (859)
T ss_pred             hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence            9999999999877655 3455555678999999999988888889999999999984 32211 1122233444444443


Q ss_pred             CCCHHHHHHHHHHHHHhhc
Q 006669          569 TGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       569 ~~s~~~ke~A~~~L~~L~~  587 (636)
                       ..|+.-.+++|++.+|+.
T Consensus       460 -DePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  460 -DEPRVASNVCWAFISLAE  477 (859)
T ss_pred             -hCchHHHHHHHHHHHHHH
Confidence             568999999999999984

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.46  Score=54.08  Aligned_cols=264  Identities=14%  Similarity=0.140  Sum_probs=163.3

Q ss_pred             HHHHHHHHhcCCCH-HHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcC--CChHHHHHHHHHHHHhhh-----
Q 006669          353 AIEALVRKLSSRSV-EERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTT--DDVMTQEHAVTAILNLSI-----  423 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~-----  423 (636)
                      .+..|+........ ..+..++..|..++.+ .+........ ..+..++.-...  ++..++-.|..+|.|-..     
T Consensus       130 li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n  208 (859)
T KOG1241|consen  130 LIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN  208 (859)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            34444444444333 4778889999999864 2333333333 345556655543  457789999999987543     


Q ss_pred             --CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-ch-hHHHHhcCchHHHHhhhccCCHHHHHHHHHH
Q 006669          424 --YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-EN-KIIIGASGAIPALVDLLQNGSTRGRKDAATA  499 (636)
Q Consensus       424 --~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~-~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~a  499 (636)
                        ++.++..|+     ..+++.-.+++.+++..|..+|..+.... ++ ...|.+ ..+..-+.-+++.++++...+..-
T Consensus       209 F~~E~ern~iM-----qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amks~~deValQaiEF  282 (859)
T KOG1241|consen  209 FNNEMERNYIM-----QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMKSDNDEVALQAIEF  282 (859)
T ss_pred             hccHhhhceee-----eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHH
Confidence              223333333     33444455668889999999988875432 22 222322 344444556677788887777765


Q ss_pred             HHhhhhcc----------------c-hHHHH--HHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHH
Q 006669          500 LFNLCIYM----------------G-NKGRA--VRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIA  553 (636)
Q Consensus       500 L~nL~~~~----------------~-n~~~l--v~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~  553 (636)
                      =.++|-..                + ++...  .-.+++|.|+++|..       ++......|-.+|..++.+.     
T Consensus       283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-----  357 (859)
T KOG1241|consen  283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-----  357 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-----
Confidence            55554321                0 11111  113688999999853       12234445555555554421     


Q ss_pred             HHhcCcHHHHHHH----HcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          554 IVKASTIPVLIVL----LRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       554 i~~~g~i~~Lv~l----L~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                        ....++.++.+    +++.+.+.++.|+.++..+-.+....+..-+..++++.++.++.+.+-.+++-+.|.+-.+.+
T Consensus       358 --~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d  435 (859)
T KOG1241|consen  358 --GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD  435 (859)
T ss_pred             --cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence              22344555544    456778889999999988887655556666677899999999998888999999999988876


Q ss_pred             c
Q 006669          630 L  630 (636)
Q Consensus       630 ~  630 (636)
                      +
T Consensus       436 ~  436 (859)
T KOG1241|consen  436 F  436 (859)
T ss_pred             h
Confidence            4

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.0047  Score=64.58  Aligned_cols=47  Identities=19%  Similarity=0.428  Sum_probs=40.5

Q ss_pred             ccCccchhhccC---CeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          258 FLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       258 f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      +.|-||+|-+.+   =+++||+|.|=..||-.|+.....+||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            699999999965   34699999999999999999877789999986543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.79  E-value=0.86  Score=46.10  Aligned_cols=192  Identities=14%  Similarity=0.139  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhh-------cCCC--h---HHHHHHHHHHHHhhhCcchHHHH
Q 006669          365 SVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLL-------TTDD--V---MTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL-------~s~d--~---~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      +++.++.|+.+|..--...++-.-.+-.. |.+..|+.=.       +.+.  +   .-.-+|++.|--++.+++.+..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            56778888888776554444444444443 6666665422       2121  1   22346666677788899999999


Q ss_pred             HHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCc--hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669          432 MLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC  504 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~  504 (636)
                      .++...--|...|+..     ....|..+.++++.|...++  .-..+...+.+|..+..+..|+.-.|.-|...+..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9988776677777543     24578899999999976544  3445566799999999999999999999999998887


Q ss_pred             hccchHHHH-------HH-hchHHHHHH-HhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh
Q 006669          505 IYMGNKGRA-------VR-AGIISALLK-MLTDSRNCMVDEALTILSVLASNPEAKIAIVK  556 (636)
Q Consensus       505 ~~~~n~~~l-------v~-~g~v~~Lv~-lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~  556 (636)
                      .++.+-..+       .. ..++..++. +..++++.+....+.+-..|+.++.++.++..
T Consensus       168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            666543333       22 223444443 34568999999999999999999999988764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.73  E-value=0.35  Score=55.95  Aligned_cols=168  Identities=22%  Similarity=0.207  Sum_probs=108.1

Q ss_pred             hcCCCHHHHHHHHHHH-HHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHH
Q 006669          361 LSSRSVEERRAAVAEI-RSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPS  439 (636)
Q Consensus       361 L~s~~~~~~~~Al~~L-~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~  439 (636)
                      +.+++...+..|.+.+ ..++.+++ --      -..+.+++...+.|.+++.-.---|.+.++.......+    +++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt   96 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT   96 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence            5556666777777643 33443322 11      12355666555677777766666666666633322222    3556


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchH
Q 006669          440 IVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGII  519 (636)
Q Consensus       440 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v  519 (636)
                      +.+=+.+.++..|-.|.+++..+=..    .  .-..+++++.+++.++++.+++.|+-|++++-..  ++....+.|.+
T Consensus        97 i~kDl~d~N~~iR~~AlR~ls~l~~~----e--l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~  168 (757)
T COG5096          97 IQKDLQDPNEEIRGFALRTLSLLRVK----E--LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLI  168 (757)
T ss_pred             HHhhccCCCHHHHHHHHHHHHhcChH----H--HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence            66667777888888888887766221    1  1124677888888888888888888888887532  33445567788


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669          520 SALLKMLTDSRNCMVDEALTILSVLASN  547 (636)
Q Consensus       520 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~  547 (636)
                      ..+..++.+.++.++.+|+.+|..+...
T Consensus       169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         169 DILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            8888888888888888888888877653

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.0046  Score=70.11  Aligned_cols=46  Identities=30%  Similarity=0.658  Sum_probs=41.3

Q ss_pred             CcccCccchhhccC-----CeecCCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669          256 ADFLCPISLELMRD-----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL  302 (636)
Q Consensus       256 ~~f~CPis~~~m~d-----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l  302 (636)
                      .+-.|+||.|.|..     |-.++|||.|...|+.+|++. ..+||.|+..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence            36789999999988     789999999999999999986 78999998743

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.72  E-value=0.44  Score=55.41  Aligned_cols=236  Identities=14%  Similarity=0.108  Sum_probs=132.1

Q ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHH-HHHHHHHHHhhhCcch
Q 006669          349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQ-EHAVTAILNLSIYENN  427 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~-e~Av~aL~nLs~~~~~  427 (636)
                      .+...+..+++.|...+.++|..|++++.-|++.-.+.+-.-    .+..|..-+-++....+ ..++......+.-+..
T Consensus        44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~  119 (1233)
T KOG1824|consen   44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS  119 (1233)
T ss_pred             chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence            345679999999999999999999999999885443333211    12333332222222222 2333333333322222


Q ss_pred             HHHHHHhCChHHHHHHHhcC------cHHHHHHHHHHHHHccC-CCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHH
Q 006669          428 KGLIMLAGAIPSIVQILRAG------SMEARENAAATLFSLSL-LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL  500 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL  500 (636)
                      ......+.+.+.+...|..+      ...++..++..+...-. ....-.. ...+....++.-+.+....+++.|+.+|
T Consensus       120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l  198 (1233)
T KOG1824|consen  120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL  198 (1233)
T ss_pred             cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence            22222334445555554432      22245555555443311 1110000 1124445555555555667899999999


Q ss_pred             HhhhhccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH---cCCCHHHHH
Q 006669          501 FNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL---RTGLPRNKE  576 (636)
Q Consensus       501 ~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL---~~~s~~~ke  576 (636)
                      ..|+...++ ...  .+++..|++-|.. ........-+.+|..+|.....|.----...+|.+.++.   ....++.+|
T Consensus       199 ~~la~~~~~-~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE  275 (1233)
T KOG1824|consen  199 GHLASSCNR-DLY--VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE  275 (1233)
T ss_pred             HHHHHhcCH-HHH--HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence            999875432 111  2355666666644 445555566777777776544443222235688888888   556789999


Q ss_pred             HHHHHHHHhhccChHH
Q 006669          577 NAAAILLSLCKRDTEN  592 (636)
Q Consensus       577 ~A~~~L~~L~~~~~~~  592 (636)
                      .+..++-.+....|..
T Consensus       276 ~~lQale~fl~rcp~e  291 (1233)
T KOG1824|consen  276 YCLQALESFLRRCPKE  291 (1233)
T ss_pred             HHHHHHHHHHHhChhh
Confidence            9999998877666643

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.67  E-value=0.48  Score=50.29  Aligned_cols=197  Identities=14%  Similarity=0.165  Sum_probs=144.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHH-----HHHhc--CCHHHHHHhhcCCChHHHHHHHHHHHHhhhC
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-----IIADA--GAIPVLVNLLTTDDVMTQEHAVTAILNLSIY  424 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-----~i~e~--g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~  424 (636)
                      +.+..|+..|..-+.+.+..+......+-+....++.     .+...  ..+..|+.--  +++++--.+-..|+....+
T Consensus        76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~  153 (335)
T PF08569_consen   76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH  153 (335)
T ss_dssp             THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence            3566788888888899999998888888776555543     33322  1222233222  4666778888899999999


Q ss_pred             cchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hh-HHHHhc--CchHHHHhhhccCCHHHHHHHHHHH
Q 006669          425 ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NK-IIIGAS--GAIPALVDLLQNGSTRGRKDAATAL  500 (636)
Q Consensus       425 ~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~-~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL  500 (636)
                      +.....|.....+..+......++-++...|..++..|-..+. -. ..+...  ..+...-.||.+++.-++..++..|
T Consensus       154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL  233 (335)
T PF08569_consen  154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL  233 (335)
T ss_dssp             HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence            8888888888888899999999999999999999998654433 22 233332  5667788899999999999999999


Q ss_pred             HhhhhccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Q 006669          501 FNLCIYMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPEA  550 (636)
Q Consensus       501 ~nL~~~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~  550 (636)
                      ..|..+..|...+..    ..-+..++.+|++.+..++-+|..+......+|..
T Consensus       234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            999999988665543    56788899999999999999999999988887653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.60  E-value=1.5  Score=50.48  Aligned_cols=248  Identities=16%  Similarity=0.120  Sum_probs=142.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGL  430 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~  430 (636)
                      +..+...++++.+++.++.+|+-+...+-+..|+.-..+     ++..-++|...+..+.-.++..+..++. ++++-..
T Consensus       142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~  216 (866)
T KOG1062|consen  142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSY  216 (866)
T ss_pred             HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence            356677788889999999999888877776666544433     4555666666666666667777777665 3333333


Q ss_pred             HHHhCChHHHHHHHhc---------------CcHHHHHHHHHHHHHccCCCchh-HHH-----------------HhcCc
Q 006669          431 IMLAGAIPSIVQILRA---------------GSMEARENAAATLFSLSLLDENK-III-----------------GASGA  477 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~~-~~i-----------------~~~g~  477 (636)
                      +-+  .++.+|..|+.               .+|-.+...+++|.-|-.++... ..|                 +.+=.
T Consensus       217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAIL  294 (866)
T KOG1062|consen  217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAIL  294 (866)
T ss_pred             HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence            322  45555555531               14556666666666665444321 111                 11111


Q ss_pred             hHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchHHHH---------HH--hchHH----HHHHHhcCCCHHHHHHHHHHH
Q 006669          478 IPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNKGRA---------VR--AGIIS----ALLKMLTDSRNCMVDEALTIL  541 (636)
Q Consensus       478 i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~~~l---------v~--~g~v~----~Lv~lL~~~~~~~~~~Al~~L  541 (636)
                      .+.+...+. ..+...+..|+.+|.....+++|--+-         +.  ..+|+    .+++.|.+++..++..|+..+
T Consensus       295 YE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs  374 (866)
T KOG1062|consen  295 YECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS  374 (866)
T ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            111111211 124456667777777665555432211         11  22332    367778888888888898888


Q ss_pred             HHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc-ChHHHH------HH-------HHcCChHHHHH
Q 006669          542 SVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR-DTENLA------CI-------SRLGAVIPLTE  607 (636)
Q Consensus       542 ~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~-~~~~~~------~i-------~~~G~i~~L~~  607 (636)
                      ..|.... +...|     +..|+.+|...++..|...+.-+..++.. .|+.+.      .+       +...++..++.
T Consensus       375 ~~lvn~~-Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~  448 (866)
T KOG1062|consen  375 YALVNES-NVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLR  448 (866)
T ss_pred             HHHhccc-cHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHH
Confidence            8777643 33333     56788888877888888877777766642 232221      11       22345677777


Q ss_pred             hhhcC
Q 006669          608 LTKSG  612 (636)
Q Consensus       608 Ll~~g  612 (636)
                      ++.++
T Consensus       449 LIa~~  453 (866)
T KOG1062|consen  449 LIANA  453 (866)
T ss_pred             HHhcC
Confidence            77666

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.58  E-value=0.0088  Score=61.28  Aligned_cols=54  Identities=15%  Similarity=0.381  Sum_probs=43.7

Q ss_pred             CCCcccCccchhhccC---Ce-ecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669          254 IPADFLCPISLELMRD---PV-IVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP  309 (636)
Q Consensus       254 ~p~~f~CPis~~~m~d---Pv-~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  309 (636)
                      -...|.||||+..|..   -| +.+|||.|...+|.+--  ....||+|+.++...++++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence            3567999999999954   23 46999999999998873  3567999999999887754

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.56  E-value=0.44  Score=54.01  Aligned_cols=166  Identities=18%  Similarity=0.192  Sum_probs=103.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhhcCCChHHHHH---HHHHHHHhhhCcch
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRST--DNRIIIADAGAIPVLVNLLTTDDVMTQEH---AVTAILNLSIYENN  427 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~--~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~---Av~aL~nLs~~~~~  427 (636)
                      .+..++..|++.++.++.+|+..+..+++--.  ..-..+...|.  .|...|..+++++.-.   |+.++.|.-.-  .
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm--~  875 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGM--T  875 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccc--c
Confidence            34566778899999999999999988875211  01122333443  3667777777777654   44444443210  0


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALFNLCIY  506 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~  506 (636)
                      +..=--.+.+|.|..+|++....+++++...+..++.......-..+ ...--.|+++|+..+...+.+|...+..++.-
T Consensus       876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka  955 (1172)
T KOG0213|consen  876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA  955 (1172)
T ss_pred             ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence            10000247899999999999999999999999998765322111000 02233578888888888888888888777531


Q ss_pred             cchHHHHHHhchHHHHHHHhcC
Q 006669          507 MGNKGRAVRAGIISALLKMLTD  528 (636)
Q Consensus       507 ~~n~~~lv~~g~v~~Lv~lL~~  528 (636)
                            +--..++..|++-|+.
T Consensus       956 ------IGPqdVLatLlnnLkv  971 (1172)
T KOG0213|consen  956 ------IGPQDVLATLLNNLKV  971 (1172)
T ss_pred             ------cCHHHHHHHHHhcchH
Confidence                  1114456666666643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.2  Score=58.56  Aligned_cols=135  Identities=17%  Similarity=0.208  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhhhhccchHHHHH-----HhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHH
Q 006669          492 GRKDAATALFNLCIYMGNKGRAV-----RAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIV  565 (636)
Q Consensus       492 ~k~~A~~aL~nL~~~~~n~~~lv-----~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~  565 (636)
                      -...+++||.|+....+.-..+.     --|-.+.+...+.. .++.+...|+.++..+..+.++...+...|.+..|+.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence            45678999999877665322221     13667777777765 6778999999999999999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHhh
Q 006669          566 LLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELT-KSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       566 lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll-~~g~~~~k~kA~~lL~~l~  628 (636)
                      +|++. |..++.+..+|..|++ +++...+....|++.-+..++ .+.++..|..|++++..|.
T Consensus      1821 lLHS~-PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1821 LLHSQ-PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred             HHhcC-hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence            99764 7789999999999997 556677777777777666554 5567888889999988764

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.43  E-value=0.0078  Score=64.70  Aligned_cols=50  Identities=20%  Similarity=0.364  Sum_probs=43.3

Q ss_pred             CcccCccchhhccCCeecCCCchhhhHHHHHHHc----CCCCCCCCCCcccccC
Q 006669          256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWID----CGNVTCPKTQQKLEHL  305 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~----~~~~~cP~~~~~l~~~  305 (636)
                      .+..|-+|.+.-.||+...|.|+|||.||.+|..    .++-+||+|...|+-.
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            4578999999999999999999999999988864    3467899998887654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.42  E-value=0.77  Score=51.14  Aligned_cols=149  Identities=19%  Similarity=0.217  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh---Ccc
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRST--DNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI---YEN  426 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~--~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~---~~~  426 (636)
                      ..+..++..|++..++++.+|+.....|++--.  ..-+.+...|.  .|..-|...++++.-..+.++..+..   ...
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            357778899999999999999988887765211  00122333342  25556666677766544444443322   111


Q ss_pred             hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669          427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALFNLC  504 (636)
Q Consensus       427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~  504 (636)
                      .+.-  -.|.+|.|..+|++....+..+..+.+..++.......-..+ ...--.|+++|++-+.+.+.+|...+..++
T Consensus       682 mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         682 MQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             cCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence            1111  258899999999999999999999998888765432111000 022335778888878888888776666554

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.0078  Score=60.79  Aligned_cols=47  Identities=15%  Similarity=0.129  Sum_probs=42.5

Q ss_pred             cCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccC
Q 006669          259 LCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL  305 (636)
Q Consensus       259 ~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~  305 (636)
                      -||||.+-|--||.++|+|.||..||.--...+..+||+|++++++.
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            49999999999999999999999999887766778899999998764

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.08  E-value=1.3  Score=44.23  Aligned_cols=145  Identities=17%  Similarity=0.114  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CChHHHHHHHHHHHHhhhCc--chHHHHHHhCChHHHH
Q 006669          369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----DDVMTQEHAVTAILNLSIYE--NNKGLIMLAGAIPSIV  441 (636)
Q Consensus       369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----~d~~~~e~Av~aL~nLs~~~--~~k~~I~~~G~I~~Lv  441 (636)
                      ...|+..+.-++. .++.|..+..+-.--.|-.+|..     .....+-.++.++..|.+.+  +.-..+...+.||..+
T Consensus        96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3456666666775 57888888887655555566643     33567888999999999843  3355667789999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-C-------chHHH-HhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669          442 QILRAGSMEARENAAATLFSLSLLDENKIIIGAS-G-------AIPAL-VDLLQNGSTRGRKDAATALFNLCIYMGNKGR  512 (636)
Q Consensus       442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g-------~i~~L-v~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~  512 (636)
                      +.+..|+...+.-|+.++..+-.+|..-..|.+. .       .+..+ ..+.+.++++..+.++++..+|+-++..|..
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a  254 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA  254 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999999999999999988887655444432 1       22222 2344567899999999999999877755554


Q ss_pred             HH
Q 006669          513 AV  514 (636)
Q Consensus       513 lv  514 (636)
                      +-
T Consensus       255 L~  256 (293)
T KOG3036|consen  255 LR  256 (293)
T ss_pred             HH
Confidence            43

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=0.32  Score=55.44  Aligned_cols=69  Identities=19%  Similarity=0.277  Sum_probs=58.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY  424 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~  424 (636)
                      ....|.+.++..++.++..|+-...++-..   +.....+.|.++.|-.++...++.+..+|+.+|.++...
T Consensus       122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence            467788889999999999999888888653   345667789999999999988999999999999998773

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=0.016  Score=58.53  Aligned_cols=47  Identities=13%  Similarity=0.411  Sum_probs=38.9

Q ss_pred             ccCccchhhc--cCC-eecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          258 FLCPISLELM--RDP-VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       258 f~CPis~~~m--~dP-v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      .-|-||+.=+  -|- +++||.|.|-+.||.+|...-...||+|+.++++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            6799998876  344 4589999999999999998666789999987764

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=95.05  E-value=2.1  Score=47.53  Aligned_cols=257  Identities=17%  Similarity=0.155  Sum_probs=124.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccc-----h-
Q 006669          355 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YEN-----N-  427 (636)
Q Consensus       355 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~-----~-  427 (636)
                      |+|-..|++.-.-++.++++.+..++..+...  ... ...|..|-.+|++.....+-.|+.+|-.|+. .|+     | 
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~--~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~  343 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGS--QFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNK  343 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecCh
Confidence            34444455555667888999988888654111  111 1356778888888899999999999999986 332     1 


Q ss_pred             --HHHHHHhC---ChHHHHHHHhcCcHHHHHHHHHHHHHccCC--CchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHH
Q 006669          428 --KGLIMLAG---AIPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL  500 (636)
Q Consensus       428 --k~~I~~~G---~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL  500 (636)
                        -..|-+.+   .--.+..+|+.|+.+....-...+-+...+  +..|..+.  .++..|-.+.    |+-+...+.-|
T Consensus       344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i--da~rsLsl~F----p~k~~s~l~FL  417 (898)
T COG5240         344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI--DALRSLSLLF----PSKKLSYLDFL  417 (898)
T ss_pred             hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH--HHHHHHHhhC----cHHHHHHHHHH
Confidence              12222211   223455667777665555444444443221  12222111  1111111111    12222233333


Q ss_pred             Hhhhhccch---HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH-------HHhcC--------cHHH
Q 006669          501 FNLCIYMGN---KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIA-------IVKAS--------TIPV  562 (636)
Q Consensus       501 ~nL~~~~~n---~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~-------i~~~g--------~i~~  562 (636)
                      .+.....++   +..     +|.++.+++. ..++.++.|+..|...-...+.-+.       ++++|        .|..
T Consensus       418 ~~~L~~eGg~eFK~~-----~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrh  491 (898)
T COG5240         418 GSSLLQEGGLEFKKY-----MVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRH  491 (898)
T ss_pred             HHHHHhcccchHHHH-----HHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHH
Confidence            332211111   111     2333444442 2345555555555444332221111       11111        1222


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          563 LIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       563 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +..-+--.+.-+|..|+.+|...+-+-.+   .+....+...|...+.+.++.+|..|+.+|++|+.
T Consensus       492 IyNR~iLEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         492 IYNRLILENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            22111113344566666666444332111   11122334556677788899999999999999974

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.96  E-value=0.12  Score=57.21  Aligned_cols=149  Identities=13%  Similarity=0.110  Sum_probs=98.3

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH---HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH-H
Q 006669          396 IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK---GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI-I  471 (636)
Q Consensus       396 i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k---~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~-~  471 (636)
                      |..++..|++..+.++.+|+.....|++--.++   +.+...|.  .|.+-|....+|+.-.-..++..+.+....+. +
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq  683 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ  683 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence            455667788888999999998888777522221   22222332  23445555577777666666666654433221 1


Q ss_pred             HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                      -=-.|.+|.|..+|++.+..+..+....+..+|.+.+...-.-+ ..+---|+++|.+.+.+++..|...+.-++.
T Consensus       684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            11248899999999999999999999988888876654322222 2345568888988888998888776666654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.95  E-value=2.9  Score=49.38  Aligned_cols=241  Identities=17%  Similarity=0.131  Sum_probs=145.3

Q ss_pred             HHHhcCCHHHHHHhhcC-----CChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHh----cCc----HHHHHHH
Q 006669          389 IIADAGAIPVLVNLLTT-----DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILR----AGS----MEARENA  455 (636)
Q Consensus       389 ~i~e~g~i~~Lv~lL~s-----~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~----~~~----~e~~~~A  455 (636)
                      .+.+.|++..|+.++.+     .+.......+.+|...++...|+..+.+.|+++.|++.|+    .++    ++..+.-
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            45567999999999975     2233444555666666678899999999999999999885    223    5666666


Q ss_pred             HHHHHHccCCCc---hhHHHH----------hcCchHHHHhhhccC----CHHHHHHHHHHHHhhhhccchHHHHHHhch
Q 006669          456 AATLFSLSLLDE---NKIIIG----------ASGAIPALVDLLQNG----STRGRKDAATALFNLCIYMGNKGRAVRAGI  518 (636)
Q Consensus       456 a~~L~~Ls~~~~---~~~~i~----------~~g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~  518 (636)
                      ..++..|.....   ......          ....+..|++.+.+.    ++......++.|-+|+..++.+...+-.-.
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F  271 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF  271 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence            666665532211   111111          112356666666543    578888889999999987766544322111


Q ss_pred             HHHHHHH--hcCCCHHHHHHHHHHHHHHhc----Ch---hhHHHHHhcCcHHHHHHHHcC--------CCHHHHH-----
Q 006669          519 ISALLKM--LTDSRNCMVDEALTILSVLAS----NP---EAKIAIVKASTIPVLIVLLRT--------GLPRNKE-----  576 (636)
Q Consensus       519 v~~Lv~l--L~~~~~~~~~~Al~~L~~La~----~~---~~~~~i~~~g~i~~Lv~lL~~--------~s~~~ke-----  576 (636)
                       .+.+++  +......--..-+..+..++.    +.   .-+..|++.|++...+++|..        .++.+++     
T Consensus       272 -~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  272 -KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             -HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence             222222  110000000122444444443    22   236788999999999988863        2455554     


Q ss_pred             ---HHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhccc
Q 006669          577 ---NAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       577 ---~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~~  631 (636)
                         .++.+|.-||.+....... +..++++.+..|=+. ++..+-..|--+|..++...
T Consensus       351 sLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             cHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence               4678888888866544433 556677777766554 35566667777777776543

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.89  E-value=0.02  Score=56.05  Aligned_cols=54  Identities=15%  Similarity=0.442  Sum_probs=47.5

Q ss_pred             CcccCccchhhccC----CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          256 ADFLCPISLELMRD----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       256 ~~f~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      ..|.||+|.+.+++    -|+-||||.++..|.++.+. +...||+|+.++.+.++++.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEee
Confidence            67999999999988    35689999999999999886 57899999999999888764

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.82  E-value=0.34  Score=55.51  Aligned_cols=194  Identities=13%  Similarity=0.129  Sum_probs=137.9

Q ss_pred             CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHH-HccCCCchhHHHHhcCchHHHHhhhccCC-HHHHHHHHHHHH
Q 006669          424 YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF-SLSLLDENKIIIGASGAIPALVDLLQNGS-TRGRKDAATALF  501 (636)
Q Consensus       424 ~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~-~~~k~~A~~aL~  501 (636)
                      +...+...++.|+...|+++...++++++..+..+|. .++...+-     ....++++...+.+.. --....++.++.
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            4444566778899999999999999999988888887 33332210     1145566666555432 234567889999


Q ss_pred             hhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH-HHHh-cCcHHHHHHHHcCCCHHHHHHH
Q 006669          502 NLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVK-ASTIPVLIVLLRTGLPRNKENA  578 (636)
Q Consensus       502 nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~-~i~~-~g~i~~Lv~lL~~~s~~~ke~A  578 (636)
                      ||+... ..|.++++.-.++.+-.++.+.++..+..++..+.||..++..-+ .+++ ...++.....+.....+....+
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            998765 458888888788887788888999999999999999999887544 3455 4567777777766556666667


Q ss_pred             HHHHHHhhccChHHHHH-HHHcCChHHHHHhhhcCCHHHHHHHHH
Q 006669          579 AAILLSLCKRDTENLAC-ISRLGAVIPLTELTKSGTERAKRKATS  622 (636)
Q Consensus       579 ~~~L~~L~~~~~~~~~~-i~~~G~i~~L~~Ll~~g~~~~k~kA~~  622 (636)
                      ++++..+......+|.. ..-..+...+..++.++.+.++..-..
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~  692 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV  692 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence            77777676666666663 333567888888888888888755443

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.014  Score=57.17  Aligned_cols=34  Identities=32%  Similarity=0.532  Sum_probs=30.8

Q ss_pred             CcccCccchhhccCCeecCCCchhhhHHHHHHHc
Q 006669          256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWID  289 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~  289 (636)
                      +--+|.+|++..+|||+.+.|+.|||.+|-+++-
T Consensus        42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             CcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            3348999999999999999999999999999875

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.76  E-value=2  Score=44.47  Aligned_cols=221  Identities=15%  Similarity=0.071  Sum_probs=142.3

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHH-HhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhhCcchHHHHHH-hCChHHH
Q 006669          365 SVEERRAAVAEIRSLSKRSTDNRIII-ADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSIYENNKGLIML-AGAIPSI  440 (636)
Q Consensus       365 ~~~~~~~Al~~L~~La~~~~~~r~~i-~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~~~~~k~~I~~-~G~I~~L  440 (636)
                      ++-.+.-|++++.++.. .++.|..+ ++.-.-..++..++.  ++..+|.+.+-+++-|+.++.....|-+ -..|..+
T Consensus       162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            34456678888888875 45666554 344344567777765  5678999999999999887666544443 3567788


Q ss_pred             HHHHhcCc-HHHHHHHHHHHHHccCCC--chhHHHHhcCchHHHHhhhccC---CHHHHHHH---------------HH-
Q 006669          441 VQILRAGS-MEARENAAATLFSLSLLD--ENKIIIGASGAIPALVDLLQNG---STRGRKDA---------------AT-  498 (636)
Q Consensus       441 v~lL~~~~-~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~LL~~~---~~~~k~~A---------------~~-  498 (636)
                      +.+.+... ..+-.-+++++.|+....  ..-..+...|-+.+-|++|..+   +.+.+.+.               .. 
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            88887764 556677888888886522  2233334445556666666543   22221111               10 


Q ss_pred             -HHHhh-----hhc---------cchHHHHHH--hchHHHHHHHhcCCCHH-HHHHHHHHHHHHh-cChhhHHHHHhcCc
Q 006669          499 -ALFNL-----CIY---------MGNKGRAVR--AGIISALLKMLTDSRNC-MVDEALTILSVLA-SNPEAKIAIVKAST  559 (636)
Q Consensus       499 -aL~nL-----~~~---------~~n~~~lv~--~g~v~~Lv~lL~~~~~~-~~~~Al~~L~~La-~~~~~~~~i~~~g~  559 (636)
                       -+..|     +-.         +.|-..+.+  ..++..|.++++..++. ....|+.=+..+. ..|+++..+...|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence             01111     111         124445554  34888899999775444 3344555555544 47999999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          560 IPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       560 i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      =..+.+++.++++++|=.|..++..+.
T Consensus       401 k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         401 KEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            999999999999999999998886544

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.72  E-value=1.8  Score=45.56  Aligned_cols=185  Identities=21%  Similarity=0.247  Sum_probs=102.7

Q ss_pred             hhcCCChHHHHHHHHHHHHhhhCcchHHHHHH--hCChHHHHHHHhcCcHHHHHHHHHHHHHccCC---CchhHHHHhcC
Q 006669          402 LLTTDDVMTQEHAVTAILNLSIYENNKGLIML--AGAIPSIVQILRAGSMEARENAAATLFSLSLL---DENKIIIGASG  476 (636)
Q Consensus       402 lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~--~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~~~g  476 (636)
                      .+.......++.++..+.++....-....+.+  ...+..+.+.++.|..+-+.-|+.++.-++..   .+....+.+ .
T Consensus        51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~  129 (309)
T PF05004_consen   51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-E  129 (309)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-H
Confidence            34444566677777777666543222233322  34567778888888766666676666665544   122333333 4


Q ss_pred             chHHHHhhhccCC--HHHHHHHHHHHHhhhhccch-HHHHHH-hchHHHHHH--HhcC----------CCHHHHHHHHHH
Q 006669          477 AIPALVDLLQNGS--TRGRKDAATALFNLCIYMGN-KGRAVR-AGIISALLK--MLTD----------SRNCMVDEALTI  540 (636)
Q Consensus       477 ~i~~Lv~LL~~~~--~~~k~~A~~aL~nL~~~~~n-~~~lv~-~g~v~~Lv~--lL~~----------~~~~~~~~Al~~  540 (636)
                      ..|.|...+.+++  +..+..++.+|.-++....+ -..+.+ ...+..+..  ....          +++.+...|+..
T Consensus       130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a  209 (309)
T PF05004_consen  130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA  209 (309)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence            6778888888764  34445555566555432211 111110 112221111  1211          124577777776


Q ss_pred             HHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          541 LSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       541 L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      -..|... +...-.-.-...+|.|+.+|.+.+..+|-.|..+|.-|..
T Consensus       210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            6666653 3322221123569999999999999999988877776654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.71  E-value=0.023  Score=58.04  Aligned_cols=52  Identities=21%  Similarity=0.451  Sum_probs=42.9

Q ss_pred             CCCCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          252 LIIPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      ...|+.=.||+|++--.+|.++ .+|-.||-.||-++.. ++..||+|+.+..-
T Consensus       295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v  347 (357)
T KOG0826|consen  295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV  347 (357)
T ss_pred             cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence            3456778999999988777665 4599999999999998 68899999887643

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=94.71  E-value=0.032  Score=55.42  Aligned_cols=47  Identities=26%  Similarity=0.335  Sum_probs=38.5

Q ss_pred             CCcccCccchhhccCCee-cCCCchhhhHHHHHHHcC-CCCCCCCCCcc
Q 006669          255 PADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDC-GNVTCPKTQQK  301 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~  301 (636)
                      --+++||||......||+ ..|||.|+|..|+....- -...||+-+-.
T Consensus       174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            457899999999999998 789999999999999853 23459976543

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.69  E-value=0.018  Score=61.17  Aligned_cols=48  Identities=21%  Similarity=0.455  Sum_probs=39.4

Q ss_pred             CCCCcccCccchhhccCCe----ecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          253 IIPADFLCPISLELMRDPV----IVATGQTYERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv----~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      +..+-.+||||++=|.+-|    ++.|.|+|-=+|+++|++   .+||+||-...
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            4445679999999996544    689999999999999985   68999986555

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.66  E-value=2.5  Score=47.98  Aligned_cols=222  Identities=17%  Similarity=0.138  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-C-cchHHHHHHh-CChHHHHHH
Q 006669          367 EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-Y-ENNKGLIMLA-GAIPSIVQI  443 (636)
Q Consensus       367 ~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~-~~~k~~I~~~-G~I~~Lv~l  443 (636)
                      .++.+|+-+|-.|-+.+++.   +--.+....++.+|...+-.+...+...+.-|++ . +..+..+..+ +-+..++..
T Consensus       163 ~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~  239 (938)
T KOG1077|consen  163 YVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVV  239 (938)
T ss_pred             HHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhh
Confidence            34555555555555555542   2223567889999987777777777777777777 3 3334333221 111111111


Q ss_pred             Hh----------cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCC-------HHHHHHHHHHHHhhhhc
Q 006669          444 LR----------AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGS-------TRGRKDAATALFNLCIY  506 (636)
Q Consensus       444 L~----------~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~-------~~~k~~A~~aL~nL~~~  506 (636)
                      -.          -+.|=.+...+++|.+.-..++.-....-...+..++...++..       ..++-..+.-..+|..+
T Consensus       240 ~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h  319 (938)
T KOG1077|consen  240 VGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIH  319 (938)
T ss_pred             cccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHH
Confidence            10          02344666778888877433333222222234444444444221       11222223333345544


Q ss_pred             c-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Q 006669          507 M-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLS  584 (636)
Q Consensus       507 ~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~  584 (636)
                      - +....+.+  ++..|-++|.+.+..++-.|+..+..|+++.....++...  ...++..|+ ..+-.+++.|+..|..
T Consensus       320 ~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~  395 (938)
T KOG1077|consen  320 LDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYA  395 (938)
T ss_pred             cCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHH
Confidence            3 34444443  6888999999888899999999999999987766666544  677778888 4567899999999999


Q ss_pred             hhccChHHHHHHH
Q 006669          585 LCKRDTENLACIS  597 (636)
Q Consensus       585 L~~~~~~~~~~i~  597 (636)
                      +|-  .++...++
T Consensus       396 mcD--~~Nak~IV  406 (938)
T KOG1077|consen  396 MCD--VSNAKQIV  406 (938)
T ss_pred             Hhc--hhhHHHHH
Confidence            994  35555543

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=94.56  E-value=0.098  Score=48.62  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=74.2

Q ss_pred             ccchhhHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCChhhhhhHHHHHHHHHHHHHHHHhcccCCCCcchhhchhHH
Q 006669           35 GVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKI  114 (636)
Q Consensus        35 ~~~rk~~~~l~rr~~ll~~l~eel~~~~~~~~~~~~~~~~~~~~~~l~eL~~al~~ak~Ll~~~~c~~~Sk~~l~~~~~v  114 (636)
                      ..+|.-+.++..-+.-+.|+++||...+       ..+ +.....-+++|...|++++.|++.  |.+.++.-+++....
T Consensus        30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~-------~el-d~~~~ee~e~L~~~L~~g~~LV~k--~sk~~r~n~~kk~~y   99 (147)
T PF05659_consen   30 LSFKSILKRLESTLESIIPIIKEIDKLN-------VEL-DRPRQEEIERLKELLEKGKELVEK--CSKVRRWNLYKKPRY   99 (147)
T ss_pred             HhhhhHHHHHHHHHHHhhhHHHHHHHHh-------hhc-CCchhHHHHHHHHHHHHHHHHHHH--hccccHHHHHhhHhH
Confidence            4557777888889999999999998764       222 334477889999999999999999  998887745577779


Q ss_pred             HHHHHHHHHHHHHHhc-CCCCC
Q 006669          115 SFQFQCVMWKLEKALG-NIPYD  135 (636)
Q Consensus       115 ~~~~~~~~~~~~~~L~-~lp~~  135 (636)
                      ..+++++-.+|...++ .+|+.
T Consensus       100 ~~Ki~~le~~l~~f~~v~~q~~  121 (147)
T PF05659_consen  100 ARKIEELEESLRRFIQVDLQLH  121 (147)
T ss_pred             HHHHHHHHHHHHHHhcchhHHH
Confidence            9999999999999997 46763

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.55  E-value=0.1  Score=46.36  Aligned_cols=73  Identities=21%  Similarity=0.290  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 006669          350 DVVAIEALVRKLS-SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLS  422 (636)
Q Consensus       350 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs  422 (636)
                      +...+..|++.|. +.++....-|+..|..+++..|..|..+.+.|+-..++.++.++|++++.+|+.++-.|.
T Consensus        41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3457899999994 446666777889999999999999999988999999999999999999999999886553

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=94.54  E-value=0.022  Score=58.99  Aligned_cols=47  Identities=21%  Similarity=0.530  Sum_probs=39.7

Q ss_pred             CCcccCccchhhccC-------------CeecCCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669          255 PADFLCPISLELMRD-------------PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL  302 (636)
Q Consensus       255 p~~f~CPis~~~m~d-------------Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l  302 (636)
                      -+|=.|-||++-|-.             |--+||||.+--+|...|+++ ..|||+|+.++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            456779999998633             357999999999999999985 68999999984

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.32  Score=54.50  Aligned_cols=219  Identities=18%  Similarity=0.114  Sum_probs=129.1

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC------c-hhH
Q 006669          398 VLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD------E-NKI  470 (636)
Q Consensus       398 ~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~------~-~~~  470 (636)
                      .|..+....|..++.+|+..|+.|+..-....     -.....++.++..+..+|..|...++-.+...      + +..
T Consensus       202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  202 GLIYLEHDQDFRVRTHAVEGLLALSEGFKLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhcccccccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            37777778899999999999999876222212     23456678888888889988877766554322      1 111


Q ss_pred             HHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHH------
Q 006669          471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVL------  544 (636)
Q Consensus       471 ~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L------  544 (636)
                      .+. ..++..+.+.+++.+..++..|+.+|..+-...+   .++..-.=..++.-++. .....+..-....+-      
T Consensus       277 kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRR-kr~ahkrpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  277 KLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRR-KRTAHKRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhh-hhhcccchHHHHhcCCcccCc
Confidence            111 2467777888888888888899998887743221   11111111112221110 000111111111111      


Q ss_pred             ---hc-----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHH
Q 006669          545 ---AS-----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERA  616 (636)
Q Consensus       545 ---a~-----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~  616 (636)
                         +.     ..+....|+..|+-..+|.=|...--++|.+|+..+..|+.+.|......     +.-|+.++.+.-..+
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFNDEIEVV  426 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhccHHHHH
Confidence               00     11122345566666666665555556788888888888888777655443     456777777777777


Q ss_pred             HHHHHHHHHHhhccc
Q 006669          617 KRKATSLLEHLRKLP  631 (636)
Q Consensus       617 k~kA~~lL~~l~~~~  631 (636)
                      |.+|...|+.|..+-
T Consensus       427 RL~ai~aL~~Is~~l  441 (823)
T KOG2259|consen  427 RLKAIFALTMISVHL  441 (823)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            788887777776553

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.38  E-value=0.23  Score=48.38  Aligned_cols=120  Identities=17%  Similarity=0.179  Sum_probs=86.4

Q ss_pred             ChHHHHHHHHHHHHhhhCcchHHHHHH----------------hCChHHHHHHHhcC------cHHHHHHHHHHHHHccC
Q 006669          407 DVMTQEHAVTAILNLSIYENNKGLIML----------------AGAIPSIVQILRAG------SMEARENAAATLFSLSL  464 (636)
Q Consensus       407 d~~~~e~Av~aL~nLs~~~~~k~~I~~----------------~G~I~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~  464 (636)
                      +...-..++.+|.||+..+..+..+..                ...+..|++.+..|      ...-....+.+|.|+|.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            344556778888888887777665443                22577777776552      23455688899999999


Q ss_pred             CCchhHHHHhc--Cc--hHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHh---chHHHHHHHh
Q 006669          465 LDENKIIIGAS--GA--IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRA---GIISALLKML  526 (636)
Q Consensus       465 ~~~~~~~i~~~--g~--i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~---g~v~~Lv~lL  526 (636)
                      ..+.|..+...  +.  +..|+..+...+..-+.-++.+|.|.|...+....+...   +++|.|+--|
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence            99999998876  34  667777777777777788899999999999888888763   4455444444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.34  E-value=8.2  Score=45.67  Aligned_cols=214  Identities=16%  Similarity=0.159  Sum_probs=122.5

Q ss_pred             CCHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc----CCC----hHHHHHHH
Q 006669          349 GDVVAIEALVRKLSS-----RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT----TDD----VMTQEHAV  415 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s-----~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~----s~d----~~~~e~Av  415 (636)
                      .+.+++..++..+.+     +..+.....++.|+..++ -..||..+.+.|+++.|+..|.    .+.    +.+-+.-+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            344567777777764     233344455666666676 4789999999999999998774    333    45555555


Q ss_pred             HHHHHhhhCcchHHHH-----HHhC-----C---hHHHHHHHhcC----cHHHHHHHHHHHHHccCCCchhHHHHhcCch
Q 006669          416 TAILNLSIYENNKGLI-----MLAG-----A---IPSIVQILRAG----SMEARENAAATLFSLSLLDENKIIIGASGAI  478 (636)
Q Consensus       416 ~aL~nLs~~~~~k~~I-----~~~G-----~---I~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i  478 (636)
                      .++.-|.........-     ....     .   +..+++.+.+.    ++.+....+++|-+|+..++.+....-. .+
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F  271 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HF  271 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HH
Confidence            5554443311110000     1111     2   55566666543    5788899999999999887655443221 22


Q ss_pred             HHHHhhhcc--C---CHHHHHHHHHHHHhhh----hcc---chHHHHHHhchHHHHHHHhcC--------CCHHHH----
Q 006669          479 PALVDLLQN--G---STRGRKDAATALFNLC----IYM---GNKGRAVRAGIISALLKMLTD--------SRNCMV----  534 (636)
Q Consensus       479 ~~Lv~LL~~--~---~~~~k~~A~~aL~nL~----~~~---~n~~~lv~~g~v~~Lv~lL~~--------~~~~~~----  534 (636)
                      .+.+++=+-  .   +....   +..+..++    .+.   .-|..+++.|++...++.|..        .+++++    
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             HHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence            332232111  1   11222   33333332    222   127889999999988888754        233333    


Q ss_pred             ----HHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc
Q 006669          535 ----DEALTILSVLASNPEAKIAIVKASTIPVLIVLLR  568 (636)
Q Consensus       535 ----~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~  568 (636)
                          ..++..|.-||.....-+.+...+++ +++.-|.
T Consensus       349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE  385 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE  385 (802)
T ss_pred             CCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh
Confidence                35788888888865544444556667 4445554

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.27  E-value=0.021  Score=54.02  Aligned_cols=45  Identities=20%  Similarity=0.313  Sum_probs=37.9

Q ss_pred             cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669          257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL  302 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l  302 (636)
                      .|.|-||.+-++.||+..|||+||-.|-.+-+.. ..+|-+|+...
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence            4999999999999999999999999997766654 46788887643

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.17  E-value=0.021  Score=57.62  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=40.4

Q ss_pred             CcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      =.|-|-||.+.+.+||+..|||+||-.|--+.+.. ...|++|.+...
T Consensus       240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~  286 (313)
T KOG1813|consen  240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH  286 (313)
T ss_pred             CCccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence            35889999999999999999999999998877764 477999987653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=94.11  E-value=3.2  Score=41.97  Aligned_cols=91  Identities=24%  Similarity=0.283  Sum_probs=66.3

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhccChHHHHH
Q 006669          518 IISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT--GLPRNKENAAAILLSLCKRDTENLAC  595 (636)
Q Consensus       518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~  595 (636)
                      +|..|++-+..++.-.+-.+..++..|-+          .-.||.|.+.|..  ..|.+|..|+.+|..++..       
T Consensus       188 aI~al~~~l~~~SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-------  250 (289)
T KOG0567|consen  188 AINALIDGLADDSALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-------  250 (289)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-------
Confidence            55666666666666666666666665543          2468899888865  4689999999999888742       


Q ss_pred             HHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          596 ISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       596 i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                          ..++.|.+++.+..+-+++.+..+|.++..
T Consensus       251 ----~~~~vL~e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  251 ----DCVEVLKEYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             ----HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence                256677788888888888888888887643

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.02  E-value=1.1  Score=49.53  Aligned_cols=153  Identities=19%  Similarity=0.165  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCH----HHHHHHHHHHHhhhhccchHHHH
Q 006669          438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGST----RGRKDAATALFNLCIYMGNKGRA  513 (636)
Q Consensus       438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~----~~k~~A~~aL~nL~~~~~n~~~l  513 (636)
                      ..+++++.+|++..+..|...|.+++.+......+.+..++..|..++.+|..    ......+.++..|--+.-.-...
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~  165 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES  165 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence            45678888999999999999999999999988888888999999999998854    34444555555543222111112


Q ss_pred             HHhchHHHHHHHh--cCCCHHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669          514 VRAGIISALLKML--TDSRNCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       514 v~~g~v~~Lv~lL--~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                      +...+|.....+.  ...+..+...|+..|.++..+.. -+..+.+.--+..|+..++.++.....+|.+.|-.+....+
T Consensus       166 ~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~  245 (713)
T KOG2999|consen  166 VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAP  245 (713)
T ss_pred             cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCC
Confidence            2222333333333  22455667789999998887655 56677777789999999998888888888888887765544

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.97  E-value=3.2  Score=45.16  Aligned_cols=185  Identities=19%  Similarity=0.250  Sum_probs=119.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccC---hhhHHHHHhcCCHHHHHHhhcCCC-------hHHHHHHHHHHHHhhhCcc
Q 006669          357 LVRKLSSRSVEERRAAVAEIRSLSKRS---TDNRIIIADAGAIPVLVNLLTTDD-------VMTQEHAVTAILNLSIYEN  426 (636)
Q Consensus       357 Lv~~L~s~~~~~~~~Al~~L~~La~~~---~~~r~~i~e~g~i~~Lv~lL~s~d-------~~~~e~Av~aL~nLs~~~~  426 (636)
                      +..+++..+.++|..|+--...+.|.+   ..+|+.+.++-+.+.+-++|.+.+       .-.+.-++++|.-.+..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            566667777888888888888888754   456888999988899999997633       2345567777877777665


Q ss_pred             h--HHHHHHhCChHHHHHHHhcC-cHH------HHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc--cCCHHHHHH
Q 006669          427 N--KGLIMLAGAIPSIVQILRAG-SME------ARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ--NGSTRGRKD  495 (636)
Q Consensus       427 ~--k~~I~~~G~I~~Lv~lL~~~-~~e------~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~--~~~~~~k~~  495 (636)
                      .  ...|+  ..||.|.+++..+ +++      ..+.+-.+|..++..+.....+...|+++.+.++-.  ++.. ...-
T Consensus        96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~-d~al  172 (698)
T KOG2611|consen   96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSH-DMAL  172 (698)
T ss_pred             hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCch-hHHH
Confidence            4  23343  4689999999764 333      677888999999998888888888999999986532  2221 1112


Q ss_pred             HHHHHHh----hhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          496 AATALFN----LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       496 A~~aL~n----L~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                      ++..+.-    +-...+.-.++..  .|..+..-+...+...+-+.+.+|..+-.
T Consensus       173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            2222221    1122233333332  24444444444566677788888875433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=93.96  E-value=0.26  Score=55.73  Aligned_cols=148  Identities=14%  Similarity=0.115  Sum_probs=94.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhhCcchH---HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHHH
Q 006669          397 PVLVNLLTTDDVMTQEHAVTAILNLSIYENNK---GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKIII  472 (636)
Q Consensus       397 ~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k---~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i  472 (636)
                      ..+++.|++..+.++.+|+..+..++.--.++   ..+...|.  .|.+-|....+|+.-.-+.++..+..... .+..=
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~p  879 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP  879 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence            34456677888899999998888887632222   12222332  34455656677776555555554432221 11111


Q ss_pred             HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                      =-.+.+|.|.-+|++.+..++.+....+..++...+......+ ..+---|+++|...+.+++..|...+..++.
T Consensus       880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            1237889999999999999999999999999876544222222 2345568888888888888888776666654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=93.94  E-value=1.3  Score=51.52  Aligned_cols=168  Identities=17%  Similarity=0.151  Sum_probs=119.1

Q ss_pred             HhcCcHHHHHHHHH-HHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHH
Q 006669          444 LRAGSMEARENAAA-TLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISAL  522 (636)
Q Consensus       444 L~~~~~e~~~~Aa~-~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~L  522 (636)
                      +.+++...+..|+. ++..++..++-      .-.++.++..+...+.+.|+..---|.+....++....+    ++..+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti   97 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI   97 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence            44455555555553 44444443331      123455566656667888887766676766666643333    67788


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCCh
Q 006669          523 LKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAV  602 (636)
Q Consensus       523 v~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i  602 (636)
                      .+=+.++++.++-.|+..|..|=..     ++. ...++++.+++.++++.+|..|+-++..+-.-+++   ...+.|.+
T Consensus        98 ~kDl~d~N~~iR~~AlR~ls~l~~~-----el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~  168 (757)
T COG5096          98 QKDLQDPNEEIRGFALRTLSLLRVK-----ELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLI  168 (757)
T ss_pred             HhhccCCCHHHHHHHHHHHHhcChH-----HHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHH
Confidence            8888889999999999888765331     121 24678889999999999999999999998875544   34567889


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          603 IPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       603 ~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      ..+..++.+.+|.+...|...|..++..
T Consensus       169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         169 DILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            9999999999999999999999988754

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.93  E-value=0.05  Score=54.42  Aligned_cols=50  Identities=24%  Similarity=0.314  Sum_probs=40.9

Q ss_pred             CCCcccCccchhhccCCeecC-CCchhhhHHHHHHHc-CCCCCCCCCCcccc
Q 006669          254 IPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWID-CGNVTCPKTQQKLE  303 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~-~~~~~cP~~~~~l~  303 (636)
                      -..+-.||+|++.-+-|-++. |||.||.-||..-+. ....+||.|+..-.
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            356778999999999998765 999999999988764 23579999987654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=93.62  E-value=1.6  Score=50.96  Aligned_cols=261  Identities=16%  Similarity=0.160  Sum_probs=137.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHH
Q 006669          356 ALVRKLSSRSVEERRAAVAEIRS-LSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIML  433 (636)
Q Consensus       356 ~Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~  433 (636)
                      .|++.+.+++.+.|.-|...|-. |-+. .-+-..=.+...+..|+++|...+.++|..|+.+|.-|+. -++.+     
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~-----   82 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ-----   82 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH-----
Confidence            68888999998888888776543 2221 1111111123467889999999999999999999998874 22211     


Q ss_pred             hCChHHHHHHHh----cCcHHHHHHHH-HHHHHccCCCchhHHHHhcCchHHHHhhhccC------CHHHHHHHHHHHHh
Q 006669          434 AGAIPSIVQILR----AGSMEARENAA-ATLFSLSLLDENKIIIGASGAIPALVDLLQNG------STRGRKDAATALFN  502 (636)
Q Consensus       434 ~G~I~~Lv~lL~----~~~~e~~~~Aa-~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~------~~~~k~~A~~aL~n  502 (636)
                         +..+|+-|.    +|....+.-+. .....++..............++.+...|..+      ...++-.++..+..
T Consensus        83 ---le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d  159 (1233)
T KOG1824|consen   83 ---LETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILAD  159 (1233)
T ss_pred             ---HHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHH
Confidence               223333332    33222222222 22222222221111111223333333333322      22355555555544


Q ss_pred             hhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHH
Q 006669          503 LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT-GLPRNKENAAAI  581 (636)
Q Consensus       503 L~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~  581 (636)
                      +...-+.---=...++...++.-+.+....++..|+.+|..|+....+ ...  .+.+..|++=|.. ..+....--+.+
T Consensus       160 ~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~-~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~  236 (1233)
T KOG1824|consen  160 VLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR-DLY--VELIEHLLKGLSNRTQMSATRTYIQC  236 (1233)
T ss_pred             HHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH-HHH--HHHHHHHHhccCCCCchHHHHHHHHH
Confidence            332221110003456777777777777888999999999999884321 111  1234444433332 223333333445


Q ss_pred             HHHhhccChHHHHHHHHcCChHHHHHhh---hcCCHHHHHHHHHHHHHhhc
Q 006669          582 LLSLCKRDTENLACISRLGAVIPLTELT---KSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll---~~g~~~~k~kA~~lL~~l~~  629 (636)
                      |..+|...+.....- -...++.+....   +..++..+++...++..+-+
T Consensus       237 l~~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~  286 (1233)
T KOG1824|consen  237 LAAICRQAGHRFGSH-LDKIVPLVADYCNKIEEDDDELREYCLQALESFLR  286 (1233)
T ss_pred             HHHHHHHhcchhhcc-cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            555555332211110 123567777777   67889999999999986643

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.58  E-value=4.6  Score=46.55  Aligned_cols=208  Identities=18%  Similarity=0.151  Sum_probs=133.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML  433 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~  433 (636)
                      -..|.++|.+.....+..|.+.|-.+.....+.      ....|.+|+-..+.+.+++.-.---|+..+....+-..+  
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--  108 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--  108 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence            345788898888888889988666554333332      234678899888999998887766666666543332221  


Q ss_pred             hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch-HHH
Q 006669          434 AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN-KGR  512 (636)
Q Consensus       434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n-~~~  512 (636)
                        -|..+-+-|+.+++.+|..|+++|.++=      .-+...=.+-++-+...+.++.+++.|+.||-.|-.-+.+ +..
T Consensus       109 --SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q  180 (968)
T KOG1060|consen  109 --SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ  180 (968)
T ss_pred             --eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence              2566667788999999999988887762      2222111222333445567899999999999998655543 444


Q ss_pred             HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       513 lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      +     +..+-.+|.+.++.++-.|+.+...+|-  +.-..|.  +-...|..+|...+...|-..+..|..-|
T Consensus       181 L-----~e~I~~LLaD~splVvgsAv~AF~evCP--erldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYA  245 (968)
T KOG1060|consen  181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYA  245 (968)
T ss_pred             H-----HHHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence            3     3445566788888888888888877764  2222221  23455566665555555555555555444

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=93.52  E-value=4.9  Score=42.29  Aligned_cols=187  Identities=19%  Similarity=0.178  Sum_probs=105.7

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhhc---cchHHHH
Q 006669          439 SIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCIY---MGNKGRA  513 (636)
Q Consensus       439 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~---~~n~~~l  513 (636)
                      ..+..+.......|+.+...+..+.........+...  ..+..+...++.|..+-+..|+.++.-|+..   .+....+
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            3344455556778888888877765443333333322  4677778888888776677777777777655   2344555


Q ss_pred             HHhchHHHHHHHhcCCC--HHHHHHHHHHHHHHhc---C-hhhHHHHHhcCcHHHHHH--HHcC-C---------CHHHH
Q 006669          514 VRAGIISALLKMLTDSR--NCMVDEALTILSVLAS---N-PEAKIAIVKASTIPVLIV--LLRT-G---------LPRNK  575 (636)
Q Consensus       514 v~~g~v~~Lv~lL~~~~--~~~~~~Al~~L~~La~---~-~~~~~~i~~~g~i~~Lv~--lL~~-~---------s~~~k  575 (636)
                      .+ ...|.|...+.+.+  ...+..++.+|+.++.   . ++......+  .+..+..  .++. +         ++.+.
T Consensus       127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            54 47888999987754  3444555556665544   2 222221111  1221111  1121 1         13344


Q ss_pred             HHHHHHHHHhhcc-ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          576 ENAAAILLSLCKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       576 e~A~~~L~~L~~~-~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ..|+..-.-|... +........ ...++.|..++.+.+..+|-.|...|-.|.+
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4443222222222 222233322 3468999999999999999999999988754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.48  E-value=0.56  Score=53.58  Aligned_cols=108  Identities=16%  Similarity=0.172  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL  430 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~  430 (636)
                      ..++..++....++++..+..|++.+..+--..  --.     -...+|.+.++++++.++..|+....++-  ..+...
T Consensus        85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~--i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~  155 (734)
T KOG1061|consen   85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK--ITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDL  155 (734)
T ss_pred             HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH--HHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhh
Confidence            346778888888889998888877666554311  111     23578899999999999998887777764  344566


Q ss_pred             HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc
Q 006669          431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE  467 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~  467 (636)
                      ....|.++.|..++.+.++.+..+|.++|..+...+.
T Consensus       156 ~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  156 VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence            6678999999999998899999999999999976554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.45  E-value=2.2  Score=49.07  Aligned_cols=242  Identities=14%  Similarity=0.068  Sum_probs=153.7

Q ss_pred             ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHH-HhhhCcchHHHHHHhCChHHHHHHHhcCc-HHHHHHHHHHHH
Q 006669          383 STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAIL-NLSIYENNKGLIMLAGAIPSIVQILRAGS-MEARENAAATLF  460 (636)
Q Consensus       383 ~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~-nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~  460 (636)
                      ...-|...+..|+...|+++..........++..+|. .++. +..+    ....++++...+.+.. .-..-.++.++.
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGER----SYEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            3444566677899999999888777777777777776 2221 1111    0123444444443321 122345778889


Q ss_pred             HccCCCc-hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH-HHHH-hchHHHHHHHhcCCCHHHHHHH
Q 006669          461 SLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG-RAVR-AGIISALLKMLTDSRNCMVDEA  537 (636)
Q Consensus       461 ~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~-~lv~-~g~v~~Lv~lL~~~~~~~~~~A  537 (636)
                      ||++.++ .|..|.+.-+++.+-.++-+.++..+..++..+.||..++---. .+++ ...++.....+........-++
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            9987765 46667777666666666777788899999999999988765433 3344 3344545555544444555566


Q ss_pred             HHHHHHHhcChhh-HHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHH
Q 006669          538 LTILSVLASNPEA-KIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTER  615 (636)
Q Consensus       538 l~~L~~La~~~~~-~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~  615 (636)
                      ++++..+....++ ...+.+ ......++.++.++.+.++..-+.+.+++.....+....+.....+..+..+-.-.-..
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~  727 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP  727 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence            6677655554333 221333 46678888889999999999988888887766666666676666666666655444455


Q ss_pred             HHHHHHHHHHHhhc
Q 006669          616 AKRKATSLLEHLRK  629 (636)
Q Consensus       616 ~k~kA~~lL~~l~~  629 (636)
                      .++.|...|...-+
T Consensus       728 ~~~~~~~~l~~a~~  741 (748)
T KOG4151|consen  728 KREDAAPCLSAAEE  741 (748)
T ss_pred             hhhhhhhHHHHHHH
Confidence            56666666655544

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=93.36  E-value=0.1  Score=43.33  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=34.9

Q ss_pred             CcccCccchhhccC-C-eecCCCchhhhHHHHHHHcC--CCCCCCCCCcccc
Q 006669          256 ADFLCPISLELMRD-P-VIVATGQTYERSYIQRWIDC--GNVTCPKTQQKLE  303 (636)
Q Consensus       256 ~~f~CPis~~~m~d-P-v~~~~G~t~~r~~I~~w~~~--~~~~cP~~~~~l~  303 (636)
                      -+-.||.|.-.-.| | |.=.|||.|-..||.+|++.  ...+||.||++..
T Consensus        31 fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   31 FDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            33446655554434 4 44589999999999999985  3578999998764

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=93.36  E-value=0.037  Score=58.21  Aligned_cols=34  Identities=15%  Similarity=0.480  Sum_probs=30.1

Q ss_pred             CCcccCccchhhccCCeecCCCchhhhHHHHHHH
Q 006669          255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWI  288 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~  288 (636)
                      -+++.||||+..++||+++||||..||.|-..-.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence            3678999999999999999999999999976544

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.28  E-value=7.5  Score=44.36  Aligned_cols=262  Identities=15%  Similarity=0.121  Sum_probs=140.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC--hHHHHHHHHHHHHhhh-CcchHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD--VMTQEHAVTAILNLSI-YENNKG  429 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d--~~~~e~Av~aL~nLs~-~~~~k~  429 (636)
                      .+..+-+.|.+.++....-|+.++.++..  .+++..+.  .-|+   ++|-+++  .-++..|+-+|+.|-. .++.  
T Consensus       112 vin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl--  182 (938)
T KOG1077|consen  112 VINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL--  182 (938)
T ss_pred             HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence            45566677788888888999999988864  34444443  2244   5665544  3456666666666655 3332  


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC--chhHHHHhc-CchHHHHhhhcc----------CCHHHHHHH
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD--ENKIIIGAS-GAIPALVDLLQN----------GSTRGRKDA  496 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~-g~i~~Lv~LL~~----------~~~~~k~~A  496 (636)
                       +-..+-...++++|.+.++.+...+...+..|+...  +++...... +-+..++..-..          ..|=.....
T Consensus       183 -~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl  261 (938)
T KOG1077|consen  183 -VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL  261 (938)
T ss_pred             -cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence             112345678888888777766666666666665432  233322211 111111111000          123344455


Q ss_pred             HHHHHhhhhcc--chHHHHHHhchHHHHHHHhcCC--C-----HHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH
Q 006669          497 ATALFNLCIYM--GNKGRAVRAGIISALLKMLTDS--R-----NCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL  567 (636)
Q Consensus       497 ~~aL~nL~~~~--~n~~~lv~~g~v~~Lv~lL~~~--~-----~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL  567 (636)
                      +++|.+.-...  +.|.++.+  ++..++....++  +     ...+...+.-.-+|+.+-+.-..+.. .++..|-++|
T Consensus       262 ~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fl  338 (938)
T KOG1077|consen  262 LRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFL  338 (938)
T ss_pred             HHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHh
Confidence            66666553222  23444443  334444444321  1     11122222233344444333222222 4567777777


Q ss_pred             cCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhcc
Q 006669          568 RTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK-SGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       568 ~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~~~  630 (636)
                      .+.....|=-|...+..||... .....+...  .+.+...++ ..+..++++|..+|-.|+..
T Consensus       339 s~rE~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~  399 (938)
T KOG1077|consen  339 SHRETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV  399 (938)
T ss_pred             hcccccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence            7777777777888887777652 222233322  555555565 46777788888888877753

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.25  E-value=5  Score=38.45  Aligned_cols=92  Identities=20%  Similarity=0.243  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCC-hHHHHHH
Q 006669          365 SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGA-IPSIVQI  443 (636)
Q Consensus       365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~-I~~Lv~l  443 (636)
                      ++.+|..++..+..|+...+.    +++ ..+|.+...|+++++.++..|+.+|..|...+-.|.    .|- +..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~----~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN----LVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH----HHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence            467788899999998875542    222 357899999999999999999999999976433222    233 3777788


Q ss_pred             HhcCcHHHHHHHHHHHHHccCC
Q 006669          444 LRAGSMEARENAAATLFSLSLL  465 (636)
Q Consensus       444 L~~~~~e~~~~Aa~~L~~Ls~~  465 (636)
                      +.+.+++++..|..++..++..
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            8888999999999999998765

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.18  E-value=2.5  Score=48.66  Aligned_cols=98  Identities=11%  Similarity=0.061  Sum_probs=63.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHH
Q 006669          355 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIML  433 (636)
Q Consensus       355 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~  433 (636)
                      ..|.+.|++++..++-.|+..|.+++.  ++-..     ...|.+.++|++.++.++..|+.++..+-. .++.-+.   
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~---  179 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH---  179 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH---
Confidence            455667778888888899999998874  33222     235777888999999999999888776654 3333222   


Q ss_pred             hCChHHHHHHHhcCcHHHHHHHHHHHHHccC
Q 006669          434 AGAIPSIVQILRAGSMEARENAAATLFSLSL  464 (636)
Q Consensus       434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~  464 (636)
                        +++....+|.+.+.-+...+...+..++.
T Consensus       180 --f~~~~~~lL~ek~hGVL~~~l~l~~e~c~  208 (866)
T KOG1062|consen  180 --FVIAFRKLLCEKHHGVLIAGLHLITELCK  208 (866)
T ss_pred             --hhHHHHHHHhhcCCceeeeHHHHHHHHHh
Confidence              24444555555555455455555555543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.97  E-value=1.2  Score=42.83  Aligned_cols=108  Identities=17%  Similarity=0.164  Sum_probs=75.1

Q ss_pred             chHHHHhhhccCCHHHHHHHHHHHHhhhhccch--HHHHHHhchHHHHHHHhcC---------CCHHHHHHHHHHHHHHh
Q 006669          477 AIPALVDLLQNGSTRGRKDAATALFNLCIYMGN--KGRAVRAGIISALLKMLTD---------SRNCMVDEALTILSVLA  545 (636)
Q Consensus       477 ~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n--~~~lv~~g~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La  545 (636)
                      ....+++.+++++...  ..+.-|.-...+.+.  -..+++.|++..|++.|..         .+......++.+|..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4455666666654322  222222221222222  4578889999999998853         23467778999999999


Q ss_pred             cChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          546 SNPEAKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       546 ~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      .+..|...+.+ .+++..|+..|.+.+..++..|+.+|..+|
T Consensus       145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            99999999887 578999999999999999999999999888

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.96  E-value=0.96  Score=38.93  Aligned_cols=91  Identities=19%  Similarity=0.135  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcCC
Q 006669          493 RKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRTG  570 (636)
Q Consensus       493 k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~  570 (636)
                      ++-++.+|...+..-+....-.-.-++++++..+.+.+..++..|+.+|.|++....  ..+..  ...+..|.+++...
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence            444556666655443333222235589999999999999999999999999997543  33333  35677788888777


Q ss_pred             CHHHHHHHHHHHHHhh
Q 006669          571 LPRNKENAAAILLSLC  586 (636)
Q Consensus       571 s~~~ke~A~~~L~~L~  586 (636)
                      ++.+|..| ..|-++.
T Consensus        81 d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   81 DENVRSAA-ELLDRLL   95 (97)
T ss_pred             chhHHHHH-HHHHHHh
Confidence            77777554 6665543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.73  E-value=17  Score=39.38  Aligned_cols=95  Identities=16%  Similarity=0.221  Sum_probs=73.1

Q ss_pred             hCChHHHHHHHhcC---cHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhc-cC---CHHHHHHHHHHHHhhhh
Q 006669          434 AGAIPSIVQILRAG---SMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQ-NG---STRGRKDAATALFNLCI  505 (636)
Q Consensus       434 ~G~I~~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~-~~---~~~~k~~A~~aL~nL~~  505 (636)
                      ...+..|..++++.   .+.+-..|+.++..+..++.. -..+.+.|.++.+++-+. .+   +.++....-.+|..||.
T Consensus       105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            34455666777765   366778888888888776654 455666799999999888 54   45666666678888999


Q ss_pred             ccchHHHHHHhchHHHHHHHhcC
Q 006669          506 YMGNKGRAVRAGIISALLKMLTD  528 (636)
Q Consensus       506 ~~~n~~~lv~~g~v~~Lv~lL~~  528 (636)
                      +..+...+.+.+.++.+++++.+
T Consensus       185 N~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  185 NNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             CHHHHHHHHhcChHHHHHHHhCC
Confidence            99999999999999999999865

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=92.73  E-value=1.2  Score=45.18  Aligned_cols=93  Identities=13%  Similarity=0.211  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhc
Q 006669          369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRA  446 (636)
Q Consensus       369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~  446 (636)
                      ...|+..|.-++--++..|..+.+..++..|+.+|. +..+.++..++.+|..+.. ++.|...+-+.+|+..++.++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            455778888888888999999999999999999994 4668889999988877655 88999989899999999999987


Q ss_pred             C--cHHHHHHHHHHHHH
Q 006669          447 G--SMEARENAAATLFS  461 (636)
Q Consensus       447 ~--~~e~~~~Aa~~L~~  461 (636)
                      .  +.+++...+..|.-
T Consensus       188 ~~~~~~~r~K~~EFL~f  204 (257)
T PF08045_consen  188 KSTDRELRLKCIEFLYF  204 (257)
T ss_pred             ccccHHHhHHHHHHHHH
Confidence            5  46777777766553

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.62  E-value=0.52  Score=38.25  Aligned_cols=66  Identities=12%  Similarity=0.069  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcC
Q 006669          493 RKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKAS  558 (636)
Q Consensus       493 k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g  558 (636)
                      .|.|++|+.|++..+.+...+.+.++|+.++++... +...++-.|..+|..++...++.+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            578999999999988888888888999999999864 677888899999999999999998887655

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.51  E-value=0.85  Score=39.25  Aligned_cols=70  Identities=16%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      ..+++++..+...++++|..|+..|.+++...++.... --..+.+.|.+++.+.++++|..|..+-+.|.
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            46888999998899999999999999999754332211 12457889999999999999988877666653

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.33  E-value=0.094  Score=55.33  Aligned_cols=41  Identities=27%  Similarity=0.673  Sum_probs=36.9

Q ss_pred             ccCccchhhccC---CeecCCCchhhhHHHHHHHcCCC--CCCCCC
Q 006669          258 FLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGN--VTCPKT  298 (636)
Q Consensus       258 f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~--~~cP~~  298 (636)
                      |.|||..+-=+|   |+.++|||..++.+|.+-..+|.  ..||=|
T Consensus       335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC  380 (394)
T KOG2817|consen  335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC  380 (394)
T ss_pred             eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence            899999998877   99999999999999999998877  568876

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=92.33  E-value=1  Score=45.52  Aligned_cols=146  Identities=17%  Similarity=0.127  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC-----hHHHHHHHHHHHHhhh--CcchHHHHHHhCChHHHH
Q 006669          369 RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD-----VMTQEHAVTAILNLSI--YENNKGLIMLAGAIPSIV  441 (636)
Q Consensus       369 ~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d-----~~~~e~Av~aL~nLs~--~~~~k~~I~~~G~I~~Lv  441 (636)
                      ...|+..+..+|. +++.|..+.++...-.|..+|...+     ...+-.++.++..|.+  +.+.-..+...+.+|..+
T Consensus        67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            3456677777786 6889999999987777888886533     3466778888888888  334466667789999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--------CchHHHHh-hhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669          442 QILRAGSMEARENAAATLFSLSLLDENKIIIGAS--------GAIPALVD-LLQNGSTRGRKDAATALFNLCIYMGNKGR  512 (636)
Q Consensus       442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--------g~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~~~~n~~~  512 (636)
                      +.+..|+.-.+.-|.-++..+-.++..-..+.+.        ..+..+|. +..+.+++.-+...++-..|+.++..+..
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a  225 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA  225 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence            9999999889999999999887777655544432        23333333 33456889999999999999988877766


Q ss_pred             HHH
Q 006669          513 AVR  515 (636)
Q Consensus       513 lv~  515 (636)
                      +..
T Consensus       226 L~~  228 (262)
T PF04078_consen  226 LRQ  228 (262)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.32  E-value=5.1  Score=43.16  Aligned_cols=246  Identities=19%  Similarity=0.168  Sum_probs=135.1

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CC-hHHHHHHHHHHHHhhhCcchH
Q 006669          352 VAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DD-VMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       352 ~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d-~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      +.+..+++.|.+ .+...|+.++-.|..-+. ++.-|..+...|.+..+++.+.. .+ +..-..++.++.-|+.+..+-
T Consensus        21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~   99 (361)
T PF07814_consen   21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM   99 (361)
T ss_pred             HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence            458888888873 345667778777777775 67889999999999999999953 33 333344445555555554444


Q ss_pred             HHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc---------CCHHHHHHHHH
Q 006669          429 GLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN---------GSTRGRKDAAT  498 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~---------~~~~~k~~A~~  498 (636)
                      ..+...+.+..++.+++.. ........-      .....+-.++.+ ..+..+.+++..         .....+..|+.
T Consensus       100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall  172 (361)
T PF07814_consen  100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALL  172 (361)
T ss_pred             hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHH
Confidence            4444556666667777611 000000000      000000001110 111111111110         11223444555


Q ss_pred             HHHhhh------------h--ccc-hHHHHHHhchHHHHHHHhcC----C------------CHHHHHHHHHHHHHHhc-
Q 006669          499 ALFNLC------------I--YMG-NKGRAVRAGIISALLKMLTD----S------------RNCMVDEALTILSVLAS-  546 (636)
Q Consensus       499 aL~nL~------------~--~~~-n~~~lv~~g~v~~Lv~lL~~----~------------~~~~~~~Al~~L~~La~-  546 (636)
                      +|..++            .  ..+ -|..+.+.|++..+++.+.+    .            +-...+.++.+|.+.+. 
T Consensus       173 ~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~  252 (361)
T PF07814_consen  173 ALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFL  252 (361)
T ss_pred             HHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhc
Confidence            555552            1  111 26677778899999998752    1            11245678888888776 


Q ss_pred             ChhhHHHHHh--cCcHHHHHHH-HcCC---CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHH
Q 006669          547 NPEAKIAIVK--ASTIPVLIVL-LRTG---LPRNKENAAAILLSLCKRDTENLACISRLGAVIPL  605 (636)
Q Consensus       547 ~~~~~~~i~~--~g~i~~Lv~l-L~~~---s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L  605 (636)
                      +.+++.....  .+.++.+... ++..   .+.....+++++.|++.+++..+..+...++...+
T Consensus       253 ~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~  317 (361)
T PF07814_consen  253 SEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQL  317 (361)
T ss_pred             CccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccch
Confidence            4455655544  2334444333 3322   23445688999999999998888877665444333

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.30  E-value=1.8  Score=47.85  Aligned_cols=151  Identities=15%  Similarity=0.155  Sum_probs=112.7

Q ss_pred             chHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCC----HHHHHHHHHHHHHHhcChhhHH
Q 006669          477 AIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSR----NCMVDEALTILSVLASNPEAKI  552 (636)
Q Consensus       477 ~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~----~~~~~~Al~~L~~La~~~~~~~  552 (636)
                      ....+.+++.+|+...+..|+.-|..|+....-...++....+..|..++.++.    ..+...++.++..+-.+.-.-=
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            445677888999999999999999999998888889999999999999997743    3455556666655544322111


Q ss_pred             HHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          553 AIVKASTIPVLIVLLRT--GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       553 ~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      ..+...+|.....+..-  ....+-..|+.+|-++..++......+.+.--++.|...++.++.+.+.+|..++..+
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            11222344455444432  2345567899999999988888888888998999999999999999999999888755

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=92.23  E-value=9.5  Score=36.53  Aligned_cols=92  Identities=24%  Similarity=0.231  Sum_probs=71.0

Q ss_pred             ChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh
Q 006669          407 DVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL  485 (636)
Q Consensus       407 d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL  485 (636)
                      ++.++.+++.++..|+. ++..-+     ..++.+...|+++++.+|.+|+.+|..|...+--|..   ...+..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence            46788999999999987 433222     2478888999999999999999999999765533222   12336777888


Q ss_pred             ccCCHHHHHHHHHHHHhhhhc
Q 006669          486 QNGSTRGRKDAATALFNLCIY  506 (636)
Q Consensus       486 ~~~~~~~k~~A~~aL~nL~~~  506 (636)
                      .+.++.++..|...+..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999988765

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.01  E-value=6.2  Score=47.52  Aligned_cols=218  Identities=19%  Similarity=0.244  Sum_probs=127.2

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Cc-chHHHHHHhCChH
Q 006669          363 SRSVEERRAAVAEIRSLSKRSTDNRIIIADA--GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YE-NNKGLIMLAGAIP  438 (636)
Q Consensus       363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~--g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~-~~k~~I~~~G~I~  438 (636)
                      +.+..+|.++-+.|..++.. +.........  ..-..|..-+++.+...+..++.+|..|-. ++ +....+..  .|+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHH
Confidence            44788999999999998864 2222111110  112334444445556677777777766655 23 33443333  355


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHccC----CCchhHHHHhcCchHHHHhhhccC----CHHHHHHHHHHHHhhhhccchH
Q 006669          439 SIVQILRAGSMEARENAAATLFSLSL----LDENKIIIGASGAIPALVDLLQNG----STRGRKDAATALFNLCIYMGNK  510 (636)
Q Consensus       439 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~~~~n~  510 (636)
                      -++-.++.-+...+++|-.+|..+..    .+.....  ....+...+..+..|    .....-..+.++..+....   
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~---  816 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF---  816 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH---
Confidence            55555577788999999999998862    1111000  112455555555544    2222222244555544322   


Q ss_pred             HHHHHh----chHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          511 GRAVRA----GIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       511 ~~lv~~----g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                      ..+++.    +.+..+...|.+.+++++..|++.+..++. .|+..-.-.....++.+..+++..+...+..+--.|-.|
T Consensus       817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            222333    344555555677999999999999998876 454433333334678888888877777777777777777


Q ss_pred             hcc
Q 006669          586 CKR  588 (636)
Q Consensus       586 ~~~  588 (636)
                      +..
T Consensus       897 irk  899 (1176)
T KOG1248|consen  897 IRK  899 (1176)
T ss_pred             HHH
Confidence            653

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.98  E-value=4.7  Score=41.25  Aligned_cols=184  Identities=18%  Similarity=0.187  Sum_probs=114.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhC--ChHHHHHHHhc----CcHHHHHHHHHHHHHccCCCchhH
Q 006669          397 PVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAG--AIPSIVQILRA----GSMEARENAAATLFSLSLLDENKI  470 (636)
Q Consensus       397 ~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G--~I~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~~~  470 (636)
                      ..+...+.+-..+.+--++.+++-+..++..-..+...+  ....+..++..    ..+..+.-+++++.|+-.....+.
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~  145 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ  145 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence            345555555455556677777777777776655554432  34555555543    357788889999999988888888


Q ss_pred             HHHhc-C-chHHHHhhhccC----CHHHHHHHHHHHHhhhhccc-hH-HHHHHhchHHHHHHHh-cC-CCHHHHHHHHHH
Q 006669          471 IIGAS-G-AIPALVDLLQNG----STRGRKDAATALFNLCIYMG-NK-GRAVRAGIISALLKML-TD-SRNCMVDEALTI  540 (636)
Q Consensus       471 ~i~~~-g-~i~~Lv~LL~~~----~~~~k~~A~~aL~nL~~~~~-n~-~~lv~~g~v~~Lv~lL-~~-~~~~~~~~Al~~  540 (636)
                      .+... + .+-..+..+...    +...+..+++.++|++...- ++ ..-.....+..+++.+ .. .+++....++.+
T Consensus       146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA  225 (268)
T PF08324_consen  146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA  225 (268)
T ss_dssp             HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred             HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence            77766 4 455554444444    57788889999999975431 11 1112223456666643 33 688999999999


Q ss_pred             HHHHhcChhhHHHHHhc-CcHHHHHHHHc-CCCHHHHHHHHH
Q 006669          541 LSVLASNPEAKIAIVKA-STIPVLIVLLR-TGLPRNKENAAA  580 (636)
Q Consensus       541 L~~La~~~~~~~~i~~~-g~i~~Lv~lL~-~~s~~~ke~A~~  580 (636)
                      |.+|...+......... |+-..+-..-. ...++.++.+..
T Consensus       226 lGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e  267 (268)
T PF08324_consen  226 LGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE  267 (268)
T ss_dssp             HHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence            99999877666666553 33333333332 345777776543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=91.95  E-value=1.7  Score=44.21  Aligned_cols=95  Identities=19%  Similarity=0.264  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh
Q 006669          533 MVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK  610 (636)
Q Consensus       533 ~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~  610 (636)
                      ....|+.+|.-+|- ||..+..+.+...+..++.+|. ..++.++-.++.+|..+...++.+...+.+.+|+..+..+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            44567788876665 8999999999999999999995 456889999999999999999999999999999999999998


Q ss_pred             cC--CHHHHHHHHHHHHHh
Q 006669          611 SG--TERAKRKATSLLEHL  627 (636)
Q Consensus       611 ~g--~~~~k~kA~~lL~~l  627 (636)
                      +.  +..+|-|..+.|-..
T Consensus       187 ~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             cccccHHHhHHHHHHHHHH
Confidence            64  577888888877644

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=91.91  E-value=11  Score=40.21  Aligned_cols=198  Identities=15%  Similarity=0.104  Sum_probs=145.6

Q ss_pred             HHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH-----HHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHH
Q 006669          390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK-----GLIMLAGAIPSIVQILRAG--SMEARENAAATLFS  461 (636)
Q Consensus       390 i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k-----~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~  461 (636)
                      +...+.+..|+..|..-+-+.+..++.+..++... ..++     ..+.  .--+-++..|-.|  +++....+...|..
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~--~~~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE--RHRPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH--T--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH--hCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence            44568889999999989999999999999998763 2222     1222  2223444444343  57777888888888


Q ss_pred             ccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHh---chHHHHHHHhcCCCHHHHHHH
Q 006669          462 LSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRA---GIISALLKMLTDSRNCMVDEA  537 (636)
Q Consensus       462 Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~---g~v~~Lv~lL~~~~~~~~~~A  537 (636)
                      ....+.....|.....+..+.+.++.++-++..+|...+..|-..+ .-.+..+..   ..+.....+|.+++=-++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            8877777777777888888999999999999999999999876554 344555543   466778888888888899999


Q ss_pred             HHHHHHHhcChhhHHHHHh----cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669          538 LTILSVLASNPEAKIAIVK----ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD  589 (636)
Q Consensus       538 l~~L~~La~~~~~~~~i~~----~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~  589 (636)
                      +..|..|-..+.+-..+..    ..-+..++.+|++.+..++-.|..+..-...+.
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            9999999998888776654    234777888889999999999999998777653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.70  E-value=0.12  Score=51.11  Aligned_cols=52  Identities=13%  Similarity=0.247  Sum_probs=42.8

Q ss_pred             CCcccCccchhhccC----CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669          255 PADFLCPISLELMRD----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP  309 (636)
Q Consensus       255 p~~f~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  309 (636)
                      ...|.|||++-.|.+    -++.+|||.|.-++.++.-   ..+|++|++.+...+.++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence            356999999999977    4578999999999877643   578999999998877653

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.57  E-value=0.43  Score=42.52  Aligned_cols=68  Identities=25%  Similarity=0.321  Sum_probs=55.8

Q ss_pred             CHHHHHHhh-cCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHc
Q 006669          395 AIPVLVNLL-TTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSL  462 (636)
Q Consensus       395 ~i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~L  462 (636)
                      .+..|+.+| .+.|+.+..-|+.=|..+.. +|..+..+-+.|+=..++.++.+++++++.+|+.++..+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            467899999 44577777778888888888 788888887889999999999999999999999988765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=91.57  E-value=6.7  Score=40.93  Aligned_cols=186  Identities=17%  Similarity=0.190  Sum_probs=118.6

Q ss_pred             CHHHHH-HhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch--hHH
Q 006669          395 AIPVLV-NLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN--KII  471 (636)
Q Consensus       395 ~i~~Lv-~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~  471 (636)
                      .+..|+ ..+.+.++.+++.|+.+|.-.+..+.   .+.. ..++.+...+..++.+++..|+.+++.+......  ...
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~  102 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS  102 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence            344444 67788999999999999998887433   1111 2367788888888999999999999998554321  111


Q ss_pred             -------HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC----CCHHHHHHHHHH
Q 006669          472 -------IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD----SRNCMVDEALTI  540 (636)
Q Consensus       472 -------i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~----~~~~~~~~Al~~  540 (636)
                             ......++.+.+.+.+.+++.+..|+..+..|..++....   ...++..|+-+-.+    .+..++..-...
T Consensus       103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F  179 (298)
T PF12719_consen  103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF  179 (298)
T ss_pred             hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence                   1223567778888888889999999999999876553322   23345555555433    344555444455


Q ss_pred             HHHHhcChhhHHHHHhcCcHHHHHHHHcCC----CHHH---HHHHHHHHHHhhc
Q 006669          541 LSVLASNPEAKIAIVKASTIPVLIVLLRTG----LPRN---KENAAAILLSLCK  587 (636)
Q Consensus       541 L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~----s~~~---ke~A~~~L~~L~~  587 (636)
                      +-..|......+......++|.+-.+....    ++..   -...+..+..++.
T Consensus       180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~  233 (298)
T PF12719_consen  180 FPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD  233 (298)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence            556666554444555667778877777642    2211   2245566666664

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.28  E-value=5.1  Score=46.64  Aligned_cols=214  Identities=18%  Similarity=0.152  Sum_probs=130.4

Q ss_pred             cCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHh
Q 006669          404 TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVD  483 (636)
Q Consensus       404 ~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~  483 (636)
                      ..+-+.++-.++..|..+.....-+..+...+.+....+.|++.++-+-.+|...+..|+...       ....+|-|.+
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-------~e~il~dL~e  809 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-------PEDILPDLSE  809 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------chhhHHHHHH
Confidence            334456777888888888875566677778889999999999988888888888777776542       2245566655


Q ss_pred             -hhccC--C-HHHHHHHHHHHHhhhhccch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HHHHHh
Q 006669          484 -LLQNG--S-TRGRKDAATALFNLCIYMGN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA--KIAIVK  556 (636)
Q Consensus       484 -LL~~~--~-~~~k~~A~~aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~  556 (636)
                       .....  + ++.+...-.|+.++....+. ..+.. +-.+...+..+++++...+..++++|++||.--..  ...+. 
T Consensus       810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-  887 (982)
T KOG4653|consen  810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-  887 (982)
T ss_pred             HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-
Confidence             33221  1 22333333555555433221 11111 23556667777777777888899999999874332  12222 


Q ss_pred             cCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhccChHHHHHHHHcCC---hHHHHHhhhc-CCHHHHHHHHHHHHHh
Q 006669          557 ASTIPVLIVLLRT-GLPRNKENAAAILLSLCKRDTENLACISRLGA---VIPLTELTKS-GTERAKRKATSLLEHL  627 (636)
Q Consensus       557 ~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~---i~~L~~Ll~~-g~~~~k~kA~~lL~~l  627 (636)
                       .++..++.+.+. +++-.|..|+-++..+-.+.+...-.+.+.-.   ...+...... .++.+|-.|...+..+
T Consensus       888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence             245555666654 67889999999998887766555444443323   3333334433 3455566666555544

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.21  E-value=13  Score=42.96  Aligned_cols=257  Identities=19%  Similarity=0.188  Sum_probs=132.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccc-----
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YEN-----  426 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~-----  426 (636)
                      ..+++=..|++...-+..+|++.+..|...++  | .+.  .++..|-.+|++..+.++..|+.+|..++. ++.     
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r-~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--R-ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--h-hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            45566667777788889999999999875443  2 121  277888888999999999999999999987 432     


Q ss_pred             hH---HHHHHh---CChHHHHHHHhcCcHHHHHHHHHHHHHccC--CCchhHHHHhc-------------CchHHHHhhh
Q 006669          427 NK---GLIMLA---GAIPSIVQILRAGSMEARENAAATLFSLSL--LDENKIIIGAS-------------GAIPALVDLL  485 (636)
Q Consensus       427 ~k---~~I~~~---G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~i~~~-------------g~i~~Lv~LL  485 (636)
                      |+   ..|-..   -+-..+..+|+.|+.+....-...+.+...  +++++..+.++             +.+..|-.+|
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L  400 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML  400 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            11   122221   134566677777765544444433333321  13343322211             2223333333


Q ss_pred             cc-CCHHHHHHHHHHHHhhhh-ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHH
Q 006669          486 QN-GSTRGRKDAATALFNLCI-YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVL  563 (636)
Q Consensus       486 ~~-~~~~~k~~A~~aL~nL~~-~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~L  563 (636)
                      ++ |.-+-|+....++..+.. +++.|..     ++..|...+.+  -+....+..+|..|-....  ....-...+..+
T Consensus       401 r~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIED--ce~~~i~~rILhlLG~EgP--~a~~Pskyir~i  471 (865)
T KOG1078|consen  401 REEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIED--CEFTQIAVRILHLLGKEGP--KAPNPSKYIRFI  471 (865)
T ss_pred             HhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh--ccchHHHHHHHHHHhccCC--CCCCcchhhHHH
Confidence            22 222333333333333222 1111211     22223333322  1222334444444332100  000001122233


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          564 IVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       564 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      ...+.-.+..++..|+.+|..+...++.     ....+.-.|...+.+.++.+|+.|+..|+.+.
T Consensus       472 yNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  472 YNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            3323334566677777777777643321     12223444556667789999999999999987

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.20  E-value=4.1  Score=44.42  Aligned_cols=142  Identities=18%  Similarity=0.183  Sum_probs=95.2

Q ss_pred             HHHhcCcHHHHHHHHHHHHHccCCCc----hhHHHHhcCchHHHHhhhccC------CHH-HHHHHHHHHHhhhhccch-
Q 006669          442 QILRAGSMEARENAAATLFSLSLLDE----NKIIIGASGAIPALVDLLQNG------STR-GRKDAATALFNLCIYMGN-  509 (636)
Q Consensus       442 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~LL~~~------~~~-~k~~A~~aL~nL~~~~~n-  509 (636)
                      .+++..+.+-+-.|.-.+..+.-.++    +|..+.++-+++.+=.++..+      ++. -+..++..|...|..++- 
T Consensus        18 ~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA   97 (698)
T KOG2611|consen   18 KLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA   97 (698)
T ss_pred             HHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc
Confidence            33333344455555555555554443    677788887778888888754      222 345567788888887753 


Q ss_pred             -HHHHHHhchHHHHHHHhcC-CC------HHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHH
Q 006669          510 -KGRAVRAGIISALLKMLTD-SR------NCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL-PRNKENAAA  580 (636)
Q Consensus       510 -~~~lv~~g~v~~Lv~lL~~-~~------~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~  580 (636)
                       ...+++  .||.|.+.+.. .+      ..+.+.+-.+|..+++++.|...++..|+++.+.++-.-.+ .....-|..
T Consensus        98 sh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~  175 (698)
T KOG2611|consen   98 SHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK  175 (698)
T ss_pred             cCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence             556664  69999999854 22      34889999999999999999999999999999997654322 223334444


Q ss_pred             HHHHh
Q 006669          581 ILLSL  585 (636)
Q Consensus       581 ~L~~L  585 (636)
                      ++.-+
T Consensus       176 Vlll~  180 (698)
T KOG2611|consen  176 VLLLL  180 (698)
T ss_pred             HHHHH
Confidence            44433

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.16  E-value=12  Score=43.28  Aligned_cols=218  Identities=20%  Similarity=0.250  Sum_probs=115.5

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-------------------
Q 006669          365 SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE-------------------  425 (636)
Q Consensus       365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~-------------------  425 (636)
                      +...|.-.+..|+..+..++.-+...     |..+..+|.+.++.+..+|...|.+||.++                   
T Consensus       219 ~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd  293 (948)
T KOG1058|consen  219 NDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD  293 (948)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence            45556666667777666555544433     456777776666555555555554444322                   


Q ss_pred             chHHHHHH--------------hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc----
Q 006669          426 NNKGLIML--------------AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN----  487 (636)
Q Consensus       426 ~~k~~I~~--------------~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~----  487 (636)
                      .|-..|+.              .|.+--++++|.+++-+++..+..+.+.|+...          -+..++.+|+.    
T Consensus       294 nnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~k  363 (948)
T KOG1058|consen  294 NNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMK  363 (948)
T ss_pred             cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHh
Confidence            22222210              122223334444555666666666666554433          33444444431    


Q ss_pred             ---C----CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCc
Q 006669          488 ---G----STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKAST  559 (636)
Q Consensus       488 ---~----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~  559 (636)
                         +    +..-+..-..++..-+..-+    =+.+.+|+.|++.+.+.++......+..+...-. .|.-|..|     
T Consensus       364 T~~~e~d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----  434 (948)
T KOG1058|consen  364 THNEESDDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----  434 (948)
T ss_pred             ccccccccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----
Confidence               1    12234444455554443221    1345689999999998887665555555543332 44444444     


Q ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHHhhccChHHHH--HHH--HcCChHHHH
Q 006669          560 IPVLIVLLRT-GLPRNKENAAAILLSLCKRDTENLA--CIS--RLGAVIPLT  606 (636)
Q Consensus       560 i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~--~i~--~~G~i~~L~  606 (636)
                      |..|++-+.. .+.+.-+.|+|++..-|....+...  ..+  ..|-+|.+.
T Consensus       435 i~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~  486 (948)
T KOG1058|consen  435 IEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVC  486 (948)
T ss_pred             HHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceeh
Confidence            4455554432 4566778899999988876653333  222  245555444

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.98  E-value=0.13  Score=55.31  Aligned_cols=51  Identities=18%  Similarity=0.443  Sum_probs=38.5

Q ss_pred             CCCcccCccchhhc-----------------cCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          254 IPADFLCPISLELM-----------------RDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       254 ~p~~f~CPis~~~m-----------------~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      +-+.--||||+...                 ++=.+.||.|.|-|.|.++|.+.-.-.||+|+.+++.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            33445799998643                 1234569999999999999998545589999998864

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=90.88  E-value=30  Score=38.86  Aligned_cols=266  Identities=14%  Similarity=0.109  Sum_probs=137.9

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----cCC-ChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL----TTD-DVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       358 v~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL----~s~-d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      ++.|+++.+.....|+..+..++.-.-       -.|..|-|...+    ..+ ....+.+++.++.+.+..+.....+.
T Consensus       100 l~aL~s~epr~~~~Aaql~aaIA~~El-------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~  172 (858)
T COG5215         100 LRALKSPEPRFCTMAAQLLAAIARMEL-------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQ  172 (858)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHhhC-------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHH
Confidence            455677777777777777766664211       124555555444    222 24567888999999988655555554


Q ss_pred             HhC-ChHHHH-HHHhcC-cHHHHHHHHHHHHH-ccCCCchhHHHHhcC-chHHHHhhhccCCHHHHHHHHHHHHhhh-hc
Q 006669          433 LAG-AIPSIV-QILRAG-SMEARENAAATLFS-LSLLDENKIIIGASG-AIPALVDLLQNGSTRGRKDAATALFNLC-IY  506 (636)
Q Consensus       433 ~~G-~I~~Lv-~lL~~~-~~e~~~~Aa~~L~~-Ls~~~~~~~~i~~~g-~i~~Lv~LL~~~~~~~k~~A~~aL~nL~-~~  506 (636)
                      ..+ ++-.++ .-++++ +..+|..|+.+|.+ |-+..+|-..=.+.+ .+...++.-+..+.+.+..|..+|..+. .+
T Consensus       173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly  252 (858)
T COG5215         173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY  252 (858)
T ss_pred             HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence            443 333333 345555 56788888888887 543332211111222 2333444444456667777777776653 22


Q ss_pred             cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHH----------------HhcCcHHHHHHHHcC
Q 006669          507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP-EAKIAI----------------VKASTIPVLIVLLRT  569 (636)
Q Consensus       507 ~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~~~~~i----------------~~~g~i~~Lv~lL~~  569 (636)
                      ...-....+.-......+.+++.++++...|+..-..+|..+ ++.-++                .-.+++|.|+.+|..
T Consensus       253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~  332 (858)
T COG5215         253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK  332 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence            222223333333344455566666666555554444444311 000000                001244455554432


Q ss_pred             ---------------------------------------------CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHH
Q 006669          570 ---------------------------------------------GLPRNKENAAAILLSLCKRDTENLACISRLGAVIP  604 (636)
Q Consensus       570 ---------------------------------------------~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~  604 (636)
                                                                   .+...++.|+.++..+..+..+.+..-+-+.++|.
T Consensus       333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~  412 (858)
T COG5215         333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPG  412 (858)
T ss_pred             cCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHH
Confidence                                                         33344455555554444333233333333445666


Q ss_pred             HHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          605 LTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       605 L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      +..+..+..--++..++|.+-.+..+
T Consensus       413 i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         413 IENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             HHHhcccceeehhhHHHHHHHHHHHH
Confidence            77666666677788888888777553

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=90.66  E-value=4.3  Score=47.49  Aligned_cols=179  Identities=13%  Similarity=0.077  Sum_probs=124.4

Q ss_pred             cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhc
Q 006669          448 SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT  527 (636)
Q Consensus       448 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~  527 (636)
                      .+.++..|++++..-+...  ...=...+.+..|.++....+.++--.-+.+|...+..++......+.-+.|-.+.++.
T Consensus       504 ~~~~ki~a~~~~~~~~~~~--vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~  581 (1005)
T KOG2274|consen  504 PPPVKISAVRAFCGYCKVK--VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL  581 (1005)
T ss_pred             CCchhHHHHHHHHhccCce--eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence            4566777777777655111  00111236788888888877888888888999999998888888888888888888763


Q ss_pred             --CCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCC----HHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 006669          528 --DSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL----PRNKENAAAILLSLCKRDTENLACISRLGA  601 (636)
Q Consensus       528 --~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s----~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~  601 (636)
                        +.++-+...+-.++..|+....+..-+. ...||.++..|....    +....-|+.+|-.+.++.+.-.....-.-+
T Consensus       582 k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~  660 (1005)
T KOG2274|consen  582 KYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA  660 (1005)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence              3667777888888887777544444332 357999999998643    455566777887777776544333222235


Q ss_pred             hHHHHHh-hhcCCHHHHHHHHHHHHHhhc
Q 006669          602 VIPLTEL-TKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       602 i~~L~~L-l~~g~~~~k~kA~~lL~~l~~  629 (636)
                      .+++.+. +++++...-+.|.++|+.+-.
T Consensus       661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  661 FPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             hHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            6666654 577888888999999997754

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=90.52  E-value=10  Score=39.55  Aligned_cols=168  Identities=14%  Similarity=0.106  Sum_probs=106.1

Q ss_pred             HHHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccc-hHH
Q 006669          353 AIEALV-RKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YEN-NKG  429 (636)
Q Consensus       353 ~i~~Lv-~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~-~k~  429 (636)
                      .+..|+ ..+.+.+..+|+.|+++|...+--+.+...     ..++.+...+..++..++..|+.++..+.. +.. .-.
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            344444 667888999999999999998865542221     236678888877889999999999998875 321 111


Q ss_pred             -------HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC----CHHHHHHHHH
Q 006669          430 -------LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG----STRGRKDAAT  498 (636)
Q Consensus       430 -------~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~----~~~~k~~A~~  498 (636)
                             .......+..+...|.+.+++++..|+..+..|-..+....   ....+..|+-+--+.    +.+.+..-..
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~  178 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV  178 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence                   11223466777788888899999999999988755443222   123334444332222    2344443333


Q ss_pred             HHHhhhhccchHHHHHHhchHHHHHHHhcC
Q 006669          499 ALFNLCIYMGNKGRAVRAGIISALLKMLTD  528 (636)
Q Consensus       499 aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~  528 (636)
                      .+-..+..+...+..+....++.+-.+...
T Consensus       179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  179 FFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            344456656555666666777777776644

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=90.08  E-value=18  Score=36.69  Aligned_cols=196  Identities=22%  Similarity=0.190  Sum_probs=118.3

Q ss_pred             CHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC---
Q 006669          350 DVVAIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY---  424 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~---  424 (636)
                      +..+++.|+..|...  .+-++.+|..+|..+..  +         ..++.+-+..+.+...+.+....++..+-..   
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence            345789999988644  45667788888877762  1         2344555555444455555555555444321   


Q ss_pred             cc--hHHHHH--------HhCChHHHHHHHhcCc-H-HHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHH
Q 006669          425 EN--NKGLIM--------LAGAIPSIVQILRAGS-M-EARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRG  492 (636)
Q Consensus       425 ~~--~k~~I~--------~~G~I~~Lv~lL~~~~-~-e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~  492 (636)
                      +.  +.....        .-+-+..+-..|...+ + --+..|.-.|.|+          +...+|..|++=+..++.-.
T Consensus       134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~Salf  203 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALF  203 (289)
T ss_pred             ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHH
Confidence            00  000000        1122344444444332 1 2233333333333          22236677777777778888


Q ss_pred             HHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC
Q 006669          493 RKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD--SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG  570 (636)
Q Consensus       493 k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~  570 (636)
                      +..++.++..|-.-          -+||.|.+.|.+  .++.++-.|+.+|..++.          ..+++.|.+++...
T Consensus       204 rhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~  263 (289)
T KOG0567|consen  204 RHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDE  263 (289)
T ss_pred             HHHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCc
Confidence            88888888877432          378889998866  677788889999987665          35678888888888


Q ss_pred             CHHHHHHHHHHHHHhh
Q 006669          571 LPRNKENAAAILLSLC  586 (636)
Q Consensus       571 s~~~ke~A~~~L~~L~  586 (636)
                      ++-+++.|..+|-.+-
T Consensus       264 ~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  264 ERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888877775443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=90.06  E-value=16  Score=44.34  Aligned_cols=254  Identities=17%  Similarity=0.200  Sum_probs=138.9

Q ss_pred             CHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh----CcchHHHHHHhCChHH
Q 006669          365 SVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI----YENNKGLIMLAGAIPS  439 (636)
Q Consensus       365 ~~~~~~~Al~~L~~La~~-~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~----~~~~k~~I~~~G~I~~  439 (636)
                      ..+.+..|+.-|..|+.. +++++-    .-.+|.++.++...++.+|..|+.+|..+..    .+..-..|.-.-.+|.
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~  511 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH  511 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence            346788899999999864 233322    2358999999998899999999988877643    1222233444456788


Q ss_pred             HHHHHhcCc-HHHHHHHHHHHHHccC------------------CCchhH---------HHHhc-CchHH-HHhhhccCC
Q 006669          440 IVQILRAGS-MEARENAAATLFSLSL------------------LDENKI---------IIGAS-GAIPA-LVDLLQNGS  489 (636)
Q Consensus       440 Lv~lL~~~~-~e~~~~Aa~~L~~Ls~------------------~~~~~~---------~i~~~-g~i~~-Lv~LL~~~~  489 (636)
                      |-+++.+.+ ..++..-|..|..|+.                  ++.+-.         ...+. ..+.. .+.+|.+.+
T Consensus       512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~  591 (1431)
T KOG1240|consen  512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP  591 (1431)
T ss_pred             hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence            888887632 3333332333333321                  111110         00000 11222 233444445


Q ss_pred             HHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC
Q 006669          490 TRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT  569 (636)
Q Consensus       490 ~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~  569 (636)
                      +-+|..-+..|.-||..-+- .+ ...=+++.|+-.|.+.+..++-.=..-+.-+|..-.-|  -++++.+|.|.+-|..
T Consensus       592 ~~Vkr~Lle~i~~LC~FFGk-~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD  667 (1431)
T KOG1240|consen  592 PIVKRALLESIIPLCVFFGK-EK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTD  667 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHhhh-cc-cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccC
Confidence            55666555666666632110 00 00115666777777776655543333333333322222  1244667888888888


Q ss_pred             CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       570 ~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      +.+.+-..|+..|..||..+-=....+.+  .++-..-++-..+.-+|+.+..++-.+.
T Consensus       668 ~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~  724 (1431)
T KOG1240|consen  668 GEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIA  724 (1431)
T ss_pred             cchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence            88888889999988888753211111111  2333334455677778888877766554

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=89.60  E-value=1  Score=44.85  Aligned_cols=87  Identities=17%  Similarity=0.121  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHhcChhhHHHHHhcCc-------HHHHHHHHc-CCCHHHHHHHHHHHHHhhccChHHHH-HHHHcCChH
Q 006669          533 MVDEALTILSVLASNPEAKIAIVKAST-------IPVLIVLLR-TGLPRNKENAAAILLSLCKRDTENLA-CISRLGAVI  603 (636)
Q Consensus       533 ~~~~Al~~L~~La~~~~~~~~i~~~g~-------i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~-~i~~~G~i~  603 (636)
                      -+..|+.+|..|+-.+.|...+...+-       +..|+++|. .+++-.||.|+.+|.+||..+...+. ...+.+.+.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            467899999999998888887776653       444555554 35688999999999999998887664 457889999


Q ss_pred             HHHHhhhcCCHHHHHH
Q 006669          604 PLTELTKSGTERAKRK  619 (636)
Q Consensus       604 ~L~~Ll~~g~~~~k~k  619 (636)
                      .|+.++.+....+...
T Consensus       220 ~Li~FiE~a~~~~~~~  235 (257)
T PF12031_consen  220 HLIAFIEDAEQNAHQV  235 (257)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998876555433

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.66  E-value=0.11  Score=38.74  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=36.9

Q ss_pred             cCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          259 LCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       259 ~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      -|.||.+---|.|+-.|||- .|-.|=.+.+..++..||.|+.+..
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            49999999999999999996 6677766666668899999998653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=88.63  E-value=7.8  Score=43.96  Aligned_cols=162  Identities=17%  Similarity=0.141  Sum_probs=102.3

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhccChhhHHHHH---hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCC
Q 006669          360 KLSSRSVEERRAAVAEIRSLSKRSTDNRIIIA---DAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGA  436 (636)
Q Consensus       360 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~---e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~  436 (636)
                      .+-.-.++.+.-|+..||.+.++...+-..+-   ....+..++..+. .++..+.-++.+|.|+..++.++..++..  
T Consensus       552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--  628 (745)
T KOG0301|consen  552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--  628 (745)
T ss_pred             HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--
Confidence            33445677888899999999887665544433   1235666666665 66778889999999999998888887764  


Q ss_pred             hHHHHHH---HhcC-cHHHHHHHHHHHHHccCC--CchhHHHHhcCchHHHHhhhccC-----CHHHHHHHHHHHHhhhh
Q 006669          437 IPSIVQI---LRAG-SMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLLQNG-----STRGRKDAATALFNLCI  505 (636)
Q Consensus       437 I~~Lv~l---L~~~-~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~LL~~~-----~~~~k~~A~~aL~nL~~  505 (636)
                      ...+...   .+++ +...+...+...+|++..  ..+-    +.+..+.|...+...     +-+.....+.||.+|+.
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t  704 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT  704 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence            2222222   2333 344555555555555421  1111    124555555544432     33567788899999999


Q ss_pred             ccchHHHHHHhchHHHHHHHhcC
Q 006669          506 YMGNKGRAVRAGIISALLKMLTD  528 (636)
Q Consensus       506 ~~~n~~~lv~~g~v~~Lv~lL~~  528 (636)
                      .+.+..++...--|..+++.+++
T Consensus       705 ~~~~~~~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  705 VDASVIQLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             ccHHHHHHHHhcCHHHHHHHHHH
Confidence            88787777765566677776654

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=88.37  E-value=15  Score=40.34  Aligned_cols=186  Identities=17%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-cCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669          353 AIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKGL  430 (636)
Q Consensus       353 ~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~~~~~k~~  430 (636)
                      .+..++....+ .++..+..+++.+..+.-.-+..- .+  ...+..+...+ ...+...+..++.++.-+++     ..
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-----aL  261 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWITK-----AL  261 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----HH
Confidence            45666665543 346677777777777663311110 00  02223333333 23344455555555544432     23


Q ss_pred             HHH-----hCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-Cc--------hhHHHHhc----CchHHHHhhhccCCHHH
Q 006669          431 IML-----AGAIPSIVQILRAGSMEARENAAATLFSLSLL-DE--------NKIIIGAS----GAIPALVDLLQNGSTRG  492 (636)
Q Consensus       431 I~~-----~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~--------~~~~i~~~----g~i~~Lv~LL~~~~~~~  492 (636)
                      +++     ...+..|+++|.+  ++....|+..+.-|..+ ++        +...+.+.    ..+|.|++-.+..+...
T Consensus       262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~  339 (415)
T PF12460_consen  262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI  339 (415)
T ss_pred             HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence            332     1234556666655  66677788888777655 22        11222222    35677777777766678


Q ss_pred             HHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Q 006669          493 RKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLASNP  548 (636)
Q Consensus       493 k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~  548 (636)
                      |.+-+.||.++..+-+....+-+ ...+|.|++-|.-++..++..++.+|..+....
T Consensus       340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            88899999999876664444444 558899999998888899999999999888754

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.32  E-value=0.38  Score=35.95  Aligned_cols=45  Identities=18%  Similarity=0.365  Sum_probs=24.5

Q ss_pred             cccCccchhhccCCee-cCCCch--hhhHHH-HHHHcCCCCCCCCCCcc
Q 006669          257 DFLCPISLELMRDPVI-VATGQT--YERSYI-QRWIDCGNVTCPKTQQK  301 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~-~~~G~t--~~r~~I-~~w~~~~~~~cP~~~~~  301 (636)
                      .+.||||.+.|+-||= ..|-|.  ||-... +.....+.-.||+|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            4689999999999996 677665  776443 33344455679999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.23  E-value=0.26  Score=51.98  Aligned_cols=60  Identities=25%  Similarity=0.564  Sum_probs=45.7

Q ss_pred             ccCccchhhccCC-----eecCCCchhhhHHHHHHHcC-CCCCCCCCCcccccCCcccchhHHHHH
Q 006669          258 FLCPISLELMRDP-----VIVATGQTYERSYIQRWIDC-GNVTCPKTQQKLEHLTLTPNYVLRSLI  317 (636)
Q Consensus       258 f~CPis~~~m~dP-----v~~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~l~pn~~lr~lI  317 (636)
                      -+||||++-..=|     |++.|||-|--.||++|+-. -...||.|.-.-....+.+.+++|...
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa   70 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA   70 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence            5799999877544     57899999999999999931 123599997766667777877776553

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=88.18  E-value=4.3  Score=38.91  Aligned_cols=110  Identities=16%  Similarity=0.222  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC---------CChHHHHHHHHHHHHh
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTT---------DDVMTQEHAVTAILNL  421 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s---------~d~~~~e~Av~aL~nL  421 (636)
                      .....+++.+.+.....  ..+..|+..-+.++ .--..+.+.||+..|+.+|..         .+...+..++.+|..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            45777888887765433  45555554443333 335566778999999998852         3456788899999998


Q ss_pred             hhCcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHcc
Q 006669          422 SIYENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLS  463 (636)
Q Consensus       422 s~~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls  463 (636)
                      ..+..+...+.. .+++..|+..|.+.+..++..++.+|..++
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            887777777776 789999999999999999999999988765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=88.10  E-value=43  Score=36.31  Aligned_cols=95  Identities=14%  Similarity=0.192  Sum_probs=74.1

Q ss_pred             CCHHHHHHhhcCC---ChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHh-cC---cHHHHHHHHHHHHHccCC
Q 006669          394 GAIPVLVNLLTTD---DVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILR-AG---SMEARENAAATLFSLSLL  465 (636)
Q Consensus       394 g~i~~Lv~lL~s~---d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~-~~---~~e~~~~Aa~~L~~Ls~~  465 (636)
                      .....|...+++.   .+.+-..|+.++..+-. +|..-..+.++|.++.+++.+. .+   +.++...--.+|..|+.+
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN  185 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN  185 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence            3455566666653   35677888888888877 4556777888999999999888 54   677777777888889999


Q ss_pred             CchhHHHHhcCchHHHHhhhccC
Q 006669          466 DENKIIIGASGAIPALVDLLQNG  488 (636)
Q Consensus       466 ~~~~~~i~~~g~i~~Lv~LL~~~  488 (636)
                      ......+.+.+.++.+++++.+.
T Consensus       186 ~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  186 NRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HHHHHHHHhcChHHHHHHHhCCH
Confidence            99999998899999999887653

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=87.88  E-value=13  Score=43.66  Aligned_cols=263  Identities=16%  Similarity=0.129  Sum_probs=152.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHH
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLI  431 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I  431 (636)
                      ++.....++....+.+..++.....++.. +...+..+.....+|.+-.+....+..++...+....+++- .+  +..-
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~t  434 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERT  434 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcC
Confidence            44455556555555555555555555432 22334444555556777777766677677666666666643 12  1100


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK  510 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~  510 (636)
                       -.-.++.++..++...++++.+-...+..+-... ...........++.++++-.....+.+......+..++...+  
T Consensus       435 -i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--  511 (759)
T KOG0211|consen  435 -ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--  511 (759)
T ss_pred             -ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--
Confidence             0224566666777778888888887776554333 334455556778888888777788888888888888776543  


Q ss_pred             HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHH---HHHHHHHHhhc
Q 006669          511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKE---NAAAILLSLCK  587 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke---~A~~~L~~L~~  587 (636)
                      ..+.+.-..+.+..-+.+....+.+.|...|..++..-. .+.- ....++.++.....++-..|.   .++..|..++.
T Consensus       512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g  589 (759)
T KOG0211|consen  512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG  589 (759)
T ss_pred             hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence            333333333333333444455677778777777765322 1111 113355555555443333333   34444444443


Q ss_pred             cChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          588 RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       588 ~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                            ..+.....++.+..+..+..+.+|-+++..|..+.+
T Consensus       590 ------~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  590 ------QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK  625 (759)
T ss_pred             ------cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence                  223333457777788888888888888877776644

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=87.40  E-value=16  Score=40.17  Aligned_cols=127  Identities=19%  Similarity=0.167  Sum_probs=85.8

Q ss_pred             chHHHHhhhccCCHHHHHHHHHHHHhhhhc-c--------ch-----HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 006669          477 AIPALVDLLQNGSTRGRKDAATALFNLCIY-M--------GN-----KGRAVRAGIISALLKMLTDSRNCMVDEALTILS  542 (636)
Q Consensus       477 ~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~-~--------~n-----~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~  542 (636)
                      .+..|++++.+  +.....|+.++.-|... +        .+     |+++.. -++|.|++.....+.+.+..-+.+|.
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~k~~yL~ALs  348 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhhHHHHHHHHH
Confidence            45667777765  55666777777766554 1        12     333333 37888888887777778888899999


Q ss_pred             HHhcChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHH
Q 006669          543 VLASNPEAKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTE  607 (636)
Q Consensus       543 ~La~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~  607 (636)
                      .+..+-...-.+-+ ...+|.|++-|...++..+..+..+|..+....++....-++ ..++.|++
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~  413 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK  413 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence            88886443333333 347899999998888899999999999998877654444222 34555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=87.36  E-value=1.9  Score=40.62  Aligned_cols=143  Identities=20%  Similarity=0.150  Sum_probs=90.7

Q ss_pred             hHHHHHHHhc--CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHH
Q 006669          437 IPSIVQILRA--GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRA  513 (636)
Q Consensus       437 I~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~l  513 (636)
                      +..++.-|..  .+++++..+.-++..+-  +..+.... .-.-+.+-.++..++.+....+..++..|-.... -...+
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            4445555543  46677777777776662  22222222 1122233334444444567777777777654443 34444


Q ss_pred             -HHhchHHHHHHHhc--CCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC-CHH-HHHHHHHHHH
Q 006669          514 -VRAGIISALLKMLT--DSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG-LPR-NKENAAAILL  583 (636)
Q Consensus       514 -v~~g~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~-~ke~A~~~L~  583 (636)
                       ...|..+.++.++.  ..+......++.+|..=|.+...|..|.+ .+++-|-++++.+ ++. .|..|+-+|.
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence             45899999999998  67888888999999999998888888876 5688888888644 455 5666665554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=87.30  E-value=31  Score=40.53  Aligned_cols=170  Identities=14%  Similarity=0.098  Sum_probs=111.6

Q ss_pred             HHHHccCC-CchhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhccchHHHHHHhchHH--HHHHHhcC-CCHH
Q 006669          458 TLFSLSLL-DENKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYMGNKGRAVRAGIIS--ALLKMLTD-SRNC  532 (636)
Q Consensus       458 ~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~--~Lv~lL~~-~~~~  532 (636)
                      +|+++... .+++..+.+.|++..+...++.- +......++..+.|++...+.+........+.  .+-.++.. .+.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45565543 45778888899999999998854 56788899999999987766544333211121  23334433 3336


Q ss_pred             HHHHHHHHHHHHhcChhh------H----HHHH--------------hcCcHHH-HHHHHcC-CCHHHHHHHHHHHHHhh
Q 006669          533 MVDEALTILSVLASNPEA------K----IAIV--------------KASTIPV-LIVLLRT-GLPRNKENAAAILLSLC  586 (636)
Q Consensus       533 ~~~~Al~~L~~La~~~~~------~----~~i~--------------~~g~i~~-Lv~lL~~-~s~~~ke~A~~~L~~L~  586 (636)
                      ....|+++|+.+..+.+.      +    +.+.              ....+.+ +..++.. .++.....|++++.+++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~  653 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL  653 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence            677889999888764221      1    1111              1112222 4445543 46788899999999999


Q ss_pred             ccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHh
Q 006669          587 KRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHL  627 (636)
Q Consensus       587 ~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l  627 (636)
                      ..+++++..+...|+++.+..+... ....++..+...+...
T Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            9999999999999999988877533 3555566666665544

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=87.26  E-value=1.1  Score=29.63  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=26.0

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669          518 IISALLKMLTDSRNCMVDEALTILSVLASN  547 (636)
Q Consensus       518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  547 (636)
                      ++|.+++++.|+++.++..|+.+|..++.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.20  E-value=9.7  Score=45.26  Aligned_cols=254  Identities=19%  Similarity=0.249  Sum_probs=151.5

Q ss_pred             HHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCc----
Q 006669          373 VAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGS----  448 (636)
Q Consensus       373 l~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~----  448 (636)
                      ..+|-.+-|.+.+|...+.++.++..++.++-++  +-+...+.++..|-..+..+   +...-+-.+|..|++|-    
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I  737 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI  737 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence            4567778889999999999999888888888432  22333344444443321110   01122445677777641    


Q ss_pred             --------HHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhcc----------CCHHHHHHHHHHHHhh-----h
Q 006669          449 --------MEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQN----------GSTRGRKDAATALFNL-----C  504 (636)
Q Consensus       449 --------~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~----------~~~~~k~~A~~aL~nL-----~  504 (636)
                              .........+++.+... ...+...++++++..|...|..          ++..+...-...|+.+     |
T Consensus       738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc  817 (2799)
T KOG1788|consen  738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC  817 (2799)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence                    12344556677766544 3456777888888888776642          1222222233344332     4


Q ss_pred             hccchHHHHH-------------Hhc---------hHHHHHHHh-cC-CCHHHHH--HHHHHHHHHhc------Chh---
Q 006669          505 IYMGNKGRAV-------------RAG---------IISALLKML-TD-SRNCMVD--EALTILSVLAS------NPE---  549 (636)
Q Consensus       505 ~~~~n~~~lv-------------~~g---------~v~~Lv~lL-~~-~~~~~~~--~Al~~L~~La~------~~~---  549 (636)
                      .++.|+.++-             +.|         .|..|.++- .. .++.+..  .|+.-+-.+-.      .|.   
T Consensus       818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf  897 (2799)
T KOG1788|consen  818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF  897 (2799)
T ss_pred             hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence            4455654432             222         222222221 11 1222221  22222222211      122   


Q ss_pred             --hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhh---hcCCHHHHHHHHHHH
Q 006669          550 --AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELT---KSGTERAKRKATSLL  624 (636)
Q Consensus       550 --~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll---~~g~~~~k~kA~~lL  624 (636)
                        ..+.|..+|++..|+..+-...|+.+-.-...|-.+.+.++.+....-..|.++.|++++   .+|+...--.|..++
T Consensus       898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv  977 (2799)
T KOG1788|consen  898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV  977 (2799)
T ss_pred             CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence              356788899999999988778898888889999999999998888888899999999886   357777777777777


Q ss_pred             HHhhccc
Q 006669          625 EHLRKLP  631 (636)
Q Consensus       625 ~~l~~~~  631 (636)
                      .+|+-++
T Consensus       978 emLgayr  984 (2799)
T KOG1788|consen  978 EMLGAYR  984 (2799)
T ss_pred             HHHhhcc
Confidence            7776543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.15  E-value=0.42  Score=50.54  Aligned_cols=49  Identities=14%  Similarity=0.393  Sum_probs=40.7

Q ss_pred             CCcccCccchhhccCCe-----e---cCCCchhhhHHHHHHHcCCC------CCCCCCCcccc
Q 006669          255 PADFLCPISLELMRDPV-----I---VATGQTYERSYIQRWIDCGN------VTCPKTQQKLE  303 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv-----~---~~~G~t~~r~~I~~w~~~~~------~~cP~~~~~l~  303 (636)
                      -.++.|=||++...+++     .   .+|.|+||-.||.+|-....      +.||.|+.+..
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            46899999999999988     5   67999999999999974332      56999987653

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.00  E-value=0.44  Score=52.95  Aligned_cols=40  Identities=30%  Similarity=0.529  Sum_probs=33.4

Q ss_pred             CCCcccCccchhhc----cCCeecCCCchhhhHHHHHHHcCCCCCCC
Q 006669          254 IPADFLCPISLELM----RDPVIVATGQTYERSYIQRWIDCGNVTCP  296 (636)
Q Consensus       254 ~p~~f~CPis~~~m----~dPv~~~~G~t~~r~~I~~w~~~~~~~cP  296 (636)
                      ..+-++|+||...+    ..||.+-||||.||.|.+.-+.   .+||
T Consensus         8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp   51 (861)
T KOG3161|consen    8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP   51 (861)
T ss_pred             hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence            34557899998777    6799999999999999998774   5677

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=86.92  E-value=28  Score=37.51  Aligned_cols=101  Identities=8%  Similarity=0.012  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CChHHHHHHHHHHHHhhh-CcchHHH-HHHhCChH
Q 006669          366 VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----DDVMTQEHAVTAILNLSI-YENNKGL-IMLAGAIP  438 (636)
Q Consensus       366 ~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----~d~~~~e~Av~aL~nLs~-~~~~k~~-I~~~G~I~  438 (636)
                      .++..+|+++|.++..++...|....+......+++.+..     ....++..=+..|.-|+. ....+.. +.+.++++
T Consensus       111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~  190 (532)
T KOG4464|consen  111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE  190 (532)
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence            4677789999999999999999998888766666665532     112233344455554444 3444544 55689999


Q ss_pred             HHHHHHhcC---------c------HHHHHHHHHHHHHccCCC
Q 006669          439 SIVQILRAG---------S------MEARENAAATLFSLSLLD  466 (636)
Q Consensus       439 ~Lv~lL~~~---------~------~e~~~~Aa~~L~~Ls~~~  466 (636)
                      .+...|.+.         +      ......+..++||+..+.
T Consensus       191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence            999998531         1      123456778899987654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=86.64  E-value=21  Score=43.34  Aligned_cols=225  Identities=16%  Similarity=0.219  Sum_probs=125.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHh---cc-ChhhHHHHHhcCCHHHHHHhhcCCCh-HHHHHHHHHHHHhhh----
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLS---KR-STDNRIIIADAGAIPVLVNLLTTDDV-MTQEHAVTAILNLSI----  423 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La---~~-~~~~r~~i~e~g~i~~Lv~lL~s~d~-~~~e~Av~aL~nLs~----  423 (636)
                      .+|.++.++..+..++|..|+..|..+-   +. .+.+-..+.| =..|.|-.++...++ .++..-+..|..|++    
T Consensus       463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r  541 (1431)
T KOG1240|consen  463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR  541 (1431)
T ss_pred             hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence            5778888888889999999988877643   22 2222222222 235566666654232 233222333333332    


Q ss_pred             --------------CcchH-HHHH----------HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc---
Q 006669          424 --------------YENNK-GLIM----------LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS---  475 (636)
Q Consensus       424 --------------~~~~k-~~I~----------~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~---  475 (636)
                                    ++.+- ....          ..++=..++.+|....+-++..-+..|.-|+      ...++.   
T Consensus       542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ksN  615 (1431)
T KOG1240|consen  542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKSN  615 (1431)
T ss_pred             HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhcccc
Confidence                          11010 0000          0011112223333333444443333333332      223332   


Q ss_pred             -CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Q 006669          476 -GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAI  554 (636)
Q Consensus       476 -g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i  554 (636)
                       -.++.|+..|.+.++..+..-...|..+|.+-+-  +-++.+.+|.|.+-|.+..+.+...|+.+|..|+...--+...
T Consensus       616 D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~  693 (1431)
T KOG1240|consen  616 DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA  693 (1431)
T ss_pred             cchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH
Confidence             3577788888887776665544455544443322  2356778999999999999999999999999999854433221


Q ss_pred             HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          555 VKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       555 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      +- ..+....-+|-..+..+|..++.++.....
T Consensus       694 v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  694 VK-DILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HH-HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            11 233344445667888999999999987654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.30  E-value=14  Score=42.89  Aligned_cols=170  Identities=16%  Similarity=0.148  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhc
Q 006669          438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAG  517 (636)
Q Consensus       438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g  517 (636)
                      .-|..+|.+.....+..|..-+..+-...++     -...+|..|..+.+.+.++|+..-..|..-+-.+++-..+    
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL----  108 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL----  108 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence            3456677766555555566554444333322     1246788888888888888886655554444433332222    


Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHH
Q 006669          518 IISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACIS  597 (636)
Q Consensus       518 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~  597 (636)
                      -|..+-+-|.++++.++.-|+.+|..+-.      -++..-.+..+-+.....++.+|..|+-++-.|-+-+++....+ 
T Consensus       109 SIntfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-  181 (968)
T KOG1060|consen  109 SINTFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-  181 (968)
T ss_pred             eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-
Confidence            35566677888888888888887764422      11111112223334445667777777777777766666554433 


Q ss_pred             HcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          598 RLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       598 ~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                          ++.+-.|+.+.++.+--.|..+-..+
T Consensus       182 ----~e~I~~LLaD~splVvgsAv~AF~ev  207 (968)
T KOG1060|consen  182 ----EEVIKKLLADRSPLVVGSAVMAFEEV  207 (968)
T ss_pred             ----HHHHHHHhcCCCCcchhHHHHHHHHh
Confidence                33444555555555555555554433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.26  E-value=14  Score=41.71  Aligned_cols=97  Identities=25%  Similarity=0.348  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      .++..++.+....+..+|..|++.|-.+++++++.-..++     ..|+.+|.++++.....+=.+|..|...+.     
T Consensus        59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-----  128 (556)
T PF05918_consen   59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDP-----  128 (556)
T ss_dssp             HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-H-----
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCc-----
Confidence            4788999999999999999999999999999888877775     589999998887666555556655544211     


Q ss_pred             HHhCChHHHHHHHh---cCcHHHHHHHHHHHH
Q 006669          432 MLAGAIPSIVQILR---AGSMEARENAAATLF  460 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~---~~~~e~~~~Aa~~L~  460 (636)
                        .+.+..+...+.   +++..+|+.+...|.
T Consensus       129 --k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  129 --KGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             --HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence              233444444443   567778888887774

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.18  E-value=0.35  Score=50.61  Aligned_cols=50  Identities=24%  Similarity=0.428  Sum_probs=42.9

Q ss_pred             cccCccchhhccC---CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669          257 DFLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT  306 (636)
Q Consensus       257 ~f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~  306 (636)
                      -+.|-||++.|.|   |++.|+|++|--.+|.+|-..++-.||.++..+..+.
T Consensus       330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~  382 (389)
T KOG0396|consen  330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE  382 (389)
T ss_pred             HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence            3789999999966   9999999999999999998765688999988776543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.05  E-value=2  Score=42.93  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhhhhccchHHHHHHhc-------hHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhh--HHHHHhcCc
Q 006669          490 TRGRKDAATALFNLCIYMGNKGRAVRAG-------IISALLKMLTD-SRNCMVDEALTILSVLASNPEA--KIAIVKAST  559 (636)
Q Consensus       490 ~~~k~~A~~aL~nL~~~~~n~~~lv~~g-------~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~--~~~i~~~g~  559 (636)
                      -.-+..|+.+|..||..+.|-.-++..+       .+..|++++.. ++.-.+|-|+.+|.+||...+.  +....+.++
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            3468899999999999888866555433       66777888755 7888999999999999996554  344456789


Q ss_pred             HHHHHHHHcCC
Q 006669          560 IPVLIVLLRTG  570 (636)
Q Consensus       560 i~~Lv~lL~~~  570 (636)
                      |..|+.++...
T Consensus       218 i~~Li~FiE~a  228 (257)
T PF12031_consen  218 ISHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999999754

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=86.03  E-value=30  Score=38.84  Aligned_cols=227  Identities=12%  Similarity=0.060  Sum_probs=136.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-----------c
Q 006669          357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-----------E  425 (636)
Q Consensus       357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-----------~  425 (636)
                      ..+...+.+.+.|..|..++..+..-....-..+.|.-......+.+++.+.++...|+..-..++..           +
T Consensus       226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p  305 (858)
T COG5215         226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP  305 (858)
T ss_pred             eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence            34445567788888888888876543333344555655566677788888877776666544333321           1


Q ss_pred             ----chHH--HHHHhCChHHHHHHHhcC-------cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHH
Q 006669          426 ----NNKG--LIMLAGAIPSIVQILRAG-------SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRG  492 (636)
Q Consensus       426 ----~~k~--~I~~~G~I~~Lv~lL~~~-------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~  492 (636)
                          .|..  .-.-+..+|.|+.+|...       ++.....|..+|--.+....  ..|.+. .+..+-.-+++.+...
T Consensus       306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~~p-Vl~FvEqni~~~~w~n  382 (858)
T COG5215         306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIMRP-VLGFVEQNIRSESWAN  382 (858)
T ss_pred             cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhHHH-HHHHHHHhccCchhhh
Confidence                0000  111234788999998652       35566666666665544322  223332 2222223456678889


Q ss_pred             HHHHHHHHHhhhhccc--hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh-cCcHHHHHHH-Hc
Q 006669          493 RKDAATALFNLCIYMG--NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK-ASTIPVLIVL-LR  568 (636)
Q Consensus       493 k~~A~~aL~nL~~~~~--n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~l-L~  568 (636)
                      ++.|+.|+......+.  .+..++ ..++|.+..++.+..--+++.+.+++..++.+-   ..+++ .|-++..+.- +.
T Consensus       383 reaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~li  458 (858)
T COG5215         383 REAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLI  458 (858)
T ss_pred             HHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHh
Confidence            9999999988754331  233334 468999999998877778888999999988742   12222 2333333321 21


Q ss_pred             --CCCHHHHHHHHHHHHHhhccCh
Q 006669          569 --TGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       569 --~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                        ..+|....++.+...++..+-+
T Consensus       459 Gl~D~p~~~~ncsw~~~nlv~h~a  482 (858)
T COG5215         459 GLMDCPFRSINCSWRKENLVDHIA  482 (858)
T ss_pred             hhhccchHHhhhHHHHHhHHHhhh
Confidence              2457777788888888776543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=85.96  E-value=11  Score=42.64  Aligned_cols=130  Identities=24%  Similarity=0.319  Sum_probs=82.5

Q ss_pred             hHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHh
Q 006669          478 IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVK  556 (636)
Q Consensus       478 i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~  556 (636)
                      ...++...+ |+...|+.|+..|.....+-+.-    +..++.+++++..+.+..++..|+..|-.+|.+ ++....+  
T Consensus        25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--   97 (556)
T PF05918_consen   25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--   97 (556)
T ss_dssp             HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence            344444444 67889999998887765544332    233677899999999999999999999999985 4555554  


Q ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh---cCCHHHHHHHHHHHH
Q 006669          557 ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK---SGTERAKRKATSLLE  625 (636)
Q Consensus       557 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~---~g~~~~k~kA~~lL~  625 (636)
                         +..|+++|.+.++.....+-.+|..|...++..        .+..|...+.   ++++.+|+++...|+
T Consensus        98 ---aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   98 ---ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             ---HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence               458888998887777777777777777655432        3344444443   678888888776664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=85.93  E-value=0.25  Score=55.96  Aligned_cols=50  Identities=18%  Similarity=0.399  Sum_probs=41.4

Q ss_pred             cccCccchhhccCCee---cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669          257 DFLCPISLELMRDPVI---VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL  307 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~---~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l  307 (636)
                      .=.||+|..-+.|-.+   .+|+|-||-.||..|.. ...+||+++..+....+
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~V  175 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVKV  175 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheeee
Confidence            4579999999988655   68999999999999997 46899999987765443

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=85.65  E-value=0.7  Score=34.08  Aligned_cols=43  Identities=19%  Similarity=0.327  Sum_probs=21.6

Q ss_pred             Cccchhhc--cCCeec--CCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669          260 CPISLELM--RDPVIV--ATGQTYERSYIQRWIDCGNVTCPKTQQKL  302 (636)
Q Consensus       260 CPis~~~m--~dPv~~--~~G~t~~r~~I~~w~~~~~~~cP~~~~~l  302 (636)
                      ||+|.+.|  +|-.+.  +||..++|-|..+-...++..||-|+++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888888  443344  56888999987776666678999999865

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=85.61  E-value=57  Score=37.84  Aligned_cols=127  Identities=19%  Similarity=0.146  Sum_probs=81.4

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhh-hccCCHHHHHHHHHHHHhhhhccchHHHHHHh
Q 006669          438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDL-LQNGSTRGRKDAATALFNLCIYMGNKGRAVRA  516 (636)
Q Consensus       438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~L-L~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~  516 (636)
                      +.+-+++.+.++-.|...+-++..- ...     -++.++|..|++. +.+++.+++..|..+|.-.+..+++       
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alA-y~G-----Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-------  588 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALA-YVG-----TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-------  588 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHH-Hhc-----cCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-------
Confidence            3444455555666666555444321 111     1334678888888 6678999999999999988766543       


Q ss_pred             chHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669          517 GIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS  584 (636)
Q Consensus       517 g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  584 (636)
                       .++..|++|+. -++.++--|+.+|..-|.....+++|-   .+.+   +......-+|+.|+-++..
T Consensus       589 -~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~---lLep---l~~D~~~fVRQgAlIa~am  650 (929)
T KOG2062|consen  589 -QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAIN---LLEP---LTSDPVDFVRQGALIALAM  650 (929)
T ss_pred             -hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHH---HHhh---hhcChHHHHHHHHHHHHHH
Confidence             45666778865 678888888889998888766666542   1222   3334445667777655544

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.52  E-value=0.54  Score=47.97  Aligned_cols=43  Identities=28%  Similarity=0.592  Sum_probs=35.8

Q ss_pred             cccCccchhhccC---CeecCCCchhhhHHHHHHHcCCC--CCCCCCC
Q 006669          257 DFLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGN--VTCPKTQ  299 (636)
Q Consensus       257 ~f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~--~~cP~~~  299 (636)
                      -|.||+..+.-+|   |+++.|||..-..+...--.+|.  +.||-|-
T Consensus       336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP  383 (396)
T COG5109         336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP  383 (396)
T ss_pred             eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence            3899999999977   99999999999999888776664  4488773

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=85.23  E-value=0.51  Score=49.50  Aligned_cols=53  Identities=26%  Similarity=0.400  Sum_probs=47.0

Q ss_pred             cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      .-.|.+++..+.|||-...|..|+-..|--|+.. +.+-|++++++...++++.
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL   92 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKL   92 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceee
Confidence            3579999999999999999999999999999974 5678999999988888764

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=84.98  E-value=1.1  Score=33.28  Aligned_cols=40  Identities=28%  Similarity=0.595  Sum_probs=30.4

Q ss_pred             Cccchh--hccCCeecCCC-----chhhhHHHHHHHcC-CCCCCCCCC
Q 006669          260 CPISLE--LMRDPVIVATG-----QTYERSYIQRWIDC-GNVTCPKTQ  299 (636)
Q Consensus       260 CPis~~--~m~dPv~~~~G-----~t~~r~~I~~w~~~-~~~~cP~~~  299 (636)
                      |-||++  --.+|.+.||.     +.+=+.|+.+|+.. +..+||+|+
T Consensus         2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            677775  33678888874     67999999999974 456899874

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=84.09  E-value=50  Score=34.48  Aligned_cols=198  Identities=14%  Similarity=0.157  Sum_probs=137.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CC-HHHHHHhhcC-CC-hHHHHHHHHHHHHhhhCcch
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GA-IPVLVNLLTT-DD-VMTQEHAVTAILNLSIYENN  427 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~-i~~Lv~lL~s-~d-~~~~e~Av~aL~nLs~~~~~  427 (636)
                      +....|++.+...+.+.+..++....++-+.....|...++. .. ...+-.++.. .+ +++--++-..|..-..++..
T Consensus        79 ~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~L  158 (342)
T KOG1566|consen   79 DVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFL  158 (342)
T ss_pred             CchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHH
Confidence            346667777777778888888777777765555555444432 11 2222233332 22 44444455556666667777


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch-hHHH-Hhc--CchHH-HHhhhccCCHHHHHHHHHHHHh
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIII-GAS--GAIPA-LVDLLQNGSTRGRKDAATALFN  502 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i-~~~--g~i~~-Lv~LL~~~~~~~k~~A~~aL~n  502 (636)
                      .+.|.++.-.......+..++-++...|..+...+-..+.. ...+ ...  ..++. --.++++++.-++..+..+|..
T Consensus       159 akiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~  238 (342)
T KOG1566|consen  159 AKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGE  238 (342)
T ss_pred             HHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHH
Confidence            88888888888888888888888888888888887544432 2222 222  22233 5567888999999999999999


Q ss_pred             hhhccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669          503 LCIYMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPE  549 (636)
Q Consensus       503 L~~~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~  549 (636)
                      +-...+|...+..    ...+..++.+|++.+..++-+|..+.+....+|.
T Consensus       239 llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  239 LLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             HHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            9998888776654    4688899999999999999999999998888654

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=84.07  E-value=14  Score=43.42  Aligned_cols=186  Identities=18%  Similarity=0.235  Sum_probs=122.6

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          354 IEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       354 i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      +..+.+.+.. .++.++..++.-+.++++.-..   .....+.++.+..+...+...+++.|+..+.++...-....- .
T Consensus       238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~  313 (759)
T KOG0211|consen  238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-V  313 (759)
T ss_pred             HHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-h
Confidence            4445555543 4566777777778777764332   555567888899988877778999999888887652111101 1


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc--cchH
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY--MGNK  510 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~--~~n~  510 (636)
                      ..-..+.++.....+++..+...+.....|+..=+-  ..+....+++...+++....+++..++.-...++.+  .+.+
T Consensus       314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence            133567788888888888888888887777532111  233335677788888876666776666655555543  3445


Q ss_pred             HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 006669          511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA  545 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La  545 (636)
                      ..+....++|.+-.+..+.+..+....+.....++
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~  426 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLS  426 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccccccC
Confidence            66666667888888888888777777766666654

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=83.97  E-value=0.69  Score=47.57  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=35.4

Q ss_pred             Cccchhhc--cCCee--cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669          260 CPISLELM--RDPVI--VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL  307 (636)
Q Consensus       260 CPis~~~m--~dPv~--~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l  307 (636)
                      ||+|++.|  +|--+  -+||...||-|....-..-+..||.|+....+..+
T Consensus        17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv   68 (480)
T COG5175          17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV   68 (480)
T ss_pred             CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence            99999999  55444  46788888888554444446789999998877554

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.71  E-value=0.34  Score=48.35  Aligned_cols=54  Identities=19%  Similarity=0.430  Sum_probs=42.6

Q ss_pred             CcccCccchhhccCCe----------ecCCCchhhhHHHHHHHcCC-CCCCCCCCcccccCCccc
Q 006669          256 ADFLCPISLELMRDPV----------IVATGQTYERSYIQRWIDCG-NVTCPKTQQKLEHLTLTP  309 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv----------~~~~G~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~~l~p  309 (636)
                      ++=.|.+|++-+.+.|          .++|||.|---||..|+--| ..|||-|++..+...+..
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfs  287 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFS  287 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhcc
Confidence            4557999988876655          68999999999999999766 468999988776544433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=83.66  E-value=1.9  Score=28.47  Aligned_cols=28  Identities=29%  Similarity=0.503  Sum_probs=24.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          560 IPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       560 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      +|.+++++.+.++++|..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999998875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=83.50  E-value=2.3  Score=46.28  Aligned_cols=177  Identities=18%  Similarity=0.100  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHhhhCcchHHHH-HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-----Cc---hhHHHHhcCchHH
Q 006669          410 TQEHAVTAILNLSIYENNKGLI-MLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-----DE---NKIIIGASGAIPA  480 (636)
Q Consensus       410 ~~e~Av~aL~nLs~~~~~k~~I-~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-----~~---~~~~i~~~g~i~~  480 (636)
                      +...|+.++.-+..++..+... .-..+...+...|.+..-..++.+++++.|++..     +.   ....+.. -.+..
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~  485 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLK  485 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHH
Confidence            3455666666666666654433 3456677777777776778899999999998531     11   1111110 11222


Q ss_pred             HHhhhc---cCCHHHHHHHHHHHHhhhhccc----hHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHH
Q 006669          481 LVDLLQ---NGSTRGRKDAATALFNLCIYMG----NKGRAVRAGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKI  552 (636)
Q Consensus       481 Lv~LL~---~~~~~~k~~A~~aL~nL~~~~~----n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~  552 (636)
                      ++..-.   -...+++.+|..+|.|+...-.    ---..+..|.+..+..-. ......++.+|+.++.||-+++...-
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l  565 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL  565 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence            222211   1256889999999999864321    111122233333333332 23577889999999999999876522


Q ss_pred             H-H-HhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhc
Q 006669          553 A-I-VKASTIPVLIVLLRT-GLPRNKENAAAILLSLCK  587 (636)
Q Consensus       553 ~-i-~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~  587 (636)
                      . + ....+++.|..++.+ .+-++|-+|+++|..-..
T Consensus       566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            2 1 223457888888875 567888888888875554

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=83.05  E-value=65  Score=36.34  Aligned_cols=112  Identities=19%  Similarity=0.146  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhcCCC----HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch
Q 006669          352 VAIEALVRKLSSRS----VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN  427 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~----~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~  427 (636)
                      -+.-.|++.+.+..    .-....-++.+..+.+.++..+..+     .|.|-.-|++.-..++-+++.++..++...- 
T Consensus       223 ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-  296 (898)
T COG5240         223 MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV-  296 (898)
T ss_pred             HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-
Confidence            34556666665543    1112223445555666666555443     3555556665556677778887777765210 


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI  470 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~  470 (636)
                      -.... ...+..|-.+|++.....|-.|.++|-.|+.....+.
T Consensus       297 ~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv  338 (898)
T COG5240         297 GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV  338 (898)
T ss_pred             CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence            11111 1245666667778888889999999999987654433

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.93  E-value=83  Score=36.81  Aligned_cols=69  Identities=22%  Similarity=0.206  Sum_probs=48.2

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc
Q 006669          395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE  467 (636)
Q Consensus       395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~  467 (636)
                      ..+.+=++|++....+..+|..++.+|...  +-..+.  -++..|-.++.+...-.|-.|.++|..++....
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P  314 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP  314 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence            345555667777888888888888888641  111111  156666677778888899999999999987654

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=82.75  E-value=52  Score=38.96  Aligned_cols=225  Identities=18%  Similarity=0.141  Sum_probs=132.6

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHH--HhCChHHH
Q 006669          364 RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIM--LAGAIPSI  440 (636)
Q Consensus       364 ~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~--~~G~I~~L  440 (636)
                      ..+....+|...+...+.....+...+..  .....++.+.- ..+.++..|+.++.-.++.    ..+.  ..+.+..|
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~L  535 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDGL  535 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHHHH
Confidence            34555556666666555543333322211  12333444433 3344556666665554421    1111  24556666


Q ss_pred             HHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc--cCCHHHHHHHHHHHHhhhhccchHHHHHHhch
Q 006669          441 VQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ--NGSTRGRKDAATALFNLCIYMGNKGRAVRAGI  518 (636)
Q Consensus       441 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~--~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~  518 (636)
                      ..+....+.++..--..+|......+.......++-..|..+.+.-  +.+|.+...+-..+..|+....|...+.+ -.
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~  614 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RL  614 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HH
Confidence            6666556677777777788877666554444455556666666543  34566777777777777765555544444 37


Q ss_pred             HHHHHHHhcCCC----HHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHH-HcCCCHHHHHHHHHHHHHhhccChHH
Q 006669          519 ISALLKMLTDSR----NCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVL-LRTGLPRNKENAAAILLSLCKRDTEN  592 (636)
Q Consensus       519 v~~Lv~lL~~~~----~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~l-L~~~s~~~ke~A~~~L~~L~~~~~~~  592 (636)
                      +|.++..|..+.    .++...|+.+|..+..+ |.-.....-.-++|.+.+. +++++..+-+++-.+|..+...+.+.
T Consensus       615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq  694 (1005)
T KOG2274|consen  615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ  694 (1005)
T ss_pred             HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence            999999996644    77888889999877663 2222222222456777664 56677888889999999888776654


Q ss_pred             HHH
Q 006669          593 LAC  595 (636)
Q Consensus       593 ~~~  595 (636)
                      ...
T Consensus       695 ~~t  697 (1005)
T KOG2274|consen  695 LLT  697 (1005)
T ss_pred             HHh
Confidence            443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=82.74  E-value=13  Score=36.81  Aligned_cols=146  Identities=12%  Similarity=0.073  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhc---C--cHHHHHHHHHHHHHccCCCc-hh-HHHHhcCchHHHHh
Q 006669          411 QEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRA---G--SMEARENAAATLFSLSLLDE-NK-IIIGASGAIPALVD  483 (636)
Q Consensus       411 ~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~---~--~~e~~~~Aa~~L~~Ls~~~~-~~-~~i~~~g~i~~Lv~  483 (636)
                      .-+|+.+|--++.+++.|..+.++..--.+-..|..   .  -.-.|..+.+++..|..+++ +. ..+.....+|-++.
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            456777777788899999888876543334444432   2  24567889999999987764 33 33445589999999


Q ss_pred             hhccCCHHHHHHHHHHHHhhhhccchHHHHHH--------hchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHHHH
Q 006669          484 LLQNGSTRGRKDAATALFNLCIYMGNKGRAVR--------AGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAI  554 (636)
Q Consensus       484 LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~--------~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i  554 (636)
                      ++..|+.-.+.-|+..+..+..++.+-+.+.+        ..++..++.-+ +.++..+...++.+-..||..|..|..+
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL  276 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL  276 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence            99999988888888887777666655433322        12333333333 3477888899999999999999988876


Q ss_pred             Hh
Q 006669          555 VK  556 (636)
Q Consensus       555 ~~  556 (636)
                      ..
T Consensus       277 ~~  278 (315)
T COG5209         277 SS  278 (315)
T ss_pred             hc
Confidence            43

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=82.54  E-value=0.79  Score=44.91  Aligned_cols=54  Identities=20%  Similarity=0.256  Sum_probs=41.5

Q ss_pred             cccCccchhhccCCee-cCCCchhhhHHHHHHHcC-CCCCCC--CCCcccccCCcccc
Q 006669          257 DFLCPISLELMRDPVI-VATGQTYERSYIQRWIDC-GNVTCP--KTQQKLEHLTLTPN  310 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~-~~~~cP--~~~~~l~~~~l~pn  310 (636)
                      +.+||||.+..--|.+ ..|+|.|+|..|+++... ....||  .|.+......++..
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d  246 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCD  246 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhh
Confidence            4699999999999987 689999999999999873 234588  46666655555543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.32  E-value=0.92  Score=47.69  Aligned_cols=52  Identities=19%  Similarity=0.381  Sum_probs=35.6

Q ss_pred             CcccCccchhhc---cCCe-ecCCCchhhhHHHHHHHcCCC--CCCCCCCcccccCCc
Q 006669          256 ADFLCPISLELM---RDPV-IVATGQTYERSYIQRWIDCGN--VTCPKTQQKLEHLTL  307 (636)
Q Consensus       256 ~~f~CPis~~~m---~dPv-~~~~G~t~~r~~I~~w~~~~~--~~cP~~~~~l~~~~l  307 (636)
                      -.-.|.||-+..   +|-- +-.|||+|.--|.++||....  .+||+|+..++....
T Consensus         3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~   60 (465)
T KOG0827|consen    3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV   60 (465)
T ss_pred             ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence            344688886654   2211 234999999999999997432  579999955554443

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=82.30  E-value=0.72  Score=48.50  Aligned_cols=48  Identities=27%  Similarity=0.436  Sum_probs=40.5

Q ss_pred             cCccchhhccCCeecCCCchhhhHHHHHHHcC-CCCCCCCCCcccccCC
Q 006669          259 LCPISLELMRDPVIVATGQTYERSYIQRWIDC-GNVTCPKTQQKLEHLT  306 (636)
Q Consensus       259 ~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~  306 (636)
                      +|-||-+==+|--+=||||-.|-.|+..|.++ ++.+||.|+-.+..+.
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            69999988888888899999999999999964 4789999987665433

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=80.68  E-value=0.48  Score=54.79  Aligned_cols=48  Identities=19%  Similarity=0.381  Sum_probs=39.5

Q ss_pred             ccCccchhhccCCeecCCCchhhhHHHHHHHcC-CCCCCCCCCcccccCC
Q 006669          258 FLCPISLELMRDPVIVATGQTYERSYIQRWIDC-GNVTCPKTQQKLEHLT  306 (636)
Q Consensus       258 f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~~  306 (636)
                      +.|++|.+ ..+||+++|||-+|+.|+.+-++. +...||.|+..+....
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            89999999 889999999999999999888763 3346999877665433

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=80.49  E-value=8  Score=36.33  Aligned_cols=144  Identities=17%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             HHHHHHhhc--CCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHH
Q 006669          396 IPVLVNLLT--TDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIII  472 (636)
Q Consensus       396 i~~Lv~lL~--s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i  472 (636)
                      +..++..|.  ...++++-.+.-++..+-  +..+....+ -+-..+-..+..++.+....+..++..|-... +-...+
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            344555554  345667777777776663  222332222 11223333444445556677777777775443 334444


Q ss_pred             H-hcCchHHHHhhhc--cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcC-CCHH-HHHHHHHHHHH
Q 006669          473 G-ASGAIPALVDLLQ--NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD-SRNC-MVDEALTILSV  543 (636)
Q Consensus       473 ~-~~g~i~~Lv~LL~--~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~-~~~~-~~~~Al~~L~~  543 (636)
                      . ..|.++.++.++.  ..+......++.+|..=|. ++++...+...+++.|-++++. .++. ++..|+-+|..
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            4 4599999999998  5567777777777766554 5566666666679999999954 4454 56666666543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	636
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		2e-25
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-11
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-09
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		1e-05
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		3e-11
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-09
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-08
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		5e-08
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-08
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		2e-06
3ifq_A	553	Interction Of Plakoglobin And Beta-Catenin With Des		6e-06
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-05
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		2e-05
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		2e-05
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		2e-05
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		2e-05
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		3e-05
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		4e-05
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		6e-05
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		8e-05
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		8e-05
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		8e-05
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		9e-05
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		9e-05
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		9e-05
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		9e-05
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		9e-05
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		1e-04
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		1e-04
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		1e-04
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		1e-04
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		6e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLR 314
           P  F CPISLELM+DPVIV+TGQTYERS IQ+W+D G+ TCPK+Q+ L H  LTPNYVL+
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 315 SLISQWCTMHNIE 327
           SLI+ WC  + IE
Sbjct: 66  SLIALWCESNGIE 78

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 4/220 (1%)
Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
           +E LV+ L+S   E ++ A  ++  ++         I DAG + VLV LLT+ D   Q+ 
Sbjct: 4   VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 414 AVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSL-SLLDENKII 471
           A  A+ N++   +     I+ AG +  +V++L +   E ++ AA  L ++ S  DE    
Sbjct: 64  AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123
Query: 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKMLTDSR 530
           I  +G +  LV LL +  +  +K+AA AL N+        +A V AG +  L+K+LT + 
Sbjct: 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 183
Query: 531 NCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRT 569
           + +  EA   L+ +AS P + I AIV A  + VL  LL +
Sbjct: 184 SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 4/234 (1%)
Query: 399 LVNLLTTDDVMTQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAA 457
           LV LLT+ D  TQ+ A   +  ++    +    I+ AG +  +V++L +   E ++ AA 
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 458 TLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VR 515
            L ++ S  DE    I  +G +  LV LL +  +  +K+AA AL N+        +A V 
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126
Query: 516 AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRN 574
           AG +  L+K+LT + + +  EA   L+ +AS P+  I AIV A  + VL+ LL +     
Sbjct: 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 186
Query: 575 KENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
           ++ AA  L ++    T  +  I   G V  L +L  S     +++A   LE+++
Sbjct: 187 QKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 475 SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKMLTDSRNCM 533
           +G +  LV LL +  +  +K+AA AL N+        +A V AG +  L+K+LT + + +
Sbjct: 43  AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 102
Query: 534 VDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTEN 592
             EA   L+ +AS P+  I AIV A  + VL+ LL +     ++ AA  L ++     E 
Sbjct: 103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162
Query: 593 LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP 631
           +  I   G V  L +L  S     +++A   L ++   P
Sbjct: 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 125/239 (52%), Gaps = 8/239 (3%)
Query: 396 IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL--IMLAGAIPSIVQILRAGSMEARE 453
           +P +   L +DD M ++ + T   +  + + N+ +  ++ AGA+P++VQ+L + + +  +
Sbjct: 14  LPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 454 NAAATLFSLSLLDENKI--IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511
            A   L +++     +I  +I A GA+PALV LL + + +  ++A  AL N+      + 
Sbjct: 73  EALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 512 RAV-RAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRT 569
           +AV  AG + AL+++L+     ++ EAL  LS +AS    +I A++ A  +P L+ LL +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
              +  + A   L ++     E    +   GA+  L +L     E+ +++A   LE L+
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 7/197 (3%)
Query: 437 IPSIVQILRAGSMEARENAAAT-LFSLSLLDENKIIIGA--SGAIPALVDLLQNGSTRGR 493
           +P + Q L +  M  +E  +AT  FS  L D N+ I     +GA+PALV LL + + +  
Sbjct: 14  LPQMTQQLNSDDM--QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 494 KDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI 552
           ++A  AL N+      + +AV  AG + AL+++L+     ++ EAL  LS +AS    +I
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 553 -AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS 611
            A++ A  +P L+ LL +   +  + A   L ++     E    +   GA+  L +L   
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 612 GTERAKRKATSLLEHLR 628
             E+ +++A   LE L+
Sbjct: 192 ENEKIQKEAQEALEKLQ 208

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 107/195 (54%), Gaps = 5/195 (2%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVT 416
           +V++L+S   +E ++A+ ++  ++    +    + DAGA+P LV LL++ +    + A+ 
Sbjct: 17  MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 417 AILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI--IIG 473
           A+ N++   N +   ++ AGA+P++VQ+L + + +  + A   L +++     +I  +I 
Sbjct: 77  ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNC 532
           A GA+PALV LL + + +  ++A  AL N+      + +AV+ AG +  L ++ +     
Sbjct: 137 A-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195
Query: 533 MVDEALTILSVLASN 547
           +  EA   L  L S+
Sbjct: 196 IQKEAQEALEKLQSH 210

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 475 SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDSRNCM 533
           +GA+PALV LL + + +  ++A  AL N+      + +AV  AG + AL+++L+     +
Sbjct: 53  AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 534 VDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTEN 592
           + EAL  LS +AS    +I A++ A  +P L+ LL +   +  + A   L ++     E 
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172
Query: 593 LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR 628
              +   GA+  L +L     E+ +++A   LE L+
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 4/178 (2%)
Query: 357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVT 416
           +V++L+S   +E ++A+ ++  ++    +    + DAGA+P LV LL++ +    + A+ 
Sbjct: 17  MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 417 AILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI--IIG 473
           A+ N++   N +   ++ AGA+P++VQ+L + + +  + A   L +++     +I  +I 
Sbjct: 77  ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRN 531
           A GA+PALV LL + + +  ++A  AL N+      + +AV+       L+ L  S N
Sbjct: 137 A-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 134/307 (43%), Gaps = 27/307 (8%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 176 QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSG 234
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LVN+L +  D V+   HA+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 235 GIPALVNMLGSPVDSVLF--HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 293 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVL 566
             NK   V AG + AL   LTD    +V   L  L  L+       A  K   +  L+  
Sbjct: 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD------AATKQEGMEGLLGT 403
Query: 567 LRTGLPRNKEN----AAAILLSLCKRDTENLACISRLGAVIPL--TELTKSGTERAKRKA 620
           L   L  +  N    AA IL +L   + +N   + ++G +  L  T L     E     A
Sbjct: 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463
Query: 621 TSLLEHL 627
              L HL
Sbjct: 464 ICALRHL 470

>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal Cadherins Length = 553

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 127/303 (41%), Gaps = 37/303 (12%)
Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            ++AL + L+S S    +  +  +R+LS  +T    +      + +LVN L+ DDV    
Sbjct: 230 GMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGL---ESVLKILVNQLSVDDVNVLT 286
Query: 413 HAVTAILNLSIYEN-NKGLIMLAGAIPSIVQ-ILRAGSME-ARENAAATLFSLSL----- 464
            A   + NL+   + NK L+     + +++  ILRAG  +   E A   L  L+      
Sbjct: 287 CATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEA 346
Query: 465 -LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALF-NLCIYMGNKGRAVRAGIISAL 522
            + +N + +     IPA+V LL   +      A   L  NL +   N      A +I  L
Sbjct: 347 EMAQNSVRLNY--GIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRL 404
Query: 523 LKMLTDSRNC---------------------MVDEALTILSVLASNPEAKIAIVKASTIP 561
           +++L  +                        +V+     L +LA +P  ++ I + +TIP
Sbjct: 405 VQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNTIP 464
Query: 562 VLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKAT 621
           + + LL + +   +  AA +L  L + D E    I   GA  PL EL  S  E     A 
Sbjct: 465 LFVQLLYSSVENIQRVAAGVLCELAQ-DKEAADAIDAEGASAPLMELLHSRNEGTATYAA 523
Query: 622 SLL 624
           ++L
Sbjct: 524 AVL 526

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  A+   ++ L + SVE +  A+  + +++  STD R  +    A+  ++ L  ++   
Sbjct: 84  DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 143
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
               A   + NL   +  +    +++ A+P++ +++ +   E   +A   +  LS   + 
Sbjct: 144 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 203
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
            I       IP  LV+LL + ST  +  A  A+ N  I  GN  +    + AG++ AL  
Sbjct: 204 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 261
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
           +L+  +  +  EA  TI ++ A N E   A++ A+ IP L+ LL     + K+ A   + 
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 321
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
           +      +    I  L   G + PL +L +    R        LE++ K+
Sbjct: 322 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 371

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  A+   ++ L + SVE +  A+  + +++  STD R  +    A+  ++ L  ++   
Sbjct: 85  DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 144
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
               A   + NL   +  +    +++ A+P++ +++ +   E   +A   +  LS   + 
Sbjct: 145 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 204
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
            I       IP  LV+LL + ST  +  A  A+ N  I  GN  +    + AG++ AL  
Sbjct: 205 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 262
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
           +L+  +  +  EA  TI ++ A N E   A++ A+ IP L+ LL     + K+ A   + 
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 322
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
           +      +    I  L   G + PL +L +    R        LE++ K+
Sbjct: 323 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 372

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  A+   ++ L + SVE +  A+  + +++  STD R  +    A+  ++ L  ++   
Sbjct: 84  DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 143
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
               A   + NL   +  +    +++ A+P++ +++ +   E   +A   +  LS   + 
Sbjct: 144 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 203
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
            I       IP  LV+LL + ST  +  A  A+ N  I  GN  +    + AG++ AL  
Sbjct: 204 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 261
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
           +L+  +  +  EA  TI ++ A N E   A++ A+ IP L+ LL     + K+ A   + 
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 321
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
           +      +    I  L   G + PL +L +    R        LE++ K+
Sbjct: 322 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 371

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  A+   ++ L + SVE +  A+  + +++  STD R  +    A+  ++ L  ++   
Sbjct: 85  DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 144
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
               A   + NL   +  +    +++ A+P++ +++ +   E   +A   +  LS   + 
Sbjct: 145 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 204
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
            I       IP  LV+LL + ST  +  A  A+ N  I  GN  +    + AG++ AL  
Sbjct: 205 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 262
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
           +L+  +  +  EA  TI ++ A N E   A++ A+ IP L+ LL     + K+ A   + 
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAIS 322
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
           +      +    I  L   G + PL +L +    R        LE++ K+
Sbjct: 323 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 372

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  A+   ++ L + SVE +  A+  + +++  STD R  +    A+  ++ L  ++   
Sbjct: 83  DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 142
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
               A   + NL   +  +    +++ A+P++ +++ +   E   +A   +  LS   + 
Sbjct: 143 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 202
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
            I       IP  LV+LL + ST  +  A  A+ N  I  GN  +    + AG++ AL  
Sbjct: 203 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 260
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
           +L+  +  +  EA  TI ++ A N E   A++ A+ IP L+ LL     + K+ A   + 
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 320
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
           +      +    I  L   G + PL +L +    R        LE++ K+
Sbjct: 321 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 370

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  A+   ++ L + SVE +  A+  + +++  STD R  +    A+  ++ L  ++   
Sbjct: 83  DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 142
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
               A   + NL   +  +    +++ A+P++ +++ +   E   +A   +  LS   + 
Sbjct: 143 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 202
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
            I       IP  LV+LL + ST  +  A  A+ N  I  GN  +    + AG++ AL  
Sbjct: 203 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 260
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
           +L+  +  +  EA  TI ++ A N E   A++ A+ IP L+ LL     + K+ A   + 
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 320
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
           +      +    I  L   G + PL +L +    R        LE++ K+
Sbjct: 321 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKM 370

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 11/290 (3%)
Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  A+   ++ L + SVE +  A+  + +++  STD R  +    A+  ++ L  ++   
Sbjct: 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 230
Query: 410 TQEHAVTAILNLSIYENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
               A   + NL   +  +    +++ A+P++ +++ +   E   +A   +  LS   + 
Sbjct: 231 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 290
Query: 469 KIIIGASGAIPA-LVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA---VRAGIISALLK 524
            I       IP  LV+LL + ST  +  A  A+ N  I  GN  +    + AG++ AL  
Sbjct: 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN--IVTGNDLQTQVVINAGVLPALRL 348
Query: 525 MLTDSRNCMVDEA-LTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL 583
           +L+  +  +  EA  TI ++ A N E   A++ A+ IP L+ LL     + K+ A   + 
Sbjct: 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408
Query: 584 SLCKRDTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
           +      +    I  L   G + PL +L +    R        LE++ K+
Sbjct: 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 27/307 (8%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 40  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 98
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 99  GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 156
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 157 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVL 566
             NK   V AG + AL   LTD    +V   L  L  L+       A  K   +  L+  
Sbjct: 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD------AATKQEGMEGLLGT 267
Query: 567 LRTGLPRNKEN----AAAILLSLCKRDTENLACISRLGAVIPL--TELTKSGTERAKRKA 620
           L   L  +  N    AA IL +L   + +N   + ++G +  L  T L     E     A
Sbjct: 268 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327
Query: 621 TSLLEHL 627
              L HL
Sbjct: 328 ICALRHL 334

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 46  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 104
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 105 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 162
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 163 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 219
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 220 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 258

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 44  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 102
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 103 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 160
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 161 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 217
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 218 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 256

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 30  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 88
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 89  GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 146
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 147 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 203
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 204 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 242

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 28  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 86
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 87  GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 144
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 145 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 201
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 202 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 240

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 28  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 86
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 87  GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 144
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 145 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 201
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 202 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 240

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 32  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 90
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 91  GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 148
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 149 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 205
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 206 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 244

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 41  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 99
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 100 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 157
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 158 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 214
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 215 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 253

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 41  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 99
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 100 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 157
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 158 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 214
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 215 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 253

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 47  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 105
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 106 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 163
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 164 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 220
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 221 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 259

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 45  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 103
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 104 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 161
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 162 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 218
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 219 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 257

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 45  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 103
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 104 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 161
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 162 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 218
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 219 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 257

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 336 KIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +G
Sbjct: 43  QLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSG 101
Query: 395 AIPVLVNLLTT--DDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEA 451
            IP LV +L +  D V+   +A+T + NL ++ E  K  + LAG +  +V +L   +++ 
Sbjct: 102 GIPALVKMLGSPVDSVLF--YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 159
Query: 452 RENAAATLFSLSLL----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN-LCIY 506
               A T   L +L     E+K+II ASG   ALV++++  +        + +   L + 
Sbjct: 160 ---LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216
Query: 507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
             NK   V AG + AL   LTD    +V   L  L  L+
Sbjct: 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 254 IPADFLC-PISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
           IP D+LC  IS ELMR+P I  +G TY+R  I+  +       P T+  L    L PN  
Sbjct: 2   IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 60
Query: 313 LRSLI 317
           ++ +I
Sbjct: 61  MKEVI 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	636
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-66
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	9e-36
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-31
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-63
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-52
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-49
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-48
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-46
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-31
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-63
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-55
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-45
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-45
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-28
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-63
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-57
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-49
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-44
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-24
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-60
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-36
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-20
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-13
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-58
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-36
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-25
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-56
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-37
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-37
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-34
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-31
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-27
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-47
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-37
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-31
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-27
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-21
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-21
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-11
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-44
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-40
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-29
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-43
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-32
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-32
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-31
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-28
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-19
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-11
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	1e-42
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-38
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-22
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-20
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-20
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-17
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	8e-38
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-35
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-31
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-20
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-19
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-32
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-16
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-12
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-04
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-31
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	1e-30
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-30
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-30
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-21
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-09
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	9e-29
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	6e-22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	8e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-15
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	1e-17
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-15
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	1e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-04
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	3e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	8e-12
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	9e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-09
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	3e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	8e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	2e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-06
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	5e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	6e-05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	7e-05
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	2e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	2e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	3e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	8e-04

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  215 bits (550), Expect = 8e-66
 Identities = 60/239 (25%), Positives = 122/239 (51%), Gaps = 4/239 (1%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            +  + ++L+S  ++E+ +A  +   +     +    + DAGA+P LV LL++ +    +
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 413 HAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKI 470
            A+ A+ N++         ++ AGA+P++VQ+L + + +  + A   L +++   +E   
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKMLTDS 529
            +  +GA+PALV LL + + +  ++A  AL N+      + +A + AG + AL+++L+  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 192

Query: 530 RNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587
              ++ EAL  LS +AS   E K A+ +A  +  L  L      + ++ A   L  L  
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  134 bits (339), Expect = 9e-36
 Identities = 52/198 (26%), Positives = 104/198 (52%), Gaps = 3/198 (1%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
           A+ ALV+ LSS + +  + A+  + +++    +    + DAGA+P LV LL++ +    +
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114

Query: 413 HAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKI 470
            A+ A+ N++         ++ AGA+P++VQ+L + + +  + A   L +++   +E   
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDS 529
            +  +GA+PALV LL + + +  ++A  AL N+      + +AV  AG +  L ++ +  
Sbjct: 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234

Query: 530 RNCMVDEALTILSVLASN 547
              +  EA   L  L S+
Sbjct: 235 NEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  122 bits (307), Expect = 2e-31
 Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 3/206 (1%)

Query: 425 ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGASGAIPALVD 483
             +         +P + Q L +  M+ + +A      +    +E    +  +GA+PALV 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61

Query: 484 LLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILS 542
           LL + + +  ++A  AL N+      + +AV  AG + AL+++L+     ++ EAL  LS
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 543 VLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGA 601
            +AS   E   A++ A  +P L+ LL +   +  + A   L ++     E +  +   GA
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181

Query: 602 VIPLTELTKSGTERAKRKATSLLEHL 627
           +  L +L  S  E+  ++A   L ++
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNI 207

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  221 bits (565), Expect = 6e-63
 Identities = 74/299 (24%), Positives = 127/299 (42%), Gaps = 9/299 (3%)

Query: 335 GKIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADA 393
            ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +
Sbjct: 175 HQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKS 233

Query: 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEAR 452
           G IP LVN+L +       HA+T + NL ++ E  K  + LAG +  +V +L   +++  
Sbjct: 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 293

Query: 453 ENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRG-RKDAATALFNLCIYMGNK 510
                 L  L+  + E+K+II ASG   ALV++++  +        +  L  L +   NK
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353

Query: 511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG 570
              V AG + AL   LTD    +V   L  L  L+     +  +     +  L+ LL + 
Sbjct: 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL--LGTLVQLLGSD 411

Query: 571 LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL--TKSGTERAKRKATSLLEHL 627
                  AA IL +L   + +N   + ++G +  L          E     A   L HL
Sbjct: 412 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  191 bits (486), Expect = 3e-52
 Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 7/279 (2%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQ 411
           AI  L + L+         A   +  LSK+      I+     +  +V  +  T+DV T 
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210

Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KI 470
                 + NLS +      I  +G IP++V +L +       +A  TL +L L  E  K+
Sbjct: 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALLKML-TD 528
            +  +G +  +V LL   + +        L  L      +K   + +G   AL+ ++ T 
Sbjct: 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 330

Query: 529 SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588
           +   ++     +L VL+     K AIV+A  +  L + L     R  +N    L +L   
Sbjct: 331 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 390

Query: 589 DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
            T+        G +  L +L  S        A  +L +L
Sbjct: 391 ATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 426

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  183 bits (466), Expect = 2e-49
 Identities = 74/359 (20%), Positives = 137/359 (38%), Gaps = 13/359 (3%)

Query: 282 SYIQRWIDCGNVTCP-----KTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGK 336
           SY+   I  G  T       K   + + +     Y      +Q      +    G     
Sbjct: 29  SYLDSGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMT 88

Query: 337 IKK--SDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD-- 392
             +      F +   + + I +     +  +  +R A  +++   +  +  N    A+  
Sbjct: 89  RAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELA 148

Query: 393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML-AGAIPSIVQILRAGS-ME 450
             AIP L  LL  +D +    A   +  LS  E ++  IM     + +IV+ ++  + +E
Sbjct: 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 208

Query: 451 ARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK 510
                + TL +LS   E  + I  SG IPALV++L +        A T L NL ++    
Sbjct: 209 TARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268

Query: 511 GRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLA-SNPEAKIAIVKASTIPVLIVLLR 568
             AVR AG +  ++ +L  +    +      L +LA  N E+K+ I+ +     L+ ++R
Sbjct: 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 328

Query: 569 TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
           T          + +L +    + N   I   G +  L       ++R  +     L +L
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  179 bits (454), Expect = 6e-48
 Identities = 63/283 (22%), Positives = 112/283 (39%), Gaps = 10/283 (3%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMT-Q 411
            ++ +V  L+  +V+        ++ L+  + ++++II  +G    LVN++ T       
Sbjct: 277 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336

Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKII 471
                 +  LS+  +NK  I+ AG + ++   L   S    +N   TL +LS  D     
Sbjct: 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 394

Query: 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALLKMLTDS- 529
            G  G +  LV LL +        AA  L NL      NK    + G I AL++ +  + 
Sbjct: 395 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 454

Query: 530 -RNCMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584
            R  + + A+  L  L S       A+ A+     +PV++ LL          A   L+ 
Sbjct: 455 DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514

Query: 585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
                  N A +   GA+  L +L     +  +R+ +      
Sbjct: 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  175 bits (445), Expect = 1e-46
 Identities = 64/282 (22%), Positives = 110/282 (39%), Gaps = 27/282 (9%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL--TTDDVMT 410
            +  LV+ L S  +     A   + +L+  +  N++++   G I  LV  +    D    
Sbjct: 400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 459

Query: 411 QEHAVTAILNLSI----YENNKGLIMLAGAIPSIVQILRAGSMEARENAA-ATLFSLSLL 465
            E A+ A+ +L+      E  +  + L   +P +V++L   S      A    + +L+L 
Sbjct: 460 TEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519

Query: 466 DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKM 525
             N   +   GAIP LV LL       ++  +          G +               
Sbjct: 520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE------------ 567

Query: 526 LTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585
                  +V+     L +LA +   +I I   +TIP+ + LL + +   +  AA +L  L
Sbjct: 568 -------IVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620

Query: 586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
             +D E    I   GA  PLTEL  S  E     A ++L  +
Sbjct: 621 A-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  128 bits (322), Expect = 5e-31
 Identities = 53/261 (20%), Positives = 86/261 (32%), Gaps = 31/261 (11%)

Query: 353 AIEALVRKLSSRSVEE--RRAAVAEIRSLSKRSTDN---RIIIADAGAIPVLVNLLTTDD 407
            IEALVR +      E     A+  +R L+ R  D    +  +     +PV+V LL    
Sbjct: 442 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501

Query: 408 VMTQEHAVTAIL-NLSIYENNKGLIMLAGAIPSIVQILRAGSMEAR-------------- 452
                 A   ++ NL++   N   +   GAIP +VQ+L     + +              
Sbjct: 502 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 561

Query: 453 --------ENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504
                   E     L  L+    N+I+I     IP  V LL +     ++ AA  L  L 
Sbjct: 562 GVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621

Query: 505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLI 564
                       G  + L ++L      +   A  +L  ++ +        K      L 
Sbjct: 622 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY---KKRLSVELT 678

Query: 565 VLLRTGLPRNKENAAAILLSL 585
             L    P        + L +
Sbjct: 679 SSLFRTEPMTWNETGDLGLDI 699

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  216 bits (551), Expect = 8e-63
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 9/299 (3%)

Query: 335 GKIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADA 393
            ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +
Sbjct: 42  HQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKS 100

Query: 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEAR 452
           G IP LV +L +       +A+T + NL ++ E  K  + LAG +  +V +L   +++  
Sbjct: 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 160

Query: 453 ENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAAT-ALFNLCIYMGNK 510
                 L  L+  + E+K+II ASG   ALV++++  +        +  L  L +   NK
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220

Query: 511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG 570
              V AG + AL   LTD    +V   L  L  L+     +  +     +  L+ LL + 
Sbjct: 221 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSD 278

Query: 571 LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL--TKSGTERAKRKATSLLEHL 627
                  AA IL +L   + +N   + ++G +  L          E     A   L HL
Sbjct: 279 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  195 bits (498), Expect = 2e-55
 Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 7/279 (2%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQ 411
           AI  L + L+         A   +  LSK+      I+     +  +V  +  T+DV T 
Sbjct: 18  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKI 470
                 + NLS +      I  +G IP++V++L +        A  TL +L L  E  K+
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALLKML-TD 528
            +  +G +  +V LL   + +        L  L      +K   + +G   AL+ ++ T 
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197

Query: 529 SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588
           +   ++     +L VL+     K AIV+A  +  L + L     R  +N    L +L   
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257

Query: 589 DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
            T+        G +  L +L  S        A  +L +L
Sbjct: 258 ATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 293

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  167 bits (425), Expect = 3e-45
 Identities = 60/249 (24%), Positives = 101/249 (40%), Gaps = 4/249 (1%)

Query: 383 STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML-AGAIPSIV 441
                       AIP L  LL  +D +    A   +  LS  E ++  IM     + +IV
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 442 QILRAGS-MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
           + ++  + +E     A TL +LS   E  + I  SG IPALV +L +        A T L
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125

Query: 501 FNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLA-SNPEAKIAIVKAS 558
            NL ++      AVR AG +  ++ +L  +    +      L +LA  N E+K+ I+ + 
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 185

Query: 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKR 618
               L+ ++RT          + +L +    + N   I   G +  L       ++R  +
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245

Query: 619 KATSLLEHL 627
                L +L
Sbjct: 246 NCLWTLRNL 254

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  167 bits (425), Expect = 3e-45
 Identities = 65/282 (23%), Positives = 109/282 (38%), Gaps = 27/282 (9%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL--TTDDVMT 410
            +  LV+ L S  +     A   + +L+  +  N++++   G I  LV  +    D    
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 411 QEHAVTAILNLSI----YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS-LSLL 465
            E A+ A+ +L+      E  +  + L   +P +V++L   S      A   L   L+L 
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 466 DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKM 525
             N   +   GAIP LV LL       ++  +          G +   +           
Sbjct: 387 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI----------- 435

Query: 526 LTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL 585
                   V+     L +LA +   +I I   +TIP+ + LL + +   +  AA +L  L
Sbjct: 436 --------VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487

Query: 586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
            + D E    I   GA  PLTEL  S  E     A ++L  +
Sbjct: 488 AQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  118 bits (298), Expect = 2e-28
 Identities = 47/221 (21%), Positives = 78/221 (35%), Gaps = 28/221 (12%)

Query: 353 AIEALVRKLSSRSVEE--RRAAVAEIRSLSKRSTDNRII---IADAGAIPVLVNLLTTDD 407
            IEALVR +      E     A+  +R L+ R  +  +    +     +PV+V LL    
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 408 VMTQEHAVTAIL-NLSIYENNKGLIMLAGAIPSIVQILRAGSMEAR-------------- 452
                 A   ++ NL++   N   +   GAIP +VQ+L     + +              
Sbjct: 369 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 453 --------ENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504
                   E     L  L+    N+I+I     IP  V LL +     ++ AA  L  L 
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488

Query: 505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA 545
                       G  + L ++L      +   A  +L  ++
Sbjct: 489 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  105 bits (264), Expect = 4e-24
 Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 2/168 (1%)

Query: 462 LSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIIS 520
           ++L++       A+ AIP L  LL +        AA  +  L     ++   +R   ++S
Sbjct: 3   VNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 62

Query: 521 ALLKMLTDSRNCMV-DEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAA 579
           A+++ + ++ +          L  L+ + E  +AI K+  IP L+ +L + +      A 
Sbjct: 63  AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122

Query: 580 AILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
             L +L          +   G +  +  L      +     T  L+ L
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  218 bits (557), Expect = 9e-63
 Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 9/299 (3%)

Query: 335 GKIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADA 393
            ++ K + S   +      + A+VR + ++  VE  R     + +LS    +  + I  +
Sbjct: 39  HQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKS 97

Query: 394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEAR 452
           G IP LV +L +       +A+T + NL ++ E  K  + LAG +  +V +L   +++  
Sbjct: 98  GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 157

Query: 453 ENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRG-RKDAATALFNLCIYMGNK 510
                 L  L+  + E+K+II ASG   ALV++++  +        +  L  L +   NK
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 217

Query: 511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG 570
              V AG + AL   LTD    +V   L  L  L+     +  +     +  L+ LL + 
Sbjct: 218 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EGLLGTLVQLLGSD 275

Query: 571 LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL--TKSGTERAKRKATSLLEHL 627
                  AA IL +L   + +N   + ++G +  L          E     A   L HL
Sbjct: 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  202 bits (514), Expect = 9e-57
 Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 7/279 (2%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQ 411
           AI  L + L+         A   +  LSK+      I+     +  +V  +  T+DV T 
Sbjct: 15  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KI 470
                 + NLS +      I  +G IP++V++L +        A  TL +L L  E  K+
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALLKML-TD 528
            +  +G +  +V LL   + +        L  L      +K   + +G   AL+ ++ T 
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194

Query: 529 SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588
           +   ++     +L VL+     K AIV+A  +  L + L     R  +N    L +L   
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254

Query: 589 DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
            T+        G +  L +L  S        A  +L +L
Sbjct: 255 ATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  180 bits (458), Expect = 6e-49
 Identities = 63/291 (21%), Positives = 116/291 (39%), Gaps = 10/291 (3%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMT-Q 411
            ++ +V  L+  +V+        ++ L+  + ++++II  +G    LVN++ T       
Sbjct: 141 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 200

Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKII 471
                 +  LS+  +NK  I+ AG + ++   L   S    +N   TL +LS  D     
Sbjct: 201 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQ 258

Query: 472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALLKMLTDS- 529
            G  G +  LV LL +        AA  L NL      NK    + G I AL++ +  + 
Sbjct: 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 318

Query: 530 -RNCMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS 584
            R  + + A+  L  L S       A+ A+     +PV++ LL          A   L+ 
Sbjct: 319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 378

Query: 585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQ 635
                  N A +   GA+  L +L     +  +R+ +      + +  ++ 
Sbjct: 379 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  165 bits (420), Expect = 6e-44
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 4/242 (1%)

Query: 390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML-AGAIPSIVQILRAGS 448
                AIP L  LL  +D +    A   +  LS  E ++  IM     + +IV+ ++  +
Sbjct: 10  ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69

Query: 449 -MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507
            +E     A TL +LS   E  + I  SG IPALV +L +        A T L NL ++ 
Sbjct: 70  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129

Query: 508 GNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLA-SNPEAKIAIVKASTIPVLIV 565
                AVR AG +  ++ +L  +    +      L +LA  N E+K+ I+ +     L+ 
Sbjct: 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 189

Query: 566 LLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLE 625
           ++RT          + +L +    + N   I   G +  L       ++R  +     L 
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249

Query: 626 HL 627
           +L
Sbjct: 250 NL 251

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  139 bits (351), Expect = 6e-35
 Identities = 54/288 (18%), Positives = 98/288 (34%), Gaps = 28/288 (9%)

Query: 353 AIEALVRKLSSRSVEE--RRAAVAEIRSLSKRSTDN---RIIIADAGAIPVLVNLLTTDD 407
            IEALVR +      E     A+  +R L+ R  +    +  +     +PV+V LL    
Sbjct: 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365

Query: 408 VMTQEHAVTAIL-NLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD 466
                 A   ++ NL++   N   +   GAIP +VQ+L     + +   +        ++
Sbjct: 366 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425

Query: 467 ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKML 526
             ++     G                      AL  L   + N+        I   +++L
Sbjct: 426 GVRMEEIVEG-------------------CTGALHILARDVHNRIVIRGLNTIPLFVQLL 466

Query: 527 TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586
                 +   A  +L  LA + EA  AI        L  LL +        AAA+L  + 
Sbjct: 467 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526

Query: 587 KRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQ 634
           +   ++     +  +V   + L ++        A   L+   +   L 
Sbjct: 527 EDKPQD---YKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLG 571

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  105 bits (262), Expect = 9e-24
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 2/166 (1%)

Query: 464 LLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISAL 522
           L++       A+ AIP L  LL +        AA  +  L     ++   +R   ++SA+
Sbjct: 2   LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61

Query: 523 LKMLTDSRNCMV-DEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAI 581
           ++ + ++ +          L  L+ + E  +AI K+  IP L+ +L + +      A   
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121

Query: 582 LLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
           L +L          +   G +  +  L      +     T  L+ L
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  203 bits (519), Expect = 4e-60
 Identities = 58/314 (18%), Positives = 127/314 (40%), Gaps = 27/314 (8%)

Query: 340 SDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVL 399
            +  +         ++     + +    +   AV  +  LS    ++R  + + G +  +
Sbjct: 20  CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAI 78

Query: 400 VNLLTTD-----------DVMTQEHAVTAILNLSIY-ENNKGLIM-LAGAIPSIVQILRA 446
             LL  D            +  + +A  A+ NL+     NK  +  + G + ++V  L++
Sbjct: 79  AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 138

Query: 447 GSMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLLQNGSTRG-RKDAATALFNL 503
            S + ++  A+ L +LS      +K  +   G++ AL++           K   +AL+NL
Sbjct: 139 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198

Query: 504 CIYM-GNKGRAVRA-GIISALLKMLT----DSRNCMVDEALTIL----SVLASNPEAKIA 553
             +   NK       G ++ L+  LT     +   +++    IL    S++A+N + +  
Sbjct: 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258

Query: 554 IVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGT 613
           + + + +  L+  L++       NA   L +L  R+ ++   +  +GAV  L  L  S  
Sbjct: 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 318

Query: 614 ERAKRKATSLLEHL 627
           +     + + L +L
Sbjct: 319 KMIAMGSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  139 bits (351), Expect = 1e-36
 Identities = 49/266 (18%), Positives = 103/266 (38%), Gaps = 54/266 (20%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLT-TDDVMT 410
            + ALV +L S S + ++   + +R+LS R   +++  + + G++  L+          T
Sbjct: 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 187

Query: 411 QEHAVTAILNLSIY--ENNKGLIMLAGAIPSIVQIL----RAGSMEARENAAATLFSLSL 464
            +  ++A+ NLS +  EN   +  + GA+  +V  L    +  ++   E+    L ++S 
Sbjct: 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247

Query: 465 L----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIIS 520
           L    ++++ I+  +  +  L+  L++ S     +A   L+NL                 
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS---------------- 291

Query: 521 ALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA 580
                                   A NP+ + A+     + +L  L+ +        +AA
Sbjct: 292 ------------------------ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327

Query: 581 ILLSLCKRDT--ENLACISRLGAVIP 604
            L +L          A I   G+ +P
Sbjct: 328 ALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 92.2 bits (229), Expect = 2e-20
 Identities = 21/135 (15%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSK---RSTDNRIIIADAGAIPVLVNLLTTDDVMT 410
           +  L  +  + ++    +    +R++S     + D+R I+ +   +  L+  L +  +  
Sbjct: 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279

Query: 411 QEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK 469
             +A   + NLS     ++  +   GA+  +  ++ +        +AA L +L      K
Sbjct: 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339

Query: 470 I----IIGASGAIPA 480
                I+    ++P+
Sbjct: 340 YKDANIMSPGSSLPS 354

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 69.9 bits (171), Expect = 5e-13
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            ++ L++ L S S+     A   + +LS R+  ++  + D GA+ +L NL+ +   M   
Sbjct: 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 323

Query: 413 HAVTAILNLSIYENNK----GLIMLAGAIPS 439
            +  A+ NL      K     ++    ++PS
Sbjct: 324 GSAAALRNLMANRPAKYKDANIMSPGSSLPS 354

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 546 SNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPL 605
                +        +      +   +      A  +L+ L   D E+   ++ LG +  +
Sbjct: 20  CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAI 78

Query: 606 TELTKSGTERAKRKATSLLEHLRK 629
            EL +   E            LR+
Sbjct: 79  AELLQVDCEMYGLTNDHYSITLRR 102

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  192 bits (490), Expect = 9e-58
 Identities = 49/198 (24%), Positives = 105/198 (53%), Gaps = 3/198 (1%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            +  +V++L+S   +E ++A+ ++  ++    +    + DAGA+P LV LL++ +    +
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 413 HAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKI 470
            A+ A+ N++         ++ AGA+P++VQ+L + + +  + A   L +++   +E   
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDS 529
            +  +GA+PALV LL + + +  ++A  AL N+      + +AV+ AG +  L ++ +  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192

Query: 530 RNCMVDEALTILSVLASN 547
              +  EA   L  L S+
Sbjct: 193 NEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  133 bits (337), Expect = 5e-36
 Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 42/244 (17%)

Query: 386 NRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQIL 444
           +         +P +V  L + D    + A+  +  ++         ++ AGA+P++VQ+L
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 445 RAGSMEARENAAATLFSLSLLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAATALFNL 503
            + + +  + A   L +++     +I  +  +GA+PALV LL + + +  ++A  AL N+
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 504 CIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVL 563
                                                    +   E   A++ A  +P L
Sbjct: 124 A----------------------------------------SGGNEQIQAVIDAGALPAL 143

Query: 564 IVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSL 623
           + LL +   +  + A   L ++     E    +   GA+  L +L     E+ +++A   
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203

Query: 624 LEHL 627
           LE L
Sbjct: 204 LEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  103 bits (258), Expect = 2e-25
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 2/165 (1%)

Query: 465 LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALL 523
           +  +         +P +V  L +   +  + A   L  +           + AG + AL+
Sbjct: 1   MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60

Query: 524 KMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582
           ++L+     ++ EAL  LS +AS   E   A++ A  +P L+ LL +   +  + A   L
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 583 LSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
            ++     E +  +   GA+  L +L  S  E+  ++A   L ++
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  196 bits (500), Expect = 3e-56
 Identities = 59/324 (18%), Positives = 129/324 (39%), Gaps = 27/324 (8%)

Query: 330 IGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRII 389
           + L        +  +         ++     + +    +   AV  +  LS    ++R  
Sbjct: 126 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHA 184

Query: 390 IADAGAIPVLVNLLTTD-----------DVMTQEHAVTAILNLSIY-ENNKGLIM-LAGA 436
           + + G +  +  LL  D            +  + +A  A+ NL+     NK  +  + G 
Sbjct: 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244

Query: 437 IPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLLQNGSTRG-R 493
           + ++V  L++ S + ++  A+ L +LS      +K  +   G++ AL++           
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 494 KDAATALFNLCIYM-GNKGRAVRA-GIISALLKMLTD----SRNCMVDEALTIL----SV 543
           K   +AL+NL  +   NK       G ++ L+  LT     +   +++    IL    S+
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364

Query: 544 LASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVI 603
           +A+N + +  + + + +  L+  L++       NA   L +L  R+ ++   +  +GAV 
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 424

Query: 604 PLTELTKSGTERAKRKATSLLEHL 627
            L  L  S  +     + + L +L
Sbjct: 425 MLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  144 bits (365), Expect = 2e-37
 Identities = 50/263 (19%), Positives = 99/263 (37%), Gaps = 26/263 (9%)

Query: 353 AIEALVRKLSS-----------RSVEERRAAVAEIRSLSKRSTDNR-IIIADAGAIPVLV 400
            ++A+   L              S+  RR A   + +L+     N+  + +  G +  LV
Sbjct: 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 249

Query: 401 NLLTTDDVMTQEHAVTAILNLSIYEN--NKGLIMLAGAIPSIVQILR-AGSMEARENAAA 457
             L ++    Q+   + + NLS   +  +K  +   G++ ++++           ++  +
Sbjct: 250 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 309

Query: 458 TLFSLSLL-DENKI-IIGASGAIPALVDLL----QNGSTRGRKDAATALFNLCIYM---- 507
            L++LS    ENK  I    GA+  LV  L    Q  +    +     L N+   +    
Sbjct: 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 369

Query: 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVL-ASNPEAKIAIVKASTIPVLIVL 566
            ++        +  LL+ L      +V  A   L  L A NP+ + A+     + +L  L
Sbjct: 370 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 429

Query: 567 LRTGLPRNKENAAAILLSLCKRD 589
           + +        +AA L +L    
Sbjct: 430 IHSKHKMIAMGSAAALRNLMANR 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  142 bits (360), Expect = 6e-37
 Identities = 53/302 (17%), Positives = 102/302 (33%), Gaps = 27/302 (8%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD--NRIIIADAGAIPVLVNLLTTDDVMT 410
           A+  ++          R   V  +    +   +       A    +    N +       
Sbjct: 105 ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQ 164

Query: 411 QEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG-----------SMEARENAAATL 459
              AV  ++ LS  E ++  +   G + +I ++L+             S+  R  A   L
Sbjct: 165 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224

Query: 460 FSLSLLDENK--IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY--MGNKGRAVR 515
            +L+  D      +    G + ALV  L++ S   ++  A+ L NL     + +K     
Sbjct: 225 TNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE 284

Query: 516 AGIISALLKMLTDSRNCMV-DEALTILSVLAS-NPEAKIAIVKAS-TIPVLIVLLRTGLP 572
            G + AL++   + +        L+ L  L++   E K  I      +  L+  L     
Sbjct: 285 VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 344

Query: 573 RN----KENAAAIL---LSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLE 625
            N     E+   IL    SL   + ++   +     +  L +  KS +      A   L 
Sbjct: 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404

Query: 626 HL 627
           +L
Sbjct: 405 NL 406

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  134 bits (338), Expect = 6e-34
 Identities = 43/212 (20%), Positives = 93/212 (43%), Gaps = 13/212 (6%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLL-TTDDVMT 410
            + ALV +L S S + ++   + +R+LS R+   ++  + + G++  L+          T
Sbjct: 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303

Query: 411 QEHAVTAILNLSIY--ENNKGLIMLAGAIPSIVQILRA----GSMEARENAAATLFSLSL 464
            +  ++A+ NLS +  EN   +  + GA+  +V  L       ++   E+    L ++S 
Sbjct: 304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363

Query: 465 L----DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGII 519
           L    ++++ I+  +  +  L+  L++ S     +A   L+NL      ++      G +
Sbjct: 364 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 423

Query: 520 SALLKMLTDSRNCMVDEALTILSVLASNPEAK 551
           S L  ++      +   +   L  L +N  AK
Sbjct: 424 SMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  126 bits (319), Expect = 2e-31
 Identities = 52/341 (15%), Positives = 111/341 (32%), Gaps = 62/341 (18%)

Query: 345 RDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT 404
             +   V  + +L+  L +    ++      + ++S  S D+ I +  +G +P+L+ LL 
Sbjct: 25  SHLGTKVEMVYSLLSMLGTH---DKDDMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLH 80

Query: 405 TDDVM------------TQEHAVTAILNLSIYENNKG----------------------- 429
            +D               +  A  A+ N+   + +                         
Sbjct: 81  GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140

Query: 430 --LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN 487
                    +      + A        A   L  LS  +E++  +   G + A+ +LLQ 
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQV 200

Query: 488 GSTRG-----------RKDAATALFNLCIYMGNKGRAVR--AGIISALLKMLTDSRNCMV 534
                           R+ A  AL NL          +    G + AL+  L      + 
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260

Query: 535 DEALTILSVLA--SNPEAKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDTE 591
               ++L  L+  ++  +K  + +  ++  L+            ++  + L +L    TE
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320

Query: 592 NLACISRLGAVIP-----LTELTKSGTERAKRKATSLLEHL 627
           N A I  +   +      LT  +++ T         +L ++
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  114 bits (287), Expect = 2e-27
 Identities = 40/185 (21%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 339 KSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAI 396
           ++D + +    +V +++AL+      +     ++ ++ + +LS   T+N+  I A  GA+
Sbjct: 273 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 332

Query: 397 PVLVNLLT----TDDVMTQEHAVTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGS 448
             LV  LT    T+ +   E     + N+S      E+++ ++     + +++Q L++ S
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 392

Query: 449 MEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507
           +    NA  TL++LS  + +++  +   GA+  L +L+ +        +A AL NL    
Sbjct: 393 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452

Query: 508 GNKGR 512
             K +
Sbjct: 453 PAKYK 457

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  171 bits (435), Expect = 3e-47
 Identities = 51/281 (18%), Positives = 112/281 (39%), Gaps = 6/281 (2%)

Query: 353 AIEALVRKLS-SRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQ 411
            +   V  L    +   +  +   + +++  ++    I+  AGA+P+ + LL+++    Q
Sbjct: 65  VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQ 124

Query: 412 EHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENK 469
           E AV A+ N++      +  ++    +P ++Q+      +    NA   L +L       
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184

Query: 470 I-IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV-RAGIISALLKMLT 527
                 S  +  L  LL    T    DA  AL  L     +K +AV  AG+   L+++L 
Sbjct: 185 PEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244

Query: 528 DSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC 586
            +   +V  AL  +  + + +      I+  S +  L+ LL +     K+ A   + ++ 
Sbjct: 245 HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304

Query: 587 KRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
             +   +  +        L  + ++   R +++A   + + 
Sbjct: 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  144 bits (364), Expect = 1e-37
 Identities = 57/291 (19%), Positives = 118/291 (40%), Gaps = 8/291 (2%)

Query: 345 RDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI--IIADAGAIPVLVNL 402
            +++   V    ++  + S+S E++ +A  + R L  +  +  I  +I+  G +   V  
Sbjct: 13  MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEF 72

Query: 403 L-TTDDVMTQEHAVTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF 460
           L   ++   Q  +   + N+ S       +++ AGA+P  +++L +   + +E A   L 
Sbjct: 73  LKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALG 132

Query: 461 SLSLLDEN-KIIIGASGAIPALVDLLQNGSTRGRKDAAT-ALFNLCIYMGNKGRAVR-AG 517
           +++      +  +     +P L+ L    +       A  AL NLC          + + 
Sbjct: 133 NIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSP 192

Query: 518 IISALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKE 576
            ++ L  +L  S   ++ +A   LS L+  P  KI A++ A     L+ LL     +   
Sbjct: 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252

Query: 577 NAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
            A   + ++   D      I    A+  L  L  S  E  K++A   + ++
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  125 bits (315), Expect = 5e-31
 Identities = 44/251 (17%), Positives = 86/251 (34%), Gaps = 8/251 (3%)

Query: 385 DNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN---KGLIMLAGAIPSIV 441
           +N  +         ++ ++ +     Q  A      L   E N     +I   G +   V
Sbjct: 11  NNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFV 70

Query: 442 QILRAGS-MEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATA 499
           + L+       +  +A  L +++  +     I+  +GA+P  ++LL +     ++ A  A
Sbjct: 71  EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 130

Query: 500 LFNLCIYMGN-KGRAVRAGIISALLKMLTDSRNC-MVDEALTILSVLASNPEAKIAIVKA 557
           L N+       +   +   I+  LL++ +      M   A+  LS L           K 
Sbjct: 131 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190

Query: 558 ST-IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERA 616
           S  + VL  LL         +A   L  L     + +  +   G    L EL      + 
Sbjct: 191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 250

Query: 617 KRKATSLLEHL 627
              A   + ++
Sbjct: 251 VSPALRAVGNI 261

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  114 bits (286), Expect = 3e-27
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 5/219 (2%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            +  L   L     +    A   +  LS    D    + DAG    LV LL  +D     
Sbjct: 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252

Query: 413 HAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI- 470
            A+ A+ N+    +    +I+   A+ S++ +L +     ++ A  T+ +++  +  +I 
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY--MGNKGRAVRAGIISALLKMLTD 528
            +  +   PAL+ +LQ    R RK+AA A+ N             V  G I  L  +LT 
Sbjct: 313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 372

Query: 529 SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL 567
             + +V  AL  L  +    E + A    + I     L+
Sbjct: 373 MDSKIVQVALNGLENILRLGE-QEAKRNGTGINPYCALI 410

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 96.5 bits (240), Expect = 2e-21
 Identities = 36/218 (16%), Positives = 80/218 (36%), Gaps = 7/218 (3%)

Query: 417 AILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN---KIIIG 473
           A+       NN  +         +++++ + S E + +A      L   + N     +I 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 474 ASGAIPALVDLLQNGSTRG-RKDAATALFNLCIYMGNKGRAV-RAGIISALLKMLTDSRN 531
             G +   V+ L+       + ++A  L N+      + R V +AG +   +++L+    
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 532 CMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRN-KENAAAILLSLCKRD 589
            + ++A+  L  +A  +   +  ++  + +P L+ L           NA   L +LC+  
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 590 TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
           +           +  L+ L           A   L +L
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL 219

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 95.0 bits (236), Expect = 7e-21
 Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 11/211 (5%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
               LV  L     +    A+  + ++         +I +  A+  L++LL++     ++
Sbjct: 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294

Query: 413 HAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL--DENK 469
            A   I N++         ++ A   P+++ IL+      R+ AA  + + +     E  
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354

Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDS 529
             +   G I  L DLL    ++  + A   L N+   +G +        I+    ++ ++
Sbjct: 355 KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL-RLGEQEAKRNGTGINPYCALIEEA 413

Query: 530 RNCMVDEALTILSVLASNPEAKIAIVKASTI 560
                   L  +  L S+   +I   KA  +
Sbjct: 414 ------YGLDKIEFLQSHENQEIY-QKAFDL 437

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 2/156 (1%)

Query: 335 GKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           G I   D     V  +  A+++L+  LSS     ++ A   I +++  +      + DA 
Sbjct: 259 GNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318

Query: 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIY--ENNKGLIMLAGAIPSIVQILRAGSMEAR 452
             P L+++L T +  T++ A  AI N +          ++  G I  +  +L     +  
Sbjct: 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378

Query: 453 ENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG 488
           + A   L ++  L E +     +G  P    + +  
Sbjct: 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  165 bits (419), Expect = 2e-44
 Identities = 62/285 (21%), Positives = 124/285 (43%), Gaps = 7/285 (2%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
           A+   ++ L + SVE +  A+  + +++  STD R  +    A+  ++ L  ++      
Sbjct: 174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIR 233

Query: 413 HAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI- 470
            A   + NL    +      +++ A+P++ +++ +   E   +A   +  LS   +  I 
Sbjct: 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ 293

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDS 529
            +        LV+LL + ST  +  A  A+ N+      + + V  AG++ AL  +L+  
Sbjct: 294 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 353

Query: 530 RNCMVDEALTILSVL-ASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588
           +  +  EA   +S + A N E   A++ A+ IP L+ LL     + K+ A   + +    
Sbjct: 354 KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413

Query: 589 DTENLACISRL---GAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
             +    I  L   G + PL +L +    R        LE++ K+
Sbjct: 414 GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  153 bits (388), Expect = 3e-40
 Identities = 56/289 (19%), Positives = 118/289 (40%), Gaps = 6/289 (2%)

Query: 345 RDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLL 403
           +  S     +  + ++L+S  ++E+ +A  + R +  R     I ++  AG +P LV  +
Sbjct: 80  QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139

Query: 404 TT-DDVMTQEHAVTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS 461
                 M Q  A  A+ N+ S       +++ A A+P  +Q+L  GS+E +E A   L +
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199

Query: 462 LSL-LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGII 519
           ++    + +  +    A+  ++ L  +      + A   L NLC     +      +  +
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259

Query: 520 SALLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENA 578
             L K++       + +A   +S L+  P+  I A++       L+ LL       +  A
Sbjct: 260 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319

Query: 579 AAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
              + ++   +      +   G +  L  L  S  E  K++A   + ++
Sbjct: 320 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  139 bits (352), Expect = 2e-35
 Identities = 53/280 (18%), Positives = 117/280 (41%), Gaps = 5/280 (1%)

Query: 353 AIEALVRKLSSRSVEE-RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQ 411
            +  LV  +     E  +  A   + +++  ++    ++ DA A+P+ + LL T  V  +
Sbjct: 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190

Query: 412 EHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI 470
           E A+ A+ N++    + +  ++   A+  I+ +  +        A  TL +L    + + 
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250

Query: 471 -IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKMLTD 528
                S A+P L  L+ +  T    DA  A+  L        +A +   I   L+++L+ 
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 529 SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587
               +   AL  +  + + N      ++ A  +P L +LL +     K+ A   + ++  
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370

Query: 588 RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
            +TE +  +     + PL +L +    + K++A   + + 
Sbjct: 371 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  122 bits (306), Expect = 1e-29
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 18/311 (5%)

Query: 335 GKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           G +      +RD      A+E ++   +S      R A   + +L +           + 
Sbjct: 198 GNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257

Query: 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML-AGAIPSIVQILRAGSMEARE 453
           A+P L  L+ + D  T   A  AI  LS         ++       +V++L   S   + 
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 317

Query: 454 NAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKG 511
            A   + ++ +  D    ++  +G +PAL  LL +     +K+A   + N+         
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377

Query: 512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLL 567
             + A +I  L+K+L  +      EA   +S  +S     P+    +V    I  L  LL
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437

Query: 568 RTGLPRNKENAAAILLSLCKR-----------DTENLACISRLGAVIPLTELTKSGTERA 616
                R  E     L ++ K              EN   I + G +  +    ++  ++ 
Sbjct: 438 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKI 497

Query: 617 KRKATSLLEHL 627
             KA  ++E  
Sbjct: 498 YEKAYKIIETY 508

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 80.4 bits (198), Expect = 5e-16
 Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 4/187 (2%)

Query: 445 RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC 504
           R          +      S+  + +        +P +   L +   + +  A      + 
Sbjct: 56  RNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL 115

Query: 505 IYMGN--KGRAVRAGIISALLKMLTDSRNCMV-DEALTILSVLAS-NPEAKIAIVKASTI 560
                      ++AG++  L++ + +++  M+  EA   L+ +AS        +V A  +
Sbjct: 116 SREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175

Query: 561 PVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKA 620
           P+ I LL TG    KE A   L ++    T+    + +  A+ P+  L  S      R A
Sbjct: 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235

Query: 621 TSLLEHL 627
           T  L +L
Sbjct: 236 TWTLSNL 242

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  162 bits (411), Expect = 2e-43
 Identities = 48/294 (16%), Positives = 112/294 (38%), Gaps = 10/294 (3%)

Query: 353 AIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQ 411
            I   V  L  +     +  +   + +++  +++    + D GAIP  ++LL +      
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 412 EHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSL------ 464
           E AV A+ N++      + L++  GAI  ++ +L    +           + +L      
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 465 LDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV-RAGIISALL 523
            +    +      +P LV LL +       D+  A+  L      +   V + G++  L+
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280

Query: 524 KMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582
           K+L  +   +V  AL  +  + +   E    ++ A  + V   LL       ++ A   +
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340

Query: 583 LSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQV 636
            ++     + +  +   G V  L  +      + +++A   + +      ++Q+
Sbjct: 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  131 bits (330), Expect = 1e-32
 Identities = 53/291 (18%), Positives = 115/291 (39%), Gaps = 10/291 (3%)

Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  AI A +  L+S        AV  + +++   +  R ++   GAI  L+ LL   D+ 
Sbjct: 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 200

Query: 410 TQEHAVTAILNLSIYENNKG------LIMLAGAIPSIVQILRAGSMEARENAAATLFSLS 463
           T        L  ++    +       L  +   +P++V++L     E   ++   +  L+
Sbjct: 201 TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260

Query: 464 LLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI-YMGNKGRAVRAGIISA 521
                +I ++   G +P LV LL          A  A+ N+         + + AG ++ 
Sbjct: 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 320

Query: 522 LLKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAA 580
              +LT+ +  +  EA   +S + +  + +I  +V    +P L+ +L     + ++ AA 
Sbjct: 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW 380

Query: 581 ILLSLCKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL 630
            + +       E +  +   G + PL  L  +   +  +     + ++ + 
Sbjct: 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  130 bits (327), Expect = 2e-32
 Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 13/297 (4%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRII-IADAGAIPVLVNLLT-TDDVMT 410
           ++E +V+ ++S ++E +  A    R L  R     I  I  AG IP  V+ L  TD    
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117

Query: 411 QEHAVTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSL-LDEN 468
           Q  +  A+ N+ S        ++  GAIP+ + +L +      E A   L +++      
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177

Query: 469 KIIIGASGAIPALVDLLQNGSTRGRKDAATA-----LFNLCIYMGNKGRAVR-AGIISAL 522
           + ++   GAI  L+ LL                   L NLC              I+  L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237

Query: 523 LKMLTDSRNCMVDEALTILSVLASNPEAKI-AIVKASTIPVLIVLLRTGLPRNKENAAAI 581
           +++L  +   ++ ++   +S L   P  +I  +VK   +P L+ LL          A   
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297

Query: 582 LLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL--RKLPQLQQV 636
           + ++     E    +   GA+     L  +     +++AT  + ++   +  Q+QQV
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  125 bits (315), Expect = 9e-31
 Identities = 52/291 (17%), Positives = 108/291 (37%), Gaps = 16/291 (5%)

Query: 353 AIEALVRKLSSRSVEE-----RRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD 407
           AI+ L+  L+   +        R     + +L +       + A    +P LV LL  +D
Sbjct: 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245

Query: 408 VMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL- 465
                 +  AI  L+        +++  G +P +V++L A  +     A   + ++    
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305

Query: 466 DENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC-IYMGNKGRAVRAGIISALLK 524
           DE    +  +GA+     LL N  T  +K+A   + N+         + V  G++  L+ 
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365

Query: 525 MLTDSRNCMVDEALTILSVLAS--NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582
           +L+ +      EA   ++   S    E  + +V    I  L+ LL     +  +     +
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425

Query: 583 LSLCK------RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
            ++ +         +    I   G +  +  L +   E   + + +L+E  
Sbjct: 426 SNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  116 bits (292), Expect = 9e-28
 Identities = 52/294 (17%), Positives = 95/294 (32%), Gaps = 21/294 (7%)

Query: 355 EALVRKLSSRSVEERRA----------AVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT 404
            + +    S   E   A           +         +           ++  +V  + 
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGIN 67

Query: 405 TDDVMTQEHAVTAILNLSIYENNK--GLIMLAGAIPSIVQIL-RAGSMEARENAAATLFS 461
           ++++ +Q  A  A   L   E       I+ AG IP  V  L +      +  +A  L +
Sbjct: 68  SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN 127

Query: 462 L-SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRAGII 519
           + S   E    +   GAIPA + LL +      + A  AL N+       +   ++ G I
Sbjct: 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 187

Query: 520 SALLKMLTDS-----RNCMVDEALTILSVLASNPEAKIAIVKAS-TIPVLIVLLRTGLPR 573
             LL +L            +      LS L  N      +      +P L+ LL    P 
Sbjct: 188 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 247

Query: 574 NKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
              ++   +  L     E +  + + G V  L +L  +        A   + ++
Sbjct: 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 90.5 bits (224), Expect = 3e-19
 Identities = 38/218 (17%), Positives = 84/218 (38%), Gaps = 11/218 (5%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            +  LV+ L +  +     A+  I ++   + +    + DAGA+ V  +LLT      Q+
Sbjct: 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK 334

Query: 413 HAVTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL--DENK 469
            A   + N+ +  ++    ++  G +P +V +L     + ++ AA  + + +     E  
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394

Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-------VRAGIISAL 522
           + +   G I  L++LL    T+  +    A+ N+       G            G +  +
Sbjct: 395 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454

Query: 523 LKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKAST 559
             +       +   +L ++    S   E    +V  +T
Sbjct: 455 EALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 66.2 bits (161), Expect = 1e-11
 Identities = 30/175 (17%), Positives = 65/175 (37%), Gaps = 9/175 (5%)

Query: 335 GKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG 394
           G I            D  A+      L++     ++ A   + +++    D    + + G
Sbjct: 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358

Query: 395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLA--GAIPSIVQILRAGSMEAR 452
            +P LV +L+  D  TQ+ A  AI N +     + ++ L   G I  ++ +L A   +  
Sbjct: 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 418

Query: 453 ENAAATLFSLSLLDEN-------KIIIGASGAIPALVDLLQNGSTRGRKDAATAL 500
           +     + ++    E         I+I   G +  +  L ++ +    K +   +
Sbjct: 419 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  146 bits (372), Expect = 1e-42
 Identities = 49/74 (66%), Positives = 59/74 (79%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
            P  F CPISLELM+DPVIV+TGQTYERS IQ+W+D G+ TCPK+Q+ L H  LTPNYVL
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 314 RSLISQWCTMHNIE 327
           +SLI+ WC  + IE
Sbjct: 65  KSLIALWCESNGIE 78

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  147 bits (371), Expect = 8e-38
 Identities = 64/343 (18%), Positives = 126/343 (36%), Gaps = 59/343 (17%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            +  ++  L  R    +  A A ++ L  R+   +  +     IPVLV LL         
Sbjct: 49  ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108

Query: 413 HAVTAILNLSIYEN--NKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENK 469
            A  A+ N+S   +  NK  I     +P++V++LR    M+  E    TL++LS  D  K
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168

Query: 470 IIIGASGAIPALVDLLQNGSTRGRK-----------------DAATALFNLCIYMGNKGR 512
           + I          +++   S   R+                 + A  L N+        R
Sbjct: 169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARR 228

Query: 513 AVRA--GIISALLKMLT------DSRNCMVDEALTILSVLASNPEAKI------------ 552
            +R   G++ AL+ ++       DS + +V+  + +L  L+     +I            
Sbjct: 229 KLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288

Query: 553 --------------AIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRD----TENL 593
                          + +   + + I LL+    P   E +A  + +LC           
Sbjct: 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348

Query: 594 ACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQV 636
           + + +  A+  + +L  +  ER  + A+  L +L    + +++
Sbjct: 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKEL 391

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  110 bits (275), Expect = 1e-25
 Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%)

Query: 342 GSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN 401
           GS   + G+ V  +   +   +   +  R ++A + SL K              +P ++ 
Sbjct: 1   GSPEFMIGEEVPSD---QYYWAPLAQHERGSLASLDSLRKGG--PPPPNWRQPELPEVIA 55

Query: 402 LLTTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLF 460
           +L       + +A   + +L    +  K  +     IP +V +L     E    A   L 
Sbjct: 56  MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALK 115

Query: 461 SLSLL--DENKIIIGASGAIPALVDLLQNGSTRG-RKDAATALFNLCIYMGNKGRAVRAG 517
           ++S     +NKI I     +PALV LL+        +     L+NL  +   K   V   
Sbjct: 116 NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA 175

Query: 518 IISALLKMLTDSRNCMVDEALT------------------ILSVLASNPEAKIAIVKAST 559
           +  AL   +    +    E                      L  ++S        ++   
Sbjct: 176 LH-ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD 234

Query: 560 --IPVLIVLLRTGLPRNKENAAAILLSLC 586
             +  LI +++  + +   ++  +   +C
Sbjct: 235 GLVDALIFIVQAEIGQKDSDSKLVENCVC 263

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  101 bits (251), Expect = 1e-22
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 17/193 (8%)

Query: 353 AIEALVRKLSSRSVEE-RRAAVAEIRSLSK----RSTDNRIIIADAGAIPVLVNLLTTDD 407
            +   +  L          A+   I++L           R  +    A+  + +LLT + 
Sbjct: 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368

Query: 408 VMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAG--------SMEARENAAATL 459
               + A  A+ NL++   NK LI    AIP++V+ L  G        S +   +   T+
Sbjct: 369 ERVVKAASGALRNLAVDARNKELIG-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427

Query: 460 FSLSLLD-ENKIIIGASGAIPALVDLLQNG--STRGRKDAATALFNLCIYMGNKGRAVRA 516
             +   + E    +  +  I  LV + ++G  S +  + AA  L  +  Y   +    + 
Sbjct: 428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKE 487

Query: 517 GIISALLKMLTDS 529
           G   +  ++  ++
Sbjct: 488 GWKKSDFQVNLNN 500

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 94.6 bits (234), Expect = 2e-20
 Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 22/231 (9%)

Query: 409 MTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE- 467
              E    A L+                +P ++ +L       + NAAA L  L   ++ 
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK 81

Query: 468 NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY--MGNKGRAVRAGIISALLKM 525
            K  +     IP LV LL +        A  AL N+       NK        + AL+++
Sbjct: 82  VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141

Query: 526 LTDSRNCMV-DEALTILSVLASNPEAKIAIVKASTIPV--LIVLLRTGLPRNK------- 575
           L  +R+  + +     L  L+S+   K+ IV  +   +   +++  +G  R         
Sbjct: 142 LRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201

Query: 576 --------ENAAAILLSLCKRDTEN-LACISRLGAVIPLTELTKSGTERAK 617
                    N A  L ++    +E         G V  L  + ++   +  
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKD 252

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 93.1 bits (230), Expect = 6e-20
 Identities = 61/365 (16%), Positives = 121/365 (33%), Gaps = 73/365 (20%)

Query: 332 LANGKIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIII 390
           L N    +   + +    +   + ALVR L  +R ++        + +LS   +    I+
Sbjct: 114 LKNISFGRDQDN-KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV 172

Query: 391 ADAGAIPVLVNLL------------------TTDDVMTQEHAVTAILNLSIYENNKGLIM 432
               A+  L + +                    +      +    + N+S   +     +
Sbjct: 173 D--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKL 230

Query: 433 LA--GAIPSIVQILRAGSMEAR------ENAAATLFSLSLLDENKI-------------- 470
               G + +++ I++A   +        EN    L +LS     +I              
Sbjct: 231 RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVA 290

Query: 471 ------------IIGASGAIPALVDLLQNGSTRG-RKDAATALFNLCIYMGNKGRAVRA- 516
                       ++     +   + LL+   T    + +A A+ NLC      GR +R+ 
Sbjct: 291 NNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350

Query: 517 ----GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLP 572
                 +SA+  +LT+    +V  A   L  LA +   K  I K   IP L+  L  G  
Sbjct: 351 LRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQ 409

Query: 573 RNKE--------NAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG--TERAKRKATS 622
            +          +    +  +   + E    +     +  L  + KSG  +E+  R A  
Sbjct: 410 NSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469

Query: 623 LLEHL 627
           +L+ +
Sbjct: 470 VLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 85.4 bits (210), Expect = 1e-17
 Identities = 54/291 (18%), Positives = 97/291 (33%), Gaps = 50/291 (17%)

Query: 359 RKLSSRSVEERRAAVAEIRSLSKRSTDNR-IIIADAGAIPVLVNLLTTD------DVMTQ 411
           +                +R++S   ++ R  +    G +  L+ ++  +      D    
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 412 EHAVTAILNLS--------------------------IYENNKGLIMLAGAIPSIVQILR 445
           E+ V  + NLS                                 L+     +   + +L+
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 446 AGSMEA-RENAAATLFSLSLLD-----ENKIIIGASGAIPALVDLLQNGSTRGRKDAATA 499
                A  E +A  + +L           +  +    A+ A+ DLL N   R  K A+ A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378

Query: 500 LFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEAL---------TILSVLASNPEA 550
           L NL +   NK   +    I  L+K L   +                 TI  V+A N EA
Sbjct: 379 LRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437

Query: 551 KIAIVKASTIPVLIVLLRTGLPRNKEN-AAAILLSLCKRDTENLACISRLG 600
              + +   I  L+++ ++G    KE  AAA++L       E    + + G
Sbjct: 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  137 bits (346), Expect = 8e-38
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 208 QMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIK-----KPDVLIIPADFLCPI 262
           +   +L+ R           D    + + +  +  M E+      K     IP      I
Sbjct: 52  EKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKI 111

Query: 263 SLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCT 322
           S ELMR+P I  +G TY+R  I+  +       P T+  L    L PN  ++ +I  +  
Sbjct: 112 SFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171

Query: 323 MH 324
            +
Sbjct: 172 EN 173

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  139 bits (350), Expect = 1e-35
 Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 35/301 (11%)

Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
           I   V+ LSS+  + +      I+    +    +  +   G I  LV+LL + +   Q+ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 414 AVTAILNLSIYEN-NKGLIMLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKII 471
           A  A+ NL      NK        I   V +LR  G+ E ++     L++LS  DE K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 472 IGASGAIPALVDLL----------------QNGSTRGRKDAATALFNLCIYMGNKGRAVR 515
           + A  A+P L D +                +        +A   L NL      +     
Sbjct: 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 516 -AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRN 574
            +G+I +L+  + +       +  ++ + +         +          +         
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 575 KENAAA---------------ILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRK 619
           ++++                   L   + + +    +    A+     L     + A  +
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 620 A 620
           A
Sbjct: 303 A 303

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  127 bits (319), Expect = 1e-31
 Identities = 65/325 (20%), Positives = 117/325 (36%), Gaps = 43/325 (13%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQ 411
            I  LV  L S +   ++AA   +R+L  RST N++       I   V+LL  T +   Q
Sbjct: 45  GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQIL----------------RAGSMEARENA 455
           +     + NLS  +  K  + +A A+P +   +                     E   NA
Sbjct: 105 KQLTGLLWNLSSTDELKEEL-IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163

Query: 456 AATLFSLSLLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV 514
              L +LS  D  +  +   SG I +L+  +QN     R D  +    +C+   N    +
Sbjct: 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLH-NLSYRL 222

Query: 515 RAGIISALLKMLTDSRNCMVDEA-----------------LTILSVLASNPEAKIAIVKA 557
            A + +   ++  ++RN   +++                    L    +NP+    +  +
Sbjct: 223 DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282

Query: 558 STIPVLIVLLRTG-LPRNKENAAAILLSLC-----KRDTENLACISRLGAVIPLTELTKS 611
             I   + L+         E  A  L +L           +     +   +  +  L +S
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342

Query: 612 GTERAKRKATSLLEHLRKLPQLQQV 636
           G     R   SLL ++ + P L +V
Sbjct: 343 GNSDVVRSGASLLSNMSRHPLLHRV 367

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 91.8 bits (227), Expect = 8e-20
 Identities = 42/299 (14%), Positives = 87/299 (29%), Gaps = 31/299 (10%)

Query: 359 RKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD------DVMTQE 412
                   E    A   +R+LS      + +   +G I  L+  +         D  + E
Sbjct: 150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVE 209

Query: 413 HAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEA----------RENAAATLFSL 462
           + +  + NLS   + +          +        S               N    L   
Sbjct: 210 NCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269

Query: 463 SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAAT-ALFNLCIYMGNKGRAVR------ 515
               +    +  S AI   ++L+         +A   AL NL    G     +       
Sbjct: 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329

Query: 516 AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNK 575
              +  + ++L    + +V    ++LS ++ +P     +      P +  LL +      
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLLTSHTGNTS 388

Query: 576 ------ENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG-TERAKRKATSLLEHL 627
                  +A   + +L     +          +  +  L +S  + +A   A  LL  +
Sbjct: 389 NSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 91.0 bits (225), Expect = 1e-19
 Identities = 20/158 (12%), Positives = 60/158 (37%), Gaps = 14/158 (8%)

Query: 362 SSRSVEERRAAVAEIRSLS-----KRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVT 416
            S+      A    +++L+       S  +++I      +P +  LL + +        +
Sbjct: 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGAS 353

Query: 417 AILNLSIYENNKGLIMLAGAIPSIVQILRAG------SMEARENAAATLFSLSLLD-ENK 469
            + N+S +     ++      P + ++L +       S +   +A  T+ +L     +  
Sbjct: 354 LLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA 412

Query: 470 IIIGASGAIPALVDLLQNGST-RGRKDAATALFNLCIY 506
               +S  +  +++L ++ ++ +  + A   L ++   
Sbjct: 413 KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 83.7 bits (206), Expect = 3e-17
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 21/249 (8%)

Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVM 409
           D  ++E  +  L + S           R L   + +     +  G      +       M
Sbjct: 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDK------M 257

Query: 410 TQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEA-RENAAATLFSLSLLDEN 468
              +    +          G +  + AI + + ++     +A  E  A  L +L+     
Sbjct: 258 MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317

Query: 469 K------IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISAL 522
                  +I      +P +  LLQ+G++   +  A+ L N+  +               +
Sbjct: 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEV 376

Query: 523 LKMLTDSRNCMVDE-------ALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNK 575
            ++LT       +          T+ +++AS P+       +S +  +I L R+      
Sbjct: 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

Query: 576 ENAAAILLS 584
             AA +LLS
Sbjct: 437 AEAARLLLS 445

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 15/69 (21%), Positives = 30/69 (43%)

Query: 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKR 618
           TIP  +  L +   + +   A  +   C +D      + +LG +  L +L +S  +  ++
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 619 KATSLLEHL 627
            A   L +L
Sbjct: 63  AAAGALRNL 71

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 353 AIEALVRKLSS------RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TT 405
               + R L+S       S +   +A   +R+L             +  +  ++NL  ++
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431

Query: 406 DDVMTQEHAVTAILNLSIYENNKGLI 431
                 E A   + ++   +  +G++
Sbjct: 432 ASPKAAEAARLLLSDMWSSKELQGVL 457

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  131 bits (331), Expect = 3e-32
 Identities = 54/324 (16%), Positives = 103/324 (31%), Gaps = 41/324 (12%)

Query: 345 RDVSGDVVAIEALVRKL---SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN 401
               G  + +    R+      +  + RR A   +  L+  +     +I D  +I  L++
Sbjct: 369 PFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMD 428

Query: 402 LLTTDDVMTQEHAVTAILNLSIY---------------------------------ENNK 428
           L    +       VT  +NL                                        
Sbjct: 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488

Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG 488
            ++   G   ++  + +  S  ++E  A  L ++  L E +  +   G + AL+ +   G
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG 548

Query: 489 STRGRKDAATALFNLCIYMGNK---GRAVRAGIISALLKMLTDSRNCM-VDEALTILSVL 544
           + +G++ A  AL  + I +  +          +I  LL +L      +   E+L  L+ L
Sbjct: 549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608

Query: 545 AS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVI 603
           AS N   +  I+K   +  +   L          AA  L +L   +            V 
Sbjct: 609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668

Query: 604 PLTELTKSGTERAKRKATSLLEHL 627
            L  L +   E         L  +
Sbjct: 669 FLALLCEDEDEETATACAGALAII 692

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 82.2 bits (202), Expect = 2e-16
 Identities = 31/221 (14%), Positives = 71/221 (32%), Gaps = 8/221 (3%)

Query: 332 LANGKIKKSDGSFRDVSGDVVAIEALVRKL-SSRSVEERRAAVAEIRSLSKRSTDNRIII 390
           LA   I  +          +  I  L+  L    +  E   ++  + +L+  +   R  I
Sbjct: 560 LARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRI 619

Query: 391 ADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLA-GAIPSIVQILRAGSM 449
                +  +   L  D +     A   + NL + E+   +       +  +  +      
Sbjct: 620 IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE 679

Query: 450 EARENAAATLFSLSLLDEN--KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507
           E     A  L  ++ +     + I+  +  +  L  L+ N S   +      + N+    
Sbjct: 680 ETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739

Query: 508 GNKGRAVRA----GIISALLKMLTDSRNCMVDEALTILSVL 544
               + +       ++S L ++  D+R    + A   L+  
Sbjct: 740 EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 68.0 bits (165), Expect = 6e-12
 Identities = 44/308 (14%), Positives = 88/308 (28%), Gaps = 44/308 (14%)

Query: 371 AAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNL--SIYENNK 428
           A+V   R       D             + + L   D+ ++     AI  L     +   
Sbjct: 224 ASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGN 283

Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG 488
            ++   G +  I+ +        +  A   L + S   +    +   G +  L  L  + 
Sbjct: 284 QVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG-VDILKRLYHSK 342

Query: 489 STRGRKDAATALFNLCIYMGNKGRAVRAGI-----ISALLKMLTDSRNCMVD---EALTI 540
           +   R  A   L  L  Y G        G      ++   +          D    A   
Sbjct: 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADG 402

Query: 541 LSVLASNPEAKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD---------- 589
           L+ L  + E K  +++  ++I  L+ L R G            ++LC             
Sbjct: 403 LAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMI 462

Query: 590 ----------------------TENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
                                  + +  ++  G    L  L K+ +  ++     +L  +
Sbjct: 463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV 522

Query: 628 RKLPQLQQ 635
             L +L+ 
Sbjct: 523 CGLKELRG 530

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 42/308 (13%), Positives = 86/308 (27%), Gaps = 35/308 (11%)

Query: 350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRST----------DNRIIIADAGAIPVL 399
             + +   +R L  +       A   ++++    +          D  +   +   I  L
Sbjct: 90  TELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTL 149

Query: 400 VNLL--TTDDVMTQEHAVTAILNLSIYE-------------NNKGLIMLAGAIPSIVQIL 444
           +  L  +  D      A   ++ L                   +GL  L      +    
Sbjct: 150 LTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYK 209

Query: 445 RAGSM----EARENAAATLFSL--SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAAT 498
              +M     +   A+  L  +  ++  +             + D L       +     
Sbjct: 210 YESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTV 269

Query: 499 ALFNLCIYMGNKGRAV--RAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK 556
           A+  L     + G  V  R GI+  +L M T         A   L   +S  +   A+ +
Sbjct: 270 AITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCE 329

Query: 557 ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC-ISRLGAVIPLTELTKSGTER 615
              + +L  L  +     +  A   L  L     ++ A      GA + L E  +    +
Sbjct: 330 QG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIK 388

Query: 616 AKRKATSL 623
             +     
Sbjct: 389 PGKDKDIR 396

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  117 bits (294), Expect = 1e-31
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 235 QENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVT 294
           +E  A  + AEI   D    P +F  P+   LM DPV + +G   +RS I R +     T
Sbjct: 10  EEIVAKNARAEIDYSD---APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-T 65

Query: 295 CPKTQQKLEHLTLTPNYVLRSLISQWCTMHN 325
            P  +Q L    L P   L+  I  W     
Sbjct: 66  DPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  114 bits (287), Expect = 1e-30
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
            P +F  P+   LM DPV + +G   +RS I R +     T P  +Q L    L P   L
Sbjct: 11  APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTESMLEPVPEL 69

Query: 314 RSLISQWCTMHN 325
           +  I  W     
Sbjct: 70  KEQIQAWMREKQ 81

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  118 bits (297), Expect = 2e-30
 Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 35/251 (13%)

Query: 342 GSFRDVSGDVVAIEALVRKLSSRSVEE--RRAAVAEIRSLSKRSTDNRIIIADAGAIPVL 399
           GS  D+      +E  V  L +  +      AA   I+    + ++ R  +     I  L
Sbjct: 1   GSNADMEMT---LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKL 57

Query: 400 VNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAIPSIVQILRAG-SMEARENAAA 457
           + LL   +   Q     A+ NL     +NK  +     +P ++Q+L+    +E ++    
Sbjct: 58  LQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITG 117

Query: 458 TLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAG 517
            L++LS  D+ K ++     +    +++   S                            
Sbjct: 118 LLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPE------------------------ 153

Query: 518 IISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKAS-TIPVLIVLLRTGLPRNK 575
                 K        +       L  ++S   + + A+ +    I  L+  +R  +   +
Sbjct: 154 --GDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211

Query: 576 ENAAAILLSLC 586
            +  A    +C
Sbjct: 212 PDDKATENCVC 222

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  116 bits (293), Expect = 6e-30
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 24/190 (12%)

Query: 339 KSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPV 398
                 R     +  I  L++ L  ++ + +RA    +R+L     DN++ +A+   +P 
Sbjct: 39  FQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPR 98

Query: 399 LVNLL-TTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEAR----- 452
           L+ +L  T D+ T++     + NLS  +  K L++    +     I+   S         
Sbjct: 99  LLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPK 158

Query: 453 ----------ENAAATLFSLSLLDEN--KIIIGASGAIPALVDLLQNGSTRGRKDAAT-- 498
                      N    L ++S    +  K +    G I +LV  ++      + D     
Sbjct: 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATE 218

Query: 499 ----ALFNLC 504
                L NL 
Sbjct: 219 NCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 92.3 bits (229), Expect = 3e-21
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 32/236 (13%)

Query: 393 AGAIPVLVNLLTTDDVM--TQEHAVTAILNLSIYE-NNKGLIMLAGAIPSIVQILRAGSM 449
              +   V++L  D ++      A T I +    +   +  +     I  ++Q+L+  + 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 450 EARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNGSTRG-RKDAATALFNLCIYM 507
           + +      L +L    ++NK+ +     +P L+ +L+       +K     L+NL    
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126

Query: 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL 567
             K   +   +++            + +  +   S        K   +    I       
Sbjct: 127 KLKNLMITEALLT------------LTENIIIPFSGWPEGDYPKANGLLDFDI------- 167

Query: 568 RTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIP-LTELTKSGTERAKRKATS 622
                    N    L ++     +    + R   +I  L    +      +    +
Sbjct: 168 -------FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKA 216

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 46/180 (25%)

Query: 433 LAGAIPSIVQILRAGSM--EARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGS 489
           +   +   V +L A  M       AA  +        E +  +     I  L+ LL+  +
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 490 TRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE 549
              ++    AL NL                                           + +
Sbjct: 66  EDVQRAVCGALRNLVF----------------------------------------EDND 85

Query: 550 AKIAIVKASTIPVLIVLLRTGL-PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
            K+ + + + +P L+ +L+       K+    +L +L   D      I+   A++ LTE 
Sbjct: 86  NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTEN 143

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 511 GRAVRAGIISALLKMLTDSRNC--MVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLL 567
             A     +   + ML         +  A T +        EA+  + +   I  L+ LL
Sbjct: 2   SNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL 61

Query: 568 RTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTE-LTKSGTERAKRKATSLLEH 626
           +      +      L +L   D +N   ++ L  V  L + L ++     K++ T LL +
Sbjct: 62  KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121

Query: 627 L 627
           L
Sbjct: 122 L 122

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  109 bits (273), Expect = 9e-29
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 238 SAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQ-TYERSYIQRWIDCGNVTCP 296
           S    + + ++        +FL PI   LM DPV++ + + T +RS I R +     T P
Sbjct: 3   SGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDP 61

Query: 297 KTQQKLEHLTLTPNYVLRSLISQWCTMH 324
             +  L    + PN  L+  I +W    
Sbjct: 62  FNRSPLTMDQIRPNTELKEKIQRWLAER 89

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 99.8 bits (248), Expect = 6e-22
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 207 DQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLEL 266
            + ++ L R+    S E    + ++    +    +   E +  +   +P +FL P+   +
Sbjct: 843 VRAVDILGRKTGLASPEFI--EKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTI 900

Query: 267 MRDPVIVAT-GQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH 324
           M+DPVI+       +RS I+  +   + T P  +  L+   +TPN  LR  I  +    
Sbjct: 901 MKDPVILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 84.2 bits (208), Expect = 3e-18
 Identities = 33/200 (16%), Positives = 69/200 (34%), Gaps = 19/200 (9%)

Query: 125 LEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSIT 184
           L++A       R +  +++   + +A+ +   + E             L++ +  E    
Sbjct: 95  LQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERE 154

Query: 185 NHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMA 244
             E +       D               +E +     +++        +   +   +   
Sbjct: 155 LEECQRNHEGHEDDGHIR-----AQQACIEAKHDKYMADM--------DELFSQVDEKRK 201

Query: 245 EIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH 304
           +   PD L         IS ELMR+P I  +G TY+R  I+  +       P T+  L  
Sbjct: 202 KRDIPDYLC------GKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255

Query: 305 LTLTPNYVLRSLISQWCTMH 324
             L PN  ++ +I  + + +
Sbjct: 256 EQLIPNLAMKEVIDAFISEN 275

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 83.5 bits (206), Expect = 8e-18
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 12/210 (5%)

Query: 353 AIEALVRK-LSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-DVMT 410
            +  LV + L + +   R  A   I + S+     +  +   GA+  L+ LL  D     
Sbjct: 82  GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 411 QEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-EN 468
           +  A+ AI  L    E      +       +++ ++    + +  +A  L +L +   E+
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 469 KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAG------IISAL 522
           K  + + G +  LV L++   +   +    AL +L        R  R        ++   
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261

Query: 523 LKMLTDSRNC--MVDEALTILSVLASNPEA 550
            ++L         ++    +L    S+P  
Sbjct: 262 CQLLQQHEEYQEELEFCEKLLQTCFSSPAD 291

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 78.9 bits (194), Expect = 3e-16
 Identities = 36/201 (17%), Positives = 73/201 (36%), Gaps = 4/201 (1%)

Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVD-LLQNGS 489
           ++     P+  +  +A   + RE A   L  L    +N         +  LV   L+ G+
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 490 TRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRN-CMVDEALTILSVLA-S 546
              R  AA  +      +   + + +  G +  LL++L       +  +AL  +S L   
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 547 NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLT 606
                +  ++     VL+  ++  + + K  +A +L +L     E+   +  +G V  L 
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 607 ELTKSGTERAKRKATSLLEHL 627
            L ++            L  L
Sbjct: 216 ALVRTEHSPFHEHVLGALCSL 236

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 75.4 bits (185), Expect = 4e-15
 Identities = 35/250 (14%), Positives = 68/250 (27%), Gaps = 45/250 (18%)

Query: 355 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN-LLTTDDVMTQEH 413
                   +   +ER  A+  +  L + + DN         + +LV   L       +  
Sbjct: 43  PTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWR 101

Query: 414 AVTAILNLSIY-ENNKGLIMLAGAIPSIVQILR-AGSMEARENAAATLFSLSL-LDENKI 470
           A   I   S      +  ++  GA+  ++++L        R  A   +  L    +   +
Sbjct: 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161

Query: 471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSR 530
                     L+  +Q    + +  +A  L NL                           
Sbjct: 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL-------------------------- 195

Query: 531 NCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT 590
                           +PE K  +     +  L+ L+RT      E+    L SL     
Sbjct: 196 --------------VGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241

Query: 591 ENLACISRLG 600
           + +       
Sbjct: 242 QGVRECREPE 251

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 77.3 bits (190), Expect = 1e-17
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 255 PADFLCPISLELMRDPVIVAT-GQTYERSYIQRWID-----CGNVTCPKT---QQKLEHL 305
            + F CPI+ E M+ PV     G TYE   I R I+          CP+       +   
Sbjct: 5   SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64

Query: 306 TLTPNYVLRSLISQWCTMHNIEQ 328
            L  +  LR  I       +   
Sbjct: 65  DLIQDEALRRAIENHNKKRHRHS 87

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 79.0 bits (194), Expect = 2e-15
 Identities = 50/278 (17%), Positives = 102/278 (36%), Gaps = 43/278 (15%)

Query: 353 AIEALVRKLSSRSV-EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD--DVM 409
            I+ L  +++S ++ ++RR AV  ++SLSK     R+ +    A+  L+++L TD  D  
Sbjct: 22  TIQKLCDRVASSTLLDDRRNAVRALKSLSK---KYRLEVG-IQAMEHLIHVLQTDRSDSE 77

Query: 410 TQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK 469
              +A+  + N+   +  + +                   E      +        +   
Sbjct: 78  IIGYALDTLYNIISNDEEEEV-------------------EENSTRQSEDLGSQFTEI-- 116

Query: 470 IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGI------ISALL 523
             I     +  L+ LL+      R      L +L       G  V+  I      +S L+
Sbjct: 117 -FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLK---QLGPQVQQIILVSPMGVSRLM 172

Query: 524 KMLTDSRNCMVDEALTILSVLA-SNPEAKIAIVKASTIPVLIVLLRT-GLPRNK---ENA 578
            +L DSR  + ++ + +L  L  SN   +  +   +    L+ ++   G        E+ 
Sbjct: 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDC 232

Query: 579 AAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERA 616
             +L +L K +  N         +  +    + G E +
Sbjct: 233 LILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENS 270

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 70.4 bits (171), Expect = 1e-13
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 18/236 (7%)

Query: 108 DEAAEKISFQFQCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSR 167
           +  A  +S  +Q    ++++ +  +       +  ++EQV    S  K  +      NS 
Sbjct: 24  NLHARDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKLLSTYESESNSF 83

Query: 168 NFFHALSQPLEKEVSITNHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPS 227
           +    +   L+K    ++           D   +    A ++        +   + +  +
Sbjct: 84  D--EHIKD-LKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTPEPATMVNN 140

Query: 228 DDVVAEGQENSAIKSMAEIKKPD-----------VLIIPADFLCPISLELMRDPVIVAT- 275
            D +   +    I +      PD           +     +  CPI+ +    P+I    
Sbjct: 141 TDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKC 200

Query: 276 GQTYERSYIQRWIDCGN-VTCPKT--QQKLEHLTLTPNYVLRSLISQWCTMHNIEQ 328
              ++R  IQ ++       CP+    Q +       + ++           + EQ
Sbjct: 201 NHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQEQ 256

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 51/234 (21%)

Query: 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDV 408
            D   +E  ++ L   S   RRAA     +L K        I D  A+  L+  L  +D 
Sbjct: 16  ADPEKVEMYIKNLQDDSYYVRRAAA---YALGK--------IGDERAVEPLIKALKDEDA 64

Query: 409 MTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
             +  A  A+          G I    A+  +++ L+      R++AA  L         
Sbjct: 65  WVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ------- 107

Query: 469 KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD 528
              IG   A+  L+  L++     R  AA AL  +           RA  +  L+K L D
Sbjct: 108 ---IGDERAVEPLIKALKDEDWFVRIAAAFALGEI--------GDERA--VEPLIKALKD 154

Query: 529 SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582
               +   A   L  +                  +  L  TG    ++ A   L
Sbjct: 155 EDGWVRQSAADALGEIGG-ERV---------RAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 41/198 (20%)

Query: 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDV 408
           GD  A+E L++ L       RRAA     +L +        I D  A+  L+  L  +D 
Sbjct: 47  GDERAVEPLIKALKDEDAWVRRAAA---DALGQ--------IGDERAVEPLIKALKDEDG 95

Query: 409 MTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
             ++ A  A+          G I    A+  +++ L+      R  AA  L         
Sbjct: 96  WVRQSAAVAL----------GQIGDERAVEPLIKALKDEDWFVRIAAAFALGE------- 138

Query: 469 KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD 528
              IG   A+  L+  L++     R+ AA AL          G      + +A+ K+   
Sbjct: 139 ---IGDERAVEPLIKALKDEDGWVRQSAADAL----------GEIGGERVRAAMEKLAET 185

Query: 529 SRNCMVDEALTILSVLAS 546
                   A+  L    S
Sbjct: 186 GTGFARKVAVNYLETHKS 203

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 41/227 (18%), Positives = 69/227 (30%), Gaps = 50/227 (22%)

Query: 429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG 488
            L      +   ++ L+  S   R  AA  L            IG   A+  L+  L++ 
Sbjct: 13  PLRADPEKVEMYIKNLQDDSYYVRRAAAYALGK----------IGDERAVEPLIKALKDE 62

Query: 489 STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP 548
               R+ AA AL          G+      +  L+K L D    +   A   L  +  + 
Sbjct: 63  DAWVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG-DE 111

Query: 549 EAKIAIVKASTIPVLIVLLRTGLPRNKENAA------------AILLSLCKRDTEN---- 592
            A         +  LI  L+      +  AA              L+   K +       
Sbjct: 112 RA---------VEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQS 162

Query: 593 ----LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQ 635
               L  I        + +L ++GT  A++ A + LE  +       
Sbjct: 163 AADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHHH 209

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 256 ADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP 309
           +  LC IS ++ R PV+   +   +E+S +++++       P T + L    +  
Sbjct: 2   SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 55

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 49/234 (20%), Positives = 77/234 (32%), Gaps = 51/234 (21%)

Query: 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDV 408
            D   +E  ++ L   S   RRAA     +L K        I D  A+  L+  L  +D 
Sbjct: 11  TDPEKVEMYIKNLQDDSYYVRRAAA---YALGK--------IGDERAVEPLIKALKDEDA 59

Query: 409 MTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
             +  A  A+          G I    A+  +++ L+      R++AA  L         
Sbjct: 60  WVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ------- 102

Query: 469 KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD 528
              IG   A+  L+  L++     R  AA AL  +           RA  +  L+K L D
Sbjct: 103 ---IGDERAVEPLIKALKDEDWFVRIAAAFALGEI--------GDERA--VEPLIKALKD 149

Query: 529 SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL 582
               +   A   L  +                  +  L  TG    ++ A   L
Sbjct: 150 EDGWVRQSAADALGEIGG-ERV---------RAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 41/198 (20%)

Query: 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDV 408
           GD  A+E L++ L       RRAA     +L +        I D  A+  L+  L  +D 
Sbjct: 42  GDERAVEPLIKALKDEDAWVRRAAA---DALGQ--------IGDERAVEPLIKALKDEDG 90

Query: 409 MTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN 468
             ++ A  A+          G I    A+  +++ L+      R  AA  L         
Sbjct: 91  WVRQSAAVAL----------GQIGDERAVEPLIKALKDEDWFVRIAAAFALGE------- 133

Query: 469 KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTD 528
              IG   A+  L+  L++     R+ AA AL          G      + +A+ K+   
Sbjct: 134 ---IGDERAVEPLIKALKDEDGWVRQSAADAL----------GEIGGERVRAAMEKLAET 180

Query: 529 SRNCMVDEALTILSVLAS 546
                   A+  L    S
Sbjct: 181 GTGFARKVAVNYLETHKS 198

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 60.2 bits (145), Expect = 2e-09
 Identities = 43/241 (17%), Positives = 79/241 (32%), Gaps = 43/241 (17%)

Query: 384 TDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQI 443
             N   I     I  L   +       ++  V  I N++  +N    +   GA+  I++ 
Sbjct: 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEY 506

Query: 444 LRAGSMEARENAAATLFSLSLLDENKIII-----------GASGAIPALVDLLQNGSTRG 492
           L                +L+     +++I            A  AIP L +LL   +   
Sbjct: 507 LANKQDIGEPIRILGCRALT-----RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD 561

Query: 493 RK--------------DAATALFNLCIYMGNKGRAVRAGIIS-----ALLKMLTDSRNCM 533
                           +A  AL NL     + G  V   I+S     + ++ L    N  
Sbjct: 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621

Query: 534 VDEALT-ILSVLASNPEAKIAIVKASTIP-------VLIVLLRTGLPRNKENAAAILLSL 585
           +  +   ++S + S+P    A       P       +L+ LL+     ++   AAI  ++
Sbjct: 622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANI 681

Query: 586 C 586
            
Sbjct: 682 A 682

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 33/232 (14%), Positives = 75/232 (32%), Gaps = 35/232 (15%)

Query: 420 NLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIP 479
              I   N+  I+    I  + + +   S   ++     +++++        +   GA+ 
Sbjct: 442 KEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVK 501

Query: 480 ALVDLLQNGSTRG---RKDAATALFNLCIYMGNK---GRAVRAGIISALLKMLTDSRNCM 533
            +++ L N    G   R     AL  + I+        +      I  L ++L  S    
Sbjct: 502 IILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVD 561

Query: 534 VD--------------EALTILSVLASNPE------AKIAIVKASTIPVLIVLLRTGLPR 573
            +              EAL  L+ LAS+         K  +        +  L+      
Sbjct: 562 DNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621

Query: 574 NKENAAAILLSLCKR---------DTENLACISRLGAVIPLTELTKSGTERA 616
            + +   ++ ++            + EN   +     ++ L +L+   ++RA
Sbjct: 622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRA 673

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 54.4 bits (130), Expect = 9e-08
 Identities = 41/281 (14%), Positives = 91/281 (32%), Gaps = 9/281 (3%)

Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
            E  +  +S R V +   +V  +  LS +++   +I ++     +L+ ++ +  +    +
Sbjct: 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLY 395

Query: 414 AVTAIL-NLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII 472
            +  I+ NLS                            A +  A       +L  N+  I
Sbjct: 396 GLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXP--AADKVGAEKAAKEDILLFNEKYI 453

Query: 473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNC 532
             +  I  L   + N S   ++     ++N+        +  + G +  +L+ L + ++ 
Sbjct: 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDI 513

Query: 533 MVDEALTILSVLA-----SNPEAKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLC 586
                +     L      +NP          + IP L  LL    P +            
Sbjct: 514 GEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573

Query: 587 KRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
             + E L  ++ L +              + +   S +E+L
Sbjct: 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 15/159 (9%)

Query: 380 SKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPS 439
           S      + I++       + NL+  ++V  Q   +  I N+  +             P 
Sbjct: 592 SDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651

Query: 440 -------IVQILRAGSMEARENAAATLFSLSLLDEN--KIIIGASGAIPALVDLLQNGST 490
                  +V++L+   +E++   AA   +++       K ++     I   + +  +   
Sbjct: 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQID 711

Query: 491 ----RGRKDAATALFNLCIYMGNKGRAVRAGIISALLKM 525
               R R       F L   + + G      ++    K+
Sbjct: 712 DIELRQR--LLMLFFGLFEVIPDNGTNEVYPLLQENQKL 748

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 32/148 (21%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            +      ++  +   RR     +  +               A   L+  L+ +D   + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRG 60

Query: 413 HAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII 472
            A   I          G      A+  ++++L   S   R  AA +L            I
Sbjct: 61  AAAWII----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQ----------I 100

Query: 473 GASGAIPALVDLLQNGSTRGRKDAATAL 500
           G      A+  L + G+   RK A   L
Sbjct: 101 GGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 31/138 (22%)

Query: 392 DAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEA 451
            +  +    + +  ++   +    TA+  +              A   +++ L       
Sbjct: 10  HSSGLVPRGSHMADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRI 58

Query: 452 RENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG 511
           R  AA  + +               A+  L+ LL++ S   R  AA +L           
Sbjct: 59  RGAAAWIIGN----------FQDERAVEPLIKLLEDDSGFVRSGAARSL----------E 98

Query: 512 RAVRAGIISALLKMLTDS 529
           +     + +A+ K+    
Sbjct: 99  QIGGERVRAAMEKLAETG 116

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 25/211 (11%), Positives = 61/211 (28%), Gaps = 30/211 (14%)

Query: 348 SGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD 407
               +  + L R L   +  +R ++    R L               A+ + +   +  +
Sbjct: 19  QCKKLNDDELFRLLDDHNSLKRISSA---RVLQL--------RGGQDAVRLAIEFCSDKN 67

Query: 408 VMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE 467
            + ++     +  + I +  +  +            L   S   R  A  +       + 
Sbjct: 68  YIRRDIGAFILGQIKICKKCEDNV----FNILNNMALNDKSACVRATAIESTAQRCKKNP 123

Query: 468 NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT 527
               I +   +        + ST  R+  A A+                  I  L+ +L 
Sbjct: 124 ----IYSPKIVEQSQITAFDKSTNVRRATAFAI----------SVINDKATIPLLINLLK 169

Query: 528 DSRNCMVDEALTILSVLA-SNPEAKIAIVKA 557
           D    + + A   +++    N + +   V+ 
Sbjct: 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEM 200

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 36/239 (15%), Positives = 65/239 (27%), Gaps = 46/239 (19%)

Query: 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD-D 407
           G   A+   +   S ++   R      +  +            +     +L N+   D  
Sbjct: 51  GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKS 104

Query: 408 VMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE 467
              +  A+ +          K  I     +          S   R   A  +        
Sbjct: 105 ACVRATAIESTAQRC----KKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV------ 154

Query: 468 NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI-----------YMGNKGRAVRA 516
               I     IP L++LL++ +   R  AA A+                 + +K   VR 
Sbjct: 155 ----INDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRI 210

Query: 517 GIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKA-------STIPVLIVLLR 568
             I  L               L++L            I++A       + +PVL  +L 
Sbjct: 211 EAIIGLSYRKD-------KRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLY 262

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 39/176 (22%)

Query: 345 RDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT 404
           ++       +E        +S   RRA      ++S         I D   IP+L+NLL 
Sbjct: 121 KNPIYSPKIVEQSQITAFDKSTNVRRATA---FAISV--------INDKATIPLLINLLK 169

Query: 405 TDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSL-- 462
             +   +  A  AI               +      V++L+  + E R  A   L     
Sbjct: 170 DPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221

Query: 463 --------SLLDENKI---------IIGASGAIPALVDLLQN-GSTRGRKDAATAL 500
                     L +N +          +G    +P L  +L           A   L
Sbjct: 222 KRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKL 277

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 87/589 (14%), Positives = 172/589 (29%), Gaps = 182/589 (30%)

Query: 32  NGRGVFKKECVDLVRRIALLKHLLEEIRDSGPLDVLPSESSSSTTSLLWWNDLVVALQ-- 89
           N   VF K  V  ++    L+  L E+R +                        V +   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAK----------------------NVLIDGV 158

Query: 90  --ASKRLLAVACCYSSGDSSDEAAEKISFQ-F-----QC--------VMWKLEKALGNIP 133
             + K  +A+  C      S +   K+ F+ F      C        ++ KL   +    
Sbjct: 159 LGSGKTWVALDVC-----LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 134 YDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKAN 193
             R D S  ++ ++   +++L+R       + S+ + + L   L     +  + V+    
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRL------LKSKPYENCL---L-----VLLN-VQNA-K 257

Query: 194 HVPDTIDSEC---------HDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMA 244
              +  +  C            D +        S            +   +  S +    
Sbjct: 258 AW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-----HHSMTLTPDEVKSLLLKYL 311

Query: 245 EIKKPD-----VLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRW-----ID-CGNV 293
           + +  D     +   P      I  E +RD   +AT   ++  ++        I+   NV
Sbjct: 312 DCRPQDLPREVLTTNP--RRLSIIAESIRDG--LATWDNWK--HVNCDKLTTIIESSLNV 365

Query: 294 TCPKTQQKL-EHLTL------TPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRD 346
             P   +K+ + L++       P  +L  +   W                    D    D
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WF-------------------DVIKSD 403

Query: 347 VSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD 406
           V         +V KL   S+            + K+  ++ I I       + + L    
Sbjct: 404 V-------MVVVNKLHKYSL------------VEKQPKESTISIPS-----IYLELKVKL 439

Query: 407 DVMTQEHAVTAILN----LSIYENNK-GLIMLAGAIPS-IVQILRAGSMEARENAAATLF 460
           +     H   +I++       ++++      L     S I   L+      R      LF
Sbjct: 440 ENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT----LF 493

Query: 461 SLSLLD----ENKIIIG--ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG--NKGR 512
            +  LD    E KI     A  A  ++++ LQ                L  Y        
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ---------------QLKFYKPYICDND 538

Query: 513 AVRAGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAIVKASTI 560
                +++A+L  L     N +  +   +L +     +  I       +
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 4e-08
 Identities = 84/521 (16%), Positives = 153/521 (29%), Gaps = 144/521 (27%)

Query: 171 HALSQPLEKEVSITNHEVKAKANHVPDTI--DSECHDADQMMNKLERRFSSVSSEVCPSD 228
           H     ++ E     ++ K   +   D    + +C D   M   +      +S E    D
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI------LSKEEI--D 52

Query: 229 DVVAEGQENSAIKSMAEI--KKP---------DVLIIPADFLC-PISLELMRDPVIVATG 276
            ++      S    +      K          +VL I   FL  PI  E  R P ++   
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRM 111

Query: 277 QTYERSYIQRWIDC---GNVTCPKTQQKL-EHLTLTPNYVLRSLISQWCTMHNIEQPIGL 332
              +R  +          NV+  +   KL + L       LR   ++   +       G+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELRP--AKNVLID------GV 158

Query: 333 ANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRA-AVAEIRSLSKRSTDNRIIIA 391
             G   K+           VA++       S  V+ +    +  + +L   ++   ++  
Sbjct: 159 L-G-SGKT----------WVALDVC----LSYKVQCKMDFKIFWL-NLKNCNSPETVLE- 200

Query: 392 DAGAIPVLVNLLTTDDVMTQ---EHAVTAILNL-SIYENNKGLIMLAGAIPSIVQILRAG 447
                 +L  LL   D       +H+    L + SI    + L+        ++ +L   
Sbjct: 201 ------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLL-- 251

Query: 448 SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM 507
               +   A   F+LS     KI++                +TR  K     L       
Sbjct: 252 --NVQNAKAWNAFNLSC----KILL----------------TTRF-KQVTDFL------S 282

Query: 508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVL- 566
                 +    +      LT       DE  ++L          +     +T P  + + 
Sbjct: 283 AATTTHIS---LDHHSMTLTP------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 567 ---LRTGLPR-------NKEN-AAAILLSLCKRDT-------ENLACISRLGAVIPL--- 605
              +R GL         N +     I  SL   +        + L+ +    A IP    
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILL 392

Query: 606 ----TELTKSGTER--AKRKATSLLEHLRK-----LPQLQQ 635
                ++ KS       K    SL+E   K     +P +  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 254 IPADFLCPISLELMRDPVIVAT-GQTYERSYIQR-WIDCGNVTCPKTQQKLEHL-TLTPN 310
           IP + LC I  ++M D V++   G +Y    I+   ++    TCP   Q       L  N
Sbjct: 10  IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 311 YVLRSLISQW 320
             LR  ++ +
Sbjct: 70  KFLRQAVNNF 79

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH-LTLTPNYVLRS 315
            F C    EL+  P+         +  + R       +CP  +  L     +  N  L++
Sbjct: 52  TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQT 111

Query: 316 LISQ 319
           +++Q
Sbjct: 112 VLNQ 115

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 254 IPADFLCPISLELMRDPVIVAT-GQTYERSYIQR-WIDCGNVTCPKTQQKL 302
           IP + LC I  ++M D V++   G +Y    I+   ++    TCP   Q  
Sbjct: 12  IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 201 SECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIPADFLC 260
           S+ + A      +E    +   +    +D   +   +  +  + E     +  +   F+C
Sbjct: 23  SKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNF-LKKLEQSFMC 81

Query: 261 PISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL-EHLTLTPNYVLRSLISQ 319
               EL+  PV         +  +QR       +CP  +  L ++  + PN +L++L+  
Sbjct: 82  VCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDL 141

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 254 IPADFLCPISLELMRDPVIVAT-GQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
           I   F C I +E +RD  +     +    S I+RW+      CP  +  L+   L     
Sbjct: 19  IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78

Query: 313 LRSLISQ 319
              +  Q
Sbjct: 79  AEEVTQQ 85

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWID--CGNVTCPKTQQKLEHLTLTPNYVLR 314
              CPI LEL+++PV       + +  + + ++   G   CP  +  +   +L  +    
Sbjct: 21  ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80

Query: 315 SLISQ 319
            L+ +
Sbjct: 81  QLVEE 85

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 254 IPADFLCPISLELMRDPVIVAT-GQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
           I     C I  E     +I+      Y    I++++      CP     +    L  N +
Sbjct: 19  IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNRI 77

Query: 313 LRSLISQWCTMHN 325
           L  L+       N
Sbjct: 78  LDELVKSLNFARN 90

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 257 DFLCPISLELMRDPV-IVATGQTYERSYIQRWIDCGNVTCPKTQQKL-EHLTLTPNYVLR 314
           + +CPI L+++++ +        +    I   +  GN  CP  ++KL    +L P+    
Sbjct: 54  ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 113

Query: 315 SLISQ 319
           +LIS+
Sbjct: 114 ALISK 118

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
           + + + CPI L  +R+ V    G  + ++ I + I      CP   + L    L P+   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 314 RSLISQ 319
           +  I  
Sbjct: 75  KREILS 80

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
           + + + CPI L  +R+ V    G  + ++ I + I      CP   + L    L P+   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 314 RSLISQ 319
           +  I  
Sbjct: 75  KREILS 80

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 13/234 (5%)

Query: 354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEH 413
           I  L+ +L +  V+ R  ++ ++ +++      R     +  +P L + +  +D      
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER---TRSELLPFLTDTIYDED-EVLLA 67

Query: 414 AVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG 473
               +   +        +     +P +  +        R+ A  +L ++S       +  
Sbjct: 68  LAEQLGTFTTLVGGPEYVHC--LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL-- 123

Query: 474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCM 533
                  LV  L  G     + +A  LF++C        AV+A +      + +D    +
Sbjct: 124 -EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV--SSAVKAELRQYFRNLCSDDTPMV 180

Query: 534 VDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK 587
              A + L   A   E     VK+  IP+   L        +  A    +++ +
Sbjct: 181 RRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 15/223 (6%)

Query: 342  GSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN 401
            G   D+SG +     ++   SS S E + AA   + S+S  +            +P ++ 
Sbjct: 846  GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE--------YLPFVLQ 897

Query: 402  LLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFS 461
             +T+          +    +S          +      +++         R   A  L  
Sbjct: 898  EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGK 957

Query: 462  LSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISA 521
            L+L+D   ++       P L   L +GS+  R    TA+             +    I  
Sbjct: 958  LTLIDPETLL-------PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGD 1010

Query: 522  LLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLI 564
             LK L D    +   AL   +  A N  + I  +  + +P L 
Sbjct: 1011 FLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 6/49 (12%), Positives = 16/49 (32%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKL 302
           +   + C     ++  P     G  +  S +   +   +  C   Q+ +
Sbjct: 12  VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 238 SAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC-----GN 292
           S    MA      + +I  +  CPI LEL+++PV      ++ R+ I    +      G 
Sbjct: 3   SGSSGMAS---SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGK 59

Query: 293 VTCPKTQQKLEHLTLTPNYVLRSLI 317
             CP  +       L PN  + +++
Sbjct: 60  GNCPVCRVPYPFGNLKPNLHVANIV 84

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 8/85 (9%)

Query: 238 SAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRW-----IDCGN 292
           S    MA      ++ +  +  CPI LEL+  P+ +  G ++ ++ +        +D G 
Sbjct: 3   SGSSGMAS---GILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGE 59

Query: 293 VTCPKTQQKLEHLTLTPNYVLRSLI 317
            +CP  +   +   + PN  + +++
Sbjct: 60  SSCPVCRISYQPENIRPNRHVANIV 84

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT-------LTP 309
           +  C I +E++ +PV +    T  +   Q  ++  ++ CP  ++++   T          
Sbjct: 15  ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74

Query: 310 NYVLRSLISQWC 321
           N  L ++I +  
Sbjct: 75  NVELWTIIQKHY 86

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCP 296
           + A +LC     ++R P     G  Y    +   +  G   C 
Sbjct: 28  LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCA 70

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWID------CGNVTCPKTQQKLEHLTLTPN 310
           +  CPI LEL+ +P+ +  G +  R+ I            G  +CP          L  N
Sbjct: 12  EVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71

Query: 311 YVLRSLI 317
             L +++
Sbjct: 72  QHLANIV 78

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 9/82 (10%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 243 MAEIKKPDVLIIPADFLCPISLELMRDPVIVAT-GQTYERSYIQRWIDCGNVTCP----K 297
           M    +  +  +    +C +      D   +     ++ ++ I R+++  +  CP    +
Sbjct: 1   MHRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQ 59

Query: 298 TQQKLEHLTLTPNYVLRSLISQ 319
             +    L +  +  L+ ++ +
Sbjct: 60  VHKTRPLLNIRSDKTLQDIVYK 81

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 46/227 (20%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQE 412
            ++ L+  L        + A++ I  ++K   D          +  L +LL   + +   
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKSEAIPLT 87

Query: 413 HAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKII- 471
             +         E  + +      IP +    R G  + + N +  L  ++  +   +  
Sbjct: 88  QEIAKAFGQMAKEKPELV---KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS 144

Query: 472 --------------------------IG------ASGAIPALVDLLQNGSTRGRKDAATA 499
                                     +G       +  +P +++LL +G    R  A  A
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEA 204

Query: 500 LFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS 546
           L    +++      +R  ++   L+ L D+ + +       +S L  
Sbjct: 205 L----VHLATLNDKLRK-VVIKRLEELNDTSSLVNKTVKEGISRLLL 246

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 237 NSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQR-WIDCGNVT- 294
           +S    MA  +  + L    + +CPI L++++ PV +  G  +    I +          
Sbjct: 2   SSGSSGMASGQFVNKL--QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFK 59

Query: 295 CP 296
           CP
Sbjct: 60  CP 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	636
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.93
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.91
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.91
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.82
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.8
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.8
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.8
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.8
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.79
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.79
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.71
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.68
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.55
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.54
3grl_A	651	General vesicular transport factor P115; vesicle t	99.52
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.46
3grl_A	651	General vesicular transport factor P115; vesicle t	99.37
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.34
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.34
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.29
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.25
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.24
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.22
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.21
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.2
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.17
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.16
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.16
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.16
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.15
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.13
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.12
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.11
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.1
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.09
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.09
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.07
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.06
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.04
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.03
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.0
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.0
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.99
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.98
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.97
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.95
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.92
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.89
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.88
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.85
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.83
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.82
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.79
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.78
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.77
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.76
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.75
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.75
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.74
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.7
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.62
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.6
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.51
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.51
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.48
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.47
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.46
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.46
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.46
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.45
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.42
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.42
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.38
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.35
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.35
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.35
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.33
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.33
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.33
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.32
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.31
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.27
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.25
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.2
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.18
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.14
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.09
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.09
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.95
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.93
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.9
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.9
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.9
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.88
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.86
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.8
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.8
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.77
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.77
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.76
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.71
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.66
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.62
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.54
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.53
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.4
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.4
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.39
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.28
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.15
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.13
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.04
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.91
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.39
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.31
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.21
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.15
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.85
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	95.35
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.27
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	95.07
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	94.98
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	94.95
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	94.8
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.27
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.85
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.38
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.29
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	93.05
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.65
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	92.05
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	91.91
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	91.06
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.98
2x1g_F	971	Cadmus; transport protein, developmental protein,	90.85
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	89.78
2x1g_F	971	Cadmus; transport protein, developmental protein,	89.53
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	88.69
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	88.03
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	87.75
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	87.35
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	86.67
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	86.27
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	85.1
2x19_B	963	Importin-13; nuclear transport, protein transport;	84.79
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	84.66
2x19_B	963	Importin-13; nuclear transport, protein transport;	84.56
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	84.37
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	83.38
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	83.08
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	81.3

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.2e-30  Score=276.84  Aligned_cols=264  Identities=21%  Similarity=0.262  Sum_probs=237.9

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----------CChHHHHHHHHHHHHhhhCc-chHHHHHH-
Q 006669          367 EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----------DDVMTQEHAVTAILNLSIYE-NNKGLIML-  433 (636)
Q Consensus       367 ~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----------~d~~~~e~Av~aL~nLs~~~-~~k~~I~~-  433 (636)
                      ..+..|++.|.+++.+ +++|..+.+.|+++.|+.+|.+           .++.++++|+++|.||+..+ .++..+.. 
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            3455799999999974 8999999999999999999953           23678999999999999854 47877765 


Q ss_pred             hCChHHHHHHHhcCcHHHHHHHHHHHHHccCC--CchhHHHHhcCchHHHHhhh-ccCCHHHHHHHHHHHHhhhh-ccch
Q 006669          434 AGAIPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLL-QNGSTRGRKDAATALFNLCI-YMGN  509 (636)
Q Consensus       434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL~~-~~~n  509 (636)
                      .|+|+.|+.+|++++++++++|+++|.||+..  +++|..|.+.|++++|+++| +++++..++.|+.+|+||+. ++++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            56799999999999999999999999999985  46899999999999999975 56789999999999999998 6688


Q ss_pred             HHHHH-HhchHHHHHHHhcCCCH----HHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 006669          510 KGRAV-RAGIISALLKMLTDSRN----CMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA  580 (636)
Q Consensus       510 ~~~lv-~~g~v~~Lv~lL~~~~~----~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~  580 (636)
                      +..++ ..|+++.|+++|.+.++    .+++.|+++|.||+.    +++++..+.+.|+++.|+++|++++..++++|++
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~  285 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG  285 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence            88888 69999999999987544    589999999999995    8899999999999999999999999999999999


Q ss_pred             HHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          581 ILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       581 ~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      +|.+|+..+++.+..+.+.|+++.|+.++.++++++++.|.++|++|....
T Consensus       286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999888999999999999999999999999999999999999998754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=2.5e-30  Score=284.70  Aligned_cols=281  Identities=22%  Similarity=0.243  Sum_probs=245.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~~I  431 (636)
                      .++.|++.|++++++.|..|+..|++++.+++.++..+.+.|+||.|+.+|+++++.+++.|+++|.||+.+ ++++..|
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            489999999999999999999999999988888898999999999999999999999999999999999985 8999999


Q ss_pred             HHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc--------cC--------CHHHHH
Q 006669          432 MLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ--------NG--------STRGRK  494 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~--------~~--------~~~~k~  494 (636)
                      ++.|+|++|+++|+ +++++++++|+++|+||+..++++..+++ |++++|+.+|.        ++        +....+
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 88999999999999999999999999999 99999999993        22        345566


Q ss_pred             HHHHHHHhhhhccchHHHHHHh-chHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC--------------------
Q 006669          495 DAATALFNLCIYMGNKGRAVRA-GIISALLKMLTD------SRNCMVDEALTILSVLASN--------------------  547 (636)
Q Consensus       495 ~A~~aL~nL~~~~~n~~~lv~~-g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~--------------------  547 (636)
                      +|+++|+||+.+++++..+++. |+++.|+.+|.+      .+..+++.|+.+|.+|+..                    
T Consensus       162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            9999999999988889999997 999999999974      4567889999999999732                    


Q ss_pred             -------------------------------hhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccChHH---
Q 006669          548 -------------------------------PEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDTEN---  592 (636)
Q Consensus       548 -------------------------------~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~~~---  592 (636)
                                                     +++.+.+++.|+++.|+.+|.++ ++..++.|+++|.++|.++...   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                                           12333455667899999999754 6999999999999999865432   


Q ss_pred             H-H-HHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcccccc
Q 006669          593 L-A-CISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQ  634 (636)
Q Consensus       593 ~-~-~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~~~  634 (636)
                      . . .+.+.|+++.|+.++.++++++++.|.++|+++.+..+.+
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~  365 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH  365 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred             HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH
Confidence            1 2 3346899999999999999999999999999998866543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=1.2e-29  Score=283.40  Aligned_cols=282  Identities=22%  Similarity=0.261  Sum_probs=244.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC--cchHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY--ENNKG  429 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~--~~~k~  429 (636)
                      ..++.||++|.+++.+.|..|+..|++++..++++|..|++.|+||.||.+|++++..++++|+++|.||+.+  +++|.
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            4699999999999999999999999999998999999999999999999999999999999999999999984  89999


Q ss_pred             HHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc------------------cCCH
Q 006669          430 LIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ------------------NGST  490 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~------------------~~~~  490 (636)
                      .|++.|+|++|+.+|++ ++.+++++|+++|++||..+++|..|++ +++++|++++.                  ..+.
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~  206 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE  206 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence            99999999999999998 5789999999999999999999999995 57999999872                  1146


Q ss_pred             HHHHHHHHHHHhhhhccch-HHHHHH-hchHHHHHHHhcC------CCHHHHHHHHHHHHHHhcChh-------------
Q 006669          491 RGRKDAATALFNLCIYMGN-KGRAVR-AGIISALLKMLTD------SRNCMVDEALTILSVLASNPE-------------  549 (636)
Q Consensus       491 ~~k~~A~~aL~nL~~~~~n-~~~lv~-~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~~~-------------  549 (636)
                      .++++|+++|+||+.++++ |..+++ .|+++.|+.++.+      .+...++.|+++|+||+...+             
T Consensus       207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~  286 (584)
T 3l6x_A          207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA  286 (584)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence            8999999999999998754 888888 5778899999863      467899999999999997521             


Q ss_pred             -------------hHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhccCh----HHHHHHHHcCChHHHHHhhhc
Q 006669          550 -------------AKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLSLCKRDT----ENLACISRLGAVIPLTELTKS  611 (636)
Q Consensus       550 -------------~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~----~~~~~i~~~G~i~~L~~Ll~~  611 (636)
                                   +.+.+++.++|+.|+.+|+ +.++.++++|+++|.+||.++.    ..+..+.+.|+++.|+.|+.+
T Consensus       287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s  366 (584)
T 3l6x_A          287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN  366 (584)
T ss_dssp             ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred             ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence                         2223344466788999996 4579999999999999998652    223344567899999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcccccc
Q 006669          612 GTERAKRKATSLLEHLRKLPQLQ  634 (636)
Q Consensus       612 g~~~~k~kA~~lL~~l~~~~~~~  634 (636)
                      +++.+++.|.++|++|......+
T Consensus       367 ~~~~v~~~A~~aL~nLs~~~~~~  389 (584)
T 3l6x_A          367 EHERVVKAASGALRNLAVDARNK  389 (584)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCH
T ss_pred             CCHHHHHHHHHHHHHHhCChhHH
Confidence            99999999999999998866543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=2.1e-29  Score=275.27  Aligned_cols=261  Identities=21%  Similarity=0.264  Sum_probs=235.4

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----------CChHHHHHHHHHHHHhhhCcc-hHHHHHH-hCC
Q 006669          370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-----------DDVMTQEHAVTAILNLSIYEN-NKGLIML-AGA  436 (636)
Q Consensus       370 ~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-----------~d~~~~e~Av~aL~nLs~~~~-~k~~I~~-~G~  436 (636)
                      ..|++.|.+++. ++++|..+.+.|++++|+.+|..           .++.++++|+++|.||+.+++ ++..+.. .|+
T Consensus       166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga  244 (458)
T 3nmz_A          166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC  244 (458)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence            389999999986 58999999999999999999952           236789999999999998554 6777765 667


Q ss_pred             hHHHHHHHhcCcHHHHHHHHHHHHHccCC--CchhHHHHhcCchHHHHhhh-ccCCHHHHHHHHHHHHhhhh-ccchHHH
Q 006669          437 IPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGASGAIPALVDLL-QNGSTRGRKDAATALFNLCI-YMGNKGR  512 (636)
Q Consensus       437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL~~-~~~n~~~  512 (636)
                      |+.|+.+|++++++++++|+++|.||+..  +++|..|.+.|++++|+++| .++++.+++.|+.+|+||+. +++++..
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~  324 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD  324 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence            99999999999999999999999999985  46889999999999999975 56788999999999999998 6688998


Q ss_pred             HH-HhchHHHHHHHhcCCCH----HHHHHHHHHHHHHhc----ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669          513 AV-RAGIISALLKMLTDSRN----CMVDEALTILSVLAS----NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILL  583 (636)
Q Consensus       513 lv-~~g~v~~Lv~lL~~~~~----~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  583 (636)
                      ++ ..|+++.|+++|.+.+.    .+++.|+++|.||+.    +++++..+.+.|+++.|+.+|++++..++++|+++|+
T Consensus       325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~  404 (458)
T 3nmz_A          325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW  404 (458)
T ss_dssp             HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence            88 69999999999987544    489999999999995    8889999999999999999999999999999999999


Q ss_pred             HhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          584 SLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       584 ~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      +++..+++.+..+++.|+++.|+.++.++++.+++.|.++|++|....
T Consensus       405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999888999999999999999999999999999999999999998654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=5e-29  Score=274.35  Aligned_cols=285  Identities=22%  Similarity=0.212  Sum_probs=250.6

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhhCcchH
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      +.++++.|++.|++++++.|..|+..|++|+.+++++|..|++.|+||.|+.+|+ +++++++++|+++|.||+.+++++
T Consensus        42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~  121 (457)
T 1xm9_A           42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK  121 (457)
T ss_dssp             HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence            4568999999999999999999999999999988999999999999999999999 889999999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHh--------cC--------cHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhccC---
Q 006669          429 GLIMLAGAIPSIVQILR--------AG--------SMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQNG---  488 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~--------~~--------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~~~---  488 (636)
                      ..+++ |+++.|+.+|.        ++        ++++..+|+++|+||+..++++..+.+. |++++|+.+|+++   
T Consensus       122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  200 (457)
T 1xm9_A          122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA  200 (457)
T ss_dssp             HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence            99999 99999999993        33        3455669999999999988889999998 9999999888631   


Q ss_pred             --------------------------------------------------------------------------------
Q 006669          489 --------------------------------------------------------------------------------  488 (636)
Q Consensus       489 --------------------------------------------------------------------------------  488 (636)
                                                                                                      
T Consensus       201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (457)
T 1xm9_A          201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY  280 (457)
T ss_dssp             TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred             cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence                                                                                            


Q ss_pred             ----------------CHHHHHHHHHHHHhhhhccchH-----HHHH-HhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          489 ----------------STRGRKDAATALFNLCIYMGNK-----GRAV-RAGIISALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       489 ----------------~~~~k~~A~~aL~nL~~~~~n~-----~~lv-~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                                      ++..++.|+++|.||+..+...     ..++ ++|++|.|+++|.+++.+++..|+++|.||+.
T Consensus       281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence                            2455667889999998765331     2234 58999999999999999999999999999999


Q ss_pred             ChhhHHHHHhcCcHHHHHHHHcCCC------HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC-CHHHHHH
Q 006669          547 NPEAKIAIVKASTIPVLIVLLRTGL------PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG-TERAKRK  619 (636)
Q Consensus       547 ~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g-~~~~k~k  619 (636)
                      +++.+..|.. |+++.|+++|..++      +.+...++.+|.+++..+++....+.+.|++++|+.++.++ +++++++
T Consensus       361 ~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~  439 (457)
T 1xm9_A          361 HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA  439 (457)
T ss_dssp             SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHH
Confidence            9888877754 79999999998763      35777899999999998999999999999999999999999 9999999


Q ss_pred             HHHHHHHhhcccccccC
Q 006669          620 ATSLLEHLRKLPQLQQV  636 (636)
Q Consensus       620 A~~lL~~l~~~~~~~~~  636 (636)
                      |.++|.++..+.+++.+
T Consensus       440 A~~~L~~~~~~~~l~~~  456 (457)
T 1xm9_A          440 ARLLLSDMWSSKELQGV  456 (457)
T ss_dssp             HHHHHHTTSSSTTCSSC
T ss_pred             HHHHHHHHHcchhhhcc
Confidence            99999999998888753

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=6.1e-28  Score=269.67  Aligned_cols=283  Identities=22%  Similarity=0.233  Sum_probs=241.3

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcch
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENN  427 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~  427 (636)
                      +.++|+.||++|++++.++|..|+.+|++|+.+ +++||..|++.|+||.|+.+|++ .+..++++|+.+|+|||.++++
T Consensus        88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~  167 (584)
T 3l6x_A           88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI  167 (584)
T ss_dssp             HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred             HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence            446899999999999999999999999999985 69999999999999999999997 5788999999999999999999


Q ss_pred             HHHHHHhCChHHHHHHHh------------------cCcHHHHHHHHHHHHHccCCCc-hhHHHHhc-CchHHHHhhhcc
Q 006669          428 KGLIMLAGAIPSIVQILR------------------AGSMEARENAAATLFSLSLLDE-NKIIIGAS-GAIPALVDLLQN  487 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~------------------~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~-g~i~~Lv~LL~~  487 (636)
                      |..|++ |+|++|+++|.                  ..+.+++++|+++|+||+..++ ++..|.+. |+++.||.++++
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            999996 57999999862                  1247899999999999998875 47777776 666677776642


Q ss_pred             --------------------------------------------------------------------------CCHHHH
Q 006669          488 --------------------------------------------------------------------------GSTRGR  493 (636)
Q Consensus       488 --------------------------------------------------------------------------~~~~~k  493 (636)
                                                                                                .++.++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence                                                                                      134455


Q ss_pred             HHHHHHHHhhhhccc-----hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc
Q 006669          494 KDAATALFNLCIYMG-----NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR  568 (636)
Q Consensus       494 ~~A~~aL~nL~~~~~-----n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~  568 (636)
                      ++|++||.|||....     ++..+.+.|+++.|++||.+.+..+++.|+++|.||+.++.++..| ..|++|.||.+|.
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~  405 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP  405 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence            566666666665431     2333345789999999999999999999999999999999988877 6799999999998


Q ss_pred             CC--------CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcC--CHHHHHHHHHHHHHhhcccccc
Q 006669          569 TG--------LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSG--TERAKRKATSLLEHLRKLPQLQ  634 (636)
Q Consensus       569 ~~--------s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g--~~~~k~kA~~lL~~l~~~~~~~  634 (636)
                      ++        +..+...|+++|.||+..++++...+.+.|+++.|+.++.++  .+.+++.|.++|.+|..+.+++
T Consensus       406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr  481 (584)
T 3l6x_A          406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR  481 (584)
T ss_dssp             SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHH
Confidence            76        467888999999999999999999999999999999999987  8999999999999999877664

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=2e-27  Score=273.82  Aligned_cols=284  Identities=14%  Similarity=0.154  Sum_probs=254.3

Q ss_pred             cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-----------------------------hhH---HHHHhcC
Q 006669          347 VSGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRST-----------------------------DNR---IIIADAG  394 (636)
Q Consensus       347 ~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-----------------------------~~r---~~i~e~g  394 (636)
                      +..+.+.++.|+++|++++...+..|+..|.+++...+                             .++   ..++++|
T Consensus       416 lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG  495 (810)
T 3now_A          416 LIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG  495 (810)
T ss_dssp             HHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence            34467899999999999999999999999999997542                             223   6788999


Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH-
Q 006669          395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG-  473 (636)
Q Consensus       395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~-  473 (636)
                      ++|.|+.+|+++++.++++|+++|.||+.+++++..+++.|++++|+.+|+++++..+++|+++|.+|+...+....+. 
T Consensus       496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~  575 (810)
T 3now_A          496 ITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG  575 (810)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence            9999999999999999999999999999988899999999999999999999999999999999999987654433221 


Q ss_pred             --hcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669          474 --ASGAIPALVDLLQNG-STRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE  549 (636)
Q Consensus       474 --~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~  549 (636)
                        ..|++++|+.+|..+ +...+..|+++|.||+..+ +++..++++|+++.|+++|.+.+..++..|+.+|.||+.+++
T Consensus       576 ~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~  655 (810)
T 3now_A          576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED  655 (810)
T ss_dssp             HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred             hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence              137999999999865 4556779999999999875 678999999999999999999999999999999999999999


Q ss_pred             hHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH-cCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          550 AKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR-LGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       550 ~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~-~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      .+..+.+ .|+++.|+.++.+.+..+++.|+++|.+++.+++..+..+++ .|+++.|+.++.+++..+++.|.++|.++
T Consensus       656 ~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL  735 (810)
T 3now_A          656 VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM  735 (810)
T ss_dssp             HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            9888886 689999999999999999999999999999988888888888 89999999999999999999999999998


Q ss_pred             hcc
Q 006669          628 RKL  630 (636)
Q Consensus       628 ~~~  630 (636)
                      ...
T Consensus       736 ~~~  738 (810)
T 3now_A          736 INA  738 (810)
T ss_dssp             HTT
T ss_pred             HhC
Confidence            653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=1.2e-27  Score=253.90  Aligned_cols=245  Identities=20%  Similarity=0.221  Sum_probs=219.9

Q ss_pred             CCHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCChHHHHHHHH
Q 006669          349 GDVVAIEALVRKLSS-----------RSVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLLTTDDVMTQEHAVT  416 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s-----------~~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL~s~d~~~~e~Av~  416 (636)
                      .+.++++.|+..|.+           .+++.|..|+..|.+|+..++.+|..+.. .|+||.|+.+|++++.++++.|++
T Consensus        70 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~  149 (354)
T 3nmw_A           70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS  149 (354)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHH
Confidence            345689999999952           24678999999999999988889988865 466999999999999999999999


Q ss_pred             HHHHhhhC--cchHHHHHHhCChHHHHHHH-hcCcHHHHHHHHHHHHHccC-CCchhHHHH-hcCchHHHHhhhccCCH-
Q 006669          417 AILNLSIY--ENNKGLIMLAGAIPSIVQIL-RAGSMEARENAAATLFSLSL-LDENKIIIG-ASGAIPALVDLLQNGST-  490 (636)
Q Consensus       417 aL~nLs~~--~~~k~~I~~~G~I~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~LL~~~~~-  490 (636)
                      +|.||+..  +++|..|.+.|+|++|+++| ++++.+++++|+.+|+||+. .++++..|+ ..|+++.|+.+|..+++ 
T Consensus       150 aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~  229 (354)
T 3nmw_A          150 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT  229 (354)
T ss_dssp             HHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred             HHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence            99999984  57899999999999999975 56789999999999999998 668899998 56999999999987754 


Q ss_pred             ---HHHHHHHHHHHhhhh----ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHH
Q 006669          491 ---RGRKDAATALFNLCI----YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPV  562 (636)
Q Consensus       491 ---~~k~~A~~aL~nL~~----~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~  562 (636)
                         .+++.|+++|.||+.    +++++..++++|+++.|+++|.+++..+++.|+++|+||+. +++++..+.+.|+|+.
T Consensus       230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~  309 (354)
T 3nmw_A          230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM  309 (354)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence               589999999999996    67889999999999999999999999999999999999994 7889999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHhhccChHHH
Q 006669          563 LIVLLRTGLPRNKENAAAILLSLCKRDTENL  593 (636)
Q Consensus       563 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~  593 (636)
                      |+++|+++++++++.|+++|.+|+.+++...
T Consensus       310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          310 LKNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999877543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.95  E-value=3e-27  Score=258.35  Aligned_cols=281  Identities=20%  Similarity=0.210  Sum_probs=245.2

Q ss_pred             CCHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCH----------HHHHHhhcCC
Q 006669          349 GDVVAIEALVRKLSS------------RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAI----------PVLVNLLTTD  406 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s------------~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i----------~~Lv~lL~s~  406 (636)
                      ...+.+|.||+.|+.            ++++.+.+|+++|.+++..+++......+.|++          +.+++++.+.
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            456789999999986            337999999999999999998888888888887          6677777654


Q ss_pred             C--hH-----HHH-------HHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhc-----------CcHHHHHHHHHHHHH
Q 006669          407 D--VM-----TQE-------HAVTAILNLSIYENNKGLIMLAGAIPSIVQILRA-----------GSMEARENAAATLFS  461 (636)
Q Consensus       407 d--~~-----~~e-------~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~-----------~~~e~~~~Aa~~L~~  461 (636)
                      .  .+     +.+       +|+++|.|++.++++|..|.+.|++++|+.+|..           .++.++.+|+++|.|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n  226 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN  226 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence            2  11     344       9999999999999999999999999999999952           247789999999999


Q ss_pred             ccCCCc-hhHHHHhc-CchHHHHhhhccCCHHHHHHHHHHHHhhhhc--cchHHHHHHhchHHHHHHHh-cCCCHHHHHH
Q 006669          462 LSLLDE-NKIIIGAS-GAIPALVDLLQNGSTRGRKDAATALFNLCIY--MGNKGRAVRAGIISALLKML-TDSRNCMVDE  536 (636)
Q Consensus       462 Ls~~~~-~~~~i~~~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~--~~n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~  536 (636)
                      |+..++ ++..+... |+||+|+.+|++++++++..|+++|.||+..  +++|..+++.|+|+.|+++| .+.+..+++.
T Consensus       227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~  306 (458)
T 3nmz_A          227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS  306 (458)
T ss_dssp             HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred             HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence            998876 66666554 7799999999999999999999999999985  46889999999999999985 5578899999


Q ss_pred             HHHHHHHHhc-ChhhHHHHH-hcCcHHHHHHHHcCCCH----HHHHHHHHHHHHhhc---cChHHHHHHHHcCChHHHHH
Q 006669          537 ALTILSVLAS-NPEAKIAIV-KASTIPVLIVLLRTGLP----RNKENAAAILLSLCK---RDTENLACISRLGAVIPLTE  607 (636)
Q Consensus       537 Al~~L~~La~-~~~~~~~i~-~~g~i~~Lv~lL~~~s~----~~ke~A~~~L~~L~~---~~~~~~~~i~~~G~i~~L~~  607 (636)
                      |+.+|+||+. +++++..|. ..|+++.|+.+|.++++    .++++|+++|.+|+.   .+++++..+.+.|+++.|+.
T Consensus       307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~  386 (458)
T 3nmz_A          307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ  386 (458)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence            9999999999 778898888 68999999999987654    489999999999997   68889999999999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHHhhc
Q 006669          608 LTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       608 Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++.+++..+++.|.++|.+|..
T Consensus       387 LL~~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          387 HLKSHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHHS
T ss_pred             HHcCCChHHHHHHHHHHHHHHc
Confidence            9999999999999999999984

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=1.6e-26  Score=257.83  Aligned_cols=280  Identities=18%  Similarity=0.230  Sum_probs=251.8

Q ss_pred             CHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cch
Q 006669          350 DVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENN  427 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~  427 (636)
                      +.|.+|.||++|++ .+++.|..|+++|.+++.++++++..+++.|+||.|+.+|++++..+++.|+++|.||+.+ +..
T Consensus        98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B           98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            45789999999975 5689999999999999999999999999999999999999999999999999999999984 677


Q ss_pred             HHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHH
Q 006669          428 KGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALF  501 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~  501 (636)
                      +..+.+.|++++|+.+|.+.     ......+++++|.+++........+.. .++++.|+.++.+++++++..|+++|.
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~  257 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  257 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            88999999999999999764     346788999999999887655444433 489999999999999999999999999


Q ss_pred             hhhhccchH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 006669          502 NLCIYMGNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAA  579 (636)
Q Consensus       502 nL~~~~~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~  579 (636)
                      +|+....++ ..+++.|+++.|+++|.+.+..++..|+.+|.|++.. +..+..+.+.|+++.|+.+|.+.++.+++.|+
T Consensus       258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~  337 (510)
T 3ul1_B          258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  337 (510)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred             HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence            999877655 4556799999999999999999999999999999874 55677888999999999999999999999999


Q ss_pred             HHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          580 AILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       580 ~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++|.+++.++++....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus       338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999864

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=1.2e-26  Score=267.28  Aligned_cols=283  Identities=14%  Similarity=0.126  Sum_probs=254.4

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      +.++++.|+++|+++++.+|..|++.|.+++. ++++|..+++.|++|+|+.+|.+++...+++|+++|.||+.+.+...
T Consensus       493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~  571 (810)
T 3now_A          493 NEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV  571 (810)
T ss_dssp             HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence            44689999999999999999999999999996 67899999999999999999999999999999999999998543332


Q ss_pred             HH---HHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh
Q 006669          430 LI---MLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLC  504 (636)
Q Consensus       430 ~I---~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~  504 (636)
                      .+   ...|++++|+.+|.++ +...+..|+++|.||+..+ +++..|.+.|+++.|+.+|.++++.+++.|+++|.||+
T Consensus       572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa  651 (810)
T 3now_A          572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV  651 (810)
T ss_dssp             HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred             hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            22   1246999999999876 4566778999999999874 67889999999999999999999999999999999999


Q ss_pred             hccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHH
Q 006669          505 IYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVK-ASTIPVLIVLLRTGLPRNKENAAAI  581 (636)
Q Consensus       505 ~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~  581 (636)
                      .+++.+..+++ .|+++.|+.++.+.+..++..|+++|++|+. +++....+++ .|+++.|+.+|.+++...++.|+++
T Consensus       652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a  731 (810)
T 3now_A          652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI  731 (810)
T ss_dssp             TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence            99888888886 7999999999999999999999999999999 7888888888 8999999999999999999999999


Q ss_pred             HHHhhccChHHHHHHHHcCChHHHHHhhhcC---CHHHHHHHHHHHHHhhccccc
Q 006669          582 LLSLCKRDTENLACISRLGAVIPLTELTKSG---TERAKRKATSLLEHLRKLPQL  633 (636)
Q Consensus       582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g---~~~~k~kA~~lL~~l~~~~~~  633 (636)
                      |.|++.++++....+.+.|++++|..+++..   ++++.+.|..+|+.+-++-.+
T Consensus       732 L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~  786 (810)
T 3now_A          732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII  786 (810)
T ss_dssp             HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence            9999988888889999999999999998654   789999999999999766543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=4.4e-26  Score=255.42  Aligned_cols=280  Identities=18%  Similarity=0.226  Sum_probs=253.0

Q ss_pred             CHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch
Q 006669          350 DVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN  427 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~  427 (636)
                      +.+.++.||+.|+. .+++.|..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+++|.||+. ++.+
T Consensus       117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence            45689999999974 568999999999999999999999999999999999999999999999999999999998 5678


Q ss_pred             HHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCchhHHHHh-cCchHHHHhhhccCCHHHHHHHHHHHH
Q 006669          428 KGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDENKIIIGA-SGAIPALVDLLQNGSTRGRKDAATALF  501 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~  501 (636)
                      +..+.+.|++++|+.+|..+     ......+++++|.+++........+.. .+++|.|+.++.+++++++.+|+++|.
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~  276 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  276 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999999999999999764     346788999999999887655444433 489999999999999999999999999


Q ss_pred             hhhhccchH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 006669          502 NLCIYMGNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAA  579 (636)
Q Consensus       502 nL~~~~~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~  579 (636)
                      +|+...+++ ..+++.|+++.|+++|.+.+..++..|+.+|.|++.. +.....+.+.|+++.|+.+|.++++.++..|+
T Consensus       277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~  356 (529)
T 3tpo_A          277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  356 (529)
T ss_dssp             HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred             HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence            999877654 4566799999999999999999999999999999874 55677888999999999999999999999999


Q ss_pred             HHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          580 AILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       580 ~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++|.+++.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus       357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999864

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=6.3e-26  Score=253.00  Aligned_cols=279  Identities=20%  Similarity=0.228  Sum_probs=247.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHH-hccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhh-CcchHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSL-SKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSI-YENNKG  429 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~L-a~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~-~~~~k~  429 (636)
                      .++.+|+.+.|.+.+.|..|+..+|.+ +++.......+++.|+||.||.+|++ +++.+|.+|+++|.||+. +++++.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            589999999999999999999999975 55444456789999999999999975 558999999999999987 677888


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCC-----HHHHHHHHHHHHhh
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGS-----TRGRKDAATALFNL  503 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~-----~~~k~~A~~aL~nL  503 (636)
                      .+++.|+||.|+.+|++++.++++.|+++|+||+.+. +++..+.+.|++++|+.+|...+     ......++++|.|+
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875 56788888899999999998653     45788999999999


Q ss_pred             hhccchHHHH-HHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh-HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHH
Q 006669          504 CIYMGNKGRA-VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA-KIAIVKASTIPVLIVLLRTGLPRNKENAAAI  581 (636)
Q Consensus       504 ~~~~~n~~~l-v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~-~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~  581 (636)
                      +.+......+ ...|++|.|++++.+.+.+++..|+++|.+|+..+.. ...+.+.|+++.|+.+|.+.++.++..|+.+
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9877654444 3478999999999999999999999999999987654 5567789999999999999999999999999


Q ss_pred             HHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          582 LLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       582 L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      |.+++..+......+.+.|+++.|+.++.++++.+++.|.++|.+|....
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~  347 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR  347 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence            99999999899999999999999999999999999999999999997643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=6.8e-25  Score=245.08  Aligned_cols=280  Identities=19%  Similarity=0.262  Sum_probs=256.2

Q ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH
Q 006669          351 VVAIEALVRKLSSRS-VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK  428 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k  428 (636)
                      .+.++.|++.|++++ ++.+..|++.|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  195 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR  195 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            357999999999887 99999999999999998899999999999999999999999999999999999999984 5678


Q ss_pred             HHHHHhCChHHHHHHH-hcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          429 GLIMLAGAIPSIVQIL-RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      ..+.+.|+++.|+.+| .+.++.++.+|+++|.+|+............|+++.|+.+|.++++.++..|+++|.+|+...
T Consensus       196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  275 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT  275 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            8899999999999999 566899999999999999987655555566799999999999999999999999999999877


Q ss_pred             chH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 006669          508 GNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTG-LPRNKENAAAILLS  584 (636)
Q Consensus       508 ~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~  584 (636)
                      +++ ..+++.|+++.|+.+|.+.+..++..|+.+|.+|+. .+.....+.+.|+++.|+.+|.++ ++.++..|+++|.+
T Consensus       276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~n  355 (528)
T 4b8j_A          276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN  355 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            654 567789999999999999999999999999999998 456777888999999999999988 89999999999999


Q ss_pred             hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      ++..++.....+...|+++.|+.++.++++.+++.|.++|.++...
T Consensus       356 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            9998888888999999999999999999999999999999998764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=5.3e-25  Score=220.29  Aligned_cols=238  Identities=29%  Similarity=0.329  Sum_probs=222.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~~I  431 (636)
                      .++.|++.|.+++++.+..|+..|.+++..+++++..+.+.|+++.|+.+|++++..++..|+.+|.||+.+ ++++..+
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            589999999999999999999999999998888999999999999999999999999999999999999996 8889999


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHcc-CCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-h
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLS-LLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-N  509 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n  509 (636)
                      .+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.++.++++.++..++++|.||+...+ +
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  162 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA  162 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999 556788888889999999999999999999999999999998654 4


Q ss_pred             HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669          510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR  588 (636)
Q Consensus       510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  588 (636)
                      +..+++.|+++.|++++.+.++.++..|+.+|.+|+. +++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+..
T Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence            5788899999999999999999999999999999998 566788889999999999999999999999999999999976


Q ss_pred             Ch
Q 006669          589 DT  590 (636)
Q Consensus       589 ~~  590 (636)
                      .+
T Consensus       243 ~~  244 (252)
T 4hxt_A          243 GW  244 (252)
T ss_dssp             CB
T ss_pred             CC
Confidence            53

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=1.3e-24  Score=243.48  Aligned_cols=282  Identities=19%  Similarity=0.233  Sum_probs=250.7

Q ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC-----hHHHHHHHHHHHHhhh
Q 006669          349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD-----VMTQEHAVTAILNLSI  423 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d-----~~~~e~Av~aL~nLs~  423 (636)
                      .+.++++.|+.+|.+++.+++..|+++|.+++.+++++|..+.+.|+++.|+.+|...+     ...+.+++++|.|++.
T Consensus       159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  238 (529)
T 3tpo_A          159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  238 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence            34568999999999999999999999999999999999999999999999999998654     3467899999999998


Q ss_pred             CcchH-HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH-HHHhcCchHHHHhhhccCCHHHHHHHHHHHH
Q 006669          424 YENNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAATALF  501 (636)
Q Consensus       424 ~~~~k-~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~  501 (636)
                      +.... ......|+++.|+.+|.+++++++..|+++|.+++..+..+. .+...|+++.|+.+|.+++..++..++.+|.
T Consensus       239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~  318 (529)
T 3tpo_A          239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  318 (529)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence            65443 333447899999999999999999999999999998776554 4566799999999999999999999999999


Q ss_pred             hhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 006669          502 NLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAA  579 (636)
Q Consensus       502 nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~  579 (636)
                      |++... .++..+++.|+++.|+.+|.+++..++..|+++|.||+. +++.+..+.+.|++|.|+.++.+++..++..|+
T Consensus       319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~  398 (529)
T 3tpo_A          319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA  398 (529)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence            998765 557788899999999999999999999999999999998 455677888999999999999999999999999


Q ss_pred             HHHHHhhcc-ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          580 AILLSLCKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       580 ~~L~~L~~~-~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      ++|.+++.+ +++.+..+++.|++++|+.++.+.++.+...+..+|.+|-+.
T Consensus       399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            999999875 567788899999999999999999999999999999988653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=1.1e-24  Score=217.94  Aligned_cols=238  Identities=28%  Similarity=0.314  Sum_probs=222.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-chHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHH
Q 006669          394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE-NNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKII  471 (636)
Q Consensus       394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~-~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~  471 (636)
                      |+++.|+.+|.++++.++..|+.+|.+++... +++..+.+.|+++.|+.+|++++++++..|+++|.+++.. ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            67899999999999999999999999999854 5889999999999999999999999999999999999988 678888


Q ss_pred             HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhh-hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hh
Q 006669          472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLC-IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PE  549 (636)
Q Consensus       472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~-~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~  549 (636)
                      +.+.|+++.|+.+|+++++.++..|+++|.||+ ..++++..+++.|+++.|++++.+.++.++..|+.+|.+|+.. ++
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999 4557888999999999999999999999999999999999984 55


Q ss_pred             hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          550 AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       550 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      .+..+.+.|+++.|+.++.++++.++..|+++|.+++..++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence            56788899999999999999999999999999999999888999999999999999999999999999999999999986


Q ss_pred             cc
Q 006669          630 LP  631 (636)
Q Consensus       630 ~~  631 (636)
                      ..
T Consensus       242 ~~  243 (252)
T 4hxt_A          242 GG  243 (252)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=2.2e-24  Score=240.99  Aligned_cols=279  Identities=21%  Similarity=0.233  Sum_probs=252.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCC-hHHHHHHHHHHHHhhhC-cchH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTTDD-VMTQEHAVTAILNLSIY-ENNK  428 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s~d-~~~~e~Av~aL~nLs~~-~~~k  428 (636)
                      ..++.|++.|.+++++.+..|+..|+.+..... .++..+.+.|++|.|+.+|.+++ +.++..|+++|.+++.. ++++
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            358999999999999999999999999865543 67888899999999999999876 99999999999999994 7888


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhh-ccCCHHHHHHHHHHHHhhhhc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLL-QNGSTRGRKDAATALFNLCIY  506 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL~~~  506 (636)
                      ..+++.|+++.|+.+|.++++++++.|+++|.+|+... .++..+...|++++|+.+| .+.++.++..|+++|.+|+..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999998764 4678888889999999999 566899999999999999988


Q ss_pred             cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          507 MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       507 ~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                      .++.......|+++.|+++|.+.+..++..|+++|.+|+..++.+ ..+.+.|+++.|+.+|.+.++.++..|+++|.++
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            666666667999999999999999999999999999999876654 5778899999999999999999999999999999


Q ss_pred             hccChHHHHHHHHcCChHHHHHhhhcC-CHHHHHHHHHHHHHhhcc
Q 006669          586 CKRDTENLACISRLGAVIPLTELTKSG-TERAKRKATSLLEHLRKL  630 (636)
Q Consensus       586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g-~~~~k~kA~~lL~~l~~~  630 (636)
                      +.+++.....+.+.|+++.|+.++.++ ++.+++.|.++|.+|...
T Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~  359 (528)
T 4b8j_A          314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG  359 (528)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred             HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence            998888888899999999999999999 999999999999999753

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=4.1e-25  Score=222.14  Aligned_cols=235  Identities=25%  Similarity=0.313  Sum_probs=218.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I  431 (636)
                      ..+.+++.|.+++++.+..|+..|+++...+.+++..+.+.|+++.|+.+|+++++.++..|+.+|.|++. +++++..+
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            48899999999999999999999977655577889999999999999999999999999999999999998 68889999


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh-HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-ch
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK-IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GN  509 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n  509 (636)
                      .+.|+++.|+.+|++++++++..|+++|.+|+..++++ ..+.+.|+++.|+.+|.++++.++..|+++|.||+... ++
T Consensus        93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  172 (252)
T 4db8_A           93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  172 (252)
T ss_dssp             HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence            99999999999999999999999999999999999988 78888899999999999999999999999999999865 56


Q ss_pred             HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      +..+++.|+++.|++++.+++..++..|+.+|.+|+. +++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus       173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            7778889999999999999999999999999999995 66778888999999999999999999999999999999985

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=1.3e-24  Score=218.49  Aligned_cols=236  Identities=25%  Similarity=0.331  Sum_probs=219.7

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccC-CCchhHH
Q 006669          394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSL-LDENKII  471 (636)
Q Consensus       394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~  471 (636)
                      ...+.++..|++++++++..|+.+|.++.. +++++..+.+.|+++.|+.+|++++++++..|+++|.+++. .++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            468899999999999999999999977554 67778889999999999999999999999999999999997 5678888


Q ss_pred             HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hh
Q 006669          472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PE  549 (636)
Q Consensus       472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~  549 (636)
                      +.+.|+++.|+.+|+++++.++..|+++|.||+...+++ ..+++.|+++.|+++|.+++..++..|+++|.+|+.. ++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999999999999999999888 8889999999999999999999999999999999984 56


Q ss_pred             hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          550 AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       550 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      .+..+.+.|+++.|+.++.++++.+++.|+++|.+++..+++....+.+.|+++.|+.++.++++.+++.|.++|.+|.+
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            77788889999999999999999999999999999999899999999999999999999999999999999999999875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.93  E-value=9.6e-24  Score=236.07  Aligned_cols=279  Identities=18%  Similarity=0.211  Sum_probs=255.0

Q ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH
Q 006669          351 VVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK  428 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k  428 (636)
                      .+.++.|++.|.++ +++++..|+..|.+++..+++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+.+ +.++
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~  208 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  208 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence            35799999999987 899999999999999998888999999999999999999999999999999999999985 6778


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      ..+...|+++.|+.+|.+.+++++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+...
T Consensus       209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~  288 (530)
T 1wa5_B          209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  288 (530)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence            88889999999999999999999999999999999765 44455556799999999999999999999999999999765


Q ss_pred             -chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          508 -GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       508 -~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                       +....+++.|+++.|+.+|.+.+..++..|+.+|.+++.. +.....+.+.|+++.|+.+|.++++.++..|+++|.++
T Consensus       289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l  368 (530)
T 1wa5_B          289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI  368 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             4577788899999999999999999999999999999975 55667778889999999999999999999999999999


Q ss_pred             hccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +..+++....+++.|+++.|+.++.++++.++..|.++|.++..
T Consensus       369 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~  412 (530)
T 1wa5_B          369 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  412 (530)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            99888888888899999999999999999999999999999965

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.93  E-value=2.4e-23  Score=232.86  Aligned_cols=278  Identities=19%  Similarity=0.226  Sum_probs=252.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCC-ChHHHHHHHHHHHHhhhC-cchHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKR-STDNRIIIADAGAIPVLVNLLTTD-DVMTQEHAVTAILNLSIY-ENNKG  429 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~e~g~i~~Lv~lL~s~-d~~~~e~Av~aL~nLs~~-~~~k~  429 (636)
                      .++.|++.|++++++.+..|+..|+.+... +..++..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.. ++.+.
T Consensus        88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~  167 (530)
T 1wa5_B           88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  167 (530)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            489999999999999999999999998643 345667788999999999999987 899999999999999984 56778


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-  507 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-  507 (636)
                      .+++.|+++.|+.+|+++++++++.|+++|.+|+... +++..+...|+++.|+.++.+.++.++..|+++|.+|+.+. 
T Consensus       168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  247 (530)
T 1wa5_B          168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK  247 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence            8889999999999999999999999999999999874 57788888899999999999989999999999999999876 


Q ss_pred             chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      ++.......|+++.|+.+|.+.+..++..|+++|.+|+.. ++....+.+.|+++.|+.+|.+.++.++..|+++|.+++
T Consensus       248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~  327 (530)
T 1wa5_B          248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  327 (530)
T ss_dssp             SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence            5666667789999999999999999999999999999985 556778888999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          587 KRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       587 ~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      .+++.....+...|+++.|+.++.++++.++..|.++|.++...
T Consensus       328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~  371 (530)
T 1wa5_B          328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG  371 (530)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            98888888889999999999999999999999999999999754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=3.2e-23  Score=225.48  Aligned_cols=277  Identities=17%  Similarity=0.197  Sum_probs=250.1

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHH
Q 006669          352 VAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKG  429 (636)
Q Consensus       352 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~  429 (636)
                      +.++.|++.|+++ +++.+..|+..|.+++..+++++..+.+.|++|.|+.+|+++++.+++.|+.+|.+++.+ +..+.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            5799999999998 899999999999999998888888888999999999999999999999999999999985 56788


Q ss_pred             HHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCC--chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669          430 LIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLD--ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY  506 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~  506 (636)
                      .+.+.|+++.|+.+|.+ .+.+++..|+++|.+++...  ..+..+. .++++.|+.++.++++.++..++++|.+|+..
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            88899999999999996 68999999999999998664  2222222 68999999999999999999999999999986


Q ss_pred             c-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669          507 M-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS  584 (636)
Q Consensus       507 ~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  584 (636)
                      . +++..+++.|+++.|+++|.+.+..++..|+.+|.+++...+ ....+.+.|+++.|+.+|.++++..+..|+++|.+
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~  302 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN  302 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            5 567778889999999999999999999999999999998644 45667888999999999999899999999999999


Q ss_pred             hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++..
T Consensus       303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence            999888888888899999999999999999999999999999964

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=7.5e-23  Score=222.59  Aligned_cols=278  Identities=21%  Similarity=0.227  Sum_probs=249.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCc--chH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYE--NNK  428 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~--~~k  428 (636)
                      +.++.|++.|++++++++..|+..|.+++..+++++..+.+.|+++.|+.+|.+ .+..++..|+.+|.+|+.+.  ..+
T Consensus       107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~  186 (450)
T 2jdq_A          107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE  186 (450)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence            579999999999999999999999999999888999999999999999999985 68999999999999999743  333


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      ..+. .|+++.|+.++++++++++..++++|.+|+... +++..+...|+++.|+.+|.+.++.++..|+++|.+|+...
T Consensus       187 ~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  265 (450)
T 2jdq_A          187 FAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD  265 (450)
T ss_dssp             GGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence            3333 789999999999999999999999999999865 45666777899999999999999999999999999999876


Q ss_pred             ch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          508 GN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       508 ~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                      +. ...+++.|+++.|++++.+++..++..|+++|.+++. +++....+.+.|+++.|+.+|.++++.++..|+++|.++
T Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l  345 (450)
T 2jdq_A          266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA  345 (450)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            55 4557788999999999999999999999999999996 567777888899999999999999999999999999999


Q ss_pred             hcc-ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          586 CKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       586 ~~~-~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      +.. +++....+.+.|+++.|+.++.++++++++.|.++|.++...
T Consensus       346 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          346 TSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            976 667777788999999999999999999999999999988653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.91  E-value=4.7e-23  Score=229.13  Aligned_cols=278  Identities=26%  Similarity=0.285  Sum_probs=248.7

Q ss_pred             CHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cch
Q 006669          350 DVVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENN  427 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~  427 (636)
                      ..+.++.|++.|.++ +++.+..|+..|++++.. ++++..+.+.|++|.|+.+|+++++.++..|+.+|.||+.+ +..
T Consensus        57 ~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch
Confidence            346899999999754 899999999999999974 66999999999999999999999999999999999999985 567


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccCC-HHHHHHHHHHHHhhhh
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNGS-TRGRKDAATALFNLCI  505 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~~-~~~k~~A~~aL~nL~~  505 (636)
                      +..+.+.|+++.|+.+|++++++.+..++.+|.+++.. ++++..+.+.|+++.|+.+|++++ ...+..++.+|.||+.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999875 568888899999999999999875 4556678889999999


Q ss_pred             ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          506 YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       506 ~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                      +++++..+++.|+++.|++++.+.+..++..++++|.+|+.......  ...++++.|+.++.+.++.+++.|+++|.+|
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L  293 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNL  293 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998654322  1237899999999999999999999999999


Q ss_pred             hccChHHHHHHHHcCChHHHHHhhhc-C-CHHHHHHHHHHHHHhhcc
Q 006669          586 CKRDTENLACISRLGAVIPLTELTKS-G-TERAKRKATSLLEHLRKL  630 (636)
Q Consensus       586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~-g-~~~~k~kA~~lL~~l~~~  630 (636)
                      +.++++.+..+.+.|+++.|+.++.+ + .+.++..|..+|.+|...
T Consensus       294 ~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             hcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence            99888899999999999999999976 3 379999999999999753

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.91  E-value=1.1e-22  Score=226.08  Aligned_cols=280  Identities=21%  Similarity=0.199  Sum_probs=250.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKG  429 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~  429 (636)
                      .+.++.|++.|++++++.+..|+..|.+++..++.++..+.+.|++|.|+.+|.+++..++..++.+|.+|+. +++++.
T Consensus       100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~  179 (529)
T 1jdh_A          100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            3679999999999999999999999999999888889999999999999999999999999999999999998 578899


Q ss_pred             HHHHhCChHHHHHHHhcCc-HHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669          430 LIMLAGAIPSIVQILRAGS-MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~  508 (636)
                      .+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.++++..+..++++|.||+...+
T Consensus       180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  259 (529)
T 1jdh_A          180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence            9999999999999999875 566778899999999999999999999999999999999999999999999999997654


Q ss_pred             hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcC--CCHHHHHHHHHHHHHh
Q 006669          509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRT--GLPRNKENAAAILLSL  585 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L  585 (636)
                      ...  ...|+++.|++++.+.++.++..|+++|.+|+.+ ++++..+.+.|+++.|+++|.+  .++.+++.|+.+|.++
T Consensus       260 ~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl  337 (529)
T 1jdh_A          260 KQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL  337 (529)
T ss_dssp             TCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            322  2358999999999999999999999999999986 5689999999999999999975  3379999999999999


Q ss_pred             hccChH---HHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcccc
Q 006669          586 CKRDTE---NLACISRLGAVIPLTELTKSGT-ERAKRKATSLLEHLRKLPQ  632 (636)
Q Consensus       586 ~~~~~~---~~~~i~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~~~  632 (636)
                      +.++++   .+..+.+.|+++.|+.++.+++ +.+++.|.++|.++....+
T Consensus       338 ~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~  388 (529)
T 1jdh_A          338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  388 (529)
T ss_dssp             TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             HcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence            987543   4667889999999999999876 5999999999999986543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.90  E-value=1.2e-22  Score=232.89  Aligned_cols=279  Identities=23%  Similarity=0.230  Sum_probs=245.7

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcCC-ChHHHHHHHHHHHHhhhCcch
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTTD-DVMTQEHAVTAILNLSIYENN  427 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s~-d~~~~e~Av~aL~nLs~~~~~  427 (636)
                      +.+.++.|+.+|+++++.++..|+..|.+++.++ .++..+... |+++.|+++|.+. ++.++..|+.+|.+|+.++++
T Consensus        12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~   90 (644)
T 2z6h_A           12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   90 (644)
T ss_dssp             CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence            3457999999999999999999999999999865 467767654 8999999999865 899999999999999998889


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh-
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI-  505 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~-  505 (636)
                      +..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ +.+..+.+.|+++.|+.+|++++++.+..++.+|.+|+. 
T Consensus        91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~  170 (644)
T 2z6h_A           91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  170 (644)
T ss_dssp             HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999998774 566777788999999999999999888889999999996 


Q ss_pred             ccchHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH-----------------
Q 006669          506 YMGNKGRAVRAGIISALLKMLTDS-RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL-----------------  567 (636)
Q Consensus       506 ~~~n~~~lv~~g~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL-----------------  567 (636)
                      +++++..+++.|+++.|++++.+. ....++.++.+|.+|+.+++++..+.+.|+++.|+.++                 
T Consensus       171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n  250 (644)
T 2z6h_A          171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  250 (644)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            567899999999999999999874 46778899999999999999999998888777776554                 


Q ss_pred             ----------------------cCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CC-HHHHHHHHHH
Q 006669          568 ----------------------RTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GT-ERAKRKATSL  623 (636)
Q Consensus       568 ----------------------~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~-~~~k~kA~~l  623 (636)
                                            .+.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.++.+ ++ +.++..|..+
T Consensus       251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence                                  44567778888888888888778888889999999999999987 43 7999999999


Q ss_pred             HHHhhc
Q 006669          624 LEHLRK  629 (636)
Q Consensus       624 L~~l~~  629 (636)
                      |.+|..
T Consensus       331 L~nL~~  336 (644)
T 2z6h_A          331 LRHLTS  336 (644)
T ss_dssp             HHHHTS
T ss_pred             HHHHhc
Confidence            999975

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=2.6e-23  Score=206.84  Aligned_cols=194  Identities=19%  Similarity=0.227  Sum_probs=176.0

Q ss_pred             HHHHHHHHhcCCCH--HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669          353 AIEALVRKLSSRSV--EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKG  429 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~--~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~  429 (636)
                      .++.||+.|.++++  +.|..|+..|++++..++++|..+.+.|+||.||.+|+++++.+|+.|+++|.||+. ++++|.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            59999999999988  889999999999999999999999999999999999999999999999999999998 689999


Q ss_pred             HHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc---c-------------CCHHH
Q 006669          430 LIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ---N-------------GSTRG  492 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~---~-------------~~~~~  492 (636)
                      .|.+.|+|++|+++|++ ++.+++++|+.+|++||..+++|..|++. ++++|++++.   .             .+..+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            99999999999999984 78999999999999999999999999874 7999999763   1             14689


Q ss_pred             HHHHHHHHHhhhhcc-chHHHHHH-hchHHHHHHHhcC------CCHHHHHHHHHHHHHHhcC
Q 006669          493 RKDAATALFNLCIYM-GNKGRAVR-AGIISALLKMLTD------SRNCMVDEALTILSVLASN  547 (636)
Q Consensus       493 k~~A~~aL~nL~~~~-~n~~~lv~-~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~  547 (636)
                      +.+|..+|+||+..+ ++|..+.+ .|+|+.|+.+++.      .+...+|.|+.+|.||+..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            999999999999855 88999988 5789999999964      3567899999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.90  E-value=8.1e-22  Score=225.91  Aligned_cols=280  Identities=21%  Similarity=0.192  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKG  429 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~  429 (636)
                      .+.++.|++.|+++++..+..|+..|.+++..++.++..+.+.|+++.|+.+|+++++.++..++.+|.+|+. +++++.
T Consensus        97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~  176 (644)
T 2z6h_A           97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  176 (644)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4679999999999999999999999999998888889899999999999999999998888889999999997 788899


Q ss_pred             HHHHhCChHHHHHHHhcCc-HHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669          430 LIMLAGAIPSIVQILRAGS-MEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~  508 (636)
                      .+.+.|+++.|+.+|++++ ...+..++.+|.+|+..++++..+.+.|+++.|+.++.+++...+..++++|.||+....
T Consensus       177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~  256 (644)
T 2z6h_A          177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  256 (644)
T ss_dssp             HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred             HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence            9999999999999999875 678889999999999999999999999999999999999999999999999999997653


Q ss_pred             hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCC-C-HHHHHHHHHHHHHh
Q 006669          509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTG-L-PRNKENAAAILLSL  585 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~-s-~~~ke~A~~~L~~L  585 (636)
                      ..  ....++++.|+++|.+.+..+++.|+++|.+|+.. ++++..+.+.|+++.|+.+|.+. + +.+++.|+.+|.+|
T Consensus       257 ~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL  334 (644)
T 2z6h_A          257 KQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL  334 (644)
T ss_dssp             TC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence            32  22248999999999999999999999999999985 57888999999999999999863 3 79999999999999


Q ss_pred             hccCh---HHHHHHHHcCChHHHHHhhhcCC-HHHHHHHHHHHHHhhcccc
Q 006669          586 CKRDT---ENLACISRLGAVIPLTELTKSGT-ERAKRKATSLLEHLRKLPQ  632 (636)
Q Consensus       586 ~~~~~---~~~~~i~~~G~i~~L~~Ll~~g~-~~~k~kA~~lL~~l~~~~~  632 (636)
                      +..++   ..+..+...|+++.|+.++.+.+ +.+++.|.++|.+|....+
T Consensus       335 ~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~  385 (644)
T 2z6h_A          335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  385 (644)
T ss_dssp             TSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             hcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence            97654   23455788999999999999875 6999999999999986543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=201.85  Aligned_cols=193  Identities=17%  Similarity=0.225  Sum_probs=173.9

Q ss_pred             CHHHHHHhhcCCCh--HHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhH
Q 006669          395 AIPVLVNLLTTDDV--MTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKI  470 (636)
Q Consensus       395 ~i~~Lv~lL~s~d~--~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~  470 (636)
                      .+|.||.+|+++++  .++..|+..|.+|+. +++++..|.+.|+||+||.+|+++++++++.|+++|.||+.. ++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999888  889999999999997 788999999999999999999999999999999999999984 67999


Q ss_pred             HHHhcCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhc----C------------CCHHH
Q 006669          471 IIGASGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLT----D------------SRNCM  533 (636)
Q Consensus       471 ~i~~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~----~------------~~~~~  533 (636)
                      .|.+.|+||+|+++|+ .++..+++.|+.+|+||+..+++|..+++. ++++|++++.    .            .+..+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            9999999999999998 478999999999999999999999999875 6999998763    1            25689


Q ss_pred             HHHHHHHHHHHhc-ChhhHHHHHhc-CcHHHHHHHHcCC------CHHHHHHHHHHHHHhhcc
Q 006669          534 VDEALTILSVLAS-NPEAKIAIVKA-STIPVLIVLLRTG------LPRNKENAAAILLSLCKR  588 (636)
Q Consensus       534 ~~~Al~~L~~La~-~~~~~~~i~~~-g~i~~Lv~lL~~~------s~~~ke~A~~~L~~L~~~  588 (636)
                      .+.|..+|.||+. ++++|..|.+. |+|+.|+.+++.+      +.+.+|+|+.+|.||+..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999999988 67999999985 6789999999852      468899999999999864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.88  E-value=1.7e-21  Score=227.86  Aligned_cols=271  Identities=24%  Similarity=0.256  Sum_probs=232.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .++.+++.|.+++.+.+..++..++..      ++..+. .|++|.|+.+|.++++.++++|+.+|.+|+.++.++..+.
T Consensus       116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~  188 (780)
T 2z6g_A          116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM  188 (780)
T ss_dssp             ----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence            588999999999988888888888744      344554 7999999999999999999999999999999888888887


Q ss_pred             H-hCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-h
Q 006669          433 L-AGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-N  509 (636)
Q Consensus       433 ~-~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n  509 (636)
                      . .|+++.|+++|+++ +++++.+|+.+|++|+..++++..+++.|+++.|+.+|+++++.++..|+++|.||+...+ .
T Consensus       189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred             hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence            5 58999999999876 8999999999999999998899999999999999999999999999999999999998764 5


Q ss_pred             HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHHHhhc
Q 006669          510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGL-PRNKENAAAILLSLCK  587 (636)
Q Consensus       510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~  587 (636)
                      +..+++.|+++.|+++|.+.+..+...++.+|.+++. +++++..+.+.|+++.|+.+|++++ ...++.|+.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            6666689999999999999899999999999999996 6889999999999999999999766 4566788999999996


Q ss_pred             cChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          588 RDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       588 ~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                       .+..+..+++.|+++.|+.++.++++..++.|.++|.+|.+..
T Consensus       349 -~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~  391 (780)
T 2z6g_A          349 -CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA  391 (780)
T ss_dssp             -STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             -ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence             5577888899999999999999999999999999999987643

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1e-21  Score=222.54  Aligned_cols=283  Identities=16%  Similarity=0.132  Sum_probs=239.4

Q ss_pred             CCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCh-------------------------------------h-hHH
Q 006669          348 SGDVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRST-------------------------------------D-NRI  388 (636)
Q Consensus       348 ~~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~-------------------------------------~-~r~  388 (636)
                      ..+.+.++.|++.+++ .+......++..|.+++...+                                     + ++.
T Consensus       372 ~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~  451 (778)
T 3opb_A          372 RSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEK  451 (778)
T ss_dssp             HHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHH
Confidence            3466778999999985 666678888888888875221                                     1 577


Q ss_pred             HHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHH---HHHHHHHHHHHccCC
Q 006669          389 IIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSME---ARENAAATLFSLSLL  465 (636)
Q Consensus       389 ~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e---~~~~Aa~~L~~Ls~~  465 (636)
                      .+.++|+||.|+.+++++++.+++.|+++|.||+.++++|..++++|++++|+.+|.+++..   .+.+|+.+|.+|+..
T Consensus       452 ~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis  531 (778)
T 3opb_A          452 YILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF  531 (778)
T ss_dssp             HTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc
Confidence            88899999999999999999999999999999999999999999999999999999988654   899999999999876


Q ss_pred             CchhHHHHh---cCchHHHHhhhccC--CH------------HHHHHHHHHHHhhhhccch-----HHHHHHh-chHHHH
Q 006669          466 DENKIIIGA---SGAIPALVDLLQNG--ST------------RGRKDAATALFNLCIYMGN-----KGRAVRA-GIISAL  522 (636)
Q Consensus       466 ~~~~~~i~~---~g~i~~Lv~LL~~~--~~------------~~k~~A~~aL~nL~~~~~n-----~~~lv~~-g~v~~L  522 (636)
                      .+....+..   .|++++|++||..+  ..            ..+..|+.||.||+..++|     |.++++. |+++.|
T Consensus       532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L  611 (778)
T 3opb_A          532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI  611 (778)
T ss_dssp             SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred             CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence            655554432   29999999999832  11            3488999999999998743     7889984 999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhc------CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHH
Q 006669          523 LKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKA------STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC  595 (636)
Q Consensus       523 v~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~------g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~  595 (636)
                      .++|.+++..++..|+.++.||+.+++++ ..+...      +.++.|+.++.+++..+|..|+++|.+++..++..+..
T Consensus       612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~  691 (778)
T 3opb_A          612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE  691 (778)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99999999999999999999999999875 344322      24889999999999999999999999998888888888


Q ss_pred             HHHc-CChHHHHHhhhc--CCHHHHHHHHHHHHHhhcc
Q 006669          596 ISRL-GAVIPLTELTKS--GTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       596 i~~~-G~i~~L~~Ll~~--g~~~~k~kA~~lL~~l~~~  630 (636)
                      +++. ++++.|+.++++  .++.++..+..++.+|..+
T Consensus       692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            8876 899999999999  8999999999999999863

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.88  E-value=2e-21  Score=227.31  Aligned_cols=277  Identities=26%  Similarity=0.298  Sum_probs=246.9

Q ss_pred             CHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cch
Q 006669          350 DVVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENN  427 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~  427 (636)
                      ..+.++.|++.|+++ +.+.+..|+..|++++. +.+++..+.+.|+|+.|+.+|+++++.++..|+.+|.||+.+ +..
T Consensus       190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred             ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence            456899999999755 89999999999999997 467899999999999999999999999999999999999985 566


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccCCH-HHHHHHHHHHHhhhh
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNGST-RGRKDAATALFNLCI  505 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~~~-~~k~~A~~aL~nL~~  505 (636)
                      +..+.+.|+++.|+.+|++++..++..++.+|.+|+.. ++++..+.+.|+++.|+.+|++++. ..+..++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            77788899999999999999999999999999999864 5688888888999999999998764 456678999999999


Q ss_pred             ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          506 YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       506 ~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                      +..++..+++.|+++.|+.++.+.+..++..|+++|.+|+......  ....++++.|+.+|.+.++.+++.|+++|.+|
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L  426 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  426 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999989999999999999999865331  11246899999999999999999999999999


Q ss_pred             hccChHHHHHHHHcCChHHHHHhhhc-CC-HHHHHHHHHHHHHhhc
Q 006669          586 CKRDTENLACISRLGAVIPLTELTKS-GT-ERAKRKATSLLEHLRK  629 (636)
Q Consensus       586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~-~~~k~kA~~lL~~l~~  629 (636)
                      +.++++.+..+.+.|+++.|+.++.+ ++ +.++..|..+|.+|..
T Consensus       427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            99888899999999999999999986 43 4899999999999975

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=3.4e-21  Score=188.09  Aligned_cols=195  Identities=25%  Similarity=0.288  Sum_probs=179.9

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccC-CCchhH
Q 006669          393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSL-LDENKI  470 (636)
Q Consensus       393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~~~  470 (636)
                      .|..+.|+.+|+++++.++..|+.+|.+|+. +++++..+.+.|+++.|+.+|++++++++..|+++|.+++. .++++.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            4789999999999999999999999999996 67788899999999999999999999999999999999995 456788


Q ss_pred             HHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-h
Q 006669          471 IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-P  548 (636)
Q Consensus       471 ~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~  548 (636)
                      .+.+.|+++.|+.+|.++++.++..|+++|.||+... +++..+++.|+++.|++++.+++..++..|+++|.+++.. +
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            8888999999999999999999999999999999765 4567788999999999999999999999999999999997 7


Q ss_pred             hhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          549 EAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       549 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      +.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            788889999999999999999999999999999999985

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=3.9e-21  Score=187.72  Aligned_cols=196  Identities=24%  Similarity=0.313  Sum_probs=181.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGL  430 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~  430 (636)
                      +..+.|+.+|++.+++.+..|+..|.+++..+++++..+.+.|+++.|+.+|+++++.+++.|+.+|.||+. ++.++..
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            457889999999999999999999999998899999999999999999999999999999999999999996 6788899


Q ss_pred             HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc-cc
Q 006669          431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MG  508 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~-~~  508 (636)
                      +.+.|+++.|+.+|+++++.++..|+++|.+|+..++ .+..+.+.|+++.|+.+|+++++.++..|+++|.||+.. ++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~  171 (210)
T 4db6_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (210)
T ss_dssp             HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence            9999999999999999999999999999999997654 556777889999999999999999999999999999987 56


Q ss_pred             hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669          509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN  547 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  547 (636)
                      ++..+++.|+++.|++++.+.+..+++.|+.+|.+|+.+
T Consensus       172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            788888999999999999999999999999999999863

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.7e-19  Score=201.68  Aligned_cols=274  Identities=16%  Similarity=0.168  Sum_probs=227.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcc----
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYEN----  426 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~----  426 (636)
                      .++.+++.|.+++.+.+..|+..|..++. +++.|..+++. |+++.|+.++++ .+..+...++.+|.||+.+.+    
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~  413 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX  413 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence            57788888888887889999999999997 56778888774 779999999985 788899999999999986211    


Q ss_pred             -----------------------------------hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHH
Q 006669          427 -----------------------------------NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKII  471 (636)
Q Consensus       427 -----------------------------------~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~  471 (636)
                                                         ++..+.++|+++.|+.+++++++.+++.|+++|.+|+.+.++|..
T Consensus       414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~  493 (778)
T 3opb_A          414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ  493 (778)
T ss_dssp             CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred             hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence                                               455667899999999999999999999999999999999999999


Q ss_pred             HHhcCchHHHHhhhccCCHH---HHHHHHHHHHhhhhccchHHHHH--H-hchHHHHHHHhcC-CC-H------------
Q 006669          472 IGASGAIPALVDLLQNGSTR---GRKDAATALFNLCIYMGNKGRAV--R-AGIISALLKMLTD-SR-N------------  531 (636)
Q Consensus       472 i~~~g~i~~Lv~LL~~~~~~---~k~~A~~aL~nL~~~~~n~~~lv--~-~g~v~~Lv~lL~~-~~-~------------  531 (636)
                      +++.|++++|+.+|.+++..   ++..|+.||.+|....+....+-  . .|+|++|+++|.. +. .            
T Consensus       494 lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~  573 (778)
T 3opb_A          494 LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL  573 (778)
T ss_dssp             HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred             HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence            99999999999999988654   89999999999987655443331  1 4899999999972 11 1            


Q ss_pred             HHHHHHHHHHHHHhcCh-----hhHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHH-HHHHHc-----
Q 006669          532 CMVDEALTILSVLASNP-----EAKIAIVKA-STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENL-ACISRL-----  599 (636)
Q Consensus       532 ~~~~~Al~~L~~La~~~-----~~~~~i~~~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~-~~i~~~-----  599 (636)
                      --+..|+.+|.|||+.+     +.|..|++. |+++.|..+|.+.++.++..|++++.||+. +++.+ ..+...     
T Consensus       574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~  652 (778)
T 3opb_A          574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQS  652 (778)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHH
T ss_pred             HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchh
Confidence            12678999999999986     347888885 999999999999999999999999999997 44433 233221     


Q ss_pred             -CChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          600 -GAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       600 -G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                       +.++.|+.|+.+++...|+.|.++|.++.
T Consensus       653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          653 LRNFNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence             23789999999999999999999999984

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.80  E-value=3.2e-18  Score=176.87  Aligned_cols=221  Identities=19%  Similarity=0.127  Sum_probs=185.0

Q ss_pred             hHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHH-HHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhh
Q 006669          408 VMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQ-ILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLL  485 (636)
Q Consensus       408 ~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL  485 (636)
                      .+.+..|+..|.+++.+.++...+.+.|++++|+. +|+++++++++.|+++|.+++.++ +++..+.+.|++++|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            35677888999999988889998999999999999 999999999999999999998765 4777888889999999999


Q ss_pred             ccC-CHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHH
Q 006669          486 QNG-STRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPV  562 (636)
Q Consensus       486 ~~~-~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~  562 (636)
                      +++ +..+++.|+++|.||+.+. ++...++++|+++.|+.+|.+++..++..|+++|.+|+. .++.+..+++.|+++.
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence            964 7899999999999999765 456778889999999999999999999999999999987 5778899999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHc--CChHHH---HHhhhcC--CHHHHHHHHHHHHHhh
Q 006669          563 LIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRL--GAVIPL---TELTKSG--TERAKRKATSLLEHLR  628 (636)
Q Consensus       563 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~--G~i~~L---~~Ll~~g--~~~~k~kA~~lL~~l~  628 (636)
                      |+.+|.+.++.+++.|+.+|.+++...+.........  .....|   .+-++..  .....++|..++..+-
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999998765554443321  111111   2223322  4677888988888664

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.80  E-value=2.7e-20  Score=155.69  Aligned_cols=74  Identities=30%  Similarity=0.385  Sum_probs=69.5

Q ss_pred             CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhccc
Q 006669          252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNI  326 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~  326 (636)
                      ..+|++|.||||+++|+|||+++|||+|||.||++|+.. +.+||.|++++....+.||..++++|+.|+..|+.
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~   82 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS   82 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence            467999999999999999999999999999999999984 68999999999999999999999999999988753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.80  E-value=4.5e-20  Score=158.97  Aligned_cols=74  Identities=30%  Similarity=0.402  Sum_probs=69.8

Q ss_pred             CCCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcc
Q 006669          251 VLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHN  325 (636)
Q Consensus       251 ~~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~  325 (636)
                      ...+|++|.||||+++|+|||+++|||||||.||++||. ++.+||.|++++...+++||..+++.|+.|+..|+
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            346799999999999999999999999999999999998 47899999999999999999999999999999876

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.80  E-value=5.7e-20  Score=157.71  Aligned_cols=76  Identities=29%  Similarity=0.392  Sum_probs=71.0

Q ss_pred             CCCCCCcccCccchhhccCCeecCCC-chhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669          251 VLIIPADFLCPISLELMRDPVIVATG-QTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE  327 (636)
Q Consensus       251 ~~~~p~~f~CPis~~~m~dPv~~~~G-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~  327 (636)
                      ...+|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++....++||+.+++.|+.|+..++..
T Consensus        16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   92 (98)
T 1wgm_A           16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence            34679999999999999999999999 99999999999985 679999999999999999999999999999998754

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.79  E-value=4.9e-20  Score=174.07  Aligned_cols=76  Identities=29%  Similarity=0.415  Sum_probs=71.4

Q ss_pred             CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669          252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE  327 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~  327 (636)
                      ..+|++|+||||+++|+|||+++|||||||.||++|+..++.+||+|++++...+++||+.++++|+.|+..||+.
T Consensus       101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~  176 (179)
T 2f42_A          101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV  176 (179)
T ss_dssp             CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred             cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence            4679999999999999999999999999999999999875568999999999999999999999999999999864

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.79  E-value=1.1e-17  Score=172.75  Aligned_cols=235  Identities=17%  Similarity=0.176  Sum_probs=190.1

Q ss_pred             HHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhcCCChHHHHHHHHHH
Q 006669          352 VAIEALVRKLSSR------------SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN-LLTTDDVMTQEHAVTAI  418 (636)
Q Consensus       352 ~~i~~Lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~-lL~s~d~~~~e~Av~aL  418 (636)
                      ..++..++.|.++            +.+.+..|+..|..+.. +.+|...+...|++|.|+. +|.++++.+++.|+++|
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L  106 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI  106 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            3466677777664            23578889999999996 6678888999999999999 99999999999999999


Q ss_pred             HHhhh-CcchHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccCCHHHHHH
Q 006669          419 LNLSI-YENNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKD  495 (636)
Q Consensus       419 ~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~  495 (636)
                      .|++. ++..+..+++.|++++|+.+|+++ +..++.+|+++|.+++.... ....+...|+++.|+.+|++++..+++.
T Consensus       107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~  186 (296)
T 1xqr_A          107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK  186 (296)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence            99998 567888999999999999999975 78999999999999987654 4566777899999999999999999999


Q ss_pred             HHHHHHhhhhc-cchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHhc-CcHHHH----HHHHc
Q 006669          496 AATALFNLCIY-MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP-EAKIAIVKA-STIPVL----IVLLR  568 (636)
Q Consensus       496 A~~aL~nL~~~-~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~~~~~i~~~-g~i~~L----v~lL~  568 (636)
                      |+++|.+|+.. ++.+..+++.|+++.|+.+|.+.+..+++.|+.+|.+|+... ......... ..+..+    .+-++
T Consensus       187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq  266 (296)
T 1xqr_A          187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ  266 (296)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHcc
Confidence            99999999876 467889999999999999999999999999999999999863 333333221 122222    22333


Q ss_pred             C-C-CHHHHHHHHHHHHHhhc
Q 006669          569 T-G-LPRNKENAAAILLSLCK  587 (636)
Q Consensus       569 ~-~-s~~~ke~A~~~L~~L~~  587 (636)
                      . . +....+.|..++-.+..
T Consensus       267 ~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          267 QHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHHHHHHHHcC
Confidence            2 2 35666777777765553

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.72  E-value=5.5e-18  Score=139.38  Aligned_cols=75  Identities=65%  Similarity=1.150  Sum_probs=71.2

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE  327 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~  327 (636)
                      .+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++....+.||+.++++|+.|.++|+++
T Consensus         4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~   78 (78)
T 1t1h_A            4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence            579999999999999999999999999999999999877899999999999999999999999999999999863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.71  E-value=2.3e-17  Score=169.12  Aligned_cols=77  Identities=29%  Similarity=0.415  Sum_probs=72.3

Q ss_pred             CCCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669          251 VLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE  327 (636)
Q Consensus       251 ~~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~  327 (636)
                      ...+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+++++...++||..++++|++|+..||+.
T Consensus       202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~  278 (281)
T 2c2l_A          202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV  278 (281)
T ss_dssp             CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence            45789999999999999999999999999999999999877777999999999999999999999999999999864

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=1.5e-17  Score=141.72  Aligned_cols=73  Identities=29%  Similarity=0.459  Sum_probs=64.8

Q ss_pred             CCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcCC-----CCCCCCCCcc---cccCCcccchhHHHHHHHHHhh
Q 006669          253 IIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDCG-----NVTCPKTQQK---LEHLTLTPNYVLRSLISQWCTM  323 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~-----~~~cP~~~~~---l~~~~l~pn~~lr~lI~~w~~~  323 (636)
                      ..+++|.||||+++|+|||+++ |||+|||.||++||..+     ..+||+|+.+   +...++.||..++++|+.|+..
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            3578999999999999999996 99999999999999753     4689995554   8889999999999999999987


Q ss_pred             cc
Q 006669          324 HN  325 (636)
Q Consensus       324 n~  325 (636)
                      ++
T Consensus        83 ~~   84 (94)
T 2yu4_A           83 RH   84 (94)
T ss_dssp             CC
T ss_pred             hc
Confidence            65

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.55  E-value=1.8e-15  Score=173.27  Aligned_cols=75  Identities=28%  Similarity=0.376  Sum_probs=70.2

Q ss_pred             CCCCCCcccCccchhhccCCeecCCC-chhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhccc
Q 006669          251 VLIIPADFLCPISLELMRDPVIVATG-QTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNI  326 (636)
Q Consensus       251 ~~~~p~~f~CPis~~~m~dPv~~~~G-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~  326 (636)
                      ...+|++|+||||+++|+|||++|+| +||||++|++|+.. +.+||.|++++++..++||+++|+.|++||..++.
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            35789999999999999999999998 79999999999986 67999999999999999999999999999998763

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.54  E-value=8.8e-16  Score=119.38  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=50.3

Q ss_pred             cccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchh
Q 006669          257 DFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV  312 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~  312 (636)
                      .|.||||+++|+|||+. ++||+|||.+|++|+.. +.+||+|++++...+++||+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence            58999999999999999 99999999999999985 457999999999999999864

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.52  E-value=7.8e-13  Score=146.59  Aligned_cols=277  Identities=19%  Similarity=0.211  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CChHHHHHHHHHHHHhhh-Ccc
Q 006669          351 VVAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTT--DDVMTQEHAVTAILNLSI-YEN  426 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s--~d~~~~e~Av~aL~nLs~-~~~  426 (636)
                      ..+|+.|+..+.+. -.+.|+.|+..|+.+++.   ++..+. .++++.|+..|+.  .|.++...++.+|.++.. +++
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            45799999999765 478899999999999974   444444 5679999999986  578888899999988765 221


Q ss_pred             -----------------hHHHH-HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--hhHHHHhc-CchHHHHhhh
Q 006669          427 -----------------NKGLI-MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--NKIIIGAS-GAIPALVDLL  485 (636)
Q Consensus       427 -----------------~k~~I-~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~-g~i~~Lv~LL  485 (636)
                                       +...+ .+.+.|+.|+.+|.+.+..+|.+++.+|..|+....  +...|... ++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             11222 347889999999999999999999999999987654  56677766 9999999999


Q ss_pred             ccCCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCC----CHHHHHHHHHHHHHHhc-ChhhHHHHHhcCc
Q 006669          486 QNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDS----RNCMVDEALTILSVLAS-NPEAKIAIVKAST  559 (636)
Q Consensus       486 ~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~  559 (636)
                      .+.....+-.++..|.+|+..+.+.++++. .|+++.|+.++..+    ...+++.++.+|.||.. ++.++..+.+.|+
T Consensus       176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~  255 (651)
T 3grl_A          176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY  255 (651)
T ss_dssp             GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence            999999999999999999999988888887 69999999999763    34688999999999998 5669999999999


Q ss_pred             HHHHHHHHcCCCH------HHHHH---HHHHHHHhhcc------ChHHHHHHHHcCChHHHHHhhhcC--CHHHHHHHHH
Q 006669          560 IPVLIVLLRTGLP------RNKEN---AAAILLSLCKR------DTENLACISRLGAVIPLTELTKSG--TERAKRKATS  622 (636)
Q Consensus       560 i~~Lv~lL~~~s~------~~ke~---A~~~L~~L~~~------~~~~~~~i~~~G~i~~L~~Ll~~g--~~~~k~kA~~  622 (636)
                      ++.|..++..+.+      ..-.+   +..++..|+..      .+.+...+.+.|++..|+.++...  ...++..|..
T Consensus       256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~  335 (651)
T 3grl_A          256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN  335 (651)
T ss_dssp             GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence            9999999975421      11223   66677777765      235677889999999999998764  5677888888


Q ss_pred             HHHHhhccc
Q 006669          623 LLEHLRKLP  631 (636)
Q Consensus       623 lL~~l~~~~  631 (636)
                      ++..+.+-+
T Consensus       336 tla~~irgN  344 (651)
T 3grl_A          336 TVSEVIRGC  344 (651)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhCC
Confidence            888776543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.46  E-value=5.9e-14  Score=118.97  Aligned_cols=75  Identities=25%  Similarity=0.411  Sum_probs=67.2

Q ss_pred             CCCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcC-CCCCCCCCCccc-ccCCcccchhHHHHHHHHHhhccc
Q 006669          252 LIIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDC-GNVTCPKTQQKL-EHLTLTPNYVLRSLISQWCTMHNI  326 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~-~~~~cP~~~~~l-~~~~l~pn~~lr~lI~~w~~~n~~  326 (636)
                      ..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +..+||.|++++ ....+.+|..++++|+.|...++.
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~   85 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY   85 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence            35789999999999999999999 9999999999999964 457899999997 567899999999999999987754

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.37  E-value=6.8e-11  Score=131.16  Aligned_cols=278  Identities=14%  Similarity=0.133  Sum_probs=216.0

Q ss_pred             HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhccChh-----------------hH-HHHHhcCCHHHHHHhhcCCChHH
Q 006669          351 VVAIEALVRKLSS--RSVEERRAAVAEIRSLSKRSTD-----------------NR-IIIADAGAIPVLVNLLTTDDVMT  410 (636)
Q Consensus       351 ~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~-----------------~r-~~i~e~g~i~~Lv~lL~s~d~~~  410 (636)
                      ..+++.|+..|+.  .+.+....++..|.++...+++                 +. ..+.+.+.|+.|+.+|.+.+..+
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~v  138 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHV  138 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHH
Confidence            4468899999975  4777888888988776543322                 11 23345688999999999999999


Q ss_pred             HHHHHHHHHHhhh-Ccc-hHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-CchHHHHhhhc
Q 006669          411 QEHAVTAILNLSI-YEN-NKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS-GAIPALVDLLQ  486 (636)
Q Consensus       411 ~e~Av~aL~nLs~-~~~-~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~LL~  486 (636)
                      +..++.+|..|+. .++ +++.|.. .++|+.|+.+|.+....+|..|+..|.+|+..+.+..+++.. |+++.|+.+++
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            9999999999998 444 7888885 699999999999989999999999999999988776666655 99999999998


Q ss_pred             cCC----HHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCH------HHHHH---HHHHHHHHhcC-----
Q 006669          487 NGS----TRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRN------CMVDE---ALTILSVLASN-----  547 (636)
Q Consensus       487 ~~~----~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~------~~~~~---Al~~L~~La~~-----  547 (636)
                      ...    ..+..+++.+|.||..++ .|+..+.+.|.++.|..+|..+++      ....+   ++.++..|+..     
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            643    367889999999998876 588899999999999999964321      12233   66677777663     


Q ss_pred             --hhhHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhccChHHHHHHHHcC-----ChHH----HHHhhhcC-C
Q 006669          548 --PEAKIAIVKASTIPVLIVLLRTG--LPRNKENAAAILLSLCKRDTENLACISRLG-----AVIP----LTELTKSG-T  613 (636)
Q Consensus       548 --~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G-----~i~~----L~~Ll~~g-~  613 (636)
                        +.++.++.+.|+++.|++++...  +..++..|+.++..++++++.....+.+..     ..+.    |+.++.+. .
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence              24678899999999999999864  578999999999999999998888876543     2233    33444443 4


Q ss_pred             HHHHHHHHHHHHHhh
Q 006669          614 ERAKRKATSLLEHLR  628 (636)
Q Consensus       614 ~~~k~kA~~lL~~l~  628 (636)
                      ...|-.|...++..-
T Consensus       379 ~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          379 FVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            677777777777553

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.34  E-value=3.4e-13  Score=120.94  Aligned_cols=70  Identities=17%  Similarity=0.326  Sum_probs=63.9

Q ss_pred             CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc-CCcccchhHHHHHHHHHhh
Q 006669          254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH-LTLTPNYVLRSLISQWCTM  323 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~pn~~lr~lI~~w~~~  323 (636)
                      +++++.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++.. ..+.+|..++++++.|...
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            467899999999999999999999999999999998767799999999987 7899999999999998743

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.34  E-value=3.1e-13  Score=133.38  Aligned_cols=71  Identities=15%  Similarity=0.260  Sum_probs=64.2

Q ss_pred             CCCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCC-CCCCCC--CCcccccCCcccchhHHHHHHHHHhh
Q 006669          253 IIPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCG-NVTCPK--TQQKLEHLTLTPNYVLRSLISQWCTM  323 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~-~~~cP~--~~~~l~~~~l~pn~~lr~lI~~w~~~  323 (636)
                      ....+|.||||+++|+|||+. .|||+|||.||.+||..+ ..+||+  |++.+...++.||..++++|+.|..+
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            457899999999999999985 999999999999999863 468999  88999999999999999999999764

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.29  E-value=1e-12  Score=121.67  Aligned_cols=69  Identities=22%  Similarity=0.445  Sum_probs=63.7

Q ss_pred             CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccC-CcccchhHHHHHHHHHh
Q 006669          254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL-TLTPNYVLRSLISQWCT  322 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~-~l~pn~~lr~lI~~w~~  322 (636)
                      ++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++... .+.+|..+++++..|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            4678999999999999999999999999999999997777999999999877 89999999999998874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.25  E-value=3.3e-10  Score=110.18  Aligned_cols=190  Identities=21%  Similarity=0.207  Sum_probs=159.9

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      +...++.|++.|+++++.++..|+..|..+..           ..+++.|+.+|.++++.++..|+.+|.++..      
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            44579999999999999999999999887753           3578999999999999999999999987752      


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN  509 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n  509 (636)
                          .++++.|+..|++.++.++..|+.+|..+..          ...++.|+.++.+.++.++..|+.+|.++..    
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence                4578999999999999999999999998743          3578999999999999999999999999842    


Q ss_pred             HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Q 006669          510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRD  589 (636)
Q Consensus       510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~  589 (636)
                            ..+++.|.+++.+.++.++..|+.+|..+..          ..+++.|..++.+.++.++..|..+|..+..++
T Consensus       142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                  3588999999999999999999999998853          346788889999899999999999999887654


Q ss_pred             h
Q 006669          590 T  590 (636)
Q Consensus       590 ~  590 (636)
                      +
T Consensus       206 ~  206 (211)
T 3ltm_A          206 H  206 (211)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.24  E-value=3.8e-10  Score=114.72  Aligned_cols=224  Identities=12%  Similarity=0.054  Sum_probs=160.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .++.|++.|.++++.++..|+..|..+..           .++++.|+.+|.++++.++..|+.+|.++...+.....  
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~--   90 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN--   90 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH--
Confidence            58899999999999999999999988762           23578899999999999999999999888643322111  


Q ss_pred             HhCChHHHH-HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669          433 LAGAIPSIV-QILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG  511 (636)
Q Consensus       433 ~~G~I~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~  511 (636)
                         .++.+. .++++.++.++..++.+|.++...+..    ....+++.|+.++.+.++.++..|+.+|.++..      
T Consensus        91 ---l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------  157 (280)
T 1oyz_A           91 ---VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND------  157 (280)
T ss_dssp             ---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred             ---HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------
Confidence               223333 235667889999999999988532210    112467888888888888999999999888743      


Q ss_pred             HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669          512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE  591 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~  591 (636)
                          .++++.|+.++.+++..++..|+.+|..+....        ..+++.|+.++.+.++.++..|+.+|..+..    
T Consensus       158 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----  221 (280)
T 1oyz_A          158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----  221 (280)
T ss_dssp             -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----
Confidence                247888899888888888888888888874321        1356778888887788888888888887762    


Q ss_pred             HHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          592 NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       592 ~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                             ..+++.|..++.+.+  ++..|..+|..+
T Consensus       222 -------~~~~~~L~~~l~d~~--vr~~a~~aL~~i  248 (280)
T 1oyz_A          222 -------KRVLSVLCDELKKNT--VYDDIIEAAGEL  248 (280)
T ss_dssp             -------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred             -------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence                   234555555554432  455555555544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.22  E-value=8.8e-10  Score=106.25  Aligned_cols=187  Identities=21%  Similarity=0.211  Sum_probs=160.5

Q ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669          349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      ......+.+++.|.++++.++..|+..|..+..           .++++.|+.+|.++++.++..|+.+|..+..     
T Consensus        11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----   74 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   74 (201)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            345678999999999999999999999987753           2568999999999999999999999987642     


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~  508 (636)
                           ..+++.|+..|.+.++.++..|+.+|..+..          ..+++.|+.++.+.++.++..|+.+|.++..   
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                 3578999999999999999999999998742          3578999999999999999999999998842   


Q ss_pred             hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                             ..+++.|..++.+.+..++..|+.+|..+..          ..+++.|..++.+.++.++..|..+|..+-
T Consensus       137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   4689999999999999999999999998832          236788889998889999999999998764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.21  E-value=5.5e-10  Score=108.54  Aligned_cols=188  Identities=20%  Similarity=0.203  Sum_probs=159.5

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669          393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII  472 (636)
Q Consensus       393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i  472 (636)
                      .+.++.|+..|.++++.++..|+..|..+..          .++++.|+..|.++++.++..|+.+|..+..        
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            4578999999999999999999999987643          4678999999999999999999999988742        


Q ss_pred             HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Q 006669          473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKI  552 (636)
Q Consensus       473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~  552 (636)
                        .++++.|+.+|.+.++.++..|+.+|.++..          .++++.|++++.+++..++..|+.+|..+..      
T Consensus        80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------  141 (211)
T 3ltm_A           80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------  141 (211)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence              3678999999999999999999999998743          3588999999999999999999999998853      


Q ss_pred             HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          553 AIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       553 ~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                          ...++.|..++.+.++.++..|+.+|..+..           ..+++.|..++.++++.+|..|..+|..+....
T Consensus       142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                3578999999988899999999999998853           235778889999999999999999999887644

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.20  E-value=8.2e-12  Score=107.19  Aligned_cols=70  Identities=19%  Similarity=0.353  Sum_probs=63.9

Q ss_pred             CCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669          254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH  324 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n  324 (636)
                      +++++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|+.++...++.+|+.++++++.|....
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            46789999999999999998 99999999999999984 579999999999889999999999999998654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.17  E-value=5.2e-12  Score=111.58  Aligned_cols=70  Identities=17%  Similarity=0.338  Sum_probs=61.6

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc-------CCcccchhHHHHHHHHHh
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH-------LTLTPNYVLRSLISQWCT  322 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~-------~~l~pn~~lr~lI~~w~~  322 (636)
                      ...++|.||||++.+.+||+++|||+||+.||.+|+..+..+||.|++.+..       ..+..|..+..+|++|..
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p   87 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP   87 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence            3457899999999999999999999999999999998778899999998864       556678889999988863

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.16  E-value=1.3e-11  Score=107.73  Aligned_cols=69  Identities=10%  Similarity=0.337  Sum_probs=61.2

Q ss_pred             CCCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccC----CcccchhHHHHHHHHHh
Q 006669          253 IIPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL----TLTPNYVLRSLISQWCT  322 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~----~l~pn~~lr~lI~~w~~  322 (636)
                      .+++++.||||++.|.|||++ +|||+||+.||.+|+.. +.+||.|+..+...    .+.+|..+.++++.|..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            347789999999999999998 99999999999999985 48899999998765    67899999999988753

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.16  E-value=1.2e-11  Score=106.44  Aligned_cols=70  Identities=24%  Similarity=0.358  Sum_probs=62.4

Q ss_pred             CCCcccCccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhh
Q 006669          254 IPADFLCPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTM  323 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~  323 (636)
                      +.+++.||||++.|.|||+ ++|||+||+.||.+|+.....+||.|+.++....+.+|..+..++++.-..
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l   89 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL   89 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence            4678999999999999999 999999999999999987667999999999999999998888877766543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.16  E-value=2e-09  Score=103.66  Aligned_cols=185  Identities=20%  Similarity=0.204  Sum_probs=159.0

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH
Q 006669          394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG  473 (636)
Q Consensus       394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~  473 (636)
                      +..+.++.+|.++++.++..|+.+|..+..          .++++.|+..|.++++.++..|+.+|..+..         
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence            457889999999999999999999987653          3578999999999999999999999987742         


Q ss_pred             hcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Q 006669          474 ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIA  553 (636)
Q Consensus       474 ~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~  553 (636)
                       ..+++.|+.+|.+.++.++..|+.+|.++..          ..+++.|+.++.+.++.++..|+.+|..+..       
T Consensus        75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------  136 (201)
T 3ltj_A           75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------  136 (201)
T ss_dssp             -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence             3578999999999999999999999998743          3588999999999999999999999998853       


Q ss_pred             HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          554 IVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       554 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                         ...++.|+.++.+.++.++..|+.+|..+..           ..+++.|..++.++++.++..|..+|..+..
T Consensus       137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence               3578999999998899999999999998842           2267788889999999999999999998764

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.15  E-value=2.2e-12  Score=105.85  Aligned_cols=64  Identities=23%  Similarity=0.416  Sum_probs=56.5

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCC------CCCCCCCCcccccCCcccchhHHHH
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG------NVTCPKTQQKLEHLTLTPNYVLRSL  316 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~------~~~cP~~~~~l~~~~l~pn~~lr~l  316 (636)
                      .+.+++.||||++.+.||++++|||+||+.||.+|+...      ..+||.|++++...++.+|+.++++
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l   77 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI   77 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence            467889999999999999999999999999999999753      6789999999988888888776543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.13  E-value=9.6e-12  Score=103.29  Aligned_cols=64  Identities=27%  Similarity=0.545  Sum_probs=56.6

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC-----CCCCCCCCCcccccCCcccchhHHHH
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC-----GNVTCPKTQQKLEHLTLTPNYVLRSL  316 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-----~~~~cP~~~~~l~~~~l~pn~~lr~l  316 (636)
                      .+.+++.||||++.+.+|++++|||+||+.||.+|+..     +...||.|++++....+.+|+.++++
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI   83 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence            46788999999999999999999999999999999976     26789999999998888888776543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.12  E-value=2.1e-11  Score=114.82  Aligned_cols=69  Identities=23%  Similarity=0.515  Sum_probs=61.6

Q ss_pred             CCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccc-cCCcccchhHHHHHHHHHh
Q 006669          254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLE-HLTLTPNYVLRSLISQWCT  322 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~-~~~l~pn~~lr~lI~~w~~  322 (636)
                      +.+++.||||++.|.|||++ +|||+||+.||.+|+..++.+||.|+.++. ...+.+|..+.++|..|..
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            45678999999999999997 999999999999999977889999999984 4568899999999998854

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.11  E-value=2e-11  Score=108.11  Aligned_cols=68  Identities=18%  Similarity=0.295  Sum_probs=62.4

Q ss_pred             CCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhc
Q 006669          254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMH  324 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n  324 (636)
                      +.+++.||||+++|.|||++ +|||+||+.||.+|+.   ..||.|+.++...++.+|+.+++++..+....
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            46789999999999999999 9999999999999997   78999999998889999999999999887653

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.11  E-value=2.2e-11  Score=108.01  Aligned_cols=68  Identities=22%  Similarity=0.393  Sum_probs=62.0

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHH
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQW  320 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w  320 (636)
                      .++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.++..+++.|.++
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            56789999999999999999999999999999999987666999999999988888998888888765

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.10  E-value=7.7e-09  Score=105.00  Aligned_cols=201  Identities=15%  Similarity=0.071  Sum_probs=159.3

Q ss_pred             HhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH
Q 006669          391 ADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI  470 (636)
Q Consensus       391 ~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~  470 (636)
                      ...+.++.|+..|.++++.++..|+.+|.++..          .++++.|+.+|+++++.++..|+.+|..+...+....
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~   89 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   89 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence            345789999999999999999999999988762          3468899999999999999999999999864432211


Q ss_pred             HHHhcCchHHHHh-hhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669          471 IIGASGAIPALVD-LLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE  549 (636)
Q Consensus       471 ~i~~~g~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~  549 (636)
                           ..++.|.. ++.+.++.++..++.+|.++....+.    ....+++.|+.++.++++.++..|+.+|.++..   
T Consensus        90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---  157 (280)
T 1oyz_A           90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---  157 (280)
T ss_dssp             -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred             -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence                 12233332 35677899999999999998743321    123578999999999999999999999987653   


Q ss_pred             hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          550 AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       550 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                             ..+++.|+.++.+.++.++..|+.+|..+...++         .+++.|..++.+.++.+|..|..+|..+..
T Consensus       158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~  221 (280)
T 1oyz_A          158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD  221 (280)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence                   3589999999999999999999999998864433         256788889999999999999999998864

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.6e-11  Score=101.90  Aligned_cols=64  Identities=20%  Similarity=0.489  Sum_probs=56.7

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC-----CCCCCCCCCcccccCCcccchhHHHH
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC-----GNVTCPKTQQKLEHLTLTPNYVLRSL  316 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~-----~~~~cP~~~~~l~~~~l~pn~~lr~l  316 (636)
                      .+.+++.||||++.+.+|++++|||+||+.||.+|+..     +...||.|++.+...++.+|+.++++
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI   83 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred             HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence            56788999999999999999999999999999999975     36789999999998888888776543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=7.5e-11  Score=93.15  Aligned_cols=54  Identities=11%  Similarity=0.276  Sum_probs=48.7

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT  306 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~  306 (636)
                      .+++++.||||++.++|||+++|||+|++.||.+|+..+..+||.|++++...+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            457889999999999999999999999999999999766788999999886644

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.07  E-value=8.1e-11  Score=95.27  Aligned_cols=52  Identities=29%  Similarity=0.503  Sum_probs=46.1

Q ss_pred             CCCCCcccCccchhhccCCeecC-CCchhhhHHHHHHHcCC-CCCCCCCCcccc
Q 006669          252 LIIPADFLCPISLELMRDPVIVA-TGQTYERSYIQRWIDCG-NVTCPKTQQKLE  303 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~-~G~t~~r~~I~~w~~~~-~~~cP~~~~~l~  303 (636)
                      ..+++++.||||++.|.|||+++ |||+||+.||.+|+... ..+||.|++++.
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            35688999999999999999999 99999999999999753 468999999754

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.06  E-value=5.9e-11  Score=108.30  Aligned_cols=64  Identities=19%  Similarity=0.435  Sum_probs=52.4

Q ss_pred             CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHH
Q 006669          255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWC  321 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~  321 (636)
                      .+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|++++....  +|..+...|..+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHHH
Confidence            467899999999999999999999999999999974 678999999886532  3555555666554

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=7.3e-11  Score=97.29  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhH
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL  313 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~l  313 (636)
                      ...+++.||||++.|.|||+++|||+||+.||.+|+.. ..+||.|++++. ..+.+|..+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l   69 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKEL   69 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHH
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHH
Confidence            34678999999999999999999999999999999974 678999999986 566677544

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.04  E-value=7.3e-11  Score=103.49  Aligned_cols=68  Identities=18%  Similarity=0.402  Sum_probs=59.4

Q ss_pred             CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCC--CCCCCCCCcccccCCcccchhHHHHHHHHHh
Q 006669          255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG--NVTCPKTQQKLEHLTLTPNYVLRSLISQWCT  322 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  322 (636)
                      .+++.||||++.+.||++++|||+||+.||.+|+..+  ..+||.|+.++....+.+|..+.++++.+..
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            5678899999999999999999999999999999853  3589999999999899999877777776654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.04  E-value=1.2e-09  Score=128.60  Aligned_cols=271  Identities=16%  Similarity=0.096  Sum_probs=194.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD--AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK  428 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e--~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k  428 (636)
                      ..++.+++.+++.+.++|..|+..|..+....+.   .+..  ...++.|+.++.++++.++..|+.+|.+++.. +..-
T Consensus       174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~  250 (852)
T 4fdd_A          174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL  250 (852)
T ss_dssp             HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            4678888888889999999999999887754332   1111  24678888888888999999999999999873 2211


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhh-----------cc--------
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLL-----------QN--------  487 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL-----------~~--------  487 (636)
                      ...+ .+.++.++.++.+.+.+++..|+.++..++.....+..+...  ..++.++..+           .+        
T Consensus       251 ~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          251 LPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence            1111 246777888888888999999999999998655433332221  4566666666           22        


Q ss_pred             ---CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHH
Q 006669          488 ---GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLI  564 (636)
Q Consensus       488 ---~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv  564 (636)
                         .+...++.|+.+|..|+...+.  .++ ..+++.+.+++.+.+...++.|+.+|.+++........-.-..+++.++
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~  406 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI  406 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence               1234588888999888764432  122 3477888888888899999999999999998654321111235788899


Q ss_pred             HHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          565 VLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       565 ~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ..+.+.++.+|..|+++|.+++...+.......-.++++.|+..+.+.+++++..|.++|..+.+
T Consensus       407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            99988899999999999999886422211111122467888888888999999999999998864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.7e-10  Score=92.87  Aligned_cols=55  Identities=20%  Similarity=0.514  Sum_probs=48.4

Q ss_pred             CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC--CCCCCCCCCcccccCC
Q 006669          252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC--GNVTCPKTQQKLEHLT  306 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~--~~~~cP~~~~~l~~~~  306 (636)
                      ..+.+++.||||++.+.||++++|||+||+.||.+|+..  +..+||.|++++...+
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            356789999999999999999999999999999999973  5678999999886544

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.9e-10  Score=91.43  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=50.8

Q ss_pred             CCCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          253 IIPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      .+.+++.||||++.|.|||++ +|||+||+.||.+|+.. ..+||.|++++...++.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            457889999999999999997 99999999999999975 6789999999987777655

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.00  E-value=9.2e-11  Score=103.68  Aligned_cols=67  Identities=16%  Similarity=0.254  Sum_probs=55.6

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc-chhHHHHHHH
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP-NYVLRSLISQ  319 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~  319 (636)
                      .++++|.||||++.|.|||+++|||+||+.||.+|+..++.+||.|+.++...++.+ +..+.+++.+
T Consensus        19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~   86 (116)
T 1rmd_A           19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS   86 (116)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred             hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence            345689999999999999999999999999999999876789999999998777654 4445555543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.99  E-value=3e-10  Score=89.34  Aligned_cols=55  Identities=22%  Similarity=0.356  Sum_probs=49.5

Q ss_pred             CcccCccchh-hccCC----eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          256 ADFLCPISLE-LMRDP----VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       256 ~~f~CPis~~-~m~dP----v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      +++.||||++ .+.+|    ++++|||+|++.||.+|+..+..+||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            5789999999 99999    5789999999999999998777889999999988777765

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.98  E-value=3.8e-09  Score=124.39  Aligned_cols=272  Identities=14%  Similarity=0.109  Sum_probs=195.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHH--HH--hcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRII--IA--DAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~--i~--e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      .++.|++.+.+++...+..|+..|..+++..+..-..  +.  -...++.|+.++.+.++.++..|+.+|.++.......
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~  208 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA  208 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence            6899999999999999999999999998754332110  00  1235777888888889999999999998877532221


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh--cCchHHHHhhhccCCHHHHHHHHHHHHhhhhc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA--SGAIPALVDLLQNGSTRGRKDAATALFNLCIY  506 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~  506 (636)
                      ..-.-.+.++.+...+.+++++++..|+.+|..++.....  .+..  .+.++.++.++++.++.++..|+..+.+++..
T Consensus       209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~  286 (852)
T 4fdd_A          209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ  286 (852)
T ss_dssp             HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence            1000135678888888888999999999999999764322  1211  15777888888888899999999999998865


Q ss_pred             cchHHHHH--HhchHHHHHHHh-----------cC-----------CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHH
Q 006669          507 MGNKGRAV--RAGIISALLKML-----------TD-----------SRNCMVDEALTILSVLASNPEAKIAIVKASTIPV  562 (636)
Q Consensus       507 ~~n~~~lv--~~g~v~~Lv~lL-----------~~-----------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~  562 (636)
                      ...+..+-  -...+|.++..+           .+           .+..++..|..+|..++.....  .+.. ..++.
T Consensus       287 ~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~  363 (852)
T 4fdd_A          287 PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPL  363 (852)
T ss_dssp             TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHH
Confidence            43333221  135678888877           22           1223567788888888764321  1211 35677


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          563 LIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       563 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      +..++.+.++..|+.|+.+|.+++.+.++.... .-.++++.|..++.+.++.+|..|.++|..+..+
T Consensus       364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            778888888999999999999999876653332 2245788999999999999999999999988764

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=3.3e-10  Score=88.52  Aligned_cols=46  Identities=24%  Similarity=0.621  Sum_probs=41.6

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC--CCCCCCCC
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC--GNVTCPKT  298 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~--~~~~cP~~  298 (636)
                      .+.+++.||||++.+.|||+++|||+|++.||.+|+..  +..+||.|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            56789999999999999999999999999999999974  45689986

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.95  E-value=2.4e-10  Score=108.02  Aligned_cols=68  Identities=22%  Similarity=0.393  Sum_probs=61.5

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHH
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQW  320 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w  320 (636)
                      .++++|.||||+++|.|||.++|||+||+.||.+|+..+..+||.|+.++....+.++..+++.|.++
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            56889999999999999999999999999999999987667999999999988888998888777653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.92  E-value=1.6e-10  Score=105.70  Aligned_cols=66  Identities=17%  Similarity=0.338  Sum_probs=54.3

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccc---------cCCcccchhHHHHHH
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE---------HLTLTPNYVLRSLIS  318 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~---------~~~l~pn~~lr~lI~  318 (636)
                      .++++|.||||+++|.|||.++|||+||+.||.+|+..+..+||.|+.++.         ...+.|+..+++.|.
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~  101 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE  101 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence            467899999999999999999999999999999999877779999998643         223446666666554

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.89  E-value=5.6e-08  Score=108.46  Aligned_cols=266  Identities=14%  Similarity=0.134  Sum_probs=189.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      .++.+++.++..+++++..|+..|..++..... .+....-...+|.+..++.+.++.++..++.+|..++..-...  .
T Consensus       282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~  359 (588)
T 1b3u_A          282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--N  359 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--H
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--H
Confidence            578888899999999999999999988764321 1211222356788889999889999999999999887521111  1


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG  511 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~  511 (636)
                      .....++.+..++++.+++++..++.+|..+...-...  ......+|.|..++.+.+++++..++.+|..++..-+.. 
T Consensus       360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-  436 (588)
T 1b3u_A          360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE-  436 (588)
T ss_dssp             HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG-
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH-
Confidence            22347788889998888999999988887765322111  112356788888888888999999999998886432211 


Q ss_pred             HHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChH
Q 006669          512 RAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTE  591 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~  591 (636)
                       .....+++.++..+.+.+..+++.|+.+|..++......  ......+|.|+.++.+.+...|..++.++..++..-+.
T Consensus       437 -~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~  513 (588)
T 1b3u_A          437 -FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ  513 (588)
T ss_dssp             -GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH
Confidence             122347788888898888899999999999887643221  11235677887777777788888888888887753221


Q ss_pred             HHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          592 NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       592 ~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                         ......+++.|..++.+.++.+|..+.++|..+.+
T Consensus       514 ---~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          514 ---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             ---HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             ---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence               11234577888888888888888888888887765

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.88  E-value=3e-08  Score=110.73  Aligned_cols=263  Identities=15%  Similarity=0.074  Sum_probs=195.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .++.+...+++.++.++..++..|..++..-..  .. .....+|.+..+++.+++.++..++.+|..+...-... . .
T Consensus       325 l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~-~  399 (588)
T 1b3u_A          325 ILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q-L  399 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H-H
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-H-H
Confidence            567778888899999999999988888753211  11 12347888999999888999999999888876522111 1 1


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR  512 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~  512 (636)
                      ....++.+..++++.++.++..++.+|..++..-...  ......++.+..++.+.+..++..|+.+|..++..-+..  
T Consensus       400 ~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--  475 (588)
T 1b3u_A          400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--  475 (588)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--
Confidence            2346788888888889999999999999886321100  111246788888999989999999999999987654332  


Q ss_pred             HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHH
Q 006669          513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTEN  592 (636)
Q Consensus       513 lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~  592 (636)
                      .....++|.|..++.+.+..++..++.++..++..-..  .......+|.|+..+....+.+|..++.+|..++..-+..
T Consensus       476 ~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  553 (588)
T 1b3u_A          476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS  553 (588)
T ss_dssp             HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred             hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh
Confidence            22356888899888888899999999999998874221  1223467899999998888999999999999998654332


Q ss_pred             HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          593 LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       593 ~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                         .....+++.|..+..+.+..+|..|..+|..+.+
T Consensus       554 ---~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          554 ---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             ---HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             ---hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence               2224467778888888999999999999988764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.85  E-value=9.1e-10  Score=88.05  Aligned_cols=58  Identities=21%  Similarity=0.433  Sum_probs=51.4

Q ss_pred             CCCCcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccch
Q 006669          253 IIPADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY  311 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~  311 (636)
                      ...+++.||||++.+.+|       ++++|||+|++.||.+|+.. +.+||.|+.++....+.+++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence            446789999999999999       89999999999999999975 47999999999888887764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.83  E-value=2.4e-08  Score=114.85  Aligned_cols=195  Identities=15%  Similarity=0.125  Sum_probs=153.9

Q ss_pred             hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHH-hhhccCCHHHHHHHHHHHHhhhhcc--chH
Q 006669          434 AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALV-DLLQNGSTRGRKDAATALFNLCIYM--GNK  510 (636)
Q Consensus       434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv-~LL~~~~~~~k~~A~~aL~nL~~~~--~n~  510 (636)
                      ...|.+++..|++++++.|..|+.+|.+|+.+.+.+..+...+++..++ .+|.+.+..++..|+++|.||+...  +.+
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3456778888999999999999999999998888888888888888764 5788889999999999999999764  567


Q ss_pred             HHHHHhchHHHHHHHhcCCC---------------------HHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHc
Q 006669          511 GRAVRAGIISALLKMLTDSR---------------------NCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLR  568 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~~---------------------~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~  568 (636)
                      ..+++.|++++|..++....                     ..+.+.++.+|++||. +.+....+...++++.|+..|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            88999999999999885310                     1245678899999997 4556778888899999998885


Q ss_pred             C---CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHh--hhcCCHHHHHHHHHHHHHhh
Q 006669          569 T---GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL--TKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       569 ~---~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~L--l~~g~~~~k~kA~~lL~~l~  628 (636)
                      .   .+..++..|+.+|..++..++.....+...|....+..+  +..+++..+.-+..+|.++.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            3   246889999999999999999888888877654322222  23444455677888888764

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2.5e-09  Score=81.81  Aligned_cols=46  Identities=26%  Similarity=0.720  Sum_probs=41.3

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcC--CCCCCCCC
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC--GNVTCPKT  298 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~--~~~~cP~~  298 (636)
                      .+.+++.||||++.+.+|++++|||+|++.||.+|+..  +..+||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            45678999999999999999999999999999999865  56789986

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.79  E-value=2.5e-08  Score=107.86  Aligned_cols=272  Identities=13%  Similarity=0.101  Sum_probs=185.9

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhC-cc
Q 006669          353 AIEALVRKLSSR--SVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIY-EN  426 (636)
Q Consensus       353 ~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~-~~  426 (636)
                      .++.|++.+.++  ++..+..|+..|..+++.. ++.-.... ...++.++.+|.+.  ++.++..|+.++.++... ..
T Consensus       129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            689999999988  8999999999999998643 21100001 13577888888877  689999999999986542 11


Q ss_pred             hH-HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh--HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          427 NK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK--IIIGASGAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       427 ~k-~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                      +- ......-.++.+...+.+++++++..++.+|..+.......  ..+ ..+.++.++..+++.++.++..|+..+.++
T Consensus       208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~  286 (462)
T 1ibr_B          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (462)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            10 00011113455555666678999999999999886543211  111 115667777777888899999999998888


Q ss_pred             hhccc------------------hHHHHHH---hchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHH
Q 006669          504 CIYMG------------------NKGRAVR---AGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIV  555 (636)
Q Consensus       504 ~~~~~------------------n~~~lv~---~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~  555 (636)
                      +....                  ....+++   ..++|.+++.+.+       .+...+..|..+|..++..-..  .+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~  364 (462)
T 1ibr_B          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV  364 (462)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH
T ss_pred             HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH
Confidence            75420                  0011121   3467788888753       2346788889999888874321  222


Q ss_pred             hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          556 KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                       ..+++.+...+.+.++..|+.|+.+|..++.+.. +..... -..+++.|..++.+.++.+|..|.++|..+..+
T Consensus       365 -~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence             2456777778888889999999999999997533 111111 146789999999999999999999999998764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=1.5e-09  Score=86.95  Aligned_cols=51  Identities=14%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             CCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccC
Q 006669          254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL  305 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~  305 (636)
                      ..+++.||||++.+.|||+++|||+|++.||.+|+.. +.+||+|++.+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED   62 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence            3577999999999999999999999999999999975 47899999987643

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=5e-09  Score=87.41  Aligned_cols=53  Identities=21%  Similarity=0.459  Sum_probs=47.0

Q ss_pred             CCCCcccCccchhhccC----CeecCCCchhhhHHHHHHHcCC--CCCCCCCCcccccC
Q 006669          253 IIPADFLCPISLELMRD----PVIVATGQTYERSYIQRWIDCG--NVTCPKTQQKLEHL  305 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~  305 (636)
                      .+.+++.||||++.+.+    |++++|||+||+.||.+|+..+  ..+||.|++++...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            45788999999999999    9999999999999999999854  57899999987654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.76  E-value=4.2e-07  Score=102.64  Aligned_cols=263  Identities=14%  Similarity=0.128  Sum_probs=182.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcc-hHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYEN-NKGL  430 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~-~k~~  430 (636)
                      ..++.+.+.|.+.++.+|..|+.++..+.+.+++.   +.+.+.++.|..+|.+.++.++.+|+.+|.+++.+.. ....
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence            35677889999999999999999999998866552   2335778999999999999999999999999987432 1000


Q ss_pred             HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc---c
Q 006669          431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY---M  507 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~---~  507 (636)
                      -...+.+..|+..+...++-.+...+.+|..+...++..    ....++.+..++++.++.++..|+.++.++...   +
T Consensus       198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~  273 (591)
T 2vgl_B          198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKD  273 (591)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBT
T ss_pred             hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCC
Confidence            011234667777777788888888888888887543311    124678888888888899999999999998632   2


Q ss_pred             chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-Chh------------------hHH-H---H---HhcC---
Q 006669          508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPE------------------AKI-A---I---VKAS---  558 (636)
Q Consensus       508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~------------------~~~-~---i---~~~g---  558 (636)
                      +.....+-..+++.|+.++ +.++.++..|+..|..++. +|+                  .|. +   +   ....   
T Consensus       274 ~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~  352 (591)
T 2vgl_B          274 SDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIA  352 (591)
T ss_dssp             TBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHH
Confidence            2222222344667777665 4677888888888887764 111                  111 1   1   1222   


Q ss_pred             -cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          559 -TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       559 -~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                       .++.|..++.+.++..+..++..+..++...+....     ..++.|+.++....+.++..+...++.+
T Consensus       353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence             345566666677889999999999999987654332     2457777777777777766666666554

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.75  E-value=7.4e-09  Score=84.37  Aligned_cols=55  Identities=18%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             CCCCcccCccchhhc--cCCeecC--CCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669          253 IIPADFLCPISLELM--RDPVIVA--TGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL  307 (636)
Q Consensus       253 ~~p~~f~CPis~~~m--~dPv~~~--~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l  307 (636)
                      ...+++.||||++.+  .||++.|  |||+||+.||.+|+..+...||.|++++....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            457889999999999  5777777  999999999999998777899999998876544

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.75  E-value=2.1e-09  Score=83.91  Aligned_cols=55  Identities=24%  Similarity=0.478  Sum_probs=48.8

Q ss_pred             CcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccch
Q 006669          256 ADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY  311 (636)
Q Consensus       256 ~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~  311 (636)
                      +++.||||++.+.+|       ++++|||+|++.||.+|+.. +.+||.|+.++...++.+++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence            468899999999998       89999999999999999985 67999999999887776653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.74  E-value=6.2e-08  Score=111.38  Aligned_cols=191  Identities=16%  Similarity=0.130  Sum_probs=147.3

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHH-HHhcCcHHHHHHHHHHHHHccCCC--chhHH
Q 006669          395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQ-ILRAGSMEARENAAATLFSLSLLD--ENKII  471 (636)
Q Consensus       395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~  471 (636)
                      .|.+++..|++.++..+..|+.+|.||+.++..+..+...|+|..++. +|.+.+.+++..|+++|.||+...  +.+..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            456677889999999999999999999998888999999999887665 677789999999999999998764  56778


Q ss_pred             HHhcCchHHHHhhhccC--------------C-------HHHHHHHHHHHHhhhhccc-hHHHHHHhchHHHHHHHhcC-
Q 006669          472 IGASGAIPALVDLLQNG--------------S-------TRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKMLTD-  528 (636)
Q Consensus       472 i~~~g~i~~Lv~LL~~~--------------~-------~~~k~~A~~aL~nL~~~~~-n~~~lv~~g~v~~Lv~lL~~-  528 (636)
                      +.+.|++++|..+++..              .       .....+++.+|.+||...+ ....+...+.++.|+..|.+ 
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            89999999999998631              1       1233467788899986553 45677788999999999844 


Q ss_pred             --CCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcH---HHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          529 --SRNCMVDEALTILSVLASN-PEAKIAIVKASTI---PVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       529 --~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                        ...++...|+.+|..++.. ++....+.+.+..   ..+..+.. .+...+..++.+|.|+.
T Consensus       195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence              4578999999999999985 5556667665532   33333333 33444667889998875

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=6.7e-09  Score=82.31  Aligned_cols=51  Identities=20%  Similarity=0.427  Sum_probs=45.6

Q ss_pred             CCCCcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          253 IIPADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      ..++++.||||++.+.+|       ++++|||+|++.||.+|+.. +.+||.|++++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            457889999999999998       89999999999999999985 6789999988753

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.62  E-value=2.8e-08  Score=80.91  Aligned_cols=57  Identities=18%  Similarity=0.360  Sum_probs=47.7

Q ss_pred             CCCCcccCccchhhccCC---eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          253 IIPADFLCPISLELMRDP---VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dP---v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      ...+++.||||++.|.+|   ++++|||+|++.||.+|+.. +.+||.|+.++......+|
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            345678999999999877   44699999999999999974 5799999999887766554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.60  E-value=5.6e-07  Score=101.62  Aligned_cols=253  Identities=17%  Similarity=0.147  Sum_probs=184.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHH-hccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSL-SKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNKG  429 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~L-a~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k~  429 (636)
                      +.+..+-+.|++++.+.+..++..+-.+ ..+.+ .      ..+.+.+++++.+++...+..+..++.+++.. ++.. 
T Consensus        13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-   84 (591)
T 2vgl_B           13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-V------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-   84 (591)
T ss_dssp             SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-C------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-h------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-
Confidence            4578888999999988888887766544 33221 1      23567788999999999998888888887662 2211 


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccch
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN  509 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n  509 (636)
                          .-++..+..-|.++++..+..|+.+|.++.. .+..     ...++.+..++.+.++.+++.|+.++.++....+.
T Consensus        85 ----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~  154 (591)
T 2vgl_B           85 ----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ  154 (591)
T ss_dssp             ----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC
T ss_pred             ----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh
Confidence                1245666667778899999999999999862 2211     13457788999999999999999999999875433


Q ss_pred             HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669          510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR  588 (636)
Q Consensus       510 ~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  588 (636)
                        .+.+.+.++.|.++|.+.++.++..|+.+|..++...... ......+.+..|+..+...++..+...+.+|..++..
T Consensus       155 --~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~  232 (591)
T 2vgl_B          155 --MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK  232 (591)
T ss_dssp             --CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC
T ss_pred             --hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC
Confidence              2233688999999999999999999999999999854311 0001113466777777778888888888888888865


Q ss_pred             ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          589 DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       589 ~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++....     ..++.+..++++.++.++..|.+++..+..
T Consensus       233 ~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          233 DDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             SHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred             ChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence            554333     246677777888888888888888887753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.51  E-value=3e-08  Score=89.22  Aligned_cols=55  Identities=20%  Similarity=0.440  Sum_probs=48.9

Q ss_pred             CCcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          255 PADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       255 p~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      ++++.||||++.+.||       ++++|||+|++.||.+|+.. +.+||.|++.+....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence            6789999999999999       99999999999999999985 4699999999987666554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.51  E-value=1.9e-06  Score=100.92  Aligned_cols=273  Identities=14%  Similarity=0.107  Sum_probs=184.8

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch
Q 006669          352 VAIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN  427 (636)
Q Consensus       352 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~-~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~  427 (636)
                      ..++.+++.+.+.  +.+++..|++.+..+...-..+-. .......++.+...+.+.+.+++..++.+|..+.. .+..
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            3567778888776  688999999999987753221100 00111246677777777888999999999999886 3332


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-------------------hhHHHH--hcCchHHHHhhhc
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-------------------NKIIIG--ASGAIPALVDLLQ  486 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-------------------~~~~i~--~~g~i~~Lv~LL~  486 (636)
                      -...+....++.++..+.+.+..++..|+.++..++....                   ....+.  -...++.++..+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            1222233667888887877788999999988888754310                   000010  0235666777775


Q ss_pred             c-------CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--hHHHHHhc
Q 006669          487 N-------GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE--AKIAIVKA  557 (636)
Q Consensus       487 ~-------~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~~~~i~~~  557 (636)
                      .       .+...++.|+.+|..++...+.  .++ ..+++.+...+.+.+..+++.|+.+|..++....  ...... .
T Consensus       332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~  407 (876)
T 1qgr_A          332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I  407 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence            2       3457888888999888754332  122 3567777888888899999999999999998532  222222 3


Q ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHH--HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENL--ACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~--~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      ..++.++..+.+.++.+|..|+++|.+++...+...  ... -..+++.|+..+.+. ++++..|.++|..+.+.
T Consensus       408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            578899999988889999999999999987543211  000 123466777777764 88999999999887653

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.48  E-value=5.8e-08  Score=73.24  Aligned_cols=47  Identities=21%  Similarity=0.416  Sum_probs=41.7

Q ss_pred             CcccCccchhhccC----CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          256 ADFLCPISLELMRD----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       256 ~~f~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      +++.||||++.+.+    |++++|||+|++.||.+|+..+ .+||.|+++++
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            46789999999977    8889999999999999999865 88999998764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=1.1e-07  Score=76.58  Aligned_cols=52  Identities=17%  Similarity=0.437  Sum_probs=44.6

Q ss_pred             CCCCcccCccchhhccCCeec---CCCchhhhHHHHHHHcCCCCCCCCCCcccccC
Q 006669          253 IIPADFLCPISLELMRDPVIV---ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHL  305 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~---~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~  305 (636)
                      ....+..||||++.+.+|+.+   +|||+|++.||.+|+.. +.+||.|++++...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence            456788999999999888766   99999999999999985 45899999987653

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=2.7e-08  Score=79.20  Aligned_cols=52  Identities=17%  Similarity=0.439  Sum_probs=46.0

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT  306 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~  306 (636)
                      ...+++.||||++.+.+ ++++|||+|++.||.+|+. .+.+||.|++++....
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence            45678999999999999 9999999999999999998 5789999998876544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.46  E-value=4.1e-06  Score=98.15  Aligned_cols=272  Identities=14%  Similarity=0.099  Sum_probs=185.1

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhC-c
Q 006669          353 AIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRIIIAD--AGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIY-E  425 (636)
Q Consensus       353 ~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~e--~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~-~  425 (636)
                      .++.|++.+.++  ++..+..++..+..++.....  ..+..  ...++.+...+..+  +..++..|+.+|.++... .
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            588999999988  899999999999999864211  11111  23566777778766  578999999999987652 1


Q ss_pred             chH-HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh-HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          426 NNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK-IIIGASGAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       426 ~~k-~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                      .+- ........++.+...+.+.+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+.++
T Consensus       207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            110 00111124566666666778899999999999886543211 1112225677777777777888999999888888


Q ss_pred             hhccc---------------------hHHHHHHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHH
Q 006669          504 CIYMG---------------------NKGRAVRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIV  555 (636)
Q Consensus       504 ~~~~~---------------------n~~~lv~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~  555 (636)
                      +....                     +..+-.-..+++.+++.+..       .+..++..|..+|..++.....  .+.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~  364 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV  364 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH
Confidence            65320                     00010113467888888852       3456778888888888764321  111


Q ss_pred             hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          556 KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      . .+++.+...+.+.++..|+.|+.+|..++.... +...... ..+++.|+..+.+.++.+|..|.++|..+.+.
T Consensus       365 ~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          365 P-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             H-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            1 345666677777889999999999999997654 3333222 34788899999999999999999999988764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.46  E-value=7.4e-08  Score=76.11  Aligned_cols=48  Identities=29%  Similarity=0.455  Sum_probs=42.2

Q ss_pred             CcccCccchhhccCC-eecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          256 ADFLCPISLELMRDP-VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       256 ~~f~CPis~~~m~dP-v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      .+..||||++.+.+| ++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            456799999999997 78999999999999999974 4799999988753

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.45  E-value=3.7e-08  Score=74.86  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      .+++.||||++.+.||++++|||+|++.||.+|    ...||.|++.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            467889999999999999999999999999873    5789999987754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.42  E-value=6.4e-06  Score=93.45  Aligned_cols=250  Identities=14%  Similarity=0.116  Sum_probs=153.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGL  430 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~  430 (636)
                      ..+..+.+.|.++++.++..|++.|..+..  ++    +. ...++.+.++|.+.++.++..|+.++.++.. +++..  
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--  177 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--  177 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence            367788999999999999999999999873  22    22 2457889999999999999999999999987 44322  


Q ss_pred             HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc---------------CCHHHHHH
Q 006669          431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN---------------GSTRGRKD  495 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~---------------~~~~~k~~  495 (636)
                         .+.++.+..+|.+.++.++..|+.+|..++..+..... .-...++.++.+|.+               .++-.+..
T Consensus       178 ---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~  253 (618)
T 1w63_A          178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR  253 (618)
T ss_dssp             ---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred             ---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence               25777888888888999999999999999865422111 112677888877763               26677777


Q ss_pred             HHHHHHhhhhccchHHHHHHhchHHHHHHHhcC------CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcC
Q 006669          496 AATALFNLCIYMGNKGRAVRAGIISALLKMLTD------SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRT  569 (636)
Q Consensus       496 A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~  569 (636)
                      .+.+|..++..++...    ....+.|..++..      .+..++-.|+.++..+...+..+.     .++..|..++.+
T Consensus       254 il~~L~~l~~~~~~~~----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~  324 (618)
T 1w63_A          254 ILRLLRILGRNDDDSS----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLN  324 (618)
T ss_dssp             HHHHHHHHTTTCHHHH----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCCHHHH----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhC
Confidence            8888888876543211    1233333333321      223455555555555543322111     234455555555


Q ss_pred             CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       570 ~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      .++.+|..|+..|..++...+..    ++ .....+...+.+.+..+|++|..+|..+.
T Consensus       325 ~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~  378 (618)
T 1w63_A          325 NDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALV  378 (618)
T ss_dssp             SSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred             CCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence            55555555555555555432221    11 12333444444444555555555544443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.42  E-value=1.2e-05  Score=91.20  Aligned_cols=250  Identities=14%  Similarity=0.074  Sum_probs=173.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch-HHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN-KGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~-k~~I  431 (636)
                      .++.+.+.|++.++.++..|+.++..+.+.+++...     +.++.+..+|...|+.++..|+.+|..++..... ...+
T Consensus       143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~  217 (618)
T 1w63_A          143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF  217 (618)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence            477888899999999999999999999987775432     5678888899889999999999999999864321 1112


Q ss_pred             HHhCChHHHHHHHhc---------------CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc------cCCH
Q 006669          432 MLAGAIPSIVQILRA---------------GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ------NGST  490 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~------~~~~  490 (636)
                        ...++.++.+|+.               .++-.+...+.+|..+...+...    ....++.|..++.      +.+.
T Consensus       218 --~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~  291 (618)
T 1w63_A          218 --RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGN  291 (618)
T ss_dssp             --HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHH
T ss_pred             --HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHH
Confidence              3678888888864               36778888889999887654321    1134445555543      1234


Q ss_pred             HHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC
Q 006669          491 RGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG  570 (636)
Q Consensus       491 ~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~  570 (636)
                      .+...|+.++.++...+    .+. ..++..|..++.+.++.++..|+..|..++....   .++. .....++..+.+.
T Consensus       292 aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d~  362 (618)
T 1w63_A          292 AILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKDL  362 (618)
T ss_dssp             HHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGSS
T ss_pred             HHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccCC
Confidence            67778888888764321    122 2467788888887788888888888888876321   1222 3456777777777


Q ss_pred             CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          571 LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       571 s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +..+|..|+.+|..++...  +...+     ++.|...+.+.+...|+.+...+..+..
T Consensus       363 d~~Ir~~alelL~~l~~~~--nv~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          363 DVSIKRRAMELSFALVNGN--NIRGM-----MKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             CHHHHHHHHHHHHHHCCSS--STHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHcccc--cHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            7888888888888888643  22222     3556666666677777777776666653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.38  E-value=1.7e-07  Score=70.70  Aligned_cols=47  Identities=17%  Similarity=0.520  Sum_probs=41.4

Q ss_pred             CCcccCccchhhccC---CeecC-CCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669          255 PADFLCPISLELMRD---PVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQKL  302 (636)
Q Consensus       255 p~~f~CPis~~~m~d---Pv~~~-~G~t~~r~~I~~w~~~~~~~cP~~~~~l  302 (636)
                      .++..||||++.+.+   ++.++ |||.|++.||.+|+.. +.+||.|+.++
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~   53 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence            456789999999988   88887 9999999999999975 67899999865

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.35  E-value=2.5e-07  Score=77.76  Aligned_cols=50  Identities=14%  Similarity=0.387  Sum_probs=43.8

Q ss_pred             CCCcccCccchhhccC---CeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          254 IPADFLCPISLELMRD---PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       254 ~p~~f~CPis~~~m~d---Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      ..++..||||++.+.+   ++.++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            4567899999999988   888999999999999999974 5799999988754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.35  E-value=2.4e-07  Score=81.22  Aligned_cols=50  Identities=12%  Similarity=0.239  Sum_probs=42.9

Q ss_pred             CCcccCccchhhccCCe------------------ecCCCchhhhHHHHHHHc----CCCCCCCCCCccccc
Q 006669          255 PADFLCPISLELMRDPV------------------IVATGQTYERSYIQRWID----CGNVTCPKTQQKLEH  304 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv------------------~~~~G~t~~r~~I~~w~~----~~~~~cP~~~~~l~~  304 (636)
                      +.+..||||++.|.+|+                  +++|||.|++.||.+|+.    ..+.+||.|+..+..
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            45679999999998886                  789999999999999995    346789999987754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.35  E-value=4.7e-06  Score=97.37  Aligned_cols=270  Identities=14%  Similarity=0.135  Sum_probs=176.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch----
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN----  427 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~----  427 (636)
                      .++.+.+.+.+.++..+..|+..+..++.... +.-.... ...++.|+..+...++.++..++.+|.+++..-..    
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence            45566677788899999999999999986532 2111111 24688899999888999999999999988762110    


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--hhHHHHh--cCchHHHHhhhccC--CHHHHHHHHHHHH
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--NKIIIGA--SGAIPALVDLLQNG--STRGRKDAATALF  501 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~LL~~~--~~~~k~~A~~aL~  501 (636)
                      ...  -...++.++..+++. +.++..|+++|.+++..-.  ....+..  ...++.|+.++.+.  ++.++..++.+|.
T Consensus       449 ~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          449 QQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence            111  123467777778765 8899999999998864211  0011111  24567778888743  3678999999999


Q ss_pred             hhhhccchH-HHHHHhchHHHHHHHhcCC---------------CHHHHHHHHHHHHHHhcChhhH-HHHHhcCcHHHHH
Q 006669          502 NLCIYMGNK-GRAVRAGIISALLKMLTDS---------------RNCMVDEALTILSVLASNPEAK-IAIVKASTIPVLI  564 (636)
Q Consensus       502 nL~~~~~n~-~~lv~~g~v~~Lv~lL~~~---------------~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv  564 (636)
                      .+....+.. ...+ ...++.+++.+.+.               ...++..++.+|.+++..-... ... -...++.++
T Consensus       526 ~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~  603 (861)
T 2bpt_A          526 TMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFF  603 (861)
T ss_dssp             HHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHH
T ss_pred             HHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHH
Confidence            987655432 2222 24667777776421               3345667888888887632211 001 124567778


Q ss_pred             HHHcCCCH-HHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          565 VLLRTGLP-RNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       565 ~lL~~~s~-~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ..+...+. ..++.+..++..++...+....... ...++.|...+.+.++.++..|..++..+.+
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~  668 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN  668 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            88877666 7899998888888754333222211 2267788888877788889888888876654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.33  E-value=4.3e-05  Score=73.97  Aligned_cols=220  Identities=17%  Similarity=0.200  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cchH
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-ENNK  428 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~~k  428 (636)
                      ...+..|..+|...+..++..|+..|..+-+.- ..-+..+.+ ..++.++.++++.|..+.-.|+.+|..|-.+ +-..
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            346888999999999999999999999988763 223333333 5689999999999999999999999988763 3223


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~  508 (636)
                      ..+..  .+..++.++++++.-.+++|+..+..+......+      +.+..+..++.+.+.+.|..+++++.|++...+
T Consensus       111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            33322  2467888888999999999999999995444333      345678888888899999999999999987664


Q ss_pred             hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHH
Q 006669          509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL--RTGLPRNKENAAAI  581 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL--~~~s~~~ke~A~~~  581 (636)
                      +...+  .+++.-+-.+|.+.++.+++.|+.+|..+.+.|=-.+.+-+--.+-..++-|  ..|.|..+..|-.+
T Consensus       183 D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v  255 (265)
T 3b2a_A          183 DSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV  255 (265)
T ss_dssp             SCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred             CHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            43322  2355557788888999999999999999998654322222222344444433  35778888777544

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.33  E-value=1.1e-05  Score=94.12  Aligned_cols=273  Identities=12%  Similarity=0.100  Sum_probs=182.7

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHH--hcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhC-c
Q 006669          352 VAIEALVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIA--DAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIY-E  425 (636)
Q Consensus       352 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~--e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~-~  425 (636)
                      ..++.|++.+.++ ++..+..|+..+..+++.-......+.  -...++.++..+.+.  +..++..|+.+|.++... .
T Consensus       134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~  213 (861)
T 2bpt_A          134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK  213 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4689999999988 899999999999998864221100000  012456677777776  788999999999887431 1


Q ss_pred             chH-HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch--hHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHh
Q 006669          426 NNK-GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN--KIIIGASGAIPALVDLLQNGSTRGRKDAATALFN  502 (636)
Q Consensus       426 ~~k-~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~n  502 (636)
                      .+- ........++.+...+.+++++++..++.+|..+......  ...+ ....++.+...+.+.+..++..|+..+..
T Consensus       214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~  292 (861)
T 2bpt_A          214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWST  292 (861)
T ss_dssp             HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            110 0000122456666777778899999999999988643221  1111 11456666677777889999999999988


Q ss_pred             hhhccch------------------HHHHHHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHHhc
Q 006669          503 LCIYMGN------------------KGRAVRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIVKA  557 (636)
Q Consensus       503 L~~~~~n------------------~~~lv~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~~~  557 (636)
                      ++.....                  -...+ ..+++.++..|.+       .+..++..|..+|..++..-..  .+. .
T Consensus       293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~  368 (861)
T 2bpt_A          293 ICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-E  368 (861)
T ss_dssp             HHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-H
T ss_pred             HHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-H
Confidence            8754211                  01111 4578888888864       2346778888899888864221  111 1


Q ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      ..++.+...+.+.++..|+.|+.+|..++.... +....... .+++.|+..+.+.++.+|..|.++|..+.++
T Consensus       369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T 2bpt_A          369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            245566666777789999999999999997643 33333322 4688888999999999999999988877654

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.33  E-value=4.6e-07  Score=71.74  Aligned_cols=50  Identities=18%  Similarity=0.433  Sum_probs=42.3

Q ss_pred             CCCcccCccchhhcc---CCeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          254 IPADFLCPISLELMR---DPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       254 ~p~~f~CPis~~~m~---dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      ...+..||||++.+.   ++++++|||+|++.||.+|+.. +.+||.|+..+..
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            356788999999884   5678999999999999999985 4679999988754

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.32  E-value=9.8e-08  Score=76.96  Aligned_cols=45  Identities=18%  Similarity=0.275  Sum_probs=41.0

Q ss_pred             CCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          255 PADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      .+++.||||++.+.|||++||||+ ||+.|+.+|     ..||.|++++..
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            456889999999999999999999 999999999     789999988754

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.31  E-value=1.9e-07  Score=98.17  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             cccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669          257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT  306 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~  306 (636)
                      +..||||++.+.|||++||||+||+.||..|+..+..+||.|++++....
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            37999999999999999999999999999999866789999999886543

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=2.8e-07  Score=74.34  Aligned_cols=49  Identities=14%  Similarity=0.446  Sum_probs=43.0

Q ss_pred             CCcccCccchhhccCC---eecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          255 PADFLCPISLELMRDP---VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       255 p~~f~CPis~~~m~dP---v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      .++..||||++.+.++   +.++|||.|++.||.+|+.. +.+||.|++.+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            4567899999999888   77999999999999999975 5789999988754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.25  E-value=8.1e-06  Score=87.89  Aligned_cols=232  Identities=13%  Similarity=0.128  Sum_probs=158.5

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Ccch
Q 006669          352 VAIEALVRKLSSR--SVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENN  427 (636)
Q Consensus       352 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~-~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~  427 (636)
                      ..++.++..+.+.  +..+|..|++.+..+...-.++-. .....-.++.+...+.+.+..++..++.+|..+.. .+..
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~  251 (462)
T 1ibr_B          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (462)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3577888888887  789999999999886532111100 00001135666677777889999999999999886 2211


Q ss_pred             -HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh------------------HHHHh---cCchHHHHhhh
Q 006669          428 -KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK------------------IIIGA---SGAIPALVDLL  485 (636)
Q Consensus       428 -k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~------------------~~i~~---~g~i~~Lv~LL  485 (636)
                       ... +..+.++.++..+++.+.+++..|+.++..++......                  ..+.+   ...+|.++..+
T Consensus       252 ~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l  330 (462)
T 1ibr_B          252 METY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (462)
T ss_dssp             CTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence             111 11155677777788888999999999888876432000                  00111   23556666666


Q ss_pred             ccC-------CHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HHHHHh
Q 006669          486 QNG-------STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA--KIAIVK  556 (636)
Q Consensus       486 ~~~-------~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~  556 (636)
                      .+.       +...+..|+.+|..|+..-+.  .++ ..+++.+.+.+.+.+...++.|+.+|..++.....  -... -
T Consensus       331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l  406 (462)
T 1ibr_B          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V  406 (462)
T ss_dssp             TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T
T ss_pred             HhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-H
Confidence            432       346788899999998765442  222 35778888889889999999999999999974321  1111 1


Q ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669          557 ASTIPVLIVLLRTGLPRNKENAAAILLSLCKR  588 (636)
Q Consensus       557 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  588 (636)
                      ..++|.++..|.+.++.+|..|+++|.+++..
T Consensus       407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            46789999999998999999999999999864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.20  E-value=2.5e-06  Score=104.45  Aligned_cols=272  Identities=11%  Similarity=0.067  Sum_probs=184.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      ..+..|++.+.+++.+.|..|...|.+..+.+...-..-.....++.|+..|.+.++.++..|+.+|.+++..-.. ..+
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~   84 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV   84 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence            3588899999999999999999999876543211000000113467788889888999999999999999863221 111


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh------HHHHhcCchHHHHhhhc-cCCHHHHHHHHHHHHhhh
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK------IIIGASGAIPALVDLLQ-NGSTRGRKDAATALFNLC  504 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~  504 (636)
                        ...++.++..|.++++.+|..|+.+|..++..-...      ..-.....+|.|+..+. +.++..+..|+.+|..++
T Consensus        85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C           85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence              234567777777777888988888888875332111      01112357889999998 478899999999999987


Q ss_pred             hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCC-HHHHHHHHHHHH
Q 006669          505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGL-PRNKENAAAILL  583 (636)
Q Consensus       505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~  583 (636)
                      ...+..-.-.-...++.|+..|.+.+..++..|+.+|..++......  + -...++.++..|.... +..+..++.++.
T Consensus       163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~  239 (1230)
T 1u6g_C          163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIA  239 (1230)
T ss_dssp             HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence            53221000011457788888888888999999999999999854322  1 2346888888886543 345667788887


Q ss_pred             HhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          584 SLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       584 ~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      .++...+..... .-...++.+...+.+.++.+|+.|..++..+.+.
T Consensus       240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            777644331110 0135688888888888889999999888877653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.18  E-value=1.3e-05  Score=79.33  Aligned_cols=182  Identities=12%  Similarity=0.093  Sum_probs=135.8

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHHHHh-cCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhccchHHHHHH
Q 006669          439 SIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGA-SGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYMGNKGRAVR  515 (636)
Q Consensus       439 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~-~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~~n~~~lv~  515 (636)
                      .+.+.+.+.++..|..|+..|..+... ++...  .. ...++.|..++. +.+..++..|+.+|..|+..-...-.-.-
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            477778888999999999999988654 22100  01 145677888884 88999999999999999854322111122


Q ss_pred             hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc-ChHH-H
Q 006669          516 AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR-DTEN-L  593 (636)
Q Consensus       516 ~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~-~~~~-~  593 (636)
                      ..+++.|++.+.+.+..+++.|..+|..++.....      ...++.+...+.+.++.+|+.++..|..+... +++. .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~  170 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN  170 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence            34899999999999999999999999999885431      13577888888888999999999999985443 3331 1


Q ss_pred             HHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          594 ACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       594 ~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      .... ...++.|..++.+..+.+|..|..++..+.+
T Consensus       171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1122 2478999999999999999999999988764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.18  E-value=8.9e-06  Score=80.58  Aligned_cols=181  Identities=12%  Similarity=0.128  Sum_probs=135.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhhC--cchHHHH
Q 006669          356 ALVRKLSSRSVEERRAAVAEIRSLSKRSTDNR-IIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSIY--ENNKGLI  431 (636)
Q Consensus       356 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r-~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~--~~~k~~I  431 (636)
                      .+.+.+.+.++..|..|+..|..+....+... ..+  ...++.|...+. ..+..++..|+.+|..|+..  +..... 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-
Confidence            37788889999999999999999887532210 000  124667888884 88999999999999999862  211111 


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-h-
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-N-  509 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n-  509 (636)
                       -...++.++..+.+.+..++..|..+|..+......      ...++.+...+++.++.++..++..|..+....+ . 
T Consensus        96 -~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 -ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             -HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             -HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence             133688888889888999999999999998764321      1357788888998899999999999999644322 1 


Q ss_pred             -HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669          510 -KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN  547 (636)
Q Consensus       510 -~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  547 (636)
                       -...+ ..++|.|+.++.+.+..++..|..+|..++..
T Consensus       169 ~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          169 LNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence             12222 35899999999999999999999999988864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.14  E-value=5e-07  Score=81.05  Aligned_cols=57  Identities=21%  Similarity=0.444  Sum_probs=50.6

Q ss_pred             CCCcccCccchhhccCC-------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccch
Q 006669          254 IPADFLCPISLELMRDP-------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNY  311 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dP-------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~  311 (636)
                      .++++.||||++.+.+|       +..+|||+|+..||.+|+.. +.+||+|+..+...++.|++
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence            35779999999999998       99999999999999999985 57999999999888877764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.09  E-value=7.9e-07  Score=71.75  Aligned_cols=45  Identities=18%  Similarity=0.275  Sum_probs=39.8

Q ss_pred             CCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          255 PADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      .+++.||||++.+.|||++||||+ ||+.|++++     ..||.|++++..
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence            456789999999999999999999 999999753     789999998755

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.09  E-value=8e-07  Score=75.06  Aligned_cols=67  Identities=10%  Similarity=0.300  Sum_probs=50.1

Q ss_pred             CCcccCccchhhccCCeec---CCCchhhhHHHHHHHcC----C---CCCCCC--CCcc--cccCCcccchhHHHHHHHH
Q 006669          255 PADFLCPISLELMRDPVIV---ATGQTYERSYIQRWIDC----G---NVTCPK--TQQK--LEHLTLTPNYVLRSLISQW  320 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~---~~G~t~~r~~I~~w~~~----~---~~~cP~--~~~~--l~~~~l~pn~~lr~lI~~w  320 (636)
                      .+.|.||||++.+.+|+++   +|||.||+.|+++|+..    |   ...||.  |+..  ++...+ .+....+++++|
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky   81 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRY   81 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHH
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHH
Confidence            4578999999999999886   79999999999999863    3   246998  9887  544333 233345667777


Q ss_pred             Hh
Q 006669          321 CT  322 (636)
Q Consensus       321 ~~  322 (636)
                      .+
T Consensus        82 ~~   83 (94)
T 1wim_A           82 KK   83 (94)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.08  E-value=0.00049  Score=77.96  Aligned_cols=253  Identities=14%  Similarity=0.094  Sum_probs=169.7

Q ss_pred             HHHHHHHHh--cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHH
Q 006669          353 AIEALVRKL--SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL  430 (636)
Q Consensus       353 ~i~~Lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~  430 (636)
                      .++.+.+.|  .+.++.++..|+.++..+.+.+++.-   ...+.++.|..+|...|+.++.+|+.+|..++.....  .
T Consensus       147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~  221 (621)
T 2vgl_A          147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E  221 (621)
T ss_dssp             HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H
Confidence            456677888  78899999999999999988766432   1247899999999988999999999999998863221  1


Q ss_pred             HHHhCChHHHHHHHh----cC-------------cHHHHHHHHHHHHHccCCCc--hhHHHHhcCchHHHHhhhcc----
Q 006669          431 IMLAGAIPSIVQILR----AG-------------SMEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQN----  487 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~----~~-------------~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~LL~~----  487 (636)
                      +  ...++.+++.|+    .+             ++-.+.....+|..+...++  .+..+.  ..+..++..+.+    
T Consensus       222 ~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks  297 (621)
T 2vgl_A          222 F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKS  297 (621)
T ss_dssp             H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSC
T ss_pred             H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCccc
Confidence            1  134455555443    22             46788888888888775432  222222  233333332211    


Q ss_pred             -----CC--HHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcH
Q 006669          488 -----GS--TRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTI  560 (636)
Q Consensus       488 -----~~--~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i  560 (636)
                           .+  ..+...++.++..+...+    .+.. .++..|..+|.+.++.++..|+..|..++........+ . ...
T Consensus       298 ~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~-~~~  370 (621)
T 2vgl_A          298 KKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K-THI  370 (621)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H-TTH
T ss_pred             ccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H-HHH
Confidence                 12  256677778887775211    2222 46778889998888999999999999998754322222 2 456


Q ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          561 PVLIVLLR-TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       561 ~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      ..++..|. +.++.+|..|+.+|..++.  +.+...+     +..|...+...+...++.+...+..+.
T Consensus       371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          371 ETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQI-----VAEMLSYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            77888888 7888999999999999984  3454444     345566666667777766666555553

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.04  E-value=0.00011  Score=71.27  Aligned_cols=220  Identities=13%  Similarity=0.052  Sum_probs=158.8

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhhC--cchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHH
Q 006669          395 AIPVLVNLLTTDDVMTQEHAVTAILNLSIY--ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKII  471 (636)
Q Consensus       395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~--~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~  471 (636)
                      .+..|..+|+..|+.++.+|+.+|.++-+.  ...+..+. ...++.+++++++.+..+...|+.+|..|-..-. ....
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            456799999999999999999999999874  22333333 4578999999999999999999999999865432 1111


Q ss_pred             HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Q 006669          472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK  551 (636)
Q Consensus       472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~  551 (636)
                      ..  -.+.+|.+++.++++-....|+..+..|......      .+++..+.+++.+.+..++..++.+|.++++..+..
T Consensus       113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            11  2457888999999999999999999998433222      246677888898899999999999999999854322


Q ss_pred             HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh--HHHHHHHHcCChHHHHHhh-hcCCHHHHHHHHHHHHHh
Q 006669          552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT--ENLACISRLGAVIPLTELT-KSGTERAKRKATSLLEHL  627 (636)
Q Consensus       552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~--~~~~~i~~~G~i~~L~~Ll-~~g~~~~k~kA~~lL~~l  627 (636)
                      ..+  .+.+.-+-++|++.++..++.|..+|..+....-  +....+.  ++....-.+. ..|.|..+.||...-..+
T Consensus       185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            111  1344556677898999999999999998876421  1111111  1222223444 569999999998776655

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.95  E-value=3.8e-05  Score=93.85  Aligned_cols=229  Identities=12%  Similarity=0.121  Sum_probs=158.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchH--
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNK--  428 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k--  428 (636)
                      ..++.|++.|.+.++++|..|+..|..++...+. ...     ..++.|+..|.+++..++..|..+|..++..-...  
T Consensus        48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~-----~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence            4688899999999999999999999999865433 121     24677888888888889999999998887621111  


Q ss_pred             ----HHHHHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          429 ----GLIMLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       429 ----~~I~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                          ..-.....++.|+..+. ++++..+..|+.+|..++........-.....++.|+..+.+.++.+++.|+.+|..+
T Consensus       123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l  202 (1230)
T 1u6g_C          123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL  202 (1230)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence                11112456888888888 4789999999999999863211000000124667788888888899999999999999


Q ss_pred             hhccchHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcCCCHHHHHHHHH
Q 006669          504 CIYMGNKGRAVRAGIISALLKMLTDS-RNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRTGLPRNKENAAA  580 (636)
Q Consensus       504 ~~~~~n~~~lv~~g~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~ke~A~~  580 (636)
                      +...+..  +. ...++.+++.|.+. +...+..++.++..++.....  .+..  ...++.++..+...++.+|+.|+.
T Consensus       203 ~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~  277 (1230)
T 1u6g_C          203 VMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQ  277 (1230)
T ss_dssp             TTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred             HHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            8654432  22 34678888887543 234555677777777653211  1211  357889999998888889999999


Q ss_pred             HHHHhhccCh
Q 006669          581 ILLSLCKRDT  590 (636)
Q Consensus       581 ~L~~L~~~~~  590 (636)
                      ++..++...+
T Consensus       278 ~l~~l~~~~~  287 (1230)
T 1u6g_C          278 AFESFVRRCP  287 (1230)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHHHHCh
Confidence            8888876543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.93  E-value=3.5e-06  Score=65.68  Aligned_cols=48  Identities=23%  Similarity=0.254  Sum_probs=42.5

Q ss_pred             CCcccCccchhhccCCeec--CCCch-hhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          255 PADFLCPISLELMRDPVIV--ATGQT-YERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~--~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      +++..|+||++-..|++++  ||||. +|..|+.+|+.. +..||.|++++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            4567899999999999988  99999 899999999974 578999999874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=5.4e-06  Score=67.86  Aligned_cols=48  Identities=21%  Similarity=0.355  Sum_probs=38.6

Q ss_pred             CcccCccchhhccC--------------Ceec-CCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          256 ADFLCPISLELMRD--------------PVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       256 ~~f~CPis~~~m~d--------------Pv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      ++-.|+||++.|.+              ++.+ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            45568888888876              4454 59999999999999985 4699999988754

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.90  E-value=0.0014  Score=74.24  Aligned_cols=253  Identities=13%  Similarity=0.113  Sum_probs=175.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCChHHHHHHHHHHHHhhh-CcchHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL--TTDDVMTQEHAVTAILNLSI-YENNKG  429 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL--~s~d~~~~e~Av~aL~nLs~-~~~~k~  429 (636)
                      .+..+.+.|.++++.++-.|++.|.++..  ++    +.+ ..++.+.++|  .+.++.++..|+.++..+.. +++.. 
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-  183 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS--RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-  183 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-
Confidence            56778889999999999999999999853  33    222 3457888899  78899999999999999887 33221 


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc----cC-------------CHHH
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ----NG-------------STRG  492 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~----~~-------------~~~~  492 (636)
                        -..+.++.+.++|.+.++.++.+|+.+|..++..+..  .  -...++.++..|.    .+             ++=.
T Consensus       184 --~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~  257 (621)
T 2vgl_A          184 --PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL  257 (621)
T ss_dssp             --CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred             --CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence              1247899999999888999999999999998754421  1  1134455554443    21             4567


Q ss_pred             HHHHHHHHHhhhhcc--chHHHHHHhchHHHHHHHhcC-C----------CHHHHHHHHHHHHHHhcChhhHHHHHhcCc
Q 006669          493 RKDAATALFNLCIYM--GNKGRAVRAGIISALLKMLTD-S----------RNCMVDEALTILSVLASNPEAKIAIVKAST  559 (636)
Q Consensus       493 k~~A~~aL~nL~~~~--~n~~~lv~~g~v~~Lv~lL~~-~----------~~~~~~~Al~~L~~La~~~~~~~~i~~~g~  559 (636)
                      +...+..|..++..+  +.+..+.+  .+..++..+.+ +          ...+.-+|+.++..+...++...     .+
T Consensus       258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~  330 (621)
T 2vgl_A          258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA  330 (621)
T ss_dssp             HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence            777778887776532  22333332  44444443322 1          22677788888888875443332     34


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhh-cCCHHHHHHHHHHHHHhhc
Q 006669          560 IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTK-SGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       560 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~-~g~~~~k~kA~~lL~~l~~  629 (636)
                      +..|..+|.+.++.+|-.|+..|..++...+.  ..+++ .....++..+. +.+..+|.+|..+|-.+..
T Consensus       331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~  398 (621)
T 2vgl_A          331 CNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVK-THIETVINALKTERDVSVRQRAVDLLYAMCD  398 (621)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence            66788888878899999999999999987642  11222 24566667677 8888999999998887754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.90  E-value=4.2e-06  Score=65.01  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             cccCccchhhccCCeec--CCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          257 DFLCPISLELMRDPVIV--ATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~~--~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      +..|+||++-.+|++++  ||||. +|+.|+.+|+.. +..||.|++++..
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence            45699999999999998  99998 999999999975 4789999998753

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.88  E-value=2.6e-06  Score=76.22  Aligned_cols=120  Identities=17%  Similarity=0.164  Sum_probs=91.9

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669          393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII  472 (636)
Q Consensus       393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i  472 (636)
                      ...++.|+.+|.++++.++..|+.+|.++..           ..++.|+..|++.++.++..|+++|.++..        
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            3567889999999999999988888876532           136889999999999999999999998752        


Q ss_pred             HhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006669          473 GASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSV  543 (636)
Q Consensus       473 ~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~  543 (636)
                        ..+++.|+.+|.+.++.++..|+.+|.++.          ...+++.|++++.+.+..++..|+.+|..
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence              246899999999999999999999999875          23578999999988888999999888764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.00021  Score=71.32  Aligned_cols=190  Identities=9%  Similarity=0.116  Sum_probs=135.3

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHH-ccCC-CchhHHHHh-cCchHHHHhhh-ccCCHHHHHHHHHHHHhhhhccc--hHHHH
Q 006669          440 IVQILRAGSMEARENAAATLFS-LSLL-DENKIIIGA-SGAIPALVDLL-QNGSTRGRKDAATALFNLCIYMG--NKGRA  513 (636)
Q Consensus       440 Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~-~~~~~~i~~-~g~i~~Lv~LL-~~~~~~~k~~A~~aL~nL~~~~~--n~~~l  513 (636)
                      +.+.+.+.++.-|..|+..|.. +... .+....... ...+..|...+ ++.+..++..|+.+|..|+..-.  .-..-
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4456678899999999999999 7632 211100111 14567778888 67889999999999999985332  11101


Q ss_pred             HHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH--hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-
Q 006669          514 VRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV--KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-  590 (636)
Q Consensus       514 v~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~--~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-  590 (636)
                      ...-++|.+++.+.+....+++.+..+|..++.+-+- ....  -...++.|+..|.+.++.+|+.++.+|..++...+ 
T Consensus       101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            1123799999999998899999999999888873210 0000  01256788888888899999999999998886554 


Q ss_pred             --HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          591 --ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       591 --~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                        ......+....++.|..++.+.++.+|..|..+|..+.+.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence              2222323256899999999999999999999999987653

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.80  E-value=3.6e-06  Score=87.87  Aligned_cols=46  Identities=11%  Similarity=0.274  Sum_probs=41.5

Q ss_pred             CCCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          254 IPADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      +.+++.||||++.+.|||++||||+ ||+.|+.+|     ..||.|+.++..
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            3567899999999999999999999 999999988     679999988754

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.80  E-value=3.3e-06  Score=68.77  Aligned_cols=45  Identities=22%  Similarity=0.418  Sum_probs=40.0

Q ss_pred             CCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          255 PADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      .++..||||++.+.|||++||||. ||+.|+.+|.     .||.|++++..
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            455689999999999999999999 9999999874     89999998765

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.77  E-value=4.1e-06  Score=74.87  Aligned_cols=119  Identities=19%  Similarity=0.187  Sum_probs=91.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .++.++..|++.++.++..|+..|..+..            ..++.|+.+|.++++.++..|+.+|.++..         
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------   71 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---------   71 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence            47778889998888888888777665432            136899999999999999999999988753         


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                       ..+++.|+..|++.++.++..|+++|..+.          ...+++.|+.++++.++.++..|+.+|.++
T Consensus        72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence             235889999999999999999999999875          234688999999988999999999998754

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.77  E-value=0.0016  Score=66.78  Aligned_cols=178  Identities=13%  Similarity=0.091  Sum_probs=133.1

Q ss_pred             HHHHhcCcHHHHHHHHHHHHH-ccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH-hch
Q 006669          441 VQILRAGSMEARENAAATLFS-LSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR-AGI  518 (636)
Q Consensus       441 v~lL~~~~~e~~~~Aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~  518 (636)
                      ++.|.+++.+.+..+..-|.. ++.+.+....++..+++..|+.+..+++......+++|+.+|..+..+-.-++. ...
T Consensus       124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f  203 (339)
T 3dad_A          124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT  203 (339)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence            455666776777777777776 566778888999999999999999999999999999999999888777666664 678


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHhc--------C--cHHHHHHHHc---CCCHHHHHHHHHHHHH
Q 006669          519 ISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVKA--------S--TIPVLIVLLR---TGLPRNKENAAAILLS  584 (636)
Q Consensus       519 v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~--------g--~i~~Lv~lL~---~~s~~~ke~A~~~L~~  584 (636)
                      |..++.++.+.+..++..|+++|..++.+.+ +...+.++        |  ....|+.+|.   +++...+.+|...+-.
T Consensus       204 I~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~  283 (339)
T 3dad_A          204 IQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK  283 (339)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            9999999988889999999999999988554 33322221        1  3789999997   5678999999988876


Q ss_pred             hhccCh--H----HHHHHHHcCChHHHHHhhhc-CC-HHHHH
Q 006669          585 LCKRDT--E----NLACISRLGAVIPLTELTKS-GT-ERAKR  618 (636)
Q Consensus       585 L~~~~~--~----~~~~i~~~G~i~~L~~Ll~~-g~-~~~k~  618 (636)
                      +..+.+  +    ....+.+.|.-..+...+.. |+ +..++
T Consensus       284 lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          284 TLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            655433  3    22234456666677776665 33 34443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.76  E-value=0.0012  Score=71.02  Aligned_cols=230  Identities=14%  Similarity=0.157  Sum_probs=159.9

Q ss_pred             HHHHhhcC-CChHHHHHHHHHHHHhhhCcchHHHHHHhC--ChHHHHHHHhc---------------C--cHHHHHHHHH
Q 006669          398 VLVNLLTT-DDVMTQEHAVTAILNLSIYENNKGLIMLAG--AIPSIVQILRA---------------G--SMEARENAAA  457 (636)
Q Consensus       398 ~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G--~I~~Lv~lL~~---------------~--~~e~~~~Aa~  457 (636)
                      .++..|+. .+...+.-++.+|-.|...+..|..+.+.+  .+++++.+++.               +  ....+.+++-
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            45566665 345567788999999998889998887643  46777665542               1  3567899999


Q ss_pred             HHHHccCCCchhHHHHhcCch--HHHHhhhccC-CHHHHHHHHHHHHhhhhccc-hH----H-HHHHhchHHHHHHHhcC
Q 006669          458 TLFSLSLLDENKIIIGASGAI--PALVDLLQNG-STRGRKDAATALFNLCIYMG-NK----G-RAVRAGIISALLKMLTD  528 (636)
Q Consensus       458 ~L~~Ls~~~~~~~~i~~~g~i--~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~~-n~----~-~lv~~g~v~~Lv~lL~~  528 (636)
                      +++-||+.++....+...+..  +.|+++++.. ..++.+-++.+|.||..... +.    . .++..++ +.+++.|..
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            999999998877777666543  6777778765 47888899999999976541 21    2 2233445 445566643


Q ss_pred             ---CCHHHHHHHHHHHHHH-------hcC---------------hhhHH-H--------HHhc--CcHHHHHHHHcC---
Q 006669          529 ---SRNCMVDEALTILSVL-------ASN---------------PEAKI-A--------IVKA--STIPVLIVLLRT---  569 (636)
Q Consensus       529 ---~~~~~~~~Al~~L~~L-------a~~---------------~~~~~-~--------i~~~--g~i~~Lv~lL~~---  569 (636)
                         .++++.+.--.+...|       ++.               |..+. .        +.+.  ..+..|+++|.+   
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence               5666665443333222       211               11111 1        2122  257889999974   


Q ss_pred             -------CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          570 -------GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       570 -------~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                             .++.+..-|+.=|..++++.|..+..+-+.|+-..++.|+.+.++.+|..|..++..+-
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                   24666777888889999999999988889999999999999999999999998887664

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00011  Score=73.50  Aligned_cols=188  Identities=5%  Similarity=0.104  Sum_probs=131.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHh-cCCHHHHHHhh-cCCChHHHHHHHHHHHHhhhCc---chH-H
Q 006669          357 LVRKLSSRSVEERRAAVAEIRS-LSKRSTDNRIIIAD-AGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYE---NNK-G  429 (636)
Q Consensus       357 Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~e-~g~i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~~~---~~k-~  429 (636)
                      +.+.+.+.++..|..|+..|.. +..+.+.......+ ...+..|...+ ...+..++..|+.+|..|+..-   ... .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4567789999999999999999 87543221100001 12356777788 5778889999999999998621   211 2


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~  508 (636)
                      ..  .-.++.+++.+++....++..+..+|..+...- .....-.-...++.|+..|++.++.+|..++.+|..+....+
T Consensus       101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            11  225788888888888888888888877775421 111000011366788888888899999999999999876543


Q ss_pred             hH-HH---HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          509 NK-GR---AVRAGIISALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       509 n~-~~---lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                      .. ..   .+...++|.|.+++.+.+..+++.|..+|..++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            21 22   2224699999999999999999999999988876

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.66  E-value=2.7e-05  Score=67.05  Aligned_cols=47  Identities=19%  Similarity=0.370  Sum_probs=39.8

Q ss_pred             CcccCccchhhccCC------------------eecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          256 ADFLCPISLELMRDP------------------VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       256 ~~f~CPis~~~m~dP------------------v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      ++-.|+||++.|.+|                  +..+|||.|.+.||.+|+.. +.+||.|++.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            345799999999877                  44899999999999999985 689999998753

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.62  E-value=0.001  Score=68.24  Aligned_cols=148  Identities=16%  Similarity=0.106  Sum_probs=121.0

Q ss_pred             HHHhhhccCCHHHHHHHHHHHHh-hhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh-c
Q 006669          480 ALVDLLQNGSTRGRKDAATALFN-LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK-A  557 (636)
Q Consensus       480 ~Lv~LL~~~~~~~k~~A~~aL~n-L~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~-~  557 (636)
                      .+++-|.+++.+.++.++.-|.. +.....-...++..+++..|+.+....+..+..+++.+|.+|..+.+|...+++ .
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~  201 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS  201 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence            34455667788889988888888 555567789999999999999999889999999999999999999999988875 4


Q ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH--------cC--ChHHHHHhhh---cCCHHHHHHHHHHH
Q 006669          558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR--------LG--AVIPLTELTK---SGTERAKRKATSLL  624 (636)
Q Consensus       558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~--------~G--~i~~L~~Ll~---~g~~~~k~kA~~lL  624 (636)
                      .+|..+..++.+....+...|.++|..+|..++.+...+.+        .|  -.+.|+.+++   +++...+.+|..++
T Consensus       202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI  281 (339)
T 3dad_A          202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI  281 (339)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            68999999998877888999999999999887644443322        12  3778999997   67889999988887


Q ss_pred             HHh
Q 006669          625 EHL  627 (636)
Q Consensus       625 ~~l  627 (636)
                      .-+
T Consensus       282 N~l  284 (339)
T 3dad_A          282 NKT  284 (339)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.54  E-value=6.2e-05  Score=59.27  Aligned_cols=45  Identities=13%  Similarity=0.166  Sum_probs=39.8

Q ss_pred             CCcccCccchhhccCCeecCCCch-hhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          255 PADFLCPISLELMRDPVIVATGQT-YERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      .++..|+||++-..|||++||||. ||..|++.     ...||.|++++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            457889999999999999999999 99999984     4789999988754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.53  E-value=0.0089  Score=70.27  Aligned_cols=262  Identities=16%  Similarity=0.184  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh---hHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh--Cc
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD---NRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI--YE  425 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~---~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~--~~  425 (636)
                      .+.+..|.+.++.....  +.|+..+..++.....   .-..++  +.+|.++..+......++..|-.++..+..  ++
T Consensus        53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~  128 (986)
T 2iw3_A           53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP  128 (986)
T ss_dssp             HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG
T ss_pred             hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH
Confidence            35677777777664333  7888888888854321   112222  567888888877778888888878777765  33


Q ss_pred             chHHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHh
Q 006669          426 NNKGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQNGSTRGRKDAATALFN  502 (636)
Q Consensus       426 ~~k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~n  502 (636)
                      ...     ...+|.|+..|.++ -+..+..|+.++..|+...  ..+++..  ..||.+-+.+-+..+++++.|..++..
T Consensus       129 ~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~  201 (986)
T 2iw3_A          129 VAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTK  201 (986)
T ss_dssp             GGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHH
Confidence            222     23578999988776 5999999999999998654  4555544  788999999988899999999999999


Q ss_pred             hhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 006669          503 LCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAIL  582 (636)
Q Consensus       503 L~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  582 (636)
                      +|..-+|+..   ...||.|++.+.+++.  +.+++..|..-..-.+.-.... +-.+|.|.+=|...+...+..++-++
T Consensus       202 ~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~  275 (986)
T 2iw3_A          202 ATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVII  275 (986)
T ss_dssp             HGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             HHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEE
Confidence            9877666543   3578999999987643  4455555543332222111110 01367777777777888899999999


Q ss_pred             HHhhc--cChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcc
Q 006669          583 LSLCK--RDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       583 ~~L~~--~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~  630 (636)
                      -|||.  ++|.....++ ...+|-|...... .+|.+|+.|..++..|.+.
T Consensus       276 ~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          276 DNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            99997  3454444443 4577888776655 6899999999999988653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.40  E-value=0.0085  Score=64.39  Aligned_cols=229  Identities=14%  Similarity=0.153  Sum_probs=150.0

Q ss_pred             HHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcC--CHHHHHHhhcC---------------C--ChHHHHHHHH
Q 006669          357 LVRKLSSR-SVEERRAAVAEIRSLSKRSTDNRIIIADAG--AIPVLVNLLTT---------------D--DVMTQEHAVT  416 (636)
Q Consensus       357 Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~e~g--~i~~Lv~lL~s---------------~--d~~~~e~Av~  416 (636)
                      ++..|.+. +.+.+.-++..|..|.+ .++.|..+.+.+  .++.++.+++.               +  ...++.+++-
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            44455542 34556678888888886 578888887653  36777654431               1  2456899999


Q ss_pred             HHHHhhhCcchHHHHHHhCCh--HHHHHHHhcC-cHHHHHHHHHHHHHccCCC--chh---H-HHHhcCchHHHHhhhcc
Q 006669          417 AILNLSIYENNKGLIMLAGAI--PSIVQILRAG-SMEARENAAATLFSLSLLD--ENK---I-IIGASGAIPALVDLLQN  487 (636)
Q Consensus       417 aL~nLs~~~~~k~~I~~~G~I--~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~--~~~---~-~i~~~g~i~~Lv~LL~~  487 (636)
                      +++-|+.+++....+...+..  +.|+.+++.. -..+..-+.++|.|+....  +..   . .+...++ .++++.|..
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            999999988777777666533  5677778765 4788889999999997764  112   2 2222344 456666654


Q ss_pred             C---CHHHHHHHHH-------HHHhhhhccc------------------------hHHHHHH--hchHHHHHHHhcC---
Q 006669          488 G---STRGRKDAAT-------ALFNLCIYMG------------------------NKGRAVR--AGIISALLKMLTD---  528 (636)
Q Consensus       488 ~---~~~~k~~A~~-------aL~nL~~~~~------------------------n~~~lv~--~g~v~~Lv~lL~~---  528 (636)
                      .   +++...+.-.       .+..|+..++                        |-.++-+  ..++..|+++|.+   
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence            3   4444333221       1122222211                        1122222  1278889999963   


Q ss_pred             -------CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          529 -------SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       529 -------~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                             .++.+..-|+.=+..++. +|.+|..+-+.|+=..+.++|.+.++.+|-+|..++-.+..
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                   245566667777777777 78899888888988888999999999999999988876543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.40  E-value=0.085  Score=49.26  Aligned_cols=211  Identities=15%  Similarity=0.189  Sum_probs=145.1

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHh-cCcHHHHHHHHHHHHHccCCCchhHH
Q 006669          394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILR-AGSMEARENAAATLFSLSLLDENKII  471 (636)
Q Consensus       394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~  471 (636)
                      ..+..++.+|..+-..+|.||+.++.+++. .++....+.     ..|+-+++ +......+.-+.+++-++....   .
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e  103 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E  103 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence            356788999986668899999999999987 555444332     33444444 4566666667777777764322   1


Q ss_pred             HHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Q 006669          472 IGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK  551 (636)
Q Consensus       472 i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~  551 (636)
                      +++ +.+|.+..=.+-|+++.+.+...+|..+...++.-.    .+++.-+..|+.+++..-+-.|+..+..+..   +.
T Consensus       104 ~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltskd~~Dkl~aLnFi~alGe---n~  175 (253)
T 2db0_A          104 LVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSKNREDKLTALNFIEAMGE---NS  175 (253)
T ss_dssp             HHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT---TT
T ss_pred             HHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc---cC
Confidence            111 355666666677899999999999999876554322    3456678889988776555555555554443   33


Q ss_pred             HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      ..-+ .-.+|.|..+|...+.-++..|+.+|.+++..++..+..+..      -++-+.+.++-++.+....|..+
T Consensus       176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHH
Confidence            2222 257899999999999999999999999999998886554432      23334567777887777776654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.39  E-value=0.00011  Score=59.71  Aligned_cols=51  Identities=16%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             CCCcccCccchhhc--cCCeecCCC-----chhhhHHHHHHHcCC-CCCCCCCCccccc
Q 006669          254 IPADFLCPISLELM--RDPVIVATG-----QTYERSYIQRWIDCG-NVTCPKTQQKLEH  304 (636)
Q Consensus       254 ~p~~f~CPis~~~m--~dPv~~~~G-----~t~~r~~I~~w~~~~-~~~cP~~~~~l~~  304 (636)
                      ..++..|+||++-+  .+|++.||+     |.|-+.||++|+... ..+||+|+..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            34567899999776  579999996     999999999999754 4689999998754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.28  E-value=0.019  Score=66.86  Aligned_cols=234  Identities=17%  Similarity=0.112  Sum_probs=153.5

Q ss_pred             HHHHHHHHhcCCC--------HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC
Q 006669          353 AIEALVRKLSSRS--------VEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY  424 (636)
Q Consensus       353 ~i~~Lv~~L~s~~--------~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~  424 (636)
                      .+..|...|.+.+        ..++..|+-.|....-++.  +.     .+++.|..+|..++....+.|+.+|..+-..
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vG  502 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLG  502 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence            4555555565433        3455555555555432221  11     1356788888777766666666666655332


Q ss_pred             cchHHHHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhcc-CCHHHHHHHHHHHHh
Q 006669          425 ENNKGLIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQN-GSTRGRKDAATALFN  502 (636)
Q Consensus       425 ~~~k~~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~-~~~~~k~~A~~aL~n  502 (636)
                      ..|..      ++..|+..+.+ .+..++..++-.|..+...        +...++.+++.|.. .++-++..++.++..
T Consensus       503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~algl  568 (963)
T 4ady_A          503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG--------RQELADDLITKMLASDESLLRYGGAFTIAL  568 (963)
T ss_dssp             CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            22222      24556665543 4667888888888776543        33577888888874 577788877777776


Q ss_pred             hhhccchHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHH-cCCCHHHHHHHHH
Q 006669          503 LCIYMGNKGRAVRAGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL-RTGLPRNKENAAA  580 (636)
Q Consensus       503 L~~~~~n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~ke~A~~  580 (636)
                      -+...+|.      .+|+.|++.+ .+.+..++..|+..|+.++...+        ..++.++.+| ++.++.+|..|+.
T Consensus       569 AyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal  634 (963)
T 4ady_A          569 AYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF  634 (963)
T ss_dssp             HTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred             HhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence            55555553      2556566665 45678899999999998876432        4577787755 5678999999999


Q ss_pred             HHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          581 ILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       581 ~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      +|..+|.+++.       ..+++.|..+..+.++.+++.|...|..+-
T Consensus       635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            99999986652       124567777888889999999998888774

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.15  E-value=0.0039  Score=65.16  Aligned_cols=217  Identities=10%  Similarity=0.081  Sum_probs=132.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      -++..|.+.+.++++..+-.|++.|..+...+  --.     ...+.+.+.|.+.++.++..|+-+...|....  .+.+
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v  174 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV  174 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH
Confidence            35788999999999999999999999987532  222     23466778888999999999999988887532  2222


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccC---CHHHHHHHHHHHHhhhhccc
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNG---STRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~---~~~~k~~A~~aL~nL~~~~~  508 (636)
                        .+.++.+-+++.+.++-++.+|..+|..+...+..        ++..|+.-+..+   ++-++..-+..+..++..++
T Consensus       175 --~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~  244 (355)
T 3tjz_B          175 --KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED  244 (355)
T ss_dssp             --HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred             --HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence              36899999999999999999999999999765421        344455555443   34444444555545544321


Q ss_pred             hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669          509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR  588 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  588 (636)
                      .   -.....++.+...|++.++.++-+|+.++..+...+..   .. ..++..|..++.+.++..|=.|+..|..+...
T Consensus       245 ~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~  317 (355)
T 3tjz_B          245 G---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK  317 (355)
T ss_dssp             ---------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred             h---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            0   11234566677778888999999999999888663322   11 23456666778788888888888888888876


Q ss_pred             ChHHHH
Q 006669          589 DTENLA  594 (636)
Q Consensus       589 ~~~~~~  594 (636)
                      .|....
T Consensus       318 ~P~~v~  323 (355)
T 3tjz_B          318 HPSAVT  323 (355)
T ss_dssp             ------
T ss_pred             CcHHHH
Confidence            665443

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.13  E-value=6.8e-05  Score=65.57  Aligned_cols=45  Identities=22%  Similarity=0.449  Sum_probs=0.0

Q ss_pred             ccCccchhhccCCee------------------cCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          258 FLCPISLELMRDPVI------------------VATGQTYERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       258 f~CPis~~~m~dPv~------------------~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      -.|+||++.|.+|.+                  .+|||.|.+.||.+|+.. +.+||.|++++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            479999999987532                  589999999999999985 678999998653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.05  E-value=0.0073  Score=70.99  Aligned_cols=261  Identities=16%  Similarity=0.144  Sum_probs=170.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch---HH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN---KG  429 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~---k~  429 (636)
                      .+..+++.++..+...+..|+..+..+...+...+  ....+.+..|.+.+......  +.|+.++..|+.....   .+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e   90 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE   90 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence            45557777776666667778888887765332111  11135667777777643333  9999999999853211   12


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhhhcc
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLCIYM  507 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~~~~  507 (636)
                      ... -+.++.++....+....++..|..++..+... +.+..    ...+|.|+..|.++ .+..|..|+.++..|+...
T Consensus        91 ~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~  165 (986)
T 2iw3_A           91 PYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA  165 (986)
T ss_dssp             HHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred             cch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence            111 25677777777666677777766666655321 22221    34678999988765 6899999999999998655


Q ss_pred             chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      +..-...=..+||.+.+.+-+..+++...|..++..+|..-+|+..   ...||.|++.+...+.  ...++..|..-+.
T Consensus       166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tf  240 (986)
T 2iw3_A          166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTF  240 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCC
T ss_pred             HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCee
Confidence            3222222256999999999999999999999999999986555432   3679999999977643  3344555543332


Q ss_pred             cCh--HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          588 RDT--ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       588 ~~~--~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      -..  .-.-.+    .+|.|..=+...+...+||++-+..+|++..
T Consensus       241 v~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv  282 (986)
T 2iw3_A          241 VAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLV  282 (986)
T ss_dssp             CSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred             EeeecchhHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence            111  111111    2556666667778889999999999999864

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.04  E-value=0.21  Score=46.64  Aligned_cols=213  Identities=14%  Similarity=0.179  Sum_probs=146.3

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhh-Ccch
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSI-YENN  427 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~-~~~~  427 (636)
                      +...+..++..|...-+.+|..|+..+..+++.-++...-+     +..|+-+++ ++..........++..++. .|+.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            55678899999999999999999999999998877665443     355666664 4555554556677777775 3332


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      -.     +.+|.+..=.+-|++.++.+...+|..+...+.  ..+  .+.+..+..++.+.+..-+..|+..+..|   .
T Consensus       105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~--~~v~rdi~smltskd~~Dkl~aLnFi~al---G  172 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLM--ASIVRDFMSMLSSKNREDKLTALNFIEAM---G  172 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHH--HHHHHHHHHHTSCSSHHHHHHHHHHHHTC---C
T ss_pred             HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHH---h
Confidence            11     234555555567899999999999998865432  111  14566777888877765565555555444   5


Q ss_pred             chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          508 GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       508 ~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      +|.-+-+. -.+|.|..+|.+.+.-++..|+.+|.+++. ++.-|..+.      .-++-+...|.-++......|..+.
T Consensus       173 en~~~yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          173 ENSFKYVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             TTTHHHHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             ccCccccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            56555553 478999999999999999999999999998 455444432      3344455666666666666665443

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.91  E-value=0.024  Score=59.13  Aligned_cols=243  Identities=13%  Similarity=0.035  Sum_probs=149.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML  433 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~  433 (636)
                      ....++.+.+.+...++-.--.+..+++..++.   |   =++..|.+=+.++++-++-.|+.+|.++...+- -.    
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~~----  138 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-LQ----  138 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-HH----
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-HH----
Confidence            445677888999888887777777888763331   1   246778888889999999999999998865332 11    


Q ss_pred             hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHH
Q 006669          434 AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA  513 (636)
Q Consensus       434 ~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~l  513 (636)
                       ...+.+...|.+.++-++..|+-+...|......  . . .+++..+-+++.+.++-+..+|+.+|+.+...+.     
T Consensus       139 -~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-----  208 (355)
T 3tjz_B          139 -AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--V-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-----  208 (355)
T ss_dssp             -HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--H-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-----
T ss_pred             -HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--H-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-----
Confidence             1345566777888999999999999988655432  2 2 2689999999999999999999999999976441     


Q ss_pred             HHhchHHHHHHHhcCC---CHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669          514 VRAGIISALLKMLTDS---RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       514 v~~g~v~~Lv~lL~~~---~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                         .++..|+..+...   ++-..-.-+.++..++...+.   -.....++.|...|++.++.+.=.|+.++..+...+.
T Consensus       209 ---~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~  282 (355)
T 3tjz_B          209 ---LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA  282 (355)
T ss_dssp             ---HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC------
T ss_pred             ---HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH
Confidence               1445555555432   222222222333222222100   0123456667777788888898889999987754222


Q ss_pred             HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          591 ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       591 ~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      .    . ...++..|..++.+.++.+|=-|...|..+.
T Consensus       283 ~----~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~  315 (355)
T 3tjz_B          283 K----E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVA  315 (355)
T ss_dssp             ----------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred             H----H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            1    1 1345677888888888888877766555543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.096  Score=52.43  Aligned_cols=185  Identities=14%  Similarity=0.179  Sum_probs=122.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhhH--HH-HHhcC-CHHHHHHhhcCCChHHHHHHHHHHHHhhhCc----chH
Q 006669          357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNR--II-IADAG-AIPVLVNLLTTDDVMTQEHAVTAILNLSIYE----NNK  428 (636)
Q Consensus       357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r--~~-i~e~g-~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~----~~k  428 (636)
                      |-+.|.+.++..|.+|+..|..+....+...  .. +...+ ..+.+-..+...+..++..++.+|..+...-    ..+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            6689999999999999999988765432111  11 11122 3455667787788899999999988776521    112


Q ss_pred             HH--HHHhCChHHHHHH-HhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669          429 GL--IMLAGAIPSIVQI-LRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI  505 (636)
Q Consensus       429 ~~--I~~~G~I~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~  505 (636)
                      ..  ..-...++.|++- |.++...++..|..++..+........     ..++.++..+.+.++.++..++..|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            21  1224467777764 666778888888888877653322111     134566677788899999999999988754


Q ss_pred             ccch----HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006669          506 YMGN----KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN  547 (636)
Q Consensus       506 ~~~n----~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  547 (636)
                      ..+.    -...+ ..+++.+..++.+.+..+++.|..++..+-..
T Consensus       169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            3211    11112 23566778888899999999999999887664

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.31  E-value=0.33  Score=56.66  Aligned_cols=237  Identities=16%  Similarity=0.060  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-cCCChHHHHHHHHHHHHhhhCcchHH
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL-~s~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      ...++.|...|...+...+..|+..|..+-.+.. |..      ++..|+..+ ...+..++..++..|..+...     
T Consensus       471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-----  538 (963)
T 4ady_A          471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG-----  538 (963)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence            3456777777776666555566666665532221 111      234555544 345667777777777766542     


Q ss_pred             HHHHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc-cCCHHHHHHHHHHHHhhhhcc
Q 006669          430 LIMLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ-NGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~-~~~~~~k~~A~~aL~nL~~~~  507 (636)
                         +...++.+++.|.. .++.+|..++.++.--.....+      ..+|+.|++.+. +.+..++..|+.+|..+....
T Consensus       539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~  609 (963)
T 4ady_A          539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD  609 (963)
T ss_dssp             ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred             ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence               23457788888875 4677777776666533222222      135566777665 446788999999998876554


Q ss_pred             chHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          508 GNKGRAVRAGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       508 ~n~~~lv~~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      +        ..++.++++| .+.++.++..|..+|..++......      .++..|..+.+...+.++.+|+.+|..+.
T Consensus       610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            3        3566777755 4588999999999999998643322      23556777788888999999999999887


Q ss_pred             ccChHH----HHHHHHcCChHHHHHhhhc--CCHHHHHHHHHHHHHh
Q 006669          587 KRDTEN----LACISRLGAVIPLTELTKS--GTERAKRKATSLLEHL  627 (636)
Q Consensus       587 ~~~~~~----~~~i~~~G~i~~L~~Ll~~--g~~~~k~kA~~lL~~l  627 (636)
                      ....+.    ...+     ...|.....+  .++.++-.|.-++-.+
T Consensus       676 ~gtnna~~~rva~~-----l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          676 IQQTEKLNPQVADI-----NKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             TTCCTTTCTTHHHH-----HHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             cCCccccchHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            654332    2222     3335555544  3556666665555544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.21  E-value=0.39  Score=47.13  Aligned_cols=227  Identities=17%  Similarity=0.172  Sum_probs=150.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhh-------cCCC-----hHHHHHHHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLL-------TTDD-----VMTQEHAVTAIL  419 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL-------~s~d-----~~~~e~Av~aL~  419 (636)
                      .+..++..|.++  +.++.|+.+|..--..-++---.+=. .|.+..|+.=.       +.+.     ..-.-+|+..|-
T Consensus         4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ   81 (268)
T 2fv2_A            4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ   81 (268)
T ss_dssp             HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence            355666666644  45777777766543322333333333 36666664422       1111     122356677777


Q ss_pred             HhhhCcchHHHHHHhCChHHHHHHHhcCc-----HHHHHHHHHHHHHccCCCc--hhHHHHhcCchHHHHhhhccCCHHH
Q 006669          420 NLSIYENNKGLIMLAGAIPSIVQILRAGS-----MEARENAAATLFSLSLLDE--NKIIIGASGAIPALVDLLQNGSTRG  492 (636)
Q Consensus       420 nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~LL~~~~~~~  492 (636)
                      -++.+++.+..+.++...--|...|+..+     .-.|..+.++++.|...++  .-..+.+.+.+|..+..+..|+.-.
T Consensus        82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS  161 (268)
T 2fv2_A           82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS  161 (268)
T ss_dssp             HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence            78889999999999987777777887542     4578899999999976544  3344556799999999999999999


Q ss_pred             HHHHHHHHHhhhhccchHHHHHH--------hchHHHHHHHh-cCCCHHHHHHHHHHHHHHhcChhhHHHHHhc------
Q 006669          493 RKDAATALFNLCIYMGNKGRAVR--------AGIISALLKML-TDSRNCMVDEALTILSVLASNPEAKIAIVKA------  557 (636)
Q Consensus       493 k~~A~~aL~nL~~~~~n~~~lv~--------~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~------  557 (636)
                      |.-|...+..+..++.+-..+..        ..++..+|.-+ .+++..+....+.+-..|+.++.+++++...      
T Consensus       162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr  241 (268)
T 2fv2_A          162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK  241 (268)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence            99999999988776655443332        22333334333 4589999999999999999999999887641      


Q ss_pred             -CcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          558 -STIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       558 -g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                       |.+..   ++ .+++.+|..-...+.|+
T Consensus       242 d~tf~~---~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          242 DTTFAQ---VL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             SSTTHH---HH-TSCHHHHHHHHHHHHHS
T ss_pred             ChHHHH---HH-hcCHHHHHHHHHHHHhc
Confidence             22222   22 24566666655555554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.089  Score=52.66  Aligned_cols=188  Identities=15%  Similarity=0.148  Sum_probs=122.8

Q ss_pred             hHHHHHHHhcCcHHHHHHHHHHHHHccCCCc---hhHHHHh-c-CchHHHHhhhccCCHHHHHHHHHHHHhhhhccc---
Q 006669          437 IPSIVQILRAGSMEARENAAATLFSLSLLDE---NKIIIGA-S-GAIPALVDLLQNGSTRGRKDAATALFNLCIYMG---  508 (636)
Q Consensus       437 I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~~~~i~~-~-g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~---  508 (636)
                      +| +-+-|.+.++..|..|...|..+.....   ....... . ...+.+-..+.+.+..+...++.+|..++....   
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            44 5567888899999999988877643211   1111111 1 344556667788899999999998887764321   


Q ss_pred             -hHH--HHHHhchHHHHHHH-hcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669          509 -NKG--RAVRAGIISALLKM-LTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS  584 (636)
Q Consensus       509 -n~~--~lv~~g~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  584 (636)
                       .+.  ...-..+++.|++- +.+....+++.|..++..++........     ++..++..+.+.+|+++..++..|..
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~  165 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE  165 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence             122  22335678888876 7788889999999988877653322222     23455566778899999999888877


Q ss_pred             hhcc-ChHH--HHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          585 LCKR-DTEN--LACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       585 L~~~-~~~~--~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      +... +...  ....+ ..+++.+..++.+.++.+|..|..++-.+.++.
T Consensus       166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            6542 1111  11111 124567788889999999999999998887753

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.85  E-value=0.33  Score=49.67  Aligned_cols=197  Identities=14%  Similarity=0.148  Sum_probs=147.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhc-CCChHHHHHHHHHHHHhhhCcchHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA--GAIPVLVNLLT-TDDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~--g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      .+..|+..|..-+.+.+..+......+-+.....+-..++.  .--..|..++. .+++++--++-..|+....++....
T Consensus        79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~  158 (341)
T 1upk_A           79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK  158 (341)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence            46667777778888999999888888877655443222211  11122222222 2456667778888999888999888


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hh-HHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NK-IIIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCI  505 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~-~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~  505 (636)
                      .|...+.+-.+.+.+..++-++...|..++..|-..+. -. ..+...  ..+...-.||.+++.-++..++..|..|..
T Consensus       159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLl  238 (341)
T 1upk_A          159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLL  238 (341)
T ss_dssp             HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence            88888888899999999999999999999998754433 12 222222  456677789999999999999999999999


Q ss_pred             ccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669          506 YMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPE  549 (636)
Q Consensus       506 ~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~  549 (636)
                      ...|...+..    ..-+..++.+|++.+..++-+|..+......+|.
T Consensus       239 dr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~  286 (341)
T 1upk_A          239 DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  286 (341)
T ss_dssp             SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             CchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence            9888766654    4578889999999999999999999998887654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=95.35  E-value=0.033  Score=60.48  Aligned_cols=243  Identities=13%  Similarity=0.132  Sum_probs=150.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhhc-------CCC---hHHHHHHHHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA--GAIPVLVNLLT-------TDD---VMTQEHAVTAILN  420 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~--g~i~~Lv~lL~-------s~d---~~~~e~Av~aL~n  420 (636)
                      ..+.|+..|-++.+++|--|+-.||.+.+............  ...-.|+-+|.       ..|   +.++|.|+.+|..
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            56788899999999999999999999876543110000111  11222333231       122   5789999999988


Q ss_pred             hhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH-hcCchHHHHhhhccCCHHHHHHHHHH
Q 006669          421 LSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG-ASGAIPALVDLLQNGSTRGRKDAATA  499 (636)
Q Consensus       421 Ls~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~LL~~~~~~~k~~A~~a  499 (636)
                      + .+-...     ..++..++..+....++++..+.-.|.++   .+   .+. -.+.++.++.-|.+.+.+++..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~D---LL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KE---FVEDKDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GG---GCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HH---HHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence            8 632111     23444445445677899999999999998   11   111 13677888888888899999999999


Q ss_pred             HHhhhhccchHHHHHHhchHHHHHHHhcCC--CHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHH
Q 006669          500 LFNLCIYMGNKGRAVRAGIISALLKMLTDS--RNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKEN  577 (636)
Q Consensus       500 L~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~--~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~  577 (636)
                      |.-++ .++...     .++..+-+.|.+-  =..........|+.|++.+..  +-.....||.|.-++++.-..+|..
T Consensus       323 LiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A  394 (800)
T 3oc3_A          323 LCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS  394 (800)
T ss_dssp             HTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred             hhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence            99988 222222     2344445555431  112233456677777776632  1112367899999999999999999


Q ss_pred             HHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 006669          578 AAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLE  625 (636)
Q Consensus       578 A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~  625 (636)
                      ++.+|..+.  ++.....+        ...++-..++.+++.+..+-+
T Consensus       395 VL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          395 ILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence            999998776  22221111        113344556666666665553

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.27  E-value=0.51  Score=48.02  Aligned_cols=186  Identities=11%  Similarity=0.034  Sum_probs=109.1

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHH-HHHh----cCcHHHHHHHHHHHHHccCCCchhH
Q 006669          396 IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIV-QILR----AGSMEARENAAATLFSLSLLDENKI  470 (636)
Q Consensus       396 i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv-~lL~----~~~~e~~~~Aa~~L~~Ls~~~~~~~  470 (636)
                      +..+.+++ +-..+.+--++.+++-+..++.....+.+.+.-..++ .++.    .+.+..+.-+++++.|+-.....+.
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~  183 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK  183 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence            34455555 3334445556666665555555444444322223333 2222    2346668889999999988887777


Q ss_pred             HHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhhhhccch-HHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 006669          471 IIGAS--GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGN-KGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLAS  546 (636)
Q Consensus       471 ~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n-~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~  546 (636)
                      .+...  ..++.+...+...+...+..+++.++|++...-+ +..-....++..+..++.. .+.+....++.+|.+|..
T Consensus       184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~  263 (304)
T 3ebb_A          184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS  263 (304)
T ss_dssp             HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence            76653  4555555555556888999999999999864211 1000011244445555543 678899999999999997


Q ss_pred             ChhhHHHHHhcCcHHHHHH-HHcC-CCHHHHHHHHHHH
Q 006669          547 NPEAKIAIVKASTIPVLIV-LLRT-GLPRNKENAAAIL  582 (636)
Q Consensus       547 ~~~~~~~i~~~g~i~~Lv~-lL~~-~s~~~ke~A~~~L  582 (636)
                      .+.....+.+.-.+...+. +... ..+++.+.|..+|
T Consensus       264 ~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~  301 (304)
T 3ebb_A          264 DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL  301 (304)
T ss_dssp             TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred             CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            6554445554433444343 3333 3466777665554

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.07  E-value=0.018  Score=45.76  Aligned_cols=47  Identities=15%  Similarity=0.342  Sum_probs=36.7

Q ss_pred             ccCccchhhccCCee-cCCCchhhhHHHHHHHcCC-CCCCCCCCccccc
Q 006669          258 FLCPISLELMRDPVI-VATGQTYERSYIQRWIDCG-NVTCPKTQQKLEH  304 (636)
Q Consensus       258 f~CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~-~~~cP~~~~~l~~  304 (636)
                      -.|+||.+++..=+. ..|||.|=..||.+||... ..+||.|+.....
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            469999888853222 3799999999999999753 4789999987653

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=94.98  E-value=0.014  Score=44.38  Aligned_cols=47  Identities=21%  Similarity=0.312  Sum_probs=38.3

Q ss_pred             cccCccchhhccCCeecCCCc-----hhhhHHHHHHHcC-CCCCCCCCCcccc
Q 006669          257 DFLCPISLELMRDPVIVATGQ-----TYERSYIQRWIDC-GNVTCPKTQQKLE  303 (636)
Q Consensus       257 ~f~CPis~~~m~dPv~~~~G~-----t~~r~~I~~w~~~-~~~~cP~~~~~l~  303 (636)
                      .-.|.||++-..+|.+.||..     .|=+.|+++|++. ++.+||+|+.++.
T Consensus         6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            346999988878888889643     6889999999974 6789999998764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=94.95  E-value=0.49  Score=47.10  Aligned_cols=178  Identities=12%  Similarity=0.124  Sum_probs=114.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcC-CHHHHHHhhcCCChHHHHHHHHHHHHhhh---CcchHHHHH
Q 006669          357 LVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAG-AIPVLVNLLTTDDVMTQEHAVTAILNLSI---YENNKGLIM  432 (636)
Q Consensus       357 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g-~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~---~~~~k~~I~  432 (636)
                      +...|-+.+...+.+|+..|......++  +.++...+ .++++.--+.+.++.+...++.+|..+..   ....+-.-.
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            4555666788888888888887654443  23332211 23333323335688888887777766532   111110011


Q ss_pred             H-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHH
Q 006669          433 L-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKG  511 (636)
Q Consensus       433 ~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~  511 (636)
                      + .-.+|.|++-+..+...+|..+-.++..+...      ..-...++.+++-+++.+.+.+..++..+.++-...+-. 
T Consensus       129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-  201 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-  201 (266)
T ss_dssp             HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence            1 23578888888776777888777777666421      111135566777778889999999999998875444332 


Q ss_pred             HHHHhchH---HHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 006669          512 RAVRAGII---SALLKMLTDSRNCMVDEALTILSVLAS  546 (636)
Q Consensus       512 ~lv~~g~v---~~Lv~lL~~~~~~~~~~Al~~L~~La~  546 (636)
                         ...++   +.+..++.+.+..+++.|+.++..+-.
T Consensus       202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence               24478   999999999999999999998875544

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=94.80  E-value=0.012  Score=48.90  Aligned_cols=51  Identities=8%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             cCccchhhccC-CeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669          259 LCPISLELMRD-PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP  309 (636)
Q Consensus       259 ~CPis~~~m~d-Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  309 (636)
                      .||+|.-.... ..++||+|.||..|+..|...+..+||.|+.+....+..+
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~   54 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT   54 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence            46766655543 4579999999999999999888899999999886644433

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.27  E-value=0.96  Score=53.45  Aligned_cols=251  Identities=10%  Similarity=0.105  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc------CCChHHHHHHHHHHHHhhhCcchHHHHHHh-----C
Q 006669          367 EERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT------TDDVMTQEHAVTAILNLSIYENNKGLIMLA-----G  435 (636)
Q Consensus       367 ~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~------s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~-----G  435 (636)
                      ..+..|...|..++....   ..+.. -.++.+-..+.      +.+...++.|+.++..++..-..+..-...     .
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            346677778888886543   11211 12333444454      456788899999999887421100000000     1


Q ss_pred             ChH----HHHHHHhcC---cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669          436 AIP----SIVQILRAG---SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       436 ~I~----~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~  508 (636)
                      ..+    .++..|.+.   .+.+|..|+++|...+..- ....  -...++.++..|.+.++.++..|+.||.+++...+
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            111    233335555   7899999999999987642 1111  12567888888888889999999999999986421


Q ss_pred             ---------hHHHHHH--hchHHHHHHHhcCCC---HH--HHHHHHHHHHHHhcCh--hhHHHHHhcCcHHHHHHHHc--
Q 006669          509 ---------NKGRAVR--AGIISALLKMLTDSR---NC--MVDEALTILSVLASNP--EAKIAIVKASTIPVLIVLLR--  568 (636)
Q Consensus       509 ---------n~~~lv~--~g~v~~Lv~lL~~~~---~~--~~~~Al~~L~~La~~~--~~~~~i~~~g~i~~Lv~lL~--  568 (636)
                               .+..+..  ..+++.|+.++....   ..  ..+.++.+|..++..-  +....+  ...++.|+..+.  
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHH
Confidence                     1332322  346667777776531   11  2245556665554311  111100  113444544443  


Q ss_pred             --C-CCHHHHHHHHHHHHHhhcc-ChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          569 --T-GLPRNKENAAAILLSLCKR-DTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       569 --~-~s~~~ke~A~~~L~~L~~~-~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                        + .++..+..+..+|..++.. +++....+ ....++.+..++..........+..++..+
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFV  668 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence              2 2456666677777777665 33333333 233567777777665444444455554444

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.85  E-value=1.1  Score=45.64  Aligned_cols=137  Identities=10%  Similarity=0.063  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHhhhhccchHHHHHH--hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh---hHHHHHhcCcHHH
Q 006669          488 GSTRGRKDAATALFNLCIYMGNKGRAVR--AGIISALLKMLTDSRNCMVDEALTILSVLASNPE---AKIAIVKASTIPV  562 (636)
Q Consensus       488 ~~~~~k~~A~~aL~nL~~~~~n~~~lv~--~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~---~~~~i~~~g~i~~  562 (636)
                      +++..+..+++++.|+..+...+..+..  ..++..+...+.+.+..++..+..++.|++...-   ..+..  ...+..
T Consensus       160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~  237 (304)
T 3ebb_A          160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSL  237 (304)
T ss_dssp             SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHH
T ss_pred             CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHH
Confidence            3566788899999999988888877765  3456666666666788888888999999987311   11111  113444


Q ss_pred             HHHHHcC-CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHH
Q 006669          563 LIVLLRT-GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEH  626 (636)
Q Consensus       563 Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~  626 (636)
                      +..++.. .+++..-.++.+|.+|...+++....+...|+...+-.+... ..+++.+.|..+|..
T Consensus       238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            4555553 456777778888888887776666666666766666666654 467788888777654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.38  E-value=1.4  Score=43.88  Aligned_cols=184  Identities=11%  Similarity=0.065  Sum_probs=114.4

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHH----HhcCcHHHHHHHHHHHHHccC---CCchhHH
Q 006669          399 LVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQI----LRAGSMEARENAAATLFSLSL---LDENKII  471 (636)
Q Consensus       399 Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~l----L~~~~~e~~~~Aa~~L~~Ls~---~~~~~~~  471 (636)
                      +...|.+.|...+..|+..|.....  .+...+..  .+..+++-    +.+.++.+...+..+|..+..   ..+++..
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence            4444555666666666666655432  12222211  22333332    235567777777766666521   1112211


Q ss_pred             HHh-cCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Q 006669          472 IGA-SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA  550 (636)
Q Consensus       472 i~~-~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~  550 (636)
                      -.+ .-.+|.|++-+.+....++..+-.++..++...      --..+++.+++-+.+.+...++.++..+..+-.....
T Consensus       127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~  200 (266)
T 2of3_A          127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI  200 (266)
T ss_dssp             HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence            111 247899999998888888888777776665311      1123667778888889999999999999888653221


Q ss_pred             HHHHHhcCcH---HHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHH
Q 006669          551 KIAIVKASTI---PVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACI  596 (636)
Q Consensus       551 ~~~i~~~g~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i  596 (636)
                      .    ...++   +.+..++.+.+..+|+.|..++..+....++.....
T Consensus       201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~  245 (266)
T 2of3_A          201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKA  245 (266)
T ss_dssp             G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            1    23467   999999999899999999999988776555444433

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.29  E-value=0.74  Score=45.21  Aligned_cols=145  Identities=17%  Similarity=0.127  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC-----hHHHHHHHHHHHHhhhC--cchHHHHHHhCChHHHHH
Q 006669          370 RAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD-----VMTQEHAVTAILNLSIY--ENNKGLIMLAGAIPSIVQ  442 (636)
Q Consensus       370 ~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d-----~~~~e~Av~aL~nLs~~--~~~k~~I~~~G~I~~Lv~  442 (636)
                      ..|+..+.-+|. +++.|..+.++...-.|-.+|...+     ...+-.++.++..|.+.  ++.-..+.+.+.||..++
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            456666777785 7889999999987777888886543     35677888888999883  344566678899999999


Q ss_pred             HHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc-C-------chHHHHh-hhccCCHHHHHHHHHHHHhhhhccchHHHH
Q 006669          443 ILRAGSMEARENAAATLFSLSLLDENKIIIGAS-G-------AIPALVD-LLQNGSTRGRKDAATALFNLCIYMGNKGRA  513 (636)
Q Consensus       443 lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-g-------~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~~~~n~~~l  513 (636)
                      .+..|+.-.+.-|.-++..+-.++..-..+... .       .+..+|. +.++.+++..+..+++-..|+.+...|..+
T Consensus       153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL  232 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREAL  232 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999999999999988777655555432 1       2222332 334568899999999988898877666655


Q ss_pred             HH
Q 006669          514 VR  515 (636)
Q Consensus       514 v~  515 (636)
                      -.
T Consensus       233 ~~  234 (268)
T 2fv2_A          233 RQ  234 (268)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=93.05  E-value=0.015  Score=59.42  Aligned_cols=48  Identities=19%  Similarity=0.408  Sum_probs=37.7

Q ss_pred             cccCccchhhccC----Cee----cCCCchhhhHHHHHHHcCCC----------CCCCCCCccccc
Q 006669          257 DFLCPISLELMRD----PVI----VATGQTYERSYIQRWIDCGN----------VTCPKTQQKLEH  304 (636)
Q Consensus       257 ~f~CPis~~~m~d----Pv~----~~~G~t~~r~~I~~w~~~~~----------~~cP~~~~~l~~  304 (636)
                      ..-|+||...+.+    |..    ..|||.|-..||.+|+.+..          .+||-|+++++.
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            3469999999877    433    47899999999999997421          469999998753

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.65  E-value=0.082  Score=52.19  Aligned_cols=67  Identities=18%  Similarity=0.010  Sum_probs=42.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCC
Q 006669          522 LLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGA  601 (636)
Q Consensus       522 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~  601 (636)
                      |..++.+.+..++..++..|                 ..+.|..++...++.++..++..+-                  
T Consensus       175 l~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------  219 (244)
T 1lrv_A          175 LGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS------------------  219 (244)
T ss_dssp             GGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC------------------
T ss_pred             HHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC------------------
Confidence            33455666666666555432                 2355666677777777777776641                  


Q ss_pred             hHHHHHhhhcCCHHHHHHHHHHH
Q 006669          602 VIPLTELTKSGTERAKRKATSLL  624 (636)
Q Consensus       602 i~~L~~Ll~~g~~~~k~kA~~lL  624 (636)
                      .+.|..| ++.+..+++.|...|
T Consensus       220 ~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          220 LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHHHc-cCCCHHHHHHHHHHh
Confidence            3566667 888888888876543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=92.05  E-value=0.41  Score=52.15  Aligned_cols=212  Identities=13%  Similarity=0.097  Sum_probs=133.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHH---h--------cC--cHHHHHHHHHHHH
Q 006669          395 AIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQIL---R--------AG--SMEARENAAATLF  460 (636)
Q Consensus       395 ~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL---~--------~~--~~e~~~~Aa~~L~  460 (636)
                      ....|+.-|-++..+++--|+.+|+.+.. +............ ...++++   .        ++  -..+|+.|+.+|.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            34556666677899999999999999876 3211111111111 3333333   1        11  3579999999999


Q ss_pred             HccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 006669          461 SLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTI  540 (636)
Q Consensus       461 ~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~  540 (636)
                      .+...++.      ...+..|+..+....++++.-++-.|..+   .+-...  =.++++.++.-|.+.+++++..|+.+
T Consensus       254 aL~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          254 RIYPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             HHTTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence            98222322      34556666666777899999999999988   111101  25688889999999999999999999


Q ss_pred             HHHHhcChhhHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 006669          541 LSVLASNPEAKIAIVKASTIPVLIVLLRTGL--PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKR  618 (636)
Q Consensus       541 L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s--~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~  618 (636)
                      |.-++ .++....+     +..+-+.|...+  ..........|..||..++.   .......+|.|+-++...-..+|.
T Consensus       323 LiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR~  393 (800)
T 3oc3_A          323 LCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVRT  393 (800)
T ss_dssp             HTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHHH
T ss_pred             hhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHHH
Confidence            99888 33332222     233334443211  11233455677777776531   111246789999999999999999


Q ss_pred             HHHHHHHHh
Q 006669          619 KATSLLEHL  627 (636)
Q Consensus       619 kA~~lL~~l  627 (636)
                      .+..+|..+
T Consensus       394 AVL~TL~tf  402 (800)
T 3oc3_A          394 SILNMVKNL  402 (800)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHHHHHH
Confidence            888776543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=91.91  E-value=9.7  Score=44.76  Aligned_cols=218  Identities=11%  Similarity=0.143  Sum_probs=120.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHH---h-cCCHH----HHHHhhcCC---ChHHHHHHHHHHHHhhhCcchHHHH
Q 006669          363 SRSVEERRAAVAEIRSLSKRSTDNRIIIA---D-AGAIP----VLVNLLTTD---DVMTQEHAVTAILNLSIYENNKGLI  431 (636)
Q Consensus       363 s~~~~~~~~Al~~L~~La~~~~~~r~~i~---e-~g~i~----~Lv~lL~s~---d~~~~e~Av~aL~nLs~~~~~k~~I  431 (636)
                      +.++..++.|+..+..++.........+.   . ....+    .++..|.+.   ++.++..|+++|..++..- .+.. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence            56778888999999998753110000000   0 01122    234445555   7889999999999998632 1221 


Q ss_pred             HHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc---------hhHHHHhc--CchHHHHhhhccCC---HH--HHHH
Q 006669          432 MLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE---------NKIIIGAS--GAIPALVDLLQNGS---TR--GRKD  495 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---------~~~~i~~~--g~i~~Lv~LL~~~~---~~--~k~~  495 (636)
                       -...++.++..|.+.+..++..|+.+|.+++...+         .+..+...  ..++.|+.++....   +.  ....
T Consensus       494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~  572 (960)
T 1wa5_C          494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (960)
T ss_dssp             -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence             23356778888877789999999999999876421         13333321  45566667776641   11  2345


Q ss_pred             HHHHHHhhhhcc-chHHHHHHhchHHHHHHHh----cC-CCHHHHHHHHHHHHHHhcC--hhhHHHHHhcCcHHHHHHHH
Q 006669          496 AATALFNLCIYM-GNKGRAVRAGIISALLKML----TD-SRNCMVDEALTILSVLASN--PEAKIAIVKASTIPVLIVLL  567 (636)
Q Consensus       496 A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL----~~-~~~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL  567 (636)
                      ++.+|..++... +.-.... ...++.|+..+    .+ .+......++.+|..++..  ++....+ ....+|.+..+|
T Consensus       573 l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL  650 (960)
T 1wa5_C          573 LMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVF  650 (960)
T ss_dssp             HHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHH
Confidence            666666654321 1111111 12444455444    22 3556666677787777664  3332222 335567777777


Q ss_pred             cCCCHHHHHHHHHHHHHh
Q 006669          568 RTGLPRNKENAAAILLSL  585 (636)
Q Consensus       568 ~~~s~~~ke~A~~~L~~L  585 (636)
                      ........+.+..++..+
T Consensus       651 ~~~~~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          651 SEDIQEFIPYVFQIIAFV  668 (960)
T ss_dssp             HTTCTTTHHHHHHHHHHH
T ss_pred             HhhhHhhHHHHHHHHHHH
Confidence            654444455555554443

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=91.06  E-value=0.14  Score=52.99  Aligned_cols=64  Identities=16%  Similarity=0.282  Sum_probs=50.5

Q ss_pred             CcccCccchhhccCCee-cCCCch--hhhHHHHHHHc-CCCCCCCCCCcccccCCcccchhHHHHHHH
Q 006669          256 ADFLCPISLELMRDPVI-VATGQT--YERSYIQRWID-CGNVTCPKTQQKLEHLTLTPNYVLRSLISQ  319 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~-~~~G~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~  319 (636)
                      -.+.||+|...|..|+- ..|.|.  ||...+-+... .+.-.||+|.+.+...++.....+.+++.+
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            45899999999999996 789887  99888766654 455679999999988888776666555543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.98  E-value=0.1  Score=43.83  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=29.4

Q ss_pred             CcccCccchh-hccCCee--cCCCchhhhHHHHHHHc
Q 006669          256 ADFLCPISLE-LMRDPVI--VATGQTYERSYIQRWID  289 (636)
Q Consensus       256 ~~f~CPis~~-~m~dPv~--~~~G~t~~r~~I~~w~~  289 (636)
                      +++.|+||.+ ...+||.  +.||++||+.+++.|..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4678999996 4799999  99999999999998543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=90.85  E-value=8.9  Score=44.99  Aligned_cols=132  Identities=14%  Similarity=0.112  Sum_probs=83.4

Q ss_pred             CcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh---c--cCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHH
Q 006669          447 GSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL---Q--NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISA  521 (636)
Q Consensus       447 ~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL---~--~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~  521 (636)
                      .++..++.|+.++..++..-....    ...++.++.++   .  +.++.++..++++|..++..-....... ..+++.
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~  550 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL  550 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence            467789999999999875422111    13344444433   2  3478999999999998875422211211 236677


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhcc
Q 006669          522 LLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRTG--LPRNKENAAAILLSLCKR  588 (636)
Q Consensus       522 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~  588 (636)
                      |+..| +  +.+...|+.++.+++..  .+..+..  ...+..+..++..+  +...++.+..++..+...
T Consensus       551 l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          551 LVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            77777 3  67889999999999953  3333432  24556666777663  477888888888877654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=89.78  E-value=9.1  Score=36.97  Aligned_cols=175  Identities=15%  Similarity=0.164  Sum_probs=102.5

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC----C-------ChHHHHHHHHHHHHhhh
Q 006669          357 LVRKLSSRS-VEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTT----D-------DVMTQEHAVTAILNLSI  423 (636)
Q Consensus       357 Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s----~-------d~~~~e~Av~aL~nLs~  423 (636)
                      .++.|++.. .+...+-+..|+..-+.++ .--..+ ..+|+..|+.+|..    +       +...+..++.+|..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            345555432 2222233444443333332 223334 46788888888752    1       34567788899988887


Q ss_pred             CcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--h-hHHH----------HhcCchHHHHhhhccC-
Q 006669          424 YENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--N-KIII----------GASGAIPALVDLLQNG-  488 (636)
Q Consensus       424 ~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~LL~~~-  488 (636)
                      +......++. .+++..|+..|.+.++.++..++.+|..++..++  + ...+          .+..-+.++++.+++. 
T Consensus        84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~  163 (233)
T 2f31_A           84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  163 (233)
T ss_dssp             SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred             ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC
Confidence            7766666665 6788888888888889999999998888876643  3 2222          2224567788888754 


Q ss_pred             CHHHHHHHHHHHHh-hhhccch-------HHHHHHhchHHHHHHHhcCCCHHH
Q 006669          489 STRGRKDAATALFN-LCIYMGN-------KGRAVRAGIISALLKMLTDSRNCM  533 (636)
Q Consensus       489 ~~~~k~~A~~aL~n-L~~~~~n-------~~~lv~~g~v~~Lv~lL~~~~~~~  533 (636)
                      +.+.+. ++-.+.| +....++       |..+...|..+.+-.+=...++.+
T Consensus       164 ~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L  215 (233)
T 2f31_A          164 SIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  215 (233)
T ss_dssp             CHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred             hHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHH
Confidence            344444 4444445 4333332       445556776665554433344443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=89.53  E-value=16  Score=42.85  Aligned_cols=211  Identities=15%  Similarity=0.077  Sum_probs=119.4

Q ss_pred             CChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHH---h--cCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchH
Q 006669          406 DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQIL---R--AGSMEARENAAATLFSLSLLD-ENKIIIGASGAIP  479 (636)
Q Consensus       406 ~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL---~--~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~  479 (636)
                      .+...++.|+.++..++..-....    ...++.++.++   .  +..+.++..+++++..++..- ++...+  ...++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence            567788999999999876322111    13345555544   2  237889999999999887431 111111  13455


Q ss_pred             HHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHH--hchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcC-h-hhHHH
Q 006669          480 ALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR--AGIISALLKMLTD--SRNCMVDEALTILSVLASN-P-EAKIA  553 (636)
Q Consensus       480 ~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~--~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~-~-~~~~~  553 (636)
                      .|+..| +  ++++..|+.++.+++...  +..+..  ..++..|.+++..  .+...+..+..++..++.. + +....
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~  624 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK  624 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            666666 3  678999999999998532  333332  3566667777765  3567777888888877653 2 33322


Q ss_pred             HHhcCcHHHHHHHH----cCC--CHHHHHHHHHHHHHhhcc-----C-----------hHHHHHHHHcCChHHHHHhhhc
Q 006669          554 IVKASTIPVLIVLL----RTG--LPRNKENAAAILLSLCKR-----D-----------TENLACISRLGAVIPLTELTKS  611 (636)
Q Consensus       554 i~~~g~i~~Lv~lL----~~~--s~~~ke~A~~~L~~L~~~-----~-----------~~~~~~i~~~G~i~~L~~Ll~~  611 (636)
                      ... ..+++++..+    ...  ++..+......|..|+.-     .           ++.... .....++.+..++..
T Consensus       625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~  702 (971)
T 2x1g_F          625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEM  702 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHh
Confidence            222 2334444433    322  343444455455444321     0           000111 123467777777654


Q ss_pred             --CCHHHHHHHHHHHHHhhc
Q 006669          612 --GTERAKRKATSLLEHLRK  629 (636)
Q Consensus       612 --g~~~~k~kA~~lL~~l~~  629 (636)
                        .++.+.+.+..+++.+..
T Consensus       703 ~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          703 WVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             TTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHH
Confidence              367889999988887654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=88.69  E-value=19  Score=37.64  Aligned_cols=177  Identities=15%  Similarity=0.145  Sum_probs=108.3

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC-----------CChHHHHHHHHHHHHh
Q 006669          355 EALVRKLSSRS-VEERRAAVAEIRSLSKRST-DNRIIIADAGAIPVLVNLLTT-----------DDVMTQEHAVTAILNL  421 (636)
Q Consensus       355 ~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~-~~r~~i~e~g~i~~Lv~lL~s-----------~d~~~~e~Av~aL~nL  421 (636)
                      ...+..|.++. .+.....+..|+.--+.++ .--..+. .+|+..|+.+|..           .+...+..++.+|..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            34556665543 2222334555554333332 2233444 6778888888841           2446778888999988


Q ss_pred             hhCcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--h-hHH----------HHhcCchHHHHhhhcc
Q 006669          422 SIYENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--N-KII----------IGASGAIPALVDLLQN  487 (636)
Q Consensus       422 s~~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~----------i~~~g~i~~Lv~LL~~  487 (636)
                      ..+......++. ..+|..|+..|.+..+.++..+..+|..++..++  + ...          .++..-+..++..|++
T Consensus       148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~  227 (383)
T 3eg5_B          148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  227 (383)
T ss_dssp             TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence            877767666665 6788999999988899999999999988876653  2 222          2233567888999887


Q ss_pred             C-CHHHHHHHHHHHHhhhhccch-------HHHHHHhchHHHHHHHhcC-CCHHH
Q 006669          488 G-STRGRKDAATALFNLCIYMGN-------KGRAVRAGIISALLKMLTD-SRNCM  533 (636)
Q Consensus       488 ~-~~~~k~~A~~aL~nL~~~~~n-------~~~lv~~g~v~~Lv~lL~~-~~~~~  533 (636)
                      + +.+.+..++..+=.+....++       |..+...|..+.+-. |+. .++.+
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L  281 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM  281 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence            4 455554444433334443332       445556776666655 544 44433

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=88.03  E-value=0.41  Score=49.40  Aligned_cols=64  Identities=13%  Similarity=0.272  Sum_probs=50.5

Q ss_pred             CCcccCccchhhccCCee-cCCCch--hhhHHHHHHHc-CCCCCCCCCCcccccCCcccchhHHHHHH
Q 006669          255 PADFLCPISLELMRDPVI-VATGQT--YERSYIQRWID-CGNVTCPKTQQKLEHLTLTPNYVLRSLIS  318 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~-~~~G~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~pn~~lr~lI~  318 (636)
                      .-.+.||||...|+-|+- ..|.|.  ||...+-+... .+.-.||+|++.+...++.-...+.+.+.
T Consensus       213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~  280 (360)
T 4fo9_A          213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN  280 (360)
T ss_dssp             EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred             EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence            346899999999999996 789887  99888777664 45567999999998888876655555544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=87.75  E-value=5.1  Score=38.80  Aligned_cols=129  Identities=18%  Similarity=0.150  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--h-HHHHHh----------
Q 006669          491 RGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLASNPE--A-KIAIVK----------  556 (636)
Q Consensus       491 ~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~-~~~i~~----------  556 (636)
                      .....++.+|..+..+..+...++. .+++..|+..|.+.+..++..++.+|..+|..++  | ...+.+          
T Consensus        69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e  148 (233)
T 2f31_A           69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE  148 (233)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence            4456777888888777777777766 6789999999988899999999999999998654  5 444332          


Q ss_pred             cCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh------HHHHHHHHcCChHHHHHhhhcCCHHHHHH
Q 006669          557 ASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT------ENLACISRLGAVIPLTELTKSGTERAKRK  619 (636)
Q Consensus       557 ~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~------~~~~~i~~~G~i~~L~~Ll~~g~~~~k~k  619 (636)
                      ..-...+++.++.. +...+..+...+-.+....+      .-+.++...|..+.+-.+-..+++.....
T Consensus       149 ~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          149 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence            23466677777643 34555555555555555443      23445567787777777766666665543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=87.35  E-value=6  Score=42.39  Aligned_cols=128  Identities=21%  Similarity=0.238  Sum_probs=92.8

Q ss_pred             HHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcC
Q 006669          479 PALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKAS  558 (636)
Q Consensus       479 ~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g  558 (636)
                      ..++.. ..|+...|+.|+..|.....+-+..+    ..++.+++++..+.+..++..|+.-|..+|.. +....+    
T Consensus        32 ~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki----  101 (507)
T 3u0r_A           32 QVILDG-VKGGTKEKRLAAQFIPKFFKHFPELA----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV----  101 (507)
T ss_dssp             HHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGH----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH----
T ss_pred             HHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH----
Confidence            334443 34678999999998887665444322    23677899999999999999999999999997 554433    


Q ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHH
Q 006669          559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLE  625 (636)
Q Consensus       559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~  625 (636)
                       +..|+++|.+..+......-..|..+...++.        |.+..|...+.+|++.+|+++...|+
T Consensus       102 -aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          102 -ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             -HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence             56889999988877777777777777765543        34556666666678888888776664

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=86.67  E-value=9.4  Score=39.91  Aligned_cols=142  Identities=18%  Similarity=0.188  Sum_probs=93.7

Q ss_pred             cCchHHHHhhhcc-----------CCHHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHH
Q 006669          475 SGAIPALVDLLQN-----------GSTRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILS  542 (636)
Q Consensus       475 ~g~i~~Lv~LL~~-----------~~~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~  542 (636)
                      .+|+..|+.+|..           .+......++.+|..+.-+..+...++. ...|..|+..|.+.+..++..|+.+|+
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~  187 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  187 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            3456666666541           1235556677888888776667666666 678999999998899999999999999


Q ss_pred             HHhcChh--h-HHHHHh----------cCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh--H----HHHHHHHcCCh
Q 006669          543 VLASNPE--A-KIAIVK----------ASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT--E----NLACISRLGAV  602 (636)
Q Consensus       543 ~La~~~~--~-~~~i~~----------~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~--~----~~~~i~~~G~i  602 (636)
                      .+|..++  | ...+.+          ..-...++..|+.. +...+..+...+-.++...+  +    .+.++...|..
T Consensus       188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  267 (383)
T 3eg5_B          188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  267 (383)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence            9998654  3 443332          23467788888763 45555555555555665443  2    33445677877


Q ss_pred             HHHHHhhhcCCHHH
Q 006669          603 IPLTELTKSGTERA  616 (636)
Q Consensus       603 ~~L~~Ll~~g~~~~  616 (636)
                      +.+-.+-..+++..
T Consensus       268 ~il~~lr~~~~~~L  281 (383)
T 3eg5_B          268 QVLQELREIENEDM  281 (383)
T ss_dssp             HHHHHHTTSCCHHH
T ss_pred             HHHHHHhcCCChhH
Confidence            77777554445544

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=86.27  E-value=17  Score=38.89  Aligned_cols=171  Identities=19%  Similarity=0.168  Sum_probs=106.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      ....++..- .++..+++-|+..|....++-|+....     ++..++.+...+|..++..|+..|-.++++ ++-..+ 
T Consensus        30 ~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-  101 (507)
T 3u0r_A           30 AYQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-  101 (507)
T ss_dssp             HHHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-
T ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-
Confidence            344555543 457889999999999999988877654     467899999999999999999999999988 554444 


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh--ccchH
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI--YMGNK  510 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~--~~~n~  510 (636)
                          ...|+.+|...++.-....-.+|..|-..+.       .+.+..|..-+..+++.+++.++.-|..=..  ..+..
T Consensus       102 ----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l  170 (507)
T 3u0r_A          102 ----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVL  170 (507)
T ss_dssp             ----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTS
T ss_pred             ----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhc
Confidence                4567888887765444444444444422221       1445555555556677777777766643111  11112


Q ss_pred             HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 006669          511 GRAVRAGIISALLKMLTDSRNCMVDEALTILS  542 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~  542 (636)
                      ..-++.-++..+-+.|.+....--.....+|.
T Consensus       171 ~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~  202 (507)
T 3u0r_A          171 TKEVEELILTESKKVLEDVTGEEFVLFMKILS  202 (507)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            23333334555555565554444444445553

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=85.10  E-value=0.64  Score=45.71  Aligned_cols=44  Identities=16%  Similarity=0.085  Sum_probs=23.8

Q ss_pred             HHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 006669          479 PALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTI  540 (636)
Q Consensus       479 ~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~  540 (636)
                      +.|..++.+.++.++..++..+.                 .+.|..+ .+.+..++..|...
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~  240 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGR  240 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHH
Confidence            44555555555555555555431                 3444444 66677766666543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=84.79  E-value=15  Score=42.92  Aligned_cols=153  Identities=17%  Similarity=0.171  Sum_probs=93.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh---cCCChHHHHHHHHHHHHhhhC-cchHHHHHHhCCh
Q 006669          362 SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL---TTDDVMTQEHAVTAILNLSIY-ENNKGLIMLAGAI  437 (636)
Q Consensus       362 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL---~s~d~~~~e~Av~aL~nLs~~-~~~k~~I~~~G~I  437 (636)
                      .+.++..++.++..+..++..-....     ...++.++..+   ..+++.++..++.++..++.. ..+.. . -...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHHH
Confidence            45678889999999999886533211     12344455444   335688899999999988762 22222 2 24678


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhccC--CHHHHHHHHHHHHhhhhcc--chHH
Q 006669          438 PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQNG--STRGRKDAATALFNLCIYM--GNKG  511 (636)
Q Consensus       438 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~~~--~~~~k~~A~~aL~nL~~~~--~n~~  511 (636)
                      +.++..|.+  +.++..|+.+|.+++..  .+..+...  ..+..|..++..+  +...+..+..++..+....  +...
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            888888754  78889999999999843  22222211  3344445555543  5678888888888876543  2333


Q ss_pred             HHHHhchHHHHHHHh
Q 006669          512 RAVRAGIISALLKML  526 (636)
Q Consensus       512 ~lv~~g~v~~Lv~lL  526 (636)
                      ..+ ...++++...+
T Consensus       608 ~~~-~~l~~~l~~~l  621 (963)
T 2x19_B          608 KNL-HSLISPYIQQL  621 (963)
T ss_dssp             HHH-HHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHH
Confidence            333 23555555544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=84.66  E-value=29  Score=36.20  Aligned_cols=175  Identities=15%  Similarity=0.169  Sum_probs=102.8

Q ss_pred             HHHHhcCCCH-HHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcC----C-------ChHHHHHHHHHHHHhhh
Q 006669          357 LVRKLSSRSV-EERRAAVAEIRSLSKRSTDN-RIIIADAGAIPVLVNLLTT----D-------DVMTQEHAVTAILNLSI  423 (636)
Q Consensus       357 Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~-r~~i~e~g~i~~Lv~lL~s----~-------d~~~~e~Av~aL~nLs~  423 (636)
                      .|+.|.+... ......+..|+..-+.++-. -..+. .+|+..|+.+|..    .       +...+..++.+|..+..
T Consensus         9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN   87 (386)
T 2bnx_A            9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   87 (386)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence            4555554322 21122344444433333322 23333 5778888887742    1       34567788899988887


Q ss_pred             CcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc--h-hHHH----------HhcCchHHHHhhhccC-
Q 006669          424 YENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLDE--N-KIII----------GASGAIPALVDLLQNG-  488 (636)
Q Consensus       424 ~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~LL~~~-  488 (636)
                      +..+...++. .+++..|+..|.+.++.++..++.+|..++..++  + ...+          .+..-+..+|+.+.++ 
T Consensus        88 ~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~  167 (386)
T 2bnx_A           88 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  167 (386)
T ss_dssp             SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS
T ss_pred             CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCC
Confidence            7666666665 6788888888888889999999988888776653  2 2222          2234677788888754 


Q ss_pred             CHHHHHHHHHHHHh-hhhccch-------HHHHHHhchHHHHHHHhcCCCHHH
Q 006669          489 STRGRKDAATALFN-LCIYMGN-------KGRAVRAGIISALLKMLTDSRNCM  533 (636)
Q Consensus       489 ~~~~k~~A~~aL~n-L~~~~~n-------~~~lv~~g~v~~Lv~lL~~~~~~~  533 (636)
                      +.+.+. ++-.+.| +....++       |..+...|..+.+-.+=...++.+
T Consensus       168 ~~e~~~-a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          168 SIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             CHHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             hHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence            444444 4444555 4433332       455666776666554433345444

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=84.56  E-value=12  Score=43.65  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=101.9

Q ss_pred             hcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhh---ccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHH
Q 006669          445 RAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLL---QNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISA  521 (636)
Q Consensus       445 ~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL---~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~  521 (636)
                      .+.++..++.++.++..++..-...    ....++.++..+   .++++.++..+++++..++..-....... ..+++.
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~  533 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL  533 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence            3457888999999999987542210    012333444333   33578899999999998875422212233 358888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh--cCcHHHHHHHHcC--CCHHHHHHHHHHHHHhhccCh-HHHHHH
Q 006669          522 LLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK--ASTIPVLIVLLRT--GLPRNKENAAAILLSLCKRDT-ENLACI  596 (636)
Q Consensus       522 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~i  596 (636)
                      |+..|.+  +.+...|+.+|.++|..  .+..+..  ...+..|..++..  .+...++.+..++..+....+ +.....
T Consensus       534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~  609 (963)
T 2x19_B          534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN  609 (963)
T ss_dssp             HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            8888854  78899999999999962  2222211  1234445555554  256788888888888775443 333332


Q ss_pred             HHcCChHHHHHhh----hcC-CHHHHHHHHHHHHHh
Q 006669          597 SRLGAVIPLTELT----KSG-TERAKRKATSLLEHL  627 (636)
Q Consensus       597 ~~~G~i~~L~~Ll----~~g-~~~~k~kA~~lL~~l  627 (636)
                      .+ ..++++...+    .+. ++..+.....++..|
T Consensus       610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l  644 (963)
T 2x19_B          610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL  644 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            22 1343443332    232 566666555555544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=84.37  E-value=11  Score=39.46  Aligned_cols=129  Identities=18%  Similarity=0.150  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--h-HHHHH----------
Q 006669          490 TRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLASNPE--A-KIAIV----------  555 (636)
Q Consensus       490 ~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~-~~~i~----------  555 (636)
                      ......++.+|..+..+..+...++. .+++..|+..|...+..++..++.+|..+|..++  | ...+.          
T Consensus        72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~  151 (386)
T 2bnx_A           72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  151 (386)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence            34566677888888777767666666 6788999999988889999999999999998654  5 43332          


Q ss_pred             hcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh------HHHHHHHHcCChHHHHHhhhcCCHHHHH
Q 006669          556 KASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT------ENLACISRLGAVIPLTELTKSGTERAKR  618 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~------~~~~~i~~~G~i~~L~~Ll~~g~~~~k~  618 (636)
                      +..-+..+++.+..+ +...+..+...+-.+....+      ..+.++...|..+.|-.+-..+++....
T Consensus       152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~  221 (386)
T 2bnx_A          152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  221 (386)
T ss_dssp             TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence            223466688877643 45555555555555665444      2344566778777777776656665543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=83.38  E-value=12  Score=38.42  Aligned_cols=109  Identities=14%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             HHHhhhCcch-HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhc-cCCHHHHHH
Q 006669          418 ILNLSIYENN-KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ-NGSTRGRKD  495 (636)
Q Consensus       418 L~nLs~~~~~-k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~-~~~~~~k~~  495 (636)
                      |+||..++.+ -.-+++..++..+..+.+-++.+........|...|....-+ .+--...+|.++.++. ++..++...
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccCCCcceEEe
Confidence            5677777666 566788999999999999999999999999988887543211 1112267788888776 567888899


Q ss_pred             HHHHHHhhhhcc-chHHHHHHhchHHHHHHHhc
Q 006669          496 AATALFNLCIYM-GNKGRAVRAGIISALLKMLT  527 (636)
Q Consensus       496 A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~  527 (636)
                      ..+.|.|...+. +.+...+..|+|+.|-..+.
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            999999987766 56888889999999988864

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=83.08  E-value=6.9  Score=46.51  Aligned_cols=141  Identities=12%  Similarity=0.023  Sum_probs=87.4

Q ss_pred             CcHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhccC-----CHHHHHHHHHHHHhhhhccchHHHHHHhchHH
Q 006669          447 GSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNG-----STRGRKDAATALFNLCIYMGNKGRAVRAGIIS  520 (636)
Q Consensus       447 ~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~~~-----~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~  520 (636)
                      .++..++.++.+++.++..... ...-.-..+++.|+.++...     ...++..++++|...+..-....... ..++.
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~  543 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL  543 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence            4799999999999999865432 12212225778888887641     23344566677776654322222332 23666


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh------cCcHHHHHHHH----cCCCHHHHHHHHHHHHHhhccCh
Q 006669          521 ALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK------ASTIPVLIVLL----RTGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       521 ~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~------~g~i~~Lv~lL----~~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                      .|++.|.+.++++.+.|+.++.+||..  ++..+..      ...++.++..+    ..-.+.....+..++..+...-+
T Consensus       544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            677777777889999999999999973  3344432      12344444433    23456666677777776665443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=81.30  E-value=28  Score=41.28  Aligned_cols=222  Identities=13%  Similarity=0.089  Sum_probs=128.9

Q ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCChHHHHHHHHHHHHhhh-----
Q 006669          350 DVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMTQEHAVTAILNLSI-----  423 (636)
Q Consensus       350 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~-s~d~~~~e~Av~aL~nLs~-----  423 (636)
                      +...+..+++.+-+++.+.|.+|-..|..+.+. +         +++..+..+|. +.+..++..|+..|.|...     
T Consensus        14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~   83 (1049)
T 3m1i_C           14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL   83 (1049)
T ss_dssp             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred             cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence            344566666666667777788888888777543 2         34445555554 4578889999999988753     


Q ss_pred             -CcchHHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHH
Q 006669          424 -YENNKGLIMLAGAIPSIVQILRAG-----SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAA  497 (636)
Q Consensus       424 -~~~~k~~I~~~G~I~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~  497 (636)
                       .++.+..| +...+..+...-..+     +..++...+.++..++..+--.   .-.+.++.|+.+++ .++..+..++
T Consensus        84 l~~~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l  158 (1049)
T 3m1i_C           84 LPNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNM  158 (1049)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHH
Confidence             22334433 222333333322111     2455666666666664321100   11367888888886 5566677777


Q ss_pred             HHHHhhhhc-----cc----hH-----HHHHH--hchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcH
Q 006669          498 TALFNLCIY-----MG----NK-----GRAVR--AGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTI  560 (636)
Q Consensus       498 ~aL~nL~~~-----~~----n~-----~~lv~--~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i  560 (636)
                      .+|..|+..     .+    .|     ..+.+  ..++..+...+.+ .+..+...++.++......-+. ..+.+...+
T Consensus       159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll  237 (1049)
T 3m1i_C          159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNIL  237 (1049)
T ss_dssp             HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHH
T ss_pred             HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHH
Confidence            777777521     01    11     11222  1233444555533 4677888899999887664332 224455666


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhcc
Q 006669          561 PVLIVLLRTGLPRNKENAAAILLSLCKR  588 (636)
Q Consensus       561 ~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  588 (636)
                      +.+.+.+. .++..+..|+.+|..+...
T Consensus       238 ~~l~~~~l-~~~~~~~~a~~~L~~i~~~  264 (1049)
T 3m1i_C          238 ELLSTKFM-TSPDTRAITLKCLTEVSNL  264 (1049)
T ss_dssp             HHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence            66663222 3678888999998888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	636
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	3e-23
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-20
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-15
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	7e-18
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	8e-07
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-14
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-04
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-12
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-12
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	9e-12
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-10
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-05
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.004
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-08
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	8e-08
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	7e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	9e-05
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-04
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	0.002

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.7 bits (227), Expect = 3e-23
 Identities = 49/74 (66%), Positives = 59/74 (79%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
            P  F CPISLELM+DPVIV+TGQTYERS IQ+W+D G+ TCPK+Q+ L H  LTPNYVL
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 314 RSLISQWCTMHNIE 327
           +SLI+ WC  + IE
Sbjct: 65  KSLIALWCESNGIE 78

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (223), Expect = 8e-20
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 3/178 (1%)

Query: 393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLA-GAIPSIVQILR-AGSME 450
             AIP L  LL  +D +    A   +  LS  E ++  IM +   + +IV+ ++    +E
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 451 ARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGN 509
                A TL +LS   E  + I  SG IPALV +L +        A T L NL ++  G 
Sbjct: 76  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 510 KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLL 567
           K     AG +  ++ +L  +    +      L +LA   +    I+ AS  P  +V +
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (219), Expect = 3e-19
 Identities = 46/259 (17%), Positives = 72/259 (27%), Gaps = 22/259 (8%)

Query: 290 CGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSG 349
             N+TC   + K+    +     L   + +     +I +P   A   +            
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349

Query: 350 DVVAIEALVRK---LSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD 406
            V     L      L   S      A   +         N   + + GAIP LV LL   
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 409

Query: 407 DVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD 466
              TQ             E  +                     E  E     L  L+   
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVR-------------------MEEIVEGCTGALHILARDV 450

Query: 467 ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKML 526
            N+I+I     IP  V LL +     ++ AA  L  L             G  + L ++L
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 510

Query: 527 TDSRNCMVDEALTILSVLA 545
                 +   A  +L  ++
Sbjct: 511 HSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (216), Expect = 7e-19
 Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 4/247 (1%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TTDDVMTQ 411
           AI  L + L+         A   +  LSK+      I+     +  +V  +  T+DV T 
Sbjct: 18  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 412 EHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKII 471
                 + NLS +      I  +G IP++V++L +        A  TL +L L  E   +
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137

Query: 472 IGA-SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-VRAGIISALLKMLTDS 529
               +G +  +V LL   + +        L  L           + +G   AL+ ++   
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197

Query: 530 RN-CMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKR 588
               ++     +L VL+     K AIV+A  +  L + L     R  +N    L +L   
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257

Query: 589 DTENLAC 595
            T+    
Sbjct: 258 ATKQEGM 264

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (184), Expect = 5e-15
 Identities = 97/559 (17%), Positives = 175/559 (31%), Gaps = 60/559 (10%)

Query: 76  TSLLWWNDLVVALQASKRLLAVACCYSSGDSSDEAAEKISFQFQCVMWKLEKALGNIPYD 135
           T LL   D VV  +A+  +  ++          EA+     +   ++  + + + N    
Sbjct: 23  TKLLNDEDQVVVNKAAVMVHQLS--------KKEASRHAIMRSPQMVSAIVRTMQNTN-- 72

Query: 136 RFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHV 195
                 E           L    E   ++       AL + L   V             +
Sbjct: 73  ----DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------SVLFYAI 122

Query: 196 PDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENSAIKSMAEIKKPDVLIIP 255
               +   H     M             +    +V         ++ +A   +   LII 
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 182

Query: 256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRS 315
           A       + +MR         TYE+           ++   + +           +   
Sbjct: 183 ASGGPQALVNIMRT-------YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235

Query: 316 LISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEERRAAVAE 375
           L         + Q        +  +      + G    +  LV+ L S  +     A   
Sbjct: 236 L---TDPSQRLVQNCLWTLRNLSDAATKQEGMEG---LLGTLVQLLGSDDINVVTCAAGI 289

Query: 376 IRSLSKRSTDNRIIIADAGAIPVLVNLLTTD--DVMTQEHAVTAILNLS----IYENNKG 429
           + +L+  +  N++++   G I  LV  +          E A+ A+ +L+      E  + 
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349

Query: 430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSL-SLLDENKIIIGASGAIPALVDLLQNG 488
            + L   +P +V++L   S      A   L    +L   N   +   GAIP LV LL   
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 409

Query: 489 STRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNP 548
               ++  +          G +   +  G   AL                    +LA + 
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL-------------------HILARDV 450

Query: 549 EAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTEL 608
             +I I   +TIP+ + LL + +   +  AA +L  L  +D E    I   GA  PLTEL
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTEL 509

Query: 609 TKSGTERAKRKATSLLEHL 627
             S  E     A ++L  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 9e-15
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 5/222 (2%)

Query: 417 AILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGAS 475
           A++NL  Y+++    +   AIP + ++L          AA  +  LS  + +   I+ + 
Sbjct: 1   AVVNLINYQDDA--ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 476 GAIPALVDLLQN-GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMV 534
             + A+V  +QN       +  A  L NL  +        ++G I AL+KML    + ++
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 535 DEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENL 593
             A+T L  L      AK+A+  A  +  ++ LL     +        L  L   + E+ 
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 594 ACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQLQQ 635
             I   G    L  + ++ T       TS +  +  +    +
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 220

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.4 bits (187), Expect = 7e-18
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVL 313
           IP      IS ELMR+P I  +G TY+R  I+  +       P T+  L    L PN  +
Sbjct: 4   IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 314 RSLISQWCTMH 324
           + +I  + + +
Sbjct: 64  KEVIDAFISEN 74

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (204), Expect = 2e-17
 Identities = 43/266 (16%), Positives = 74/266 (27%), Gaps = 17/266 (6%)

Query: 352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQ 411
           + I   V+ LSS+  + +      I+    +    +  +   G I  LV+LL + +   Q
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 412 EHAVTAILNLSI-YENNKGLIMLAGAIPSIVQI-LRAGSMEARENAAATLFSLSLLDENK 469
           + A  A+ NL      NK        I   V +  R G+ E ++     L++LS  DE K
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 470 IIIGASGAIPALVDLLQNGSTRG---------------RKDAATALFNLCIYMGNKGRAV 514
             + A         ++   S                    +A   L NL      +    
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 515 RAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRN 574
               +   L     +           +             + A        L        
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 575 KENAAAILLSLCKRDTENLACISRLG 600
            E ++    S       N      L 
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLP 267

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 9e-16
 Identities = 38/395 (9%), Positives = 112/395 (28%), Gaps = 29/395 (7%)

Query: 140 SEEVQEQVVLARSQL--KRATERYGSMNSRNFFHALSQPLEKEVSITNHEVKAKANHVPD 197
           ++ VQ+    A   L  +  T +  +        A+S       +    ++     ++  
Sbjct: 57  NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116

Query: 198 TIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENS--------AIKSMAEIKKP 249
           T + +       +  L  R     S  C  +  ++    +          +++++     
Sbjct: 117 TDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 250 DVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP 309
              +     L    +  +++ V  +             +   +                 
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236

Query: 310 NYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALVRKLSSRSVEER 369
                +  S      N    +   N      +          +     +R   +   + +
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296

Query: 370 RAAVAE----------IRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAIL 419
           + A  E                 S  +++I      +P +  LL + +        + + 
Sbjct: 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356

Query: 420 NLSIYENNKGLIMLAGAIPSIVQILRAG------SMEARENAAATLFSLSLLD-ENKIII 472
           N+S +     ++      P + ++L +       S +   +A  T+ +L     +     
Sbjct: 357 NMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQY 415

Query: 473 GASGAIPALVDLLQN-GSTRGRKDAATALFNLCIY 506
            +S  +  +++L ++  S +  + A   L ++   
Sbjct: 416 FSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 45/374 (12%), Positives = 107/374 (28%), Gaps = 24/374 (6%)

Query: 230 VVAEGQENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWID 289
              +     A+  +      ++       L  +S        ++A         +     
Sbjct: 82  TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFS 141

Query: 290 CGNVTCPKTQQKLEHLTLTPN--YVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDV 347
                     +++    +  N    LR+L S       +    GL +  +          
Sbjct: 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201

Query: 348 SGDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDD 407
             D  ++E  +  L + S           R L   + +     +  G      + +    
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMM--- 258

Query: 408 VMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGS-------MEARENAAATLF 460
                +    +          G +  + AI + + ++                       
Sbjct: 259 ---NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315

Query: 461 SLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIIS 520
            L     +++I      +P +  LLQ+G++   +  A+ L N+  +              
Sbjct: 316 GLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVF-P 374

Query: 521 ALLKMLTDSRNCMVDE-------ALTILSVLASNPEAKIAIVKASTIPVLIVLLR-TGLP 572
            + ++LT       +          T+ +++AS P+       +S +  +I L R +  P
Sbjct: 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434

Query: 573 RNKENAAAILLSLC 586
           +  E A  +L  + 
Sbjct: 435 KAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 2/151 (1%)

Query: 478 IPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGIISALLKMLTDSRNCMVDE 536
           IP  V  L +   + +   A  + + C      K +  + G I  L+ +L      +   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 537 ALTILSVLA-SNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC 595
           A   L  L   +   K+   + + I   + LLR       +     LL       E    
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 596 ISRLGAVIPLTELTKSGTERAKRKATSLLEH 626
           +      +    +    +      +    E 
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREV 154

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 8e-07
 Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 353 AIEALVRKLSSR------SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLL-TT 405
               + R L+S       S +   +A   +R+L             +  +  ++NL  ++
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS 431

Query: 406 DDVMTQEHAVTAILNLSIYENNKGLI 431
                 E A   + ++   +  +G++
Sbjct: 432 ASPKAAEAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 15/69 (21%), Positives = 30/69 (43%)

Query: 559 TIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKR 618
           TIP  +  L +   + +   A  +   C +D      + +LG +  L +L +S  +  ++
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 619 KATSLLEHL 627
            A   L +L
Sbjct: 63  AAAGALRNL 71

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.7 bits (179), Expect = 2e-14
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 10/194 (5%)

Query: 353 AIEALVRKLSSRSVEERRAAVAEIRS-LSKRSTDNRIIIADAGAIPVLVNLLT-TDDVMT 410
           ++E +V+ ++S ++E +  A    R  LS+        I  AG IP  V+ L  TD    
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73

Query: 411 QEHAVTAILNL-SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK 469
           Q  +  A+ N+ S        ++  GAIP+ + +L +      E A   L +++      
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133

Query: 470 I-IIGASGAIPALVDLLQNGSTRGRKD-----AATALFNLCIYMGN-KGRAVRAGIISAL 522
             ++   GAI  L+ LL                   L NLC              I+  L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193

Query: 523 LKMLTDSRNCMVDE 536
           +++L  +   ++ +
Sbjct: 194 VRLLHHNDPEVLAD 207

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 47/349 (13%), Positives = 101/349 (28%), Gaps = 18/349 (5%)

Query: 119 QCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLE 178
           Q        A+             + EQ V A   +      +  +  ++        L 
Sbjct: 91  QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 150

Query: 179 KEVSITNHEVKAKANHVPDTIDSECHDADQMMNKLERRFSSVSSEVCPSDDVVAEGQENS 238
               ++        N      +   +           +       +   +D         
Sbjct: 151 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCW 210

Query: 239 AIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKT 298
           AI  + +     + ++    + P  ++L+                       GN+     
Sbjct: 211 AISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--------ELPIVTPALRAIGNIVTGTD 262

Query: 299 QQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAIEALV 358
           +Q  + +      V  SL++   T    E    ++N  I            +   +  LV
Sbjct: 263 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN--ITAGRQDQIQQVVNHGLVPFLV 320

Query: 359 RKLSSRSVEERRAAVAEIRSL-SKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTA 417
             LS    + ++ A   I +  S  + +  + +   G I  L+NLL+  D    +  + A
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 380

Query: 418 ILNL-----SIYENNKGLIML--AGAIPSIVQILRAGSMEARENAAATL 459
           I N+      + E  K  IM+   G +  I  + R  +    + +   +
Sbjct: 381 ISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 33/195 (16%), Positives = 75/195 (38%), Gaps = 10/195 (5%)

Query: 358 VRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTA 417
           V+ L +  +     A+  I ++   + +    + DAGA+ V  +LLT      Q+ A   
Sbjct: 236 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295

Query: 418 ILNLSIYENN-KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL--DENKIIIGA 474
           + N++    +    ++  G +P +V +L     + ++ AA  + + +     E  + +  
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355

Query: 475 SGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRA-------VRAGIISALLKMLT 527
            G I  L++LL    T+  +    A+ N+       G            G +  +  +  
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415

Query: 528 DSRNCMVDEALTILS 542
                +   +L ++ 
Sbjct: 416 HENESVYKASLNLIE 430

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 519 ISALLKMLTDSRNCMVDEALTILSVLASNP--EAKIAIVKASTIPVLIVLL-RTGLPRNK 575
           +  ++K +  +      +A      L S         I++A  IP  +  L +T     +
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 576 ENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL 627
             +A  L ++    +E    +   GA+     L  S       +A   L ++
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI 126

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 3e-12
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 254 IPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDC--GNVTCPKTQQKLEHLTLTPNY 311
           +     CPI LEL+++PV       + +  + + ++   G   CP  +  +   +L  + 
Sbjct: 18  MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77

Query: 312 VLRSLISQ 319
               L+ +
Sbjct: 78  RFSQLVEE 85

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 7e-12
 Identities = 66/454 (14%), Positives = 132/454 (29%), Gaps = 29/454 (6%)

Query: 119  QCVMWKLEKALGNIPYDRFDISEEVQEQVVLARSQLKRATERYGSMNSRNFFHALSQPLE 178
              V      A   +  D   +  E    +     + +RA +              S  L 
Sbjct: 624  TTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT 683

Query: 179  KEVSITNHEVKAKANHVPDTIDSECH--DADQMMNKLERRFSSVSSEVCPS--DDVVAEG 234
              +     +         D   S+        +        S +S  +       V +  
Sbjct: 684  AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL 743

Query: 235  QENSAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVT 294
             +  A+ +M +  +  V+    +      L ++  PV   +     +        C    
Sbjct: 744  LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAAL 803

Query: 295  CPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVSGDVVAI 354
                 ++   +       +++  S           +G          G   D+SG +   
Sbjct: 804  TRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLG--------EVGHHIDLSGQLELK 855

Query: 355  EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHA 414
              ++   SS S E + AA   + S+S  +            +P ++  +T+     Q   
Sbjct: 856  SVILEAFSSPSEEVKSAASYALGSISVGNLPE--------YLPFVLQEITSQPK-RQYLL 906

Query: 415  VTAILNLSIYENNKGLIMLAGAI-PSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG 473
            + ++  +    +  GL      I   +++         R   A  L  L+L+D   ++  
Sbjct: 907  LHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLL-- 964

Query: 474  ASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCM 533
                 P L   L +GS+  R    TA+             +    I   LK L D    +
Sbjct: 965  -----PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNV 1019

Query: 534  VDEALTILSVLASNPEAKIAIVKASTIPVLIVLL 567
               AL   +  A N  + I  +  + +P L    
Sbjct: 1020 RRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNET 1053

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 9e-12
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 238 SAIKSMAEIKKPDVLIIPADFLCPISLELMRDPVIVATGQ-TYERSYIQRWIDCGNVTCP 296
           S    + + ++        +FL PI   LM DPV++ + + T +RS I R +     T P
Sbjct: 3   SGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDP 61

Query: 297 KTQQKLEHLTLTPNYVLRSLISQWCTMHN 325
             +  L    + PN  L+  I +W     
Sbjct: 62  FNRSPLTMDQIRPNTELKEKIQRWLAERK 90

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (145), Expect = 3e-10
 Identities = 43/244 (17%), Positives = 92/244 (37%), Gaps = 6/244 (2%)

Query: 383 STDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGL--IMLAGAIPSI 440
           S D +        +P +   L +DD+  Q  A      +   E+   +  ++ AG +P +
Sbjct: 65  SADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRL 124

Query: 441 VQILRAGS-MEARENAAATLFSLSLLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAAT 498
           V+ +R       +  AA  L +++     +  ++  + A+P  + LL  GS   ++ A  
Sbjct: 125 VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIW 184

Query: 499 ALFNLCIY-MGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA-KIAIVK 556
           AL N+       +   ++   +  +L +   ++  ++  A   LS L    +      V 
Sbjct: 185 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 244

Query: 557 ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERA 616
           +  +P L  L+ +       +A   +  L     E +  +  +     L EL    +   
Sbjct: 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 304

Query: 617 KRKA 620
           +  A
Sbjct: 305 QTPA 308

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 13/204 (6%)

Query: 362 SSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNL 421
           S  S   +  A+  + ++   +     ++ +AG +P L  LL++     ++ A   I N+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357

Query: 422 SIY-ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA----SG 476
           +         ++ A  IP +V++L     + ++ A   + + S     +  I       G
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 417

Query: 477 AIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDE 536
            I  L DLL+    R  +    AL N+ + MG   +  R   I+     +  +       
Sbjct: 418 CIKPLCDLLEIADNRIIEVTLDALENI-LKMGEADKEARGLNINENADFIEKA------G 470

Query: 537 ALTILSVLASNPEAKIAIVKASTI 560
            +  +     N   KI   KA  I
Sbjct: 471 GMEKIFNCQQNENDKIY-EKAYKI 493

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 35/169 (20%), Positives = 52/169 (30%), Gaps = 5/169 (2%)

Query: 289 DCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIEQPIGLANGKIKKSDGSFRDVS 348
             GN+      Q    +       LR L+S        E    ++N  I   +       
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN--ITAGNTEQIQAV 368

Query: 349 GDVVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIII---ADAGAIPVLVNLLTT 405
            D   I  LV+ L     + ++ A   I + S        II      G I  L +LL  
Sbjct: 369 IDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 428

Query: 406 DDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEAREN 454
            D    E  + A+ N+                 +   I +AG ME   N
Sbjct: 429 ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 477

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 4/201 (1%)

Query: 431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVD-LLQNGS 489
           ++     P+  +  +A   + RE A   L  L    +N         +  LV   L+ G+
Sbjct: 13  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 72

Query: 490 TRGRKDAATALFNLCIYMG-NKGRAVRAGIISALLKMLTDSRNCMVDE--ALTILSVLAS 546
              R  AA  +      +   + + +  G +  LL++L       V       I  ++  
Sbjct: 73  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 132

Query: 547 NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLT 606
                +  ++     VL+  ++  + + K  +A +L +L     E+   +  +G V  L 
Sbjct: 133 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 192

Query: 607 ELTKSGTERAKRKATSLLEHL 627
            L ++            L  L
Sbjct: 193 ALVRTEHSPFHEHVLGALCSL 213

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 38/238 (15%), Positives = 80/238 (33%), Gaps = 13/238 (5%)

Query: 361 LSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN-LLTTDDVMTQEHAVTAIL 419
             +   +ER  A+  +  L + + DN         + +LV   L       +  A   I 
Sbjct: 26  EQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 84

Query: 420 NLSIYENNKGLIML-AGAIPSIVQILRA-GSMEARENAAATLFSLSLLD-ENKIIIGASG 476
             S         +L  GA+  ++++L        R  A   +  L        +      
Sbjct: 85  TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD 144

Query: 477 AIPALVDLLQNGSTRGRKDAATALFNLCI-YMGNKGRAVRAGIISALLKMLTDSRNCMVD 535
               L+  +Q    + +  +A  L NL + +  +KG     G++  L+ ++    +   +
Sbjct: 145 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 204

Query: 536 EALTILSVLASNPEAKIAIVKASTI--PVLIVLLRTGLPRNKENAAAI-----LLSLC 586
             L  L  L ++    +   +   +    L+      L +++E    +     LL  C
Sbjct: 205 HVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 262

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 257 DFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE 303
             LC I  E  +D  I   G     S +  W +     CP  + +++
Sbjct: 23  FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 69

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 254 IPADFL----CPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP 309
            PA F+    C I   ++ DPV  +    + R  I R +      CP  +       L  
Sbjct: 16  FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75

Query: 310 NYVLRSLIS 318
              ++S ++
Sbjct: 76  P--VKSFLN 82

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 9e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 259 LCPISLELMRDPVIVA-TGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP 309
           LC IS ++ R PV+   +   +E+S +           P T + L    +  
Sbjct: 2   LCAISGKVPRRPVLSPKSRTIFEKSLL-EQYVKDTGNDPITNEPLSIEEIVE 52

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 7/53 (13%)

Query: 260 CPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYV 312
           C       + P ++    T     ++       + CP  Q       L  +  
Sbjct: 9   CQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQA---PWPLGADTP 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	636
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.88
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.84
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.81
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.75
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.74
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.72
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.35
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.34
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.3
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.22
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.81
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.73
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.66
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.57
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.56
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.53
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.39
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.35
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.33
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.3
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.17
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.13
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.05
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.84
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.82
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.8
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.75
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.56
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.5
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.42
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.39
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.37
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.37
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.32
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.14
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.08
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.9
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.56
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.36
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.71
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.4
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	87.44
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	85.17
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	82.02

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6e-23  Score=225.81  Aligned_cols=275  Identities=23%  Similarity=0.208  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhCcchH
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAD-AGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e-~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      ..++|.|++.|++.+..++..|+..+..+++++ ..|..+.. .|+++.|+.+|++ .+.++++.|+.+|.+|+.+++++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            357999999999999999999999999999754 45555554 5789999999975 67899999999999999999999


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      ..+.+.|+++.|+.+|++++++++.+|+++|.+|+...++ +..+.+.|+++.|+.+|+++++..+..++.+|.+|+..+
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999887664 556667799999999999999999999999999998765


Q ss_pred             -chHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          508 -GNKGRAVRAGIISALLKMLTD-SRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       508 -~n~~~lv~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                       +++..+.+.|+++.|+.++.. ....+...+..++.+++.+++++..+.+.|+++.|+.++.++++..+.+|+++|.++
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l  254 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence             457778889999999999965 567889999999999999999999999999999999999999999999999999998


Q ss_pred             hccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ......   .....|+++.|+.++.++++.++..|..+|.++..
T Consensus       255 s~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         255 SDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             HTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             cccccc---hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence            754322   11234779999999999999999999999999864

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.7e-22  Score=219.39  Aligned_cols=278  Identities=25%  Similarity=0.274  Sum_probs=246.6

Q ss_pred             CCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhC-cc
Q 006669          349 GDVVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIY-EN  426 (636)
Q Consensus       349 ~~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~-~~  426 (636)
                      ...+.++.|+..|.. .+.+.++.|+..|..++. +++++..+.+.|++|.|+.+|++++++++.+|+.+|.||+.+ +.
T Consensus        56 ~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~  134 (529)
T d1jdha_          56 RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG  134 (529)
T ss_dssp             TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccch
Confidence            345679999999964 678899999999999996 788999999999999999999999999999999999999985 55


Q ss_pred             hHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccC-CHHHHHHHHHHHHhhh
Q 006669          427 NKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNG-STRGRKDAATALFNLC  504 (636)
Q Consensus       427 ~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~-~~~~k~~A~~aL~nL~  504 (636)
                      .+..+.+.|+|+.|+.+|++++++.+..++.+|.+++..++ ++..+...|++++|+.+++.. ....+..++.++.+++
T Consensus       135 ~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls  214 (529)
T d1jdha_         135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  214 (529)
T ss_dssp             HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             hhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence            57778899999999999999999999999999999987654 566777789999999999765 4678889999999999


Q ss_pred             hccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 006669          505 IYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLS  584 (636)
Q Consensus       505 ~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  584 (636)
                      .+.+++..+++.|+++.|+.++.+.+..+...++++|.+++.......  ...|+++.|+.++.++++..++.|+.+|.+
T Consensus       215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~--~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchh--hhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999987544322  234789999999999999999999999999


Q ss_pred             hhccChHHHHHHHHcCChHHHHHhhh--cCCHHHHHHHHHHHHHhhc
Q 006669          585 LCKRDTENLACISRLGAVIPLTELTK--SGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       585 L~~~~~~~~~~i~~~G~i~~L~~Ll~--~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++.+++.++..+.+.|+++.|+.++.  ++.+.+++.|..+|+++..
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            99999999999999999999998875  4567889999999999864

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.1e-22  Score=209.86  Aligned_cols=283  Identities=22%  Similarity=0.224  Sum_probs=234.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLI  431 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I  431 (636)
                      +||.||+.|++++++.|..|+..|.+++.+++++|..+.+.|+||.|+++|+++++++++.|+.+|.||+. +++++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999996 67889999


Q ss_pred             HHhCChHHHHHHHhc-CcHHHHHHHHHHHHHccCCCch------------------------------------------
Q 006669          432 MLAGAIPSIVQILRA-GSMEARENAAATLFSLSLLDEN------------------------------------------  468 (636)
Q Consensus       432 ~~~G~I~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~------------------------------------------  468 (636)
                      .+.|+++.++.++.+ .+++++..|+++|.+++..+..                                          
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            999999999999865 4678888888888887654321                                          


Q ss_pred             --------------hHHHHh-cCchHHHHhhhcc----------------------------------------------
Q 006669          469 --------------KIIIGA-SGAIPALVDLLQN----------------------------------------------  487 (636)
Q Consensus       469 --------------~~~i~~-~g~i~~Lv~LL~~----------------------------------------------  487 (636)
                                    +..+.. .|+++.|+.++.+                                              
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence                          111112 2555655544421                                              


Q ss_pred             -----------------------------------------------------CCHHHHHHHHHHHHhhhhccc------
Q 006669          488 -----------------------------------------------------GSTRGRKDAATALFNLCIYMG------  508 (636)
Q Consensus       488 -----------------------------------------------------~~~~~k~~A~~aL~nL~~~~~------  508 (636)
                                                                           .++..+..+..++.+++....      
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                                                 123344455666777765443      


Q ss_pred             hHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCC------CHHHHHHHHHHH
Q 006669          509 NKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTG------LPRNKENAAAIL  582 (636)
Q Consensus       509 n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~------s~~~ke~A~~~L  582 (636)
                      .+..+.+.|+++.|++++.+.+..++..++.+|.+|+.+++++..+.+ ++++.++.+|...      ++.++..|+.+|
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L  401 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTV  401 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHH
Confidence            234445689999999999999999999999999999999999888765 6799999998642      357889999999


Q ss_pred             HHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHhhcccccccC
Q 006669          583 LSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHLRKLPQLQQV  636 (636)
Q Consensus       583 ~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l~~~~~~~~~  636 (636)
                      .+++..+++++..+.+.|+++.|+.++.+ +++.+++.|..+|.+|..+.+++++
T Consensus       402 ~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~~  456 (457)
T d1xm9a1         402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGV  456 (457)
T ss_dssp             HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSSC
T ss_pred             HHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhHhh
Confidence            99999999999999999999999999987 5788999999999999998888765

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.9e-21  Score=212.46  Aligned_cols=279  Identities=18%  Similarity=0.221  Sum_probs=250.9

Q ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchH
Q 006669          351 VVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNK  428 (636)
Q Consensus       351 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k  428 (636)
                      .+.++.|++.|++ .+.+.+..|++.|.+++..++.....+.+.|+++.++.+|.+++.++++.|+++|.||+. ++..+
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r  197 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR  197 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHH
Confidence            4579999999985 467889999999999998888888899999999999999999999999999999999998 56788


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCch-hHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhcc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN-KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYM  507 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~  507 (636)
                      ..+.+.|+++.++.++.+.+...+.+++++|.+++..... .......++++.|+.++.+.++.....++++|.+|+...
T Consensus       198 ~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~  277 (503)
T d1wa5b_         198 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP  277 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999999999999999876543 333344589999999999999999999999999999766


Q ss_pred             ch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 006669          508 GN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSL  585 (636)
Q Consensus       508 ~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  585 (636)
                      .+ ...+++.|+++.++.++.+++..+...|+.+|.+++.+.+ ....+.+.|+++.|..++.+.++..+..++++|.++
T Consensus       278 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl  357 (503)
T d1wa5b_         278 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI  357 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            54 5678889999999999999999999999999999998655 445667889999999999999999999999999999


Q ss_pred             hccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          586 CKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       586 ~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +.+++.....+.+.|+++.++.++.+++..++..|.++|.++..
T Consensus       358 ~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  401 (503)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998864

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.2e-21  Score=205.27  Aligned_cols=280  Identities=20%  Similarity=0.222  Sum_probs=241.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-hHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhh-CcchH
Q 006669          352 VAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTD-NRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSI-YENNK  428 (636)
Q Consensus       352 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~-~~~~k  428 (636)
                      ++|+.+++.|.+++++.+..|+..++++...+.. ....+.+.|++|.|+++|++ +++.++..|+.+|.|++. .++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            4599999999999999999999999987643322 25678899999999999965 467899999999999987 45678


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccCC-----HHHHHHHHHHHHh
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNGS-----TRGRKDAATALFN  502 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~-----~~~k~~A~~aL~n  502 (636)
                      ..+.+.|+++.++.+|.+++++.++.|+++|.+++..++ .+..+...|+++.|+.++...+     ......+++++.+
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999988764 5677778899999999998653     3456677888999


Q ss_pred             hhhccchH-HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh-hHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 006669          503 LCIYMGNK-GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE-AKIAIVKASTIPVLIVLLRTGLPRNKENAAA  580 (636)
Q Consensus       503 L~~~~~n~-~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~  580 (636)
                      ++...... ......++++.|+.++.+.++.++..++++|.+++.++. ....+...|+++.|+.++.++++..+..|+.
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            98766443 334567899999999999999999999999999998765 4556677899999999999999999999999


Q ss_pred             HHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          581 ILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       581 ~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      +|.+++.+++.....+.+.|+++.|..++.+.++.+++.|.++|.++....
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~  303 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR  303 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcccc
Confidence            999999988888889999999999999999999999999999999997643

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4e-21  Score=204.44  Aligned_cols=280  Identities=18%  Similarity=0.213  Sum_probs=245.8

Q ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchH
Q 006669          351 VVAIEALVRKLSS-RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNK  428 (636)
Q Consensus       351 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k  428 (636)
                      .+.++.|++.|++ .++++|..|+..|.+++..+++.+..+.+.|+++.|+.+|.+++..+++.|+.+|.|++. ++..+
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~  134 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  134 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence            3579999999965 467889999999999999888999999999999999999999999999999999999998 45667


Q ss_pred             HHHHHhCChHHHHHHHhcCc-----HHHHHHHHHHHHHccCCCchhH-HHHhcCchHHHHhhhccCCHHHHHHHHHHHHh
Q 006669          429 GLIMLAGAIPSIVQILRAGS-----MEARENAAATLFSLSLLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAATALFN  502 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~n  502 (636)
                      ..+.+.|+++.++.++...+     ......+++++.+++....... .....+.++.|+.++.++++..+..++++|.+
T Consensus       135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~  214 (434)
T d1q1sc_         135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY  214 (434)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcc
Confidence            88889999999999997652     3556778889999987654333 33445789999999999999999999999999


Q ss_pred             hhhccch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 006669          503 LCIYMGN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAA  580 (636)
Q Consensus       503 L~~~~~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~  580 (636)
                      |+..+.. ...+.+.|+++.|++++.+++..++..|+.+|.+++.. ++.+..+.+.|+++.|+.++.+.++..++.|++
T Consensus       215 l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~  294 (434)
T d1q1sc_         215 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW  294 (434)
T ss_dssp             HTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred             cchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHH
Confidence            9887654 45566789999999999999999999999999999885 456778888999999999999999999999999


Q ss_pred             HHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          581 ILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       581 ~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      +|.+++.++.+....+.+.|+++.++.++.+++..++..|.++|.++...
T Consensus       295 ~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~  344 (434)
T d1q1sc_         295 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  344 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence            99999998888888999999999999999999999999999999988643

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.7e-20  Score=204.83  Aligned_cols=279  Identities=19%  Similarity=0.220  Sum_probs=246.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHh-ccChhhHHHHHhcCCHHHHHHhhcC-CChHHHHHHHHHHHHhhhC-cchHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLS-KRSTDNRIIIADAGAIPVLVNLLTT-DDVMTQEHAVTAILNLSIY-ENNKG  429 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La-~~~~~~r~~i~e~g~i~~Lv~lL~s-~d~~~~e~Av~aL~nLs~~-~~~k~  429 (636)
                      .++.+++.+.+.+.+.+..|+..++.+. ..+......+.+.|++|.|+.+|++ .+..++..|+++|.|++.. +....
T Consensus        77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~  156 (503)
T d1wa5b_          77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  156 (503)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4888999999999999999999999865 3444446678899999999999985 4678999999999999984 45566


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC-chhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLD-ENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG  508 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~  508 (636)
                      .+.+.|+++.++.+|.+++.++++.|+++|.||+..+ +++..+...|++++|+.++.+.+...+..++++|.||+.+..
T Consensus       157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~  236 (503)
T d1wa5b_         157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK  236 (503)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCc
Confidence            7778999999999999999999999999999998764 678888889999999999999999999999999999998764


Q ss_pred             h-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          509 N-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       509 n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      . .......++++.|+.++.+.+..+...++++|.+++.. ++....+.+.|+++.++.++.++++.++..|+.+|.+++
T Consensus       237 ~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~  316 (503)
T d1wa5b_         237 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  316 (503)
T ss_dssp             SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHH
Confidence            4 33445578999999999999999999999999999975 445677889999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhccc
Q 006669          587 KRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLP  631 (636)
Q Consensus       587 ~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~  631 (636)
                      .++......+.+.|+++.|..++.++++.+++.+.++|.++....
T Consensus       317 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         317 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN  361 (503)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Confidence            988888888899999999999999999999999999999997543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=7.3e-22  Score=160.58  Aligned_cols=76  Identities=64%  Similarity=1.125  Sum_probs=72.5

Q ss_pred             CCCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcccc
Q 006669          252 LIIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNIE  327 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~~  327 (636)
                      +.+|++|.||||+++|+|||+++|||+|||.||++|+..++.+||.|+.++...++.||++||++|++|+++||++
T Consensus         3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e   78 (78)
T d1t1ha_           3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence            4789999999999999999999999999999999999988889999999999999999999999999999999874

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=5.5e-21  Score=156.06  Aligned_cols=74  Identities=30%  Similarity=0.458  Sum_probs=70.7

Q ss_pred             CCCCcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhccc
Q 006669          253 IIPADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHNI  326 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~~  326 (636)
                      .+|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|++++...++.||..++++|++|+.+||.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~   76 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW   76 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence            68999999999999999999999999999999999988888999999999999999999999999999998874

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.1e-19  Score=150.10  Aligned_cols=73  Identities=30%  Similarity=0.427  Sum_probs=67.7

Q ss_pred             CCCCCcccCccchhhccCCeecCCCc-hhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHhhcc
Q 006669          252 LIIPADFLCPISLELMRDPVIVATGQ-TYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCTMHN  325 (636)
Q Consensus       252 ~~~p~~f~CPis~~~m~dPv~~~~G~-t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~n~  325 (636)
                      ..+|++|.||||+++|+|||++++|| ||||.||++|+.. +.+||.|++++...+++||..+|+.|+.|++.+.
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence            47899999999999999999999875 8999999999975 5689999999999999999999999999998865

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-16  Score=160.36  Aligned_cols=191  Identities=17%  Similarity=0.195  Sum_probs=168.8

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHH
Q 006669          365 SVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVN-LLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQ  442 (636)
Q Consensus       365 ~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~-lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~  442 (636)
                      +.+.+..|+..|..|+. +.+++..+...|+++.|+. +|.+++++++..|+.+|.+++. ++..+..+.+.|+++.|+.
T Consensus        30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            56778899999999995 7888999999999999986 7888999999999999999998 5677888999999999999


Q ss_pred             HHhcC-cHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhc-cchHHHHHHhchH
Q 006669          443 ILRAG-SMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIY-MGNKGRAVRAGII  519 (636)
Q Consensus       443 lL~~~-~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~-~~n~~~lv~~g~v  519 (636)
                      +|.+. +++++..++++|.+++.... ++..+...|+++.|+.++++++...+..++.+|.+|+.. ++++..+++.|++
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            99764 78999999999999987655 566777889999999999999999999999999999865 5778899999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHh
Q 006669          520 SALLKMLTDSRNCMVDEALTILSVLASN-PEAKIAIVK  556 (636)
Q Consensus       520 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~  556 (636)
                      +.|+++|.+++..+++.|+.+|.+|+.. +.....+..
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999984 455555544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.2e-16  Score=159.79  Aligned_cols=194  Identities=20%  Similarity=0.145  Sum_probs=173.4

Q ss_pred             CCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHH-HHhcCcHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHH
Q 006669          405 TDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQ-ILRAGSMEARENAAATLFSLSLLDE-NKIIIGASGAIPALV  482 (636)
Q Consensus       405 s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv  482 (636)
                      +.+.+.+..|+.+|.+|+.+.+++..+...|++++++. ++++++++++..|+.+|.+++.++. .+..+.+.|+++.|+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            34567788999999999998899999999999999886 6788899999999999999998654 677788889999999


Q ss_pred             hhhcc-CCHHHHHHHHHHHHhhhhcc-chHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCc
Q 006669          483 DLLQN-GSTRGRKDAATALFNLCIYM-GNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLAS-NPEAKIAIVKAST  559 (636)
Q Consensus       483 ~LL~~-~~~~~k~~A~~aL~nL~~~~-~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~  559 (636)
                      .++.+ .++.++..++++|.+|+.+. +++..+++.|+++.|++++.+.+..++..++.+|.+++. +++.+..+.+.|+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            99975 57889999999999999766 457788899999999999999999999999999999986 6888999999999


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHH
Q 006669          560 IPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISR  598 (636)
Q Consensus       560 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~  598 (636)
                      ++.|+.+|.++++..++.|+.+|.+|+..++.....+..
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999988887777654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.3e-16  Score=160.84  Aligned_cols=239  Identities=20%  Similarity=0.198  Sum_probs=188.3

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCC-CchhHH
Q 006669          394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLL-DENKII  471 (636)
Q Consensus       394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~  471 (636)
                      +.||.||++|++++++++..|+.+|.||+. ++++|..+.+.|+|+.|+++|++++++++..|+++|.+|+.. ++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            469999999999999999999999999997 788999999999999999999999999999999999999865 568889


Q ss_pred             HHhcCchHHHHhhhcc-CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHh---------------cCCCHHHHH
Q 006669          472 IGASGAIPALVDLLQN-GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKML---------------TDSRNCMVD  535 (636)
Q Consensus       472 i~~~g~i~~Lv~LL~~-~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL---------------~~~~~~~~~  535 (636)
                      +.+.|+++.|+.++.+ .++..+..|+++|.+++.....+......|..+.+..++               ...+..+..
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999998865 578899999999999999888877777665444433332               224667788


Q ss_pred             HHHHHHHHHhcChhhHHHHHh-cCcHHHHHHHH-----------------------------------------------
Q 006669          536 EALTILSVLASNPEAKIAIVK-ASTIPVLIVLL-----------------------------------------------  567 (636)
Q Consensus       536 ~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL-----------------------------------------------  567 (636)
                      .++.+|.+++.+++++..+.. .|+++.|+.++                                               
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            888888888877666554433 34445544433                                               


Q ss_pred             ---------------------------------------------------cC-CCHHHHHHHHHHHHHhhccChH----
Q 006669          568 ---------------------------------------------------RT-GLPRNKENAAAILLSLCKRDTE----  591 (636)
Q Consensus       568 ---------------------------------------------------~~-~s~~~ke~A~~~L~~L~~~~~~----  591 (636)
                                                                         .. .++..++.+..++..++.....    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                               22 2345556666777776654431    


Q ss_pred             -HHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcccc
Q 006669          592 -NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKLPQ  632 (636)
Q Consensus       592 -~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~~~  632 (636)
                       ....+.+.|+++.|+.++.++++.++..|..+|.++.+..+
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~  363 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh
Confidence             22334568999999999999999999999999999987554

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=7.1e-14  Score=104.88  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=46.9

Q ss_pred             ccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccc
Q 006669          258 FLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPN  310 (636)
Q Consensus       258 f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  310 (636)
                      +.||||+++|+|||++ .|||+|||.||.+|+.. +.+||.|++++...+++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            4799999999999987 58999999999999986 5689999999999888764

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.4e-13  Score=110.68  Aligned_cols=62  Identities=19%  Similarity=0.323  Sum_probs=52.7

Q ss_pred             CcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcc-cchhHHHHH
Q 006669          256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLT-PNYVLRSLI  317 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~-pn~~lr~lI  317 (636)
                      ++|.||||+++|.|||+++|||+||+.||++|++.++.+||.|+.++...++. |..++.+.+
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            34689999999999999999999999999999987778999999999877664 555555443

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.6e-13  Score=114.49  Aligned_cols=68  Identities=18%  Similarity=0.402  Sum_probs=59.7

Q ss_pred             CCcccCccchhhccCCeecCCCchhhhHHHHHHHcCC--CCCCCCCCcccccCCcccchhHHHHHHHHHh
Q 006669          255 PADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCG--NVTCPKTQQKLEHLTLTPNYVLRSLISQWCT  322 (636)
Q Consensus       255 p~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  322 (636)
                      -+.|.||||+++|.|||+++|||+||+.||.+|+...  ...||.|+.++...++.+|+.++++++++.+
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999653  3579999999998999999988888887743

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.9e-13  Score=110.45  Aligned_cols=66  Identities=18%  Similarity=0.287  Sum_probs=58.8

Q ss_pred             CCCcccCccchhhccCCeec-CCCchhhhHHHHHHHcCCCCCCCCCCcccccCCcccchhHHHHHHHHHh
Q 006669          254 IPADFLCPISLELMRDPVIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTPNYVLRSLISQWCT  322 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dPv~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  322 (636)
                      ++++|.||||.++|.|||++ +|||+||+.||.+|+.   ..||.|+.++...++.+|..++.+|+.+..
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchhhCcccHHHHHHHHHHHH
Confidence            46778999999999999975 8999999999999984   459999999999999999999999987653

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7e-11  Score=94.77  Aligned_cols=49  Identities=22%  Similarity=0.375  Sum_probs=45.0

Q ss_pred             ccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCC
Q 006669          258 FLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLT  306 (636)
Q Consensus       258 f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~  306 (636)
                      ..||||++.+.|||+++|||+||+.||.+|+..++.+||.|++.+....
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            4699999999999999999999999999999877789999999987644

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.5e-10  Score=84.04  Aligned_cols=50  Identities=16%  Similarity=0.172  Sum_probs=42.9

Q ss_pred             CcccCccchhhccCCeecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCccc
Q 006669          256 ADFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTLTP  309 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  309 (636)
                      +.+.||||++.+.||++++|||+|++.||++|    ..+||.|+++++...-.|
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence            34689999999999999999999999999865    568999999887655444

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.5e-09  Score=82.09  Aligned_cols=52  Identities=21%  Similarity=0.324  Sum_probs=43.0

Q ss_pred             CcccCccchhhccC-C----eecCCCchhhhHHHHHHHcCCCCCCCCCCcccccCCc
Q 006669          256 ADFLCPISLELMRD-P----VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEHLTL  307 (636)
Q Consensus       256 ~~f~CPis~~~m~d-P----v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l  307 (636)
                      ++..||||++.+.. |    ++.+|||+|++.||++|+..++.+||.|++++....+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            56789999987633 2    5679999999999999998777889999998866544

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2e-06  Score=93.27  Aligned_cols=222  Identities=15%  Similarity=0.142  Sum_probs=151.7

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhc
Q 006669          396 IPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGAS  475 (636)
Q Consensus       396 i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~  475 (636)
                      ++.+..++..++..+++.|+.+|..+........  .+.-.+|.+..+..+.....+..|+..+..+...-....   ..
T Consensus        89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~--~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---~~  163 (588)
T d1b3ua_          89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSD--LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---KA  163 (588)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---HH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH---HH
Confidence            4555566666777778888887777765322211  122234444445555556666666666666643322111   12


Q ss_pred             CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Q 006669          476 GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV  555 (636)
Q Consensus       476 g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~  555 (636)
                      ..++.+..++++.++.+++.++.++..++..-+.  .......++.+..++.+.+..++..|+.+|..++..-+..  ..
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~~  239 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DL  239 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HH
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--HH
Confidence            2467788888889999999999999998865433  2334567888999999999999999999999887632211  11


Q ss_pred             hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          556 KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ....++.+..++.+.++++|..++.+|..++..-+.   .......++.+..++.+.++.+|..|...+..+.+
T Consensus       240 ~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~  310 (588)
T d1b3ua_         240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            223578888888888999999999999988753221   22334578899999999999999999998877654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2.4e-06  Score=82.75  Aligned_cols=229  Identities=12%  Similarity=0.068  Sum_probs=148.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH
Q 006669          354 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML  433 (636)
Q Consensus       354 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~  433 (636)
                      .+.|++.|+++++.++..|+..|..+..           ..+++.|+.+++++++.++..|+.+|..+.........+  
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~--   87 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV--   87 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH--
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch--
Confidence            5678999999999999999999887752           135799999999999999999999999987644333322  


Q ss_pred             hCChHHHH-HHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHH
Q 006669          434 AGAIPSIV-QILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGR  512 (636)
Q Consensus       434 ~G~I~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~  512 (636)
                         ++.+. .++++.++.++..|+.+|..+........    ...++.+...+.+.++.++..++.++.....       
T Consensus        88 ---~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-------  153 (276)
T d1oyza_          88 ---FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND-------  153 (276)
T ss_dssp             ---HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred             ---HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhhcch-------
Confidence               23333 34677789999999999988764332111    1345667777777777788777777765431       


Q ss_pred             HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh----------------hHH-------HHHhcCcHHHHHHHHcC
Q 006669          513 AVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPE----------------AKI-------AIVKASTIPVLIVLLRT  569 (636)
Q Consensus       513 lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~----------------~~~-------~i~~~g~i~~Lv~lL~~  569 (636)
                         ...++.+..++.+.+......+..++..+.....                .+.       .+....+++.|+..+.+
T Consensus       154 ---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d  230 (276)
T d1oyza_         154 ---KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK  230 (276)
T ss_dssp             ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS
T ss_pred             ---HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhCC
Confidence               2233444444444444433333333333221110                000       01123468888888864


Q ss_pred             CCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHH
Q 006669          570 GLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLE  625 (636)
Q Consensus       570 ~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~  625 (636)
                        +.++..|+.+|..+..           .++++.|..++.+ .+..++..|...|+
T Consensus       231 --~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         231 --NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             --SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             --hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence              3467778888877652           3578888887766 46788888877764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2e-06  Score=93.39  Aligned_cols=261  Identities=15%  Similarity=0.114  Sum_probs=183.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc--chHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE--NNKGL  430 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~--~~k~~  430 (636)
                      .++.+...+...+..+|..|+..+..++...+..  . .+.-.+|.+..+..++....+..|+.++..+....  ..+..
T Consensus        88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~--~-~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~~  164 (588)
T d1b3ua_          88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE  164 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH--H-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4666777778888999999999999988643322  1 22334565566666666667777777777776532  22322


Q ss_pred             HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccchH
Q 006669          431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNK  510 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~  510 (636)
                           .++.+..++.+.++.+|..|+.++..++..-...  ......++.+..++.+.++.++..|+.++..++..-+..
T Consensus       165 -----l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~  237 (588)
T d1b3ua_         165 -----LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE  237 (588)
T ss_dssp             -----HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred             -----HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence                 3677788888899999999999999987543321  223456778888889999999999999999887543322


Q ss_pred             HHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh
Q 006669          511 GRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT  590 (636)
Q Consensus       511 ~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  590 (636)
                        .....+++.+..++.+.+..++..++.+|..++..-..  .+.....++.+..++.+.++.+|..|+..|..++..-+
T Consensus       238 --~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~  313 (588)
T d1b3ua_         238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             --HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence              12234788889999999999999999999998763221  22334678999999999999999999999988876432


Q ss_pred             H-HHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHh
Q 006669          591 E-NLACISRLGAVIPLTELTKSGTERAKRKATSLLEHL  627 (636)
Q Consensus       591 ~-~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l  627 (636)
                      . ......-...++.+..++.+.++.+|..+...+..+
T Consensus       314 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~  351 (588)
T d1b3ua_         314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL  351 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred             hhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhh
Confidence            1 122222234567777777777777777766555443

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.53  E-value=1.5e-08  Score=78.41  Aligned_cols=43  Identities=33%  Similarity=0.563  Sum_probs=38.6

Q ss_pred             CccchhhccCCee-cCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          260 CPISLELMRDPVI-VATGQTYERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       260 CPis~~~m~dPv~-~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      ||||++.+.+|++ ++|||+|+..||++|+.. +.+||.|+.++.
T Consensus         8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            9999999988865 899999999999999985 578999998764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.5e-08  Score=70.43  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             cCccchhhccC----CeecCCCchhhhHHHHHHHcCCCCCCCCCCccccc
Q 006669          259 LCPISLELMRD----PVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLEH  304 (636)
Q Consensus       259 ~CPis~~~m~d----Pv~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~~  304 (636)
                      -||||++-|.+    +++.+|||+|++.||.+|+..++.+||.||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            49999998843    34468999999999999998777789999998764

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.30  E-value=1.5e-07  Score=69.32  Aligned_cols=48  Identities=17%  Similarity=0.507  Sum_probs=39.3

Q ss_pred             CCCcccCccchhhccCC---eec-CCCchhhhHHHHHHHcCCCCCCCCCCccc
Q 006669          254 IPADFLCPISLELMRDP---VIV-ATGQTYERSYIQRWIDCGNVTCPKTQQKL  302 (636)
Q Consensus       254 ~p~~f~CPis~~~m~dP---v~~-~~G~t~~r~~I~~w~~~~~~~cP~~~~~l  302 (636)
                      +-++..||||++-+.+.   +.+ +|||.|...||.+|+.. +.+||.||+++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            34667899999999653   334 69999999999999975 67899999865

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=9.6e-05  Score=76.81  Aligned_cols=275  Identities=12%  Similarity=0.118  Sum_probs=186.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc-CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHH
Q 006669          355 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADA-GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIML  433 (636)
Q Consensus       355 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~-g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~  433 (636)
                      ..+...+.+.+......+...+..++.....+....-.. .....+-.+..+.+...+.-++..|-.|...++.|..+.+
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~  204 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWL  204 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHH
Confidence            344555666666666677777777765443332221111 1223333344667888889999999999888888888754


Q ss_pred             --hCChHHHHHHHhcC-----------------cHHHHHHHHHHHHHccCCCchhHHHHhc--CchHHHHhhhccC-CHH
Q 006669          434 --AGAIPSIVQILRAG-----------------SMEARENAAATLFSLSLLDENKIIIGAS--GAIPALVDLLQNG-STR  491 (636)
Q Consensus       434 --~G~I~~Lv~lL~~~-----------------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~LL~~~-~~~  491 (636)
                        ...+++++++|+..                 ....+.+++-+++-||+..+....+...  +.++.|+++++.. -..
T Consensus       205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEK  284 (477)
T d1ho8a_         205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEK  284 (477)
T ss_dssp             THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHH
T ss_pred             cccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence              45678888887541                 2467899999999999988887777765  4589999999765 478


Q ss_pred             HHHHHHHHHHhhhhccc--h----HHHHHHhchHHHHHHHhcC--CCHHHHHHHHHHHHH-------HhcC---------
Q 006669          492 GRKDAATALFNLCIYMG--N----KGRAVRAGIISALLKMLTD--SRNCMVDEALTILSV-------LASN---------  547 (636)
Q Consensus       492 ~k~~A~~aL~nL~~~~~--n----~~~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~-------La~~---------  547 (636)
                      +.+-++.+|.|++....  +    ...++..++++.+-.+...  .++++.+..-.+-..       +++.         
T Consensus       285 vvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~S  364 (477)
T d1ho8a_         285 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS  364 (477)
T ss_dssp             HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence            88889999999986532  2    3345566666655444433  566665543222111       2221         


Q ss_pred             ------hhhH-HHHH--------hc--CcHHHHHHHHcC----------CCHHHHHHHHHHHHHhhccChHHHHHHHHcC
Q 006669          548 ------PEAK-IAIV--------KA--STIPVLIVLLRT----------GLPRNKENAAAILLSLCKRDTENLACISRLG  600 (636)
Q Consensus       548 ------~~~~-~~i~--------~~--g~i~~Lv~lL~~----------~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G  600 (636)
                            |..+ +.+.        +.  ..+..|+++|.+          .++.+-.-|+.=+..+|.+.|..+..+.+.|
T Consensus       365 g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg  444 (477)
T d1ho8a_         365 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG  444 (477)
T ss_dssp             TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred             CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcC
Confidence                  2222 1222        11  258889999962          2355566677788899999999999999999


Q ss_pred             ChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          601 AVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       601 ~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +=..+++++.+.++.+|..|..++..+-.
T Consensus       445 ~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         445 GKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998886643

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=0.00018  Score=68.81  Aligned_cols=206  Identities=15%  Similarity=0.082  Sum_probs=137.8

Q ss_pred             cCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHH
Q 006669          393 AGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIII  472 (636)
Q Consensus       393 ~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i  472 (636)
                      ....+.|+++|.++++.++..|+.+|..+..          ..+++.++.++++.++.++..|+.+|..+.........+
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~   87 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV   87 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch
Confidence            4567789999999999999999999976642          235799999999999999999999999986554332222


Q ss_pred             HhcCchHHHHh-hhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Q 006669          473 GASGAIPALVD-LLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK  551 (636)
Q Consensus       473 ~~~g~i~~Lv~-LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~  551 (636)
                           ++.|.. ++.+.++.++..|+.+|.+++.......    ..+++.+...+.+.+..++..++.++....      
T Consensus        88 -----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~------  152 (276)
T d1oyza_          88 -----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIN------  152 (276)
T ss_dssp             -----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred             -----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhhcc------
Confidence                 233443 4567789999999999999876543322    246778888888888888877777665432      


Q ss_pred             HHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHH-------------------HH---HcCChHHHHHhh
Q 006669          552 IAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLAC-------------------IS---RLGAVIPLTELT  609 (636)
Q Consensus       552 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~-------------------i~---~~G~i~~L~~Ll  609 (636)
                          ....++.+..++....+..+..+..++.............                   ..   ...+++.|+..+
T Consensus       153 ----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l  228 (276)
T d1oyza_         153 ----DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL  228 (276)
T ss_dssp             ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             ----hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHh
Confidence                2244555555555555555555555444443322211110                   11   123577777777


Q ss_pred             hcCCHHHHHHHHHHHHHhhc
Q 006669          610 KSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       610 ~~g~~~~k~kA~~lL~~l~~  629 (636)
                      .+  +.++..|..+|..+..
T Consensus       229 ~d--~~vr~~a~~aL~~ig~  246 (276)
T d1oyza_         229 KK--NTVYDDIIEAAGELGD  246 (276)
T ss_dssp             TS--SSCCHHHHHHHHHHCC
T ss_pred             CC--hHHHHHHHHHHHHcCC
Confidence            64  3477888888887753

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=1.1e-06  Score=74.95  Aligned_cols=52  Identities=12%  Similarity=0.239  Sum_probs=41.6

Q ss_pred             CCCCcccCccchhhccCC------------------eecCCCchhhhHHHHHHHcC----CCCCCCCCCccccc
Q 006669          253 IIPADFLCPISLELMRDP------------------VIVATGQTYERSYIQRWIDC----GNVTCPKTQQKLEH  304 (636)
Q Consensus       253 ~~p~~f~CPis~~~m~dP------------------v~~~~G~t~~r~~I~~w~~~----~~~~cP~~~~~l~~  304 (636)
                      ..+.+..||||++-|.++                  .+++|||.|...||.+|+..    ++.+||.||..+..
T Consensus        21 ~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            345566899999998654                  45899999999999999964    35689999987643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00021  Score=81.12  Aligned_cols=271  Identities=12%  Similarity=0.087  Sum_probs=158.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh--CcchHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI--YENNKGL  430 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~--~~~~k~~  430 (636)
                      .++.+.+.+.+.++..|..|+..+..++....+.-.... ...++.|+..|+++++.++..|+++|..++.  .+.....
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            345555667788999999999999988865432211111 1357788888998999999999999998875  1222222


Q ss_pred             HHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh--cCchHHHHhhhccCCHHHHHHHHHHHHhhhhc--
Q 006669          431 IMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA--SGAIPALVDLLQNGSTRGRKDAATALFNLCIY--  506 (636)
Q Consensus       431 I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~--  506 (636)
                      . -...++.++..+.+.++.++..|+.+|.++......  .+..  ...++.|+..+.....+....+..++..++..  
T Consensus       475 ~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~--~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         475 Y-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             H-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT--SSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHG
T ss_pred             h-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence            2 245678888888888999999999999988632110  0110  12345555555555555444444444443311  


Q ss_pred             -cchHHHHHHhchHHHHHHHhc------------------------C---------------------------------
Q 006669          507 -MGNKGRAVRAGIISALLKMLT------------------------D---------------------------------  528 (636)
Q Consensus       507 -~~n~~~lv~~g~v~~Lv~lL~------------------------~---------------------------------  528 (636)
                       .-++..+++ ..++.+.+...                        .                                 
T Consensus       552 ~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  630 (888)
T d1qbkb_         552 HHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ  630 (888)
T ss_dssp             GGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             ccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence             111111111 01111111110                        0                                 


Q ss_pred             ---CCHHHHHHHHHHHHHHhcC--hhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChH
Q 006669          529 ---SRNCMVDEALTILSVLASN--PEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDTENLACISRLGAVI  603 (636)
Q Consensus       529 ---~~~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~  603 (636)
                         .+......++.++..+...  +.....+.....++.+...+.+.++.+++.|..++..++...+........ ..++
T Consensus       631 ~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~  709 (888)
T d1qbkb_         631 YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMP  709 (888)
T ss_dssp             SCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHH
Confidence               1222333333344433321  111222233445677778888888999999999998887655443322221 2456


Q ss_pred             HHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          604 PLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       604 ~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      .|..-+.+....++..|.+++..|..
T Consensus       710 ~l~~~L~~~~~~v~~~a~~~ig~ia~  735 (888)
T d1qbkb_         710 ILGTNLNPEFISVCNNATWAIGEISI  735 (888)
T ss_dssp             HHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence            67777777788899999988876653

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.80  E-value=4.8e-06  Score=62.15  Aligned_cols=48  Identities=21%  Similarity=0.340  Sum_probs=41.2

Q ss_pred             CcccCccchhhccCCeecCCC-----chhhhHHHHHHHc-CCCCCCCCCCcccc
Q 006669          256 ADFLCPISLELMRDPVIVATG-----QTYERSYIQRWID-CGNVTCPKTQQKLE  303 (636)
Q Consensus       256 ~~f~CPis~~~m~dPv~~~~G-----~t~~r~~I~~w~~-~~~~~cP~~~~~l~  303 (636)
                      +...|+||++-+.++.+.+++     |.|.+.||++|+. .++.+||.|+.++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            456799999999999888875     9999999999996 36789999998764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.00017  Score=73.72  Aligned_cols=274  Identities=13%  Similarity=0.102  Sum_probs=165.3

Q ss_pred             HHHHHHHHhcC--CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhCcchH
Q 006669          353 AIEALVRKLSS--RSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIYENNK  428 (636)
Q Consensus       353 ~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~~~~k  428 (636)
                      .++.+++.+.+  .+...+..++..+..+..........-.-...++.++..+.+.  +..++..|+.++.++.......
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  207 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  207 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh
Confidence            57888888865  3456666777777766543221111001112467777777654  4678889999998887532211


Q ss_pred             --HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhH-HHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669          429 --GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKI-IIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI  505 (636)
Q Consensus       429 --~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~-~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~  505 (636)
                        .........+.+...+.+++++.+..++.+|..+........ ........+.+...+.+.++..+..++..+..++.
T Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         208 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence              111122345566666777889999999999988854322110 00111222334455566678888888888877753


Q ss_pred             ccc---------------------hHHHHHHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHHhc
Q 006669          506 YMG---------------------NKGRAVRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIVKA  557 (636)
Q Consensus       506 ~~~---------------------n~~~lv~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~~~  557 (636)
                      ...                     ......-...++.+.+.+.+       .+...+..|..++..++......  +. .
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~  364 (458)
T d1ibrb_         288 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-P  364 (458)
T ss_dssp             HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-H
T ss_pred             HHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh--hh-h
Confidence            211                     01111123355666666542       22346667777777776532211  11 1


Q ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          558 STIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       558 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      ..++.+...+.+.++..|+.|+.+|..++.... ...... -...++.|...+++.++++|..|.++|..+.++
T Consensus       365 ~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         365 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            245666677778889999999999998885432 211111 234688899999999999999999999888654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.3e-05  Score=90.55  Aligned_cols=270  Identities=11%  Similarity=0.088  Sum_probs=171.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHH
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIM  432 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~  432 (636)
                      .+..|++.+.+.|++.|..|+..|...-..+...-..-.....++.|+++|...++++|..|+.+|..|...-....  +
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H
Confidence            57889999999999999999988876432211000000011246889999999999999999999999876432211  1


Q ss_pred             HhCChHHHHHHHhcCcHHHHHHHHHHHHHccC----CCchh--HHHHhcCchHHHHhhhcc-CCHHHHHHHHHHHHhhhh
Q 006669          433 LAGAIPSIVQILRAGSMEARENAAATLFSLSL----LDENK--IIIGASGAIPALVDLLQN-GSTRGRKDAATALFNLCI  505 (636)
Q Consensus       433 ~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~~--~~i~~~g~i~~Lv~LL~~-~~~~~k~~A~~aL~nL~~  505 (636)
                       ...++.|+..+.+++...+..+..+|..+..    ...+.  ........++.+...+.. .+..++..++.+|..+..
T Consensus        82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence             2235666666666666777777666655421    11111  011111233444444433 357788889999988865


Q ss_pred             ccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Q 006669          506 YMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIVLLR-TGLPRNKENAAAILLS  584 (636)
Q Consensus       506 ~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~  584 (636)
                      ..+.--.-....+++.|+..+.+.+..++..|+.+|..++..-...   .-...++.++..+. +.+...+..++.++..
T Consensus       161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~  237 (1207)
T d1u6gc_         161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAA  237 (1207)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            5432111112347788888898899999999999999998743221   11245777776664 3445556667778877


Q ss_pred             hhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          585 LCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       585 L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ++...+...... -..+++.+...+.+.++.+++.|..++..+..
T Consensus       238 l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         238 ISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVR  281 (1207)
T ss_dssp             HHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            776544321110 13467888888888999999999998887754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.0003  Score=79.81  Aligned_cols=147  Identities=12%  Similarity=0.045  Sum_probs=92.5

Q ss_pred             hHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHh-
Q 006669          478 IPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVK-  556 (636)
Q Consensus       478 i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~-  556 (636)
                      ++.+...+++.++.++..|..++..++..-...-.-.-...++.+++.|.+....++..|++++..++..-..  .+.. 
T Consensus       667 ~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~--~~~py  744 (888)
T d1qbkb_         667 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQPY  744 (888)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGG--GGGGG
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH--Hhhhh
Confidence            4444555666677888888888887765432211111123677788888777888999999999988863221  1111 


Q ss_pred             -cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhc-CCHHHHHHHHHHHHHh
Q 006669          557 -ASTIPVLIVLLRTG--LPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKS-GTERAKRKATSLLEHL  627 (636)
Q Consensus       557 -~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~-g~~~~k~kA~~lL~~l  627 (636)
                       ...++.|+.++.+.  ...++++++.+|..|+...|+.....+. ..++.++.-+.. .+..-|+.|-.-+..+
T Consensus       745 ~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~  818 (888)
T d1qbkb_         745 IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTM  818 (888)
T ss_dssp             SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence             24678889999764  3668999999999998877765432222 245555555544 4555565555544433

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.3e-05  Score=63.16  Aligned_cols=32  Identities=19%  Similarity=0.484  Sum_probs=28.0

Q ss_pred             eecCCCchhhhHHHHHHHcCCCCCCCCCCcccc
Q 006669          271 VIVATGQTYERSYIQRWIDCGNVTCPKTQQKLE  303 (636)
Q Consensus       271 v~~~~G~t~~r~~I~~w~~~~~~~cP~~~~~l~  303 (636)
                      +..+|||.|...||.+|+.. +.+||.|+++..
T Consensus        53 ~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          53 AWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             EEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             EEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            45799999999999999986 578999998764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00092  Score=77.83  Aligned_cols=272  Identities=13%  Similarity=0.083  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-Cc-ch-
Q 006669          351 VVAIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YE-NN-  427 (636)
Q Consensus       351 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~-~~-  427 (636)
                      ...++.|++.|...++++|..|+++|..++..-++...    ...++.|+..+.+++...+..+..+|..+.. .+ .. 
T Consensus        44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~  119 (1207)
T d1u6gc_          44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  119 (1207)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccc
Confidence            34788999999999999999999999999876544321    1346778887777787888888777776643 11 11 


Q ss_pred             ----HHHHHHhCChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHh
Q 006669          428 ----KGLIMLAGAIPSIVQILRAG-SMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFN  502 (636)
Q Consensus       428 ----k~~I~~~G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~n  502 (636)
                          ...+ -...++.+...+.+. ++.++..|..+|..+......-..-.....++.|+..+.+..+.+++.|+.+|..
T Consensus       120 ~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~  198 (1207)
T d1u6gc_         120 GSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH  198 (1207)
T ss_dssp             -CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                1111 112233344444333 5778888888888774322110000011356677777777788888888888877


Q ss_pred             hhhccch----------------------HH-------HHHH----------hchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 006669          503 LCIYMGN----------------------KG-------RAVR----------AGIISALLKMLTDSRNCMVDEALTILSV  543 (636)
Q Consensus       503 L~~~~~n----------------------~~-------~lv~----------~g~v~~Lv~lL~~~~~~~~~~Al~~L~~  543 (636)
                      |+.+-+.                      +.       .+..          ..+++.+++.+.+.+..+++.++.++..
T Consensus       199 l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~  278 (1207)
T d1u6gc_         199 LVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES  278 (1207)
T ss_dssp             HTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            6532110                      00       0000          1256677777777778888888888887


Q ss_pred             HhcC-hhh----HHHHHh-------------------------c-------CcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 006669          544 LASN-PEA----KIAIVK-------------------------A-------STIPVLIVLLRTGLPRNKENAAAILLSLC  586 (636)
Q Consensus       544 La~~-~~~----~~~i~~-------------------------~-------g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  586 (636)
                      ++.. +..    ...+..                         .       ...+.........+.+.|..|+.+|..+.
T Consensus       279 l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~  358 (1207)
T d1u6gc_         279 FVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVV  358 (1207)
T ss_dssp             HHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHH
T ss_pred             HHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHH
Confidence            7652 211    111110                         0       00001111122345678899999999988


Q ss_pred             ccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhh
Q 006669          587 KRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLR  628 (636)
Q Consensus       587 ~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~  628 (636)
                      ...++...... ..+++.|+..+.+..+.++..+...+..+-
T Consensus       359 ~~~~~~l~~~~-~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~  399 (1207)
T d1u6gc_         359 STRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLL  399 (1207)
T ss_dssp             TTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            77666554443 347889999898888899988887776554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0015  Score=66.44  Aligned_cols=231  Identities=13%  Similarity=0.123  Sum_probs=145.6

Q ss_pred             HHHHHHHHhcC--CCHHHHHHHHHHHHHHhccChhhHH-HHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhh-CcchH
Q 006669          353 AIEALVRKLSS--RSVEERRAAVAEIRSLSKRSTDNRI-IIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSI-YENNK  428 (636)
Q Consensus       353 ~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~-~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~-~~~~k  428 (636)
                      .++.++..+.+  .+.+++..|+..+..+.......-. ........+.+..++.+++++++..++.+|..+.. .+..-
T Consensus       172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            46777777765  3578889999999888754332211 11112345667777888899999999999988875 22211


Q ss_pred             HHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchh---------------------HHHHhcCchHHHHhhhcc
Q 006669          429 GLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENK---------------------IIIGASGAIPALVDLLQN  487 (636)
Q Consensus       429 ~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~---------------------~~i~~~g~i~~Lv~LL~~  487 (636)
                      ...+.....+.+...+.+.+.+.+..|+..+..++......                     ........++.+.+.+.+
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  331 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  331 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhc
Confidence            11111112233444556677888888888887775321100                     000011223444444432


Q ss_pred             -------CCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH--HHHHhcC
Q 006669          488 -------GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAK--IAIVKAS  558 (636)
Q Consensus       488 -------~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~--~~i~~~g  558 (636)
                             +....+..|..++..++...+..  +. ..+++.+.+.+.+.+...++.|+.+|..++......  ... -..
T Consensus       332 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~  407 (458)
T d1ibrb_         332 QDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQ  407 (458)
T ss_dssp             CCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTT
T ss_pred             chhhhccccccHHHHHHHHHHHHHHhccHh--hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHH
Confidence                   12346777788888777544332  12 236677888888899999999999999998643221  111 135


Q ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          559 TIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       559 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                      .++.++..+.+.++.+|..|+++|..++.
T Consensus       408 i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         408 AMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999998875

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=0.0055  Score=63.27  Aligned_cols=223  Identities=14%  Similarity=0.145  Sum_probs=150.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcC-----------------CChHHHHHHHHHHHHhh
Q 006669          362 SSRSVEERRAAVAEIRSLSKRSTDNRIIIAD--AGAIPVLVNLLTT-----------------DDVMTQEHAVTAILNLS  422 (636)
Q Consensus       362 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e--~g~i~~Lv~lL~s-----------------~d~~~~e~Av~aL~nLs  422 (636)
                      .+++.+.+.-|+..+..+.+ .+..|..+..  ...++.|+..|+.                 ....++.+++-+++-||
T Consensus       175 ~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS  253 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT  253 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence            55677777788888888876 4677877753  3456777776642                 12367899999999999


Q ss_pred             hCcchHHHHHHh--CChHHHHHHHhcC-cHHHHHHHHHHHHHccCCCc--h----hHHHHhcCchHHHHhhhccC---CH
Q 006669          423 IYENNKGLIMLA--GAIPSIVQILRAG-SMEARENAAATLFSLSLLDE--N----KIIIGASGAIPALVDLLQNG---ST  490 (636)
Q Consensus       423 ~~~~~k~~I~~~--G~I~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~--~----~~~i~~~g~i~~Lv~LL~~~---~~  490 (636)
                      .+++....+.+.  +.|+.++++++.. -..+..-+.++|.|+.....  +    ...|...+++ +++..|...   ++
T Consensus       254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~De  332 (477)
T d1ho8a_         254 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDE  332 (477)
T ss_dssp             TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSH
T ss_pred             cCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCH
Confidence            987777777665  4588999999765 47788889999999976532  2    2223444555 445555543   34


Q ss_pred             HHHHHHHHHH--------HhhhhccchHH----------------HHH--------H--hchHHHHHHHhcC--------
Q 006669          491 RGRKDAATAL--------FNLCIYMGNKG----------------RAV--------R--AGIISALLKMLTD--------  528 (636)
Q Consensus       491 ~~k~~A~~aL--------~nL~~~~~n~~----------------~lv--------~--~g~v~~Lv~lL~~--------  528 (636)
                      +...+ +..|        ..|+..++.+.                .+-        +  ..++..|+++|.+        
T Consensus       333 dl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~  411 (477)
T d1ho8a_         333 ELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVN  411 (477)
T ss_dssp             HHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccc
Confidence            43322 2222        22332222111                121        1  1278889999952        


Q ss_pred             --CCHHHHHHHHHHHHHHhc-ChhhHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 006669          529 --SRNCMVDEALTILSVLAS-NPEAKIAIVKASTIPVLIVLLRTGLPRNKENAAAILLSLCK  587 (636)
Q Consensus       529 --~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  587 (636)
                        .++.+..-|+.=+..++. +|.||..+-+.|+=..++++|.+.++.+|.+|+.++-.+..
T Consensus       412 ~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         412 AKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence              244555666777777777 78899888888888888999999999999999988876654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=0.0034  Score=69.13  Aligned_cols=262  Identities=10%  Similarity=0.046  Sum_probs=162.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhCcch--HH-
Q 006669          355 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIYENN--KG-  429 (636)
Q Consensus       355 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~~~~--k~-  429 (636)
                      +.|-..+.+++.+.|..|-..|..+..+++.        +.+..|...+.+.  +..++..|+..|.|.......  .. 
T Consensus         8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~--------~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           8 QLLENSILSPDQNIRLTSETQLKKLSNDNFL--------QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            3344556788999999999999888765421        3456788878653  467777888888876542111  00 


Q ss_pred             ---HHH-------HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHHh---cCchHHHHhhhccC-CHHHHHH
Q 006669          430 ---LIM-------LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGA---SGAIPALVDLLQNG-STRGRKD  495 (636)
Q Consensus       430 ---~I~-------~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~---~g~i~~Lv~LL~~~-~~~~k~~  495 (636)
                         ...       ....-..++..+.+.++.++..++.++..++..+     +..   ...++.|++.+.+. +...+..
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~-----~p~~~wpeli~~L~~~~~s~~~~~~~~~  154 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE-----LPHGAWPELMKIMVDNTGAEQPENVKRA  154 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-----GGGTCCHHHHHHHHHHTSTTSCHHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHhcCCCcHHHHHH
Confidence               000       0112345666777788889988888888875321     111   13567777777665 4567778


Q ss_pred             HHHHHHhhhhccchHHH-HHH--hchHHHHHHHhc--CCCHHHHHHHHHHHHHHhcChhhHH--HHHhcCcHHHHHHHHc
Q 006669          496 AATALFNLCIYMGNKGR-AVR--AGIISALLKMLT--DSRNCMVDEALTILSVLASNPEAKI--AIVKASTIPVLIVLLR  568 (636)
Q Consensus       496 A~~aL~nL~~~~~n~~~-lv~--~g~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~~~~~~~--~i~~~g~i~~Lv~lL~  568 (636)
                      |+.+|..++..-+.... +..  ...+..+++.+.  +.+..++..|+.++.++...-..-.  .......++.+...+.
T Consensus       155 al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  234 (861)
T d2bpta1         155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ  234 (861)
T ss_dssp             HHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhc
Confidence            88888888754332211 111  234445555443  3567888999999998876432211  1112235667778888


Q ss_pred             CCCHHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          569 TGLPRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       569 ~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      ..++..+..|..+|..++...++........-+...+.....+.++.++..|..++..+.+
T Consensus       235 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         235 AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            8889999999999999887554433222222122333445566788888888888776643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.14  E-value=0.00034  Score=58.13  Aligned_cols=88  Identities=24%  Similarity=0.222  Sum_probs=74.2

Q ss_pred             CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH
Q 006669          394 GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG  473 (636)
Q Consensus       394 g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~  473 (636)
                      .+++.|+..|.++++.++..|+.+|.++..          .++++.|+..|++.++.++..|+.+|..+.          
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~----------   81 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------   81 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhC----------
Confidence            367889999999999999999999976542          235788999999999999999999998763          


Q ss_pred             hcCchHHHHhhhccCCHHHHHHHHHHHH
Q 006669          474 ASGAIPALVDLLQNGSTRGRKDAATALF  501 (636)
Q Consensus       474 ~~g~i~~Lv~LL~~~~~~~k~~A~~aL~  501 (636)
                      ..+.++.|..++.+.++.++..|+.+|.
T Consensus        82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            2356788899999999999999998874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.08  E-value=0.00066  Score=56.22  Aligned_cols=88  Identities=23%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             CchHHHHhhhccCCHHHHHHHHHHHHhhhhccchHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Q 006669          476 GAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIV  555 (636)
Q Consensus       476 g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~n~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~  555 (636)
                      .+++.|+.+|.+.++.++..|+.+|.++..          .++++.|+++|.+.++.++..|+.+|..+..         
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~---------   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------
Confidence            467899999999999999999999987642          3478999999999999999999999987743         


Q ss_pred             hcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 006669          556 KASTIPVLIVLLRTGLPRNKENAAAILL  583 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  583 (636)
                       ...++.|..++.+.++.++..|+.+|-
T Consensus        83 -~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 -ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             245788888999899999999988773

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.018  Score=63.29  Aligned_cols=272  Identities=13%  Similarity=0.098  Sum_probs=160.4

Q ss_pred             HHHHHHHHhcCCC--HHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhhCcc
Q 006669          353 AIEALVRKLSSRS--VEERRAAVAEIRSLSKRSTDNRIIIAD--AGAIPVLVNLLTTD--DVMTQEHAVTAILNLSIYEN  426 (636)
Q Consensus       353 ~i~~Lv~~L~s~~--~~~~~~Al~~L~~La~~~~~~r~~i~e--~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~~~~  426 (636)
                      .++.|++.+.+++  ...+..++..|..+++.-..  ..+..  ...++.++..+.+.  +..++..|+.++.+......
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  206 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence            5888998886643  56777888888888753221  11111  13567788877654  35788888888877654211


Q ss_pred             hHH--HHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          427 NKG--LIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       427 ~k~--~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                      ...  .....-.+..+...+.+++++.+..+..+|..+..... .-.........+.+...+.+....++..++..+..+
T Consensus       207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            110  01111134556666677889999999999988864322 111111223344455556666777777777666665


Q ss_pred             hhccch---------------------HHHHHHhchHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcChhhHHHHH
Q 006669          504 CIYMGN---------------------KGRAVRAGIISALLKMLTD-------SRNCMVDEALTILSVLASNPEAKIAIV  555 (636)
Q Consensus       504 ~~~~~n---------------------~~~lv~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~  555 (636)
                      +.....                     -........++.+...+..       .+..+...|..+|..++......  +.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~  364 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV  364 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG--GH
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh--hh
Confidence            532110                     1111122345555555532       12235666667776666532211  11


Q ss_pred             hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh-HHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          556 KASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT-ENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                       ...++.+...+.+.++..++.++..+..+..... ...... -...++.+...+.+.++.++..|.+++..+.++
T Consensus       365 -~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence             0123444555566778899988888888775433 222222 233678888899999999999999999887654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.098  Score=56.79  Aligned_cols=272  Identities=10%  Similarity=0.055  Sum_probs=155.2

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCC-hHHHHHHHHHHHHhhhCcch--HHH
Q 006669          355 EALVRKLSSRSVEERRAAVAEIRSLSKRS-TDNRIIIADAGAIPVLVNLLTTDD-VMTQEHAVTAILNLSIYENN--KGL  430 (636)
Q Consensus       355 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~e~g~i~~Lv~lL~s~d-~~~~e~Av~aL~nLs~~~~~--k~~  430 (636)
                      ..+++.+.+++..++..++..+..+++.. +.++  -  ...++.|+..+.+.+ ...+..|+.+|..++..-..  ...
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            45777888888999999998888887532 1110  0  024566777776654 55677888888887642111  110


Q ss_pred             HHH-hCChHHHHHHHh--cCcHHHHHHHHHHHHHccCCCchh--HHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhh
Q 006669          431 IML-AGAIPSIVQILR--AGSMEARENAAATLFSLSLLDENK--IIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCI  505 (636)
Q Consensus       431 I~~-~G~I~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~  505 (636)
                      +.. ...+..++..+.  ..+..++..|..++.++...-...  ........++.+...+++.+++.+..+..++..++.
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            100 112333333333  336889999999998875543211  111122456777888888899999999999988865


Q ss_pred             ccch-HHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh----------------------------------
Q 006669          506 YMGN-KGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEA----------------------------------  550 (636)
Q Consensus       506 ~~~n-~~~lv~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~----------------------------------  550 (636)
                      .... -...+..-+...+.....+.++.++..++..+..++.....                                  
T Consensus       254 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l  333 (861)
T d2bpta1         254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL  333 (861)
T ss_dssp             HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4321 11122221222233344556666666666655554331100                                  


Q ss_pred             --------------HHH----------HHhcCcHHHHHHHH----cCCCHHHHHHHHHHHHHhhccChHHHHHHHHcCCh
Q 006669          551 --------------KIA----------IVKASTIPVLIVLL----RTGLPRNKENAAAILLSLCKRDTENLACISRLGAV  602 (636)
Q Consensus       551 --------------~~~----------i~~~g~i~~Lv~lL----~~~s~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i  602 (636)
                                    +..          ......++.+...+    .+.++..++.|+.++..+..........-.-...+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l  413 (861)
T d2bpta1         334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL  413 (861)
T ss_dssp             TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence                          000          00011233333222    23456677777777777765443322211122357


Q ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHhhcc
Q 006669          603 IPLTELTKSGTERAKRKATSLLEHLRKL  630 (636)
Q Consensus       603 ~~L~~Ll~~g~~~~k~kA~~lL~~l~~~  630 (636)
                      +.+...+.+.++.++..|.+++..+..+
T Consensus       414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T d2bpta1         414 PSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence            8888889999999999999999877653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00051  Score=55.52  Aligned_cols=42  Identities=14%  Similarity=0.370  Sum_probs=32.1

Q ss_pred             ccCccchhhcc--C-CeecCCCchhhhHHHHHHHc----CCC---CCCCCCC
Q 006669          258 FLCPISLELMR--D-PVIVATGQTYERSYIQRWID----CGN---VTCPKTQ  299 (636)
Q Consensus       258 f~CPis~~~m~--d-Pv~~~~G~t~~r~~I~~w~~----~~~---~~cP~~~  299 (636)
                      --||||.+.+.  + |.+.+|||.||+.||.+|+.    ++.   -+||.++
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            35999998874  3 55678999999999999985    232   2599754

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.03  Score=61.40  Aligned_cols=260  Identities=13%  Similarity=0.078  Sum_probs=160.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC--ChHHHHHHHHHHHHhhh-Ccch-HHHH
Q 006669          356 ALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIADAGAIPVLVNLLTTD--DVMTQEHAVTAILNLSI-YENN-KGLI  431 (636)
Q Consensus       356 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~e~g~i~~Lv~lL~s~--d~~~~e~Av~aL~nLs~-~~~~-k~~I  431 (636)
                      .+++..-+++.+.+..|-..|..+.+.++        .|.+..|...+.+.  +..++..|+..|.|... +... +...
T Consensus         5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~   76 (876)
T d1qgra_           5 TILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   76 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence            34455557899999999999988876432        14566788877653  46688888888888653 2111 1110


Q ss_pred             H----------HhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCchhHHHH---hcCchHHHHhhhccC--CHHHHHHH
Q 006669          432 M----------LAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIG---ASGAIPALVDLLQNG--STRGRKDA  496 (636)
Q Consensus       432 ~----------~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~---~~g~i~~Lv~LL~~~--~~~~k~~A  496 (636)
                      .          +...-..++..+.+.+. .+..++.++..++..+     +.   -.+.++.|++.+.++  +...+..+
T Consensus        77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~-----~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~  150 (876)
T d1qgra_          77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAE-----IPVNQWPELIPQLVANVTNPNSTEHMKEST  150 (876)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHH-----GGGTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH-----CCccccHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            0          11122345566655442 3445566666654321     11   126788888888654  46778888


Q ss_pred             HHHHHhhhhccchHH-HHHHhchHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhHH--HHHhcCcHHHHHHHHcCCC
Q 006669          497 ATALFNLCIYMGNKG-RAVRAGIISALLKMLTD--SRNCMVDEALTILSVLASNPEAKI--AIVKASTIPVLIVLLRTGL  571 (636)
Q Consensus       497 ~~aL~nL~~~~~n~~-~lv~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~--~i~~~g~i~~Lv~lL~~~s  571 (636)
                      +.+|..++..-.... .-.-..+++.+++.+.+  .+..++..|+.++.+.........  .....-.++.+...+...+
T Consensus       151 l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  230 (876)
T d1qgra_         151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  230 (876)
T ss_dssp             HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCC
Confidence            899988875322211 11114577888888854  456788888888887765322211  1111123556667777788


Q ss_pred             HHHHHHHHHHHHHhhccChHHHHHHHHcCChHHHHHhhhcCCHHHHHHHHHHHHHhhc
Q 006669          572 PRNKENAAAILLSLCKRDTENLACISRLGAVIPLTELTKSGTERAKRKATSLLEHLRK  629 (636)
Q Consensus       572 ~~~ke~A~~~L~~L~~~~~~~~~~i~~~G~i~~L~~Ll~~g~~~~k~kA~~lL~~l~~  629 (636)
                      +..+..|..+|..++...++.............+.....+..+.++..+...+..+.+
T Consensus       231 ~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            9999999999999988766555444444455556666677778888777776665543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.093  Score=50.83  Aligned_cols=195  Identities=13%  Similarity=0.149  Sum_probs=151.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHH----HHhc-CCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcch
Q 006669          353 AIEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRII----IADA-GAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENN  427 (636)
Q Consensus       353 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----i~e~-g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~  427 (636)
                      .+..|+..|..-+.+.+..++.....+-+.....|..    +... ..+..|+...  +++++--++-..|+...+++..
T Consensus        70 ~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e~l  147 (330)
T d1upka_          70 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEPL  147 (330)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHHH
T ss_pred             hHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhHHH
Confidence            4566777778888999999998888887766555533    3322 2233333332  4666777888889999999999


Q ss_pred             HHHHHHhCChHHHHHHHhcCcHHHHHHHHHHHHHccCCCc-hh-HHHHhc--CchHHHHhhhccCCHHHHHHHHHHHHhh
Q 006669          428 KGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDE-NK-IIIGAS--GAIPALVDLLQNGSTRGRKDAATALFNL  503 (636)
Q Consensus       428 k~~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~~-~~i~~~--g~i~~Lv~LL~~~~~~~k~~A~~aL~nL  503 (636)
                      ...|.....+..+.+....++-++...|..++..|-..+. .. ..+...  ..+...-.+|.+++.-++..++..|..+
T Consensus       148 ak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgel  227 (330)
T d1upka_         148 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL  227 (330)
T ss_dssp             HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            9999998889999999999999999999999998755443 22 223232  4666777899999999999999999999


Q ss_pred             hhccchHHHHHH----hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Q 006669          504 CIYMGNKGRAVR----AGIISALLKMLTDSRNCMVDEALTILSVLASNPE  549 (636)
Q Consensus       504 ~~~~~n~~~lv~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~  549 (636)
                      .....|...+..    ..-+..++.+|++.+..++-+|..+......+|.
T Consensus       228 Lldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         228 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence            999988776644    4578889999999999999999999998888765

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.71  E-value=0.016  Score=54.53  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=16.9

Q ss_pred             CHHHHHHhhcCCChHHHHHHHHH
Q 006669          395 AIPVLVNLLTTDDVMTQEHAVTA  417 (636)
Q Consensus       395 ~i~~Lv~lL~s~d~~~~e~Av~a  417 (636)
                      .+..|..+++.+++.++..|+..
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~   89 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYR   89 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTT
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHH
Confidence            35667788888888888877643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.40  E-value=0.033  Score=52.29  Aligned_cols=85  Identities=19%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHH-----HHh-ccChhhHHHHHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCcchHH
Q 006669          356 ALVRKLSSRSVEERRAAVAEIR-----SLS-KRSTDNRIIIADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKG  429 (636)
Q Consensus       356 ~Lv~~L~s~~~~~~~~Al~~L~-----~La-~~~~~~r~~i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~~~k~  429 (636)
                      .|..+++.++++++..|+..|-     .+. ..+.+-|...++.-..+.|..++..++..++..++.             
T Consensus        70 ~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~-------------  136 (233)
T d1lrva_          70 ALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQ-------------  136 (233)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH-------------
T ss_pred             HHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh-------------
Confidence            3555666677777777664321     111 112222333333223344555555555555544432             


Q ss_pred             HHHHhCChHHHHHHHhcCcHHHHHHHHH
Q 006669          430 LIMLAGAIPSIVQILRAGSMEARENAAA  457 (636)
Q Consensus       430 ~I~~~G~I~~Lv~lL~~~~~e~~~~Aa~  457 (636)
                          ....+.|..+++.++++++..++.
T Consensus       137 ----~~~~~~L~~L~~D~d~~VR~~aA~  160 (233)
T d1lrva_         137 ----RIPPGRLFRFMRDEDRQVRKLVAK  160 (233)
T ss_dssp             ----HSCGGGGGGTTTCSCHHHHHHHHH
T ss_pred             ----ccchhHHHHHhcCCCHHHHHHHHH
Confidence                223344445555666666665543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.44  E-value=13  Score=35.66  Aligned_cols=175  Identities=14%  Similarity=0.154  Sum_probs=104.4

Q ss_pred             HHHHhcCCCH-HHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcC-----------CChHHHHHHHHHHHHhhh
Q 006669          357 LVRKLSSRSV-EERRAAVAEIRSLSKRSTDN-RIIIADAGAIPVLVNLLTT-----------DDVMTQEHAVTAILNLSI  423 (636)
Q Consensus       357 Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~-r~~i~e~g~i~~Lv~lL~s-----------~d~~~~e~Av~aL~nLs~  423 (636)
                      .|..|+++.. +.....+..|+---+.++-. -..+ ..+|+..|+.+|..           .+...+..++.+|..+..
T Consensus         7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn   85 (343)
T d2bnxa1           7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   85 (343)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence            4455554432 22223344443322333333 2333 45667778877731           124567788899998888


Q ss_pred             CcchHHHHHH-hCChHHHHHHHhcCcHHHHHHHHHHHHHccCCC---chh----------HHHHhcCchHHHHhhhccCC
Q 006669          424 YENNKGLIML-AGAIPSIVQILRAGSMEARENAAATLFSLSLLD---ENK----------IIIGASGAIPALVDLLQNGS  489 (636)
Q Consensus       424 ~~~~k~~I~~-~G~I~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~~~----------~~i~~~g~i~~Lv~LL~~~~  489 (636)
                      +......+++ .+++..|+..|.+..+.++..|..+|..++..+   +..          ....+.+-+.++++.+++++
T Consensus        86 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~  165 (343)
T d2bnxa1          86 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  165 (343)
T ss_dssp             SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS
T ss_pred             cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccc
Confidence            7776666665 788999999998889999999999998887542   111          12334467888999888764


Q ss_pred             -HHHHHHHHHHHHhhhhccch-------HHHHHHhchHHHHHHHhcC-CCHHH
Q 006669          490 -TRGRKDAATALFNLCIYMGN-------KGRAVRAGIISALLKMLTD-SRNCM  533 (636)
Q Consensus       490 -~~~k~~A~~aL~nL~~~~~n-------~~~lv~~g~v~~Lv~lL~~-~~~~~  533 (636)
                       .+.+..++..+=.|..+.++       |..+..+|..+.+ +.|.. .++.+
T Consensus       166 ~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il-~~l~~~~~~~L  217 (343)
T d2bnxa1         166 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDM  217 (343)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHH
T ss_pred             cHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHH-HHHHccCChHH
Confidence             44444444333334444332       4555667766554 44544 45443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=16  Score=34.57  Aligned_cols=238  Identities=16%  Similarity=0.140  Sum_probs=165.9

Q ss_pred             HHhcCCHHHHHHhhcCCChHHHHHHHHHHHHhhhCc-chH----HHHHHhCChHHHHHHHhcC--cHHHHHHHHHHHHHc
Q 006669          390 IADAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYE-NNK----GLIMLAGAIPSIVQILRAG--SMEARENAAATLFSL  462 (636)
Q Consensus       390 i~e~g~i~~Lv~lL~s~d~~~~e~Av~aL~nLs~~~-~~k----~~I~~~G~I~~Lv~lL~~~--~~e~~~~Aa~~L~~L  462 (636)
                      +...+.+..|+..|..-+-+.+..++.+..++.... .++    ..+...   +-++..|-.|  +++....+-..|...
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~---~eil~~L~~gye~~eiAl~~G~mLREc  141 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ---QNILFMLLKGYESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC---THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC---HHHHHHHHhhcCCcchhhhhhHHHHHH
Confidence            334577888999999889999999999999987632 222    333321   2334433333  577777777888888


Q ss_pred             cCCCchhHHHHhcCchHHHHhhhccCCHHHHHHHHHHHHhhhhccc-hHHHHHHh---chHHHHHHHhcCCCHHHHHHHH
Q 006669          463 SLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMG-NKGRAVRA---GIISALLKMLTDSRNCMVDEAL  538 (636)
Q Consensus       463 s~~~~~~~~i~~~g~i~~Lv~LL~~~~~~~k~~A~~aL~nL~~~~~-n~~~lv~~---g~v~~Lv~lL~~~~~~~~~~Al  538 (636)
                      ...+.....|.....+..+.+.++.++-++..+|...+..|...+. -.+.++..   -.+...-.+|.+++=-++..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            7777778888888888999999999999999999999998766553 34455543   3566677888888888999999


Q ss_pred             HHHHHHhcChhhHHHHHh----cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhccCh--HHHH-HHHH--cCChHHHHHhh
Q 006669          539 TILSVLASNPEAKIAIVK----ASTIPVLIVLLRTGLPRNKENAAAILLSLCKRDT--ENLA-CISR--LGAVIPLTELT  609 (636)
Q Consensus       539 ~~L~~La~~~~~~~~i~~----~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~--~~~~-~i~~--~G~i~~L~~Ll  609 (636)
                      ..|..+-....+...+..    ..-+..++.+|++.+..++-.|..+..-...+..  .... .+..  ...+.-|-.+.
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~  301 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ  301 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCC
Confidence            999999998888877654    2347778889999999999999999987776542  3333 3332  22344444443


Q ss_pred             hcC--CHHHHHHHHHHHHHhhcc
Q 006669          610 KSG--TERAKRKATSLLEHLRKL  630 (636)
Q Consensus       610 ~~g--~~~~k~kA~~lL~~l~~~  630 (636)
                      .+.  ++.-...=..+++.|...
T Consensus       302 ~d~~~DeqF~~EK~~lI~~I~~L  324 (330)
T d1upka_         302 NDRTEDEQFNDEKTYLVKQIRDL  324 (330)
T ss_dssp             TTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             CCCCchhhHHHHHHHHHHHHHhC
Confidence            332  334433334455555543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.02  E-value=12  Score=35.94  Aligned_cols=128  Identities=18%  Similarity=0.146  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhhhhccchHHHHHH-hchHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh---hhHHHH----------H
Q 006669          490 TRGRKDAATALFNLCIYMGNKGRAVR-AGIISALLKMLTDSRNCMVDEALTILSVLASNP---EAKIAI----------V  555 (636)
Q Consensus       490 ~~~k~~A~~aL~nL~~~~~n~~~lv~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~---~~~~~i----------~  555 (636)
                      ......++.+|..+..+..+...+++ .+++..++..|.+.+..++..|+.+|..+|..+   +|-..+          .
T Consensus        70 ~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~  149 (343)
T d2bnxa1          70 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  149 (343)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhc
Confidence            34566788888888877777777776 779999999998899999999999999999642   333222          2


Q ss_pred             hcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhccCh------HHHHHHHHcCChHHHHHhhhcCCHHHH
Q 006669          556 KASTIPVLIVLLRTG-LPRNKENAAAILLSLCKRDT------ENLACISRLGAVIPLTELTKSGTERAK  617 (636)
Q Consensus       556 ~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~------~~~~~i~~~G~i~~L~~Ll~~g~~~~k  617 (636)
                      +.+-...++..++.+ +...+..+...+-.++.+.+      ..+.++...|..+.+-.+-..+++...
T Consensus       150 e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~  218 (343)
T d2bnxa1         150 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK  218 (343)
T ss_dssp             TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             CCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHH
Confidence            335578888888765 35555555666666766544      234456678877777776655666554