Citrus Sinensis ID: 006686

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-----
MASAASMSVSVECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPAHSSSLSLGPTGRRNRINSRCEAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSVSSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTIAL
ccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHcHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHccccccHHHcEEEEEEEEccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccEEEEccccccccccccccccccHHHHHccccccccEEEEccEEcccccccccccEEEEEEccccccccccc
cccccccEEEEEEEEEEEccccccccccccccHHHHHHccccHHHcHHHccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccHHEcccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccEEEcHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHHccccEHHHHHHHHcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHcccHHHHHHHHHEEEEEccccccccccccccHHHHHHHHHHHHHccccccccccHEEccccccccccccEEEEcccccccccEEEEEEcHHHHHHHHHHHHEHHEHcccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccEEEEEcccccEEEccccccccEEEEEEHHcccccEEEEEEccEEEccccEcccccEEEEEEccccccccccc
MASAASMSVSVECVNicklpkgdgsgryydcsvlscawkapraltgflastthpahssslslgptgrrnrinsrceafdvgswctegsdlvllgklprssllhVACKRwrlclspsvssdafkedsperlwedlrptisylspNELELVRRALMLAFEahdgqkrrsgepfiihPVEVARILGELELDWESIAAGLlhdtvedtnvvTFERIEEEFGATVRRIVEGEtkvsklgklkcknenhsvqdvkaDDLRQMFLAMTEEVRVIIVKLADRLhnmrtlshmpphkqssiatETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLksrgsinevNQIAQLRIiikpkpcsgvgplcspqqiCYHVLGLvhgiwtpipramkdyiatpkpngyqslhTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLvgharpngrsprgktvclnNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRdllgsrvfvftprgeiknlpkgatvvDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTIAL
MASAASMSVSVECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTthpahssslslgptgrrNRINSRCEAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRlclspsvssdafkedsperlwedlrptisylsPNELELVRRALMLAFEAhdgqkrrsgepfiIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIeeefgatvrrivegetkvsklgklkcknenhsvqdvkadDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTeirsvckepYSIYKAvlksrgsinEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGharpngrsprgktvCLNNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFvftprgeiknlpkgatvVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTIAL
masaasmsvsvECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPAHSSSLSLGPTGRRNRINSRCEAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSVSSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTIAL
*********SVECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLAS********************INSRCEAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSP**************LWEDLRPTISYLSPNELELVRRALMLAFEAHDG****SGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRT***********IATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARP*****RGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTI**
**********VECVNICKLPKG*GSG*Y*DCSVLSCAWKAPRALTG*********************************************************************************ERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCK********VKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRV********KELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTG**********************NIALRISWLNAIREWQEEFVG*MTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVS*******
**********VECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLAS**************TGRRNRINSRCEAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPS***********ERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTIAL
*****SMSVSVECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTH***S**L*L****RRNRINSRCEAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSVSSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVF*****************KTVCLNNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNV********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASAASMSVSVECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPAHSSSLSLGPTGRRNRINSRCEAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSVSSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTIAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query635 2.2.26 [Sep-21-2011]
O52177 757 GTP pyrophosphokinase OS= yes no 0.703 0.590 0.417 1e-103
O54408 734 GTP pyrophosphokinase OS= yes no 0.694 0.600 0.403 3e-94
Q8CS97 729 GTP pyrophosphokinase OS= yes no 0.696 0.606 0.391 8e-91
Q5HNR8 729 GTP pyrophosphokinase OS= yes no 0.696 0.606 0.391 8e-91
Q6GG70 736 GTP pyrophosphokinase OS= yes no 0.707 0.610 0.387 3e-90
P0A0E9 736 GTP pyrophosphokinase OS= yes no 0.707 0.610 0.387 4e-90
P0A0F0 736 GTP pyrophosphokinase OS= yes no 0.707 0.610 0.387 4e-90
Q6G8T5 736 GTP pyrophosphokinase OS= yes no 0.707 0.610 0.387 4e-90
Q99TL8 736 GTP pyrophosphokinase OS= yes no 0.707 0.610 0.387 4e-90
Q931Q4 736 GTP pyrophosphokinase OS= yes no 0.707 0.610 0.387 4e-90
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 Back     alignment and function desciption
 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/503 (41%), Positives = 309/503 (61%), Gaps = 56/503 (11%)

Query: 124 EDSPERLWEDLRPTISYLSPN-ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL 182
           +DSPER      PT+S   P+ +L+++++A + + + H GQ R+SGEP+++HP+EVA IL
Sbjct: 19  DDSPERH----PPTVSQYHPDPDLDIIKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGIL 74

Query: 183 GELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNEN 242
           GEL+LD  SI  GLLHDT+EDT + T E + E FG+ V  +V+G TK+SK       + +
Sbjct: 75  GELKLDEASIVTGLLHDTIEDT-LATEEELTELFGSEVAHLVDGVTKLSKF----SASAS 129

Query: 243 HSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAP 302
            S ++ +A++ R+M +AM +++RVI+VKLADR HNMRTL HM   KQ+ IA ETL ++AP
Sbjct: 130 LSQEEKQAENFRKMIIAMAQDIRVILVKLADRTHNMRTLDHMSEEKQARIAQETLDIYAP 189

Query: 303 LAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362
           LA  LG+  IK+ELE+LSF Y   +++  ++ ++    KE EK +E+   ++  K+ +  
Sbjct: 190 LANRLGISWIKTELEDLSFRYVKPQEFFALQAKLNKRKKEREKYIEDTCDLIRSKLAE-- 247

Query: 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRG-SINEVNQIAQLRIIIKPKPCSGVGPLCSP 421
                 +K E+    K  YSIYK + KS+G   ++++ I   RII    P          
Sbjct: 248 ----RGLKGEVSGRFKHVYSIYKKI-KSQGIDFDQIHDIIAFRIIAPTAPS--------- 293

Query: 422 QQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEE 481
              CY  LGLVH +W P+P   KD+IA PKPN YQSLHTT+I  L E   R+EVQIRT E
Sbjct: 294 ---CYEALGLVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSE---RVEVQIRTSE 347

Query: 482 MDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQE 541
           M  IAE GIAAH+                 +   GK V   +     + +WL  + EWQ+
Sbjct: 348 MHKIAEEGIAAHW-----------------KYKEGKAVISKDDE---KFAWLRQLMEWQQ 387

Query: 542 EFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAA 601
           +       +EF++T+  DL    VFVFTP+G++++LP+GAT VD+AY IH+++GN+ V A
Sbjct: 388 DL---KDPKEFLETVKVDLFTDEVFVFTPKGDVRSLPRGATPVDFAYAIHSDVGNRCVGA 444

Query: 602 KVNGNLVSPTHVLANAEVVEIIT 624
           KVNG +V   + + N + VE++T
Sbjct: 445 KVNGKIVPLRYKMKNGDTVEVLT 467
In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp.
Myxococcus xanthus (taxid: 34)
EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 5
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 Back     alignment and function description
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2 Back     alignment and function description
>sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query635
224131084 892 predicted protein [Populus trichocarpa] 0.984 0.700 0.851 0.0
297743917 883 unnamed protein product [Vitis vinifera] 0.982 0.706 0.854 0.0
225437434 887 PREDICTED: GTP pyrophosphokinase-like [V 0.982 0.703 0.849 0.0
449469300 883 PREDICTED: GTP pyrophosphokinase-like [C 0.985 0.708 0.829 0.0
255564246 887 guanosine-3',5'-bis(diphosphate) 3'-pyro 0.962 0.688 0.840 0.0
449484441 883 PREDICTED: LOW QUALITY PROTEIN: GTP pyro 0.985 0.708 0.827 0.0
356503913 882 PREDICTED: GTP pyrophosphokinase-like [G 0.963 0.693 0.842 0.0
356570978 882 PREDICTED: GTP pyrophosphokinase-like [G 0.963 0.693 0.839 0.0
30268666 876 RelA-SpoT like protein RSH1 [Nicotiana t 0.974 0.706 0.824 0.0
307066606 885 RSH1 [Ipomoea nil] 0.982 0.705 0.794 0.0
>gi|224131084|ref|XP_002320997.1| predicted protein [Populus trichocarpa] gi|222861770|gb|EEE99312.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1102 bits (2851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/640 (85%), Positives = 575/640 (89%), Gaps = 15/640 (2%)

Query: 1   MASAASMSVSVECVNICKL-PKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPA-HSS 58
           MASA+S+SV VEC+NICKL  KGDGSGRY +CSVLSCAWKAPR LTGFLAST HP+   S
Sbjct: 1   MASASSLSVPVECLNICKLLSKGDGSGRY-ECSVLSCAWKAPRVLTGFLASTAHPSPQCS 59

Query: 59  SLSLGPTGRRNRINSRCEAFDVGS-WCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSV 117
           S   G  GRR +  SRC+AFD G  + +E SD  LLG+  +S L HVA K+W+L  S S+
Sbjct: 60  SFLCGRNGRRKQFKSRCKAFDTGGCYSSEDSDFALLGRFFKSRLHHVAGKKWQLSSSSSI 119

Query: 118 SSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVE 177
           S+D F E SPERLWEDL+PT+SYLSP ELELV +AL LAFEAHDGQKRRSGEPFIIHPVE
Sbjct: 120 SADTFNEVSPERLWEDLKPTVSYLSPKELELVHKALKLAFEAHDGQKRRSGEPFIIHPVE 179

Query: 178 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLK 237
           VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFG  VR IVEGETKVSKLGKLK
Sbjct: 180 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGPIVRHIVEGETKVSKLGKLK 239

Query: 238 CKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETL 297
           CKNEN SVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMP HKQSSIA ETL
Sbjct: 240 CKNENESVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPLHKQSSIAMETL 299

Query: 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKK 357
           QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKIL KK
Sbjct: 300 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILKKK 359

Query: 358 IEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGP 417
           IE+DQFLDL+TVKT++R+VCKEPYSIY+AVLKS+GSINEVNQIAQLRIII+PKPC G GP
Sbjct: 360 IEEDQFLDLLTVKTDVRAVCKEPYSIYRAVLKSKGSINEVNQIAQLRIIIQPKPCIGAGP 419

Query: 418 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQI 477
           LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQI
Sbjct: 420 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQI 479

Query: 478 RTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIR 537
           RTEEMDLIAERGIAAHYSGRVFVTGLVGHA PNGRS RGK VCLNNANIALRI WLNAIR
Sbjct: 480 RTEEMDLIAERGIAAHYSGRVFVTGLVGHAMPNGRSTRGKAVCLNNANIALRIGWLNAIR 539

Query: 538 EWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGE-----------IKNLPKGATVVDY 586
           EWQEEFVGNM+SREFV+TITRDLLGS VFVFTPRGE           IKNLPKGAT +DY
Sbjct: 540 EWQEEFVGNMSSREFVETITRDLLGSCVFVFTPRGEFWILIFDDMVQIKNLPKGATAIDY 599

Query: 587 AYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626
           AYMIHTEIGNKMVAAKVNGNLVSP HVLANAEVVEIITYN
Sbjct: 600 AYMIHTEIGNKMVAAKVNGNLVSPMHVLANAEVVEIITYN 639

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297743917|emb|CBI36887.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225437434|ref|XP_002272154.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449469300|ref|XP_004152359.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255564246|ref|XP_002523120.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi|223537682|gb|EEF39305.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449484441|ref|XP_004156884.1| PREDICTED: LOW QUALITY PROTEIN: GTP pyrophosphokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356503913|ref|XP_003520744.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|356570978|ref|XP_003553659.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|307066606|gb|ADN23834.1| RSH1 [Ipomoea nil] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query635
TAIR|locus:2137869 884 RSH1 "RELA/SPOT homolog 1" [Ar 0.965 0.693 0.768 4.3e-251
TIGR_CMR|DET_0005 728 DET_0005 "GTP pyrophosphokinas 0.491 0.428 0.398 6.4e-85
TIGR_CMR|CBU_0303 707 CBU_0303 "guanosine-3,5-bis(di 0.420 0.377 0.392 5.4e-82
TIGR_CMR|CPS_4973 703 CPS_4973 "guanosine-3,5-bis(di 0.420 0.379 0.397 7.8e-82
UNIPROTKB|Q3A9Z8 716 relA "GTP pyrophosphokinase" [ 0.411 0.364 0.425 1.4e-74
TIGR_CMR|CHY_2223 716 CHY_2223 "GTP pyrophosphokinas 0.411 0.364 0.425 1.4e-74
TIGR_CMR|GSU_2236 716 GSU_2236 "GTP pyrophosphokinas 0.417 0.370 0.408 1.8e-74
TIGR_CMR|BA_4637 727 BA_4637 "GTP pyrophosphokinase 0.422 0.368 0.427 2.5e-73
TIGR_CMR|SO_0359 701 SO_0359 "guanosine-3,5-bis(dip 0.414 0.375 0.414 3.7e-66
UNIPROTKB|P0AG24 702 spoT "guanosine 3'-diphosphate 0.411 0.371 0.411 5.1e-62
TAIR|locus:2137869 RSH1 "RELA/SPOT homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2418 (856.2 bits), Expect = 4.3e-251, P = 4.3e-251
 Identities = 476/619 (76%), Positives = 526/619 (84%)

Query:    12 ECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPAHSSSLSLGPTGRRNRI 71
             ECVNIC L KGDG+ R  DCS LSCAWKAPRALTGFLAST HP   S  S G  GR++R+
Sbjct:    12 ECVNICNLTKGDGNARS-DCSALSCAWKAPRALTGFLASTAHPPVCSVYSCGRNGRKSRM 70

Query:    72 NSRC--EAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRL-CLSPSVSSDAFKEDSPE 128
              + C  + ++     +E    V +  + +S L     KRW L C+S   SS A  + + E
Sbjct:    71 KA-CAWQRYEYEVGFSEAPYFVNVRNILKSRLSCGGHKRWELYCVSAESSSGASSDVTVE 129

Query:   129 RLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELD 188
              LWEDL P+ISYL   ELE V++ L LAFEAH GQKRRSGEPFIIHPV VARILGELELD
Sbjct:   130 TLWEDLFPSISYLPRKELEFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGELELD 189

Query:   189 WESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDV 248
             WESI AGLLHDTVEDTN +TFE+IEEEFGATVR IVEGETKVSKLGKLKCK E+ ++QDV
Sbjct:   190 WESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKLKCKTESETIQDV 249

Query:   249 KADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLG 308
             KADDLRQMFLAMT+EVRVIIVKLADRLHNMRTL HMPPHKQSSIA ETLQVFAPLAKLLG
Sbjct:   250 KADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLG 309

Query:   309 MYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMT 368
             MY IKSELENLSFMY +AEDY +V  R+A+LYKEHEKEL EAN+IL+KKIEDDQFLDL+T
Sbjct:   310 MYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIEDDQFLDLVT 369

Query:   369 VKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQ-LRIIIKPKPCSGVGPLCSPQQICYH 427
             V T++RSVCKE YSIYKA LKS+GSIN+ NQIAQ LRI++KPKP  GVGPLCSPQQICYH
Sbjct:   370 VNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYH 429

Query:   428 VLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAE 487
             VLGLVH IW PIPR +KDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQIRTEEMDLIAE
Sbjct:   430 VLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAE 489

Query:   488 RGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNM 547
             RGIA +Y+G+   TGLVG+A P GR+ RGKT CLNNA+ ALR+ WLNAIREWQEEFVGNM
Sbjct:   490 RGIAVYYNGKSLSTGLVGNAVPLGRNSRGKTGCLNNADFALRVGWLNAIREWQEEFVGNM 549

Query:   548 TSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNL 607
             +SREFVDTITRDLLGSRVFVFTP+GEIKNLPKGATVVDYAY+IHTEIGNKMVAAKVNGNL
Sbjct:   550 SSREFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYAYLIHTEIGNKMVAAKVNGNL 609

Query:   608 VSPTHVLANAEVVEIITYN 626
             VSPTHVL NAEVVEI+TYN
Sbjct:   610 VSPTHVLENAEVVEIVTYN 628
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0015969 "guanosine tetraphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP
TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0303 CBU_0303 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0359 SO_0359 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0AG24 spoT "guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional]" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.6LOW CONFIDENCE prediction!
4th Layer2.7.6.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
COG0317 701 COG0317, SpoT, Guanosine polyphosphate pyrophospho 1e-162
TIGR00691 683 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp 1e-141
PRK11092 702 PRK11092, PRK11092, bifunctional (p)ppGpp syntheta 1e-117
PRK10872 743 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos 6e-71
pfam13328156 pfam13328, HD_4, HD domain 3e-52
smart00954111 smart00954, RelA_SpoT, Region found in RelA / SpoT 4e-35
pfam04607116 pfam04607, RelA_SpoT, Region found in RelA / SpoT 4e-34
cd0166860 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S 2e-30
cd05399129 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( 1e-29
pfam0282460 pfam02824, TGS, TGS domain 9e-22
cd0161660 cd01616, TGS, The TGS domain, named after the ThrR 3e-10
pfam01966111 pfam01966, HD, HD domain 8e-08
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 9e-07
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 1e-06
cd0166976 cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-termina 4e-06
COG2357231 COG2357, COG2357, PpGpp synthetase catalytic domai 7e-06
PRK09602396 PRK09602, PRK09602, translation-associated GTPase; 2e-05
PRK12444 639 PRK12444, PRK12444, threonyl-tRNA synthetase; Revi 5e-05
PRK00413 638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 7e-05
cd0166675 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentall 3e-04
pfam1095760 pfam10957, DUF2758, Protein of unknown function (D 0.001
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
 Score =  480 bits (1237), Expect = e-162
 Identities = 204/495 (41%), Positives = 295/495 (59%), Gaps = 54/495 (10%)

Query: 130 LWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDW 189
             E+L  +++   P     +++A   A +AH GQ R+SGEP+I HP+EVA IL EL +D 
Sbjct: 8   ELEELLDSLATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDM 67

Query: 190 ESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVK 249
           E++AA LLHDT+EDT V T E IEE FG  V ++VEG TK+ K+G+L  + E       +
Sbjct: 68  ETLAAALLHDTIEDTPV-TEELIEEIFGKEVAKLVEGVTKLKKIGQLSSEEEL------Q 120

Query: 250 ADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGM 309
           A++LR+M LAM +++RV+++KLADRLHN+RTL ++   K+  IA ETL ++APLA  LG+
Sbjct: 121 AENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGI 180

Query: 310 YQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTV 369
            QIK ELE+LSF Y + + Y ++ + + +   E E+ +E     L ++++         +
Sbjct: 181 GQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG------I 234

Query: 370 KTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVL 429
           K E+    K  YSIY+ + K + S +E+  +  +RII+                 CY  L
Sbjct: 235 KAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVD------------TIPDCYTAL 282

Query: 430 GLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERG 489
           G+VH +W PIP    DYIA PKPNGYQSLHTT+I         +EVQIRT+EM  IAE G
Sbjct: 283 GIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVI---GPEGKPVEVQIRTKEMHEIAELG 339

Query: 490 IAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTS 549
           +AAH+                 R   G +          +I+WL  + EWQEE   +  S
Sbjct: 340 VAAHW-----------------RYKEGGSAYEE------KIAWLRQLLEWQEE-SAD--S 373

Query: 550 REFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS 609
            EF++ +  DL   RV+VFTP+G++ +LPKGAT +D+AY +HT+IG++ + AKVNG +V 
Sbjct: 374 GEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVNGRIVP 433

Query: 610 PTHVLANAEVVEIIT 624
            T  L   + VEIIT
Sbjct: 434 LTTKLQTGDQVEIIT 448

Length = 701
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>gnl|CDD|222047 pfam13328, HD_4, HD domain Back     alignment and domain information
>gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>gnl|CDD|217243 pfam02824, TGS, TGS domain Back     alignment and domain information
>gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|133439 cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea Back     alignment and domain information
>gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed Back     alignment and domain information
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|133436 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 Back     alignment and domain information
>gnl|CDD|151404 pfam10957, DUF2758, Protein of unknown function (DUF2758) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 635
COG0317 701 SpoT Guanosine polyphosphate pyrophosphohydrolases 100.0
PRK10872 743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 100.0
PRK11092 702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 100.0
TIGR00691 683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 100.0
KOG1157543 consensus Predicted guanosine polyphosphate pyroph 100.0
PF13328153 HD_4: HD domain; PDB: 3NR1_B. 100.0
PF04607115 RelA_SpoT: Region found in RelA / SpoT proteins; I 99.94
cd05399129 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain 99.94
COG2357231 PpGpp synthetase catalytic domain [General functio 99.94
PF0282460 TGS: TGS domain; InterPro: IPR004095 The TGS domai 99.66
cd0166675 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate 98.98
cd0166860 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote 98.94
cd0166976 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma 98.85
cd0161660 TGS The TGS domain, named after the ThrRS, GTPase, 98.67
cd0166761 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn 98.57
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 98.35
PRK12444 639 threonyl-tRNA synthetase; Reviewed 98.09
TIGR03276179 Phn-HD phosphonate degradation operons associated 98.08
PLN02908 686 threonyl-tRNA synthetase 98.08
cd0493876 TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma 98.03
PRK09602396 translation-associated GTPase; Reviewed 97.86
COG1163365 DRG Predicted GTPase [General function prediction 97.4
PRK0565966 sulfur carrier protein ThiS; Validated 97.4
cd0056565 ThiS ThiaminS ubiquitin-like sulfur carrier protei 97.34
PRK0643767 hypothetical protein; Provisional 97.29
PRK0744070 hypothetical protein; Provisional 97.13
PRK0694465 sulfur carrier protein ThiS; Provisional 96.98
COG210468 ThiS Sulfur transfer protein involved in thiamine 96.94
PRK0836470 sulfur carrier protein ThiS; Provisional 96.88
PRK0769667 sulfur carrier protein ThiS; Provisional 96.84
TIGR0168364 thiS thiamine biosynthesis protein ThiS. This mode 96.82
PRK0805366 sulfur carrier protein ThiS; Provisional 96.78
KOG1637 560 consensus Threonyl-tRNA synthetase [Translation, r 96.61
PRK0648865 sulfur carrier protein ThiS; Validated 96.45
PTZ00258390 GTP-binding protein; Provisional 96.43
PRK0177795 hypothetical protein; Validated 96.4
PLN0279982 Molybdopterin synthase sulfur carrier subunit 96.25
PRK0608384 sulfur carrier protein ThiS; Provisional 95.94
PRK0586365 sulfur carrier protein ThiS; Provisional 95.85
cd0075480 MoaD Ubiquitin domain of MoaD-like proteins. MoaD 95.83
PF1445181 Ub-Mut7C: Mut7-C ubiquitin 95.48
PF0259777 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam 95.27
PRK11840 326 bifunctional sulfur carrier protein/thiazole synth 94.56
PF0365884 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 94.17
PRK14707 2710 hypothetical protein; Provisional 93.37
TIGR0168280 moaD molybdopterin converting factor, subunit 1, n 93.25
PRK09601364 GTP-binding protein YchF; Reviewed 92.26
TIGR0168788 moaD_arch MoaD family protein, archaeal. Members o 90.04
PF0607184 YchF-GTPase_C: Protein of unknown function (DUF933 89.14
PRK1113081 moaD molybdopterin synthase small subunit; Provisi 86.24
PRK147072710 hypothetical protein; Provisional 85.21
PRK09169 2316 hypothetical protein; Validated 82.84
PRK12703339 tRNA 2'-O-methylase; Reviewed 81.83
smart00471124 HDc Metal dependent phosphohydrolases with conserv 80.51
COG291499 Uncharacterized protein conserved in bacteria [Fun 80.1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2e-130  Score=1102.05  Aligned_cols=446  Identities=46%  Similarity=0.750  Sum_probs=414.1

Q ss_pred             CCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhcccccc
Q 006686          124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED  203 (635)
Q Consensus       124 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvED  203 (635)
                      .++.+++.+.+.   .+.++.+.. +.+|+.||.++|.||+|+||+|||.||++||.||+++++|.++++||||||++||
T Consensus         6 ~~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vED   81 (701)
T COG0317           6 CVELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIED   81 (701)
T ss_pred             cccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhc
Confidence            344444555443   556566666 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHhChHHHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccC
Q 006686          204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH  283 (635)
Q Consensus       204 T~~~T~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~  283 (635)
                      |+ +|.++|++.||++|+.||+||||+++++++..      ....|+|++|+|++||++|+||++||||||||||||+..
T Consensus        82 t~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~~------~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~  154 (701)
T COG0317          82 TP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLSS------EEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKN  154 (701)
T ss_pred             CC-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccCc------cchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCcc
Confidence            98 89999999999999999999999998864322      234589999999999999999999999999999999999


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006686          284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQF  363 (635)
Q Consensus       284 ~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~  363 (635)
                      ++++||+++|+||++|||||||||||+++|||||||||+|++|++|..|++.|.+.|.+++.++++++..|++.|.+++ 
T Consensus       155 ~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~g-  233 (701)
T COG0317         155 LDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG-  233 (701)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999999998864 


Q ss_pred             cccccceeEEEEEecChHHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccc
Q 006686          364 LDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAM  443 (635)
Q Consensus       364 l~~~~i~~~V~~R~K~~~SI~~Km~rk~~~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~  443 (635)
                           +.++|.||+||+||||+||++|+..|++|+|++||||||++.            .|||++||+||.+|+|+|++|
T Consensus       234 -----i~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~------------~dCY~~LGiVH~~~kp~PgrF  296 (701)
T COG0317         234 -----IKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTI------------PDCYTALGIVHTLWKPIPGEF  296 (701)
T ss_pred             -----CeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECCh------------HHHHHHHHHHHhcCcCCCCcc
Confidence                 789999999999999999999999999999999999999864            699999999999999999999


Q ss_pred             cccccCCCCCCCcceEEEEeccCCCCceeEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccch
Q 006686          444 KDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNN  523 (635)
Q Consensus       444 kDYIa~PK~nGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~~  523 (635)
                      |||||+||+||||||||||++++   |.++||||||..||..||+|+||||+||++.                       
T Consensus       297 KDYIA~PK~NgYQSlHTtv~gp~---g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~-----------------------  350 (701)
T COG0317         297 DDYIANPKPNGYQSLHTTVIGPE---GKPVEVQIRTKEMHEIAELGVAAHWRYKEGG-----------------------  350 (701)
T ss_pred             ccccccCCCCCCceeEEEEECCC---CceEEEEEecHHHHHHHhhhHHHHhHhhcCC-----------------------
Confidence            99999999999999999998643   4699999999999999999999999999841                       


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcCCChhhhHhhhhhhhccCCceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEE
Q 006686          524 ANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV  603 (635)
Q Consensus       524 ~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~i~~dL~~~~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV  603 (635)
                      ...+..++||++|++||++.   .++.||++.+|.|||.++||||||+|++++||.|+||+||||+|||++|++|+||||
T Consensus       351 ~~~~~~~~Wlr~lle~q~~~---~d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV  427 (701)
T COG0317         351 SAYEEKIAWLRQLLEWQEES---ADSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV  427 (701)
T ss_pred             chhhHHHHHHHHHHHHHHhc---CCcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE
Confidence            01235789999999999996   246899999999999999999999999999999999999999999999999999999


Q ss_pred             CCEecCCCccCCCCCEEEEEecCC
Q 006686          604 NGNLVSPTHVLANAEVVEIITYNV  627 (635)
Q Consensus       604 NG~~vdL~~~L~~gd~VEIiT~~d  627 (635)
                      ||+++||+++|++||+|||||.++
T Consensus       428 nG~ivpl~~~Lk~Gd~VEIit~k~  451 (701)
T COG0317         428 NGRIVPLTTKLQTGDQVEIITSKH  451 (701)
T ss_pred             CCEEeccceecCCCCEEEEEeCCC
Confidence            999999999999999999999887

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] Back     alignment and domain information
>PF13328 HD_4: HD domain; PDB: 3NR1_B Back     alignment and domain information
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat Back     alignment and domain information
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>COG2357 PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] Back     alignment and domain information
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 Back     alignment and domain information
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea Back     alignment and domain information
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF Back     alignment and domain information
>PRK09602 translation-associated GTPase; Reviewed Back     alignment and domain information
>COG1163 DRG Predicted GTPase [General function prediction only] Back     alignment and domain information
>PRK05659 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>PRK07440 hypothetical protein; Provisional Back     alignment and domain information
>PRK06944 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK08364 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK07696 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>TIGR01683 thiS thiamine biosynthesis protein ThiS Back     alignment and domain information
>PRK08053 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06488 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PTZ00258 GTP-binding protein; Provisional Back     alignment and domain information
>PRK01777 hypothetical protein; Validated Back     alignment and domain information
>PLN02799 Molybdopterin synthase sulfur carrier subunit Back     alignment and domain information
>PRK06083 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK05863 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins Back     alignment and domain information
>PF14451 Ub-Mut7C: Mut7-C ubiquitin Back     alignment and domain information
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal Back     alignment and domain information
>PRK09601 GTP-binding protein YchF; Reviewed Back     alignment and domain information
>TIGR01687 moaD_arch MoaD family protein, archaeal Back     alignment and domain information
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes Back     alignment and domain information
>PRK11130 moaD molybdopterin synthase small subunit; Provisional Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PRK09169 hypothetical protein; Validated Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
1vj7_A393 Crystal Structure Of The Bifunctional Catalytic Fra 4e-68
3hvz_A78 Crystal Structure Of The Tgs Domain Of The Clolep_0 1e-12
2kmm_A73 Solution Nmr Structure Of The Tgs Domain Of Pg1808 7e-12
3nr1_A178 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 1e-11
3nqw_A179 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 3e-05
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 Back     alignment and structure 
Iteration: 1

 Score =  255 bits (652), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 242/419 (57%), Gaps = 51/419 (12%)
Query: 139 SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLH 198
            Y++  +   V++AL  A  AH  Q R+SGEP+I+HP++VA IL +L LD  ++A G LH
Sbjct: 18  KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLH 77
Query: 199 DTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFL 258
           D VEDT++ T + IE +FG  VR IV+G   V+KLGK++ K+    +    A++ R+M +
Sbjct: 78  DVVEDTDI-TLDNIEFDFGKDVRDIVDG---VTKLGKVEYKSHEEQL----AENHRKMLM 129
Query: 259 AMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELEN 318
           AM++++RVI+VKLADRLHNMRTL H+   KQ  I+ ET++++APLA  LG+ +IK ELE+
Sbjct: 130 AMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELED 189
Query: 319 LSFMYTNAEDYAKVKRRVADLYKEHEKELEE-ANKILMKKIEDDQFLDLMTVKTEIRSVC 377
           L+F Y N  ++ K+   + +  +E E  +++   KI     E   F D       +    
Sbjct: 190 LAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-------VYGRP 242
Query: 378 KEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWT 437
           K  YSIY+ +   +   +++  +  +R +++             Q   Y ++G +H +W 
Sbjct: 243 KHIYSIYRKMRDKKKRFDQIFDLIAIRCVME------------TQSDVYAMVGYIHELWR 290
Query: 438 PIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGR 497
           P+P   KDYIA PK NGYQS+HTT    +Y     +E+QIRT+EM  +AE G+AAH++ +
Sbjct: 291 PMPGRFKDYIAAPKANGYQSIHTT----VYGPKGPIEIQIRTKEMHQVAEYGVAAHWAYK 346
Query: 498 VFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSREFVDTI 556
                         +  RGK   +N A   + ++W+  + E Q+    N  + +FVD++
Sbjct: 347 --------------KGVRGK---VNQAEQKVGMNWIKELVELQD--ASNGDAVDFVDSL 386
>pdb|3HVZ|A Chain A, Crystal Structure Of The Tgs Domain Of The Clolep_03100 Protein From Clostridium Leptum, Northeast Structural Genomics Consortium Target Qlr13a Length = 78 Back     alignment and structure
>pdb|2KMM|A Chain A, Solution Nmr Structure Of The Tgs Domain Of Pg1808 From Porphyromonas Gingivalis. Northeast Structural Genomics Consortium Target Pgr122a (418-481) Length = 73 Back     alignment and structure
>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 Back     alignment and structure
>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 1e-156
3nr1_A178 HD domain-containing protein 3; stringent response 3e-74
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 1e-69
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 9e-34
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 1e-32
3hvz_A78 Uncharacterized protein; alpha-beta protein, struc 1e-30
2kmm_A73 Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy 1e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2eki_A93 DRG 1, developmentally-regulated GTP-binding prote 5e-05
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 2e-04
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 3e-04
1tke_A 224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 4e-04
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 Back     alignment and structure
 Score =  454 bits (1170), Expect = e-156
 Identities = 147/438 (33%), Positives = 242/438 (55%), Gaps = 56/438 (12%)

Query: 127 PERLWEDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGEL 185
                E++      Y++  +   V++AL  A  AH  Q R+SGEP+I+HP++VA IL +L
Sbjct: 5   INLTGEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADL 64

Query: 186 ELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSV 245
            LD  ++A G LHD VEDT++ T + IE +FG  VR IV+G   V+KLGK++ K    S 
Sbjct: 65  HLDAVTVACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDG---VTKLGKVEYK----SH 116

Query: 246 QDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAK 305
           ++  A++ R+M +AM++++RVI+VKLADRLHNMRTL H+   KQ  I+ ET++++APLA 
Sbjct: 117 EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH 176

Query: 306 LLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLD 365
            LG+ +IK ELE+L+F Y N  ++ K+   + +  +E E  +++    +     +     
Sbjct: 177 RLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQG--- 233

Query: 366 LMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQIC 425
              +  ++    K  YSIY+ +   +   +++  +  +R +++ +               
Sbjct: 234 ---LFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQS------------DV 278

Query: 426 YHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLI-PFLYESMFRLEVQIRTEEMDL 484
           Y ++G +H +W P+P   KDYIA PK NGYQS+HTT+  P        +E+QIRT+EM  
Sbjct: 279 YAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK-----GPIEIQIRTKEMHQ 333

Query: 485 IAERGIAAH--YSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEE 542
           +AE G+AAH  Y                    +G    +N A   + ++W+  + E Q+ 
Sbjct: 334 VAEYGVAAHWAYK-------------------KGVRGKVNQAEQKVGMNWIKELVELQDA 374

Query: 543 FVGNMTSREFVDTITRDL 560
             G+  + +FVD++    
Sbjct: 375 SNGD--AVDFVDSLEHHH 390
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 Back     alignment and structure
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 Back     alignment and structure
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78 Back     alignment and structure
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Length = 93 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query635
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 100.0
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 100.0
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 100.0
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 100.0
3nr1_A178 HD domain-containing protein 3; stringent response 99.98
3hvz_A78 Uncharacterized protein; alpha-beta protein, struc 99.81
1wwt_A88 Threonyl-tRNA synthetase, cytoplasmic; TGS domain, 99.48
2kmm_A73 Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy 99.38
2eki_A93 DRG 1, developmentally-regulated GTP-binding prote 99.21
1tke_A 224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 99.16
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 98.52
1wxq_A397 GTP-binding protein; structural genomics, riken st 98.49
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 98.42
1f0z_A66 THis protein; ubiquitin fold, transport protein; N 97.18
1tyg_B87 YJBS; alpha beta barrel, protein-protein complex, 97.14
2l32_A74 Small archaeal modifier protein 2; protein BIN; NM 96.97
1rws_A77 Hypothetical protein PF1061; residual dipolar coup 96.93
1ryj_A70 Unknown; beta/alpha protein, structural genomics, 96.9
2cu3_A64 Unknown function protein; thermus thermophilus HB8 96.9
2k5p_A78 THis protein, thiamine-biosynthesis protein; NESG, 96.75
2kl0_A73 Putative thiamin biosynthesis THis; structural gen 96.68
2hj1_A97 Hypothetical protein; structural genomics, PSI, pr 96.56
4a9a_A376 Ribosome-interacting GTPase 1; DRG-DFRP complex, r 96.46
2q5w_D77 Molybdopterin converting factor, subunit 1; MOCO, 96.14
1vjk_A98 Molybdopterin converting factor, subunit 1; struct 95.93
3po0_A89 Small archaeal modifier protein 1; ubiquitin-like 95.75
1fm0_D81 Molybdopterin convertin factor, subunit 1; molybde 95.14
2dby_A368 GTP-binding protein; GDP, structural genomics, NPP 94.72
2g1e_A90 Hypothetical protein TA0895; MOAD, molybdopterin, 94.09
1jal_A363 YCHF protein; nucleotide-binding fold, structural 93.18
2ohf_A396 Protein OLA1, GTP-binding protein 9; ATPase, GTPas 92.81
3rpf_C74 Molybdopterin converting factor, subunit 1 (MOAD); 92.34
3dwg_C93 9.5 kDa culture filtrate antigen CFP10A; sulfur ca 92.0
2l52_A99 Methanosarcina acetivorans SAMP1 homolog; beta-grA 91.56
1ni3_A392 YCHF GTPase, YCHF GTP-binding protein; structural 89.09
3dto_A223 BH2835 protein; all alpha-helical protein, structu 87.02
1v8c_A168 MOAD related protein; riken structural genomics/pr 86.38
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 84.06
2qjl_A99 URM1, ubiquitin-related modifier 1; ubiquitin-like 83.11
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Back     alignment and structure
Probab=100.00  E-value=2.1e-103  Score=845.94  Aligned_cols=377  Identities=37%  Similarity=0.613  Sum_probs=309.4

Q ss_pred             CChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhccccccC
Q 006686          125 DSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDT  204 (635)
Q Consensus       125 ~~~~~~~~~l~~~~~~~~~~~~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT  204 (635)
                      ++.+.+.+.+   ..|+++.+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||+||||
T Consensus         7 ~~~~~l~~~~---~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt   83 (393)
T 1vj7_A            7 LTGEEVVALA---AKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDT   83 (393)
T ss_dssp             CCHHHHHHHH---HHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHS
T ss_pred             CCHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcC
Confidence            5545555554   3789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhChHHHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccCC
Q 006686          205 NVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHM  284 (635)
Q Consensus       205 ~~~T~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~~  284 (635)
                      + +|.++|++.||++|+.||+||||++++..   .    .....|+|++||||+||++|+||++|||||||||||++..+
T Consensus        84 ~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~~---~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~  155 (393)
T 1vj7_A           84 D-ITLDNIEFDFGKDVRDIVDGVTKLGKVEY---K----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHL  155 (393)
T ss_dssp             S-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC--
T ss_pred             C-CCHHHHHHHhCHHHHHHHHHHHhcccCCc---c----cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhC
Confidence            8 89999999999999999999999887642   1    12346899999999999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 006686          285 PPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFL  364 (635)
Q Consensus       285 ~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~l  364 (635)
                      |+++|+++|+||++|||||||||||++||||||||||+||+|+.|+.|.++|.+.+.+++.+++.++..|++.|.+.   
T Consensus       156 ~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~---  232 (393)
T 1vj7_A          156 RKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQ---  232 (393)
T ss_dssp             ----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998875   


Q ss_pred             ccccceeEEEEEecChHHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 006686          365 DLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK  444 (635)
Q Consensus       365 ~~~~i~~~V~~R~K~~~SI~~Km~rk~~~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~k  444 (635)
                         |+.+.|+||+|++||||+||.|++.+|++|+|++|+||||+            +.+|||.++|+||+.|+|+|++||
T Consensus       233 ---gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~------------~~~dcy~vl~~i~~~~~~~~~~~k  297 (393)
T 1vj7_A          233 ---GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVME------------TQSDVYAMVGYIHELWRPMPGRFK  297 (393)
T ss_dssp             ---TCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEES------------SHHHHHHHHHHHHHHSCBCTTCCE
T ss_pred             ---CCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEEC------------CHHHHHHHHHHHHhcCCCCCCccc
Confidence               46889999999999999999999999999999999999976            468999999999999999999999


Q ss_pred             ccccCCCCCCCcceEEEEeccCCCCceeEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccchh
Q 006686          445 DYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNA  524 (635)
Q Consensus       445 DYIa~PK~nGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~~~  524 (635)
                      |||++||+||||||||+|.++   .+ ++||||||..||.|||+||++||+||++..         + .  .     ...
T Consensus       298 DyIa~PK~nGYqSlH~~v~~p---~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~---------~-~--~-----~~~  356 (393)
T 1vj7_A          298 DYIAAPKANGYQSIHTTVYGP---KG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVR---------G-K--V-----NQA  356 (393)
T ss_dssp             ETTTSCCTTCCCCEEEEEECS---SS-EEEEEEEEHHHHHHHHHTTCC--------------------------------
T ss_pred             ccccCCCcCCcceeEEEEEeC---Cc-eEEEEEecHHHHHHHHhhHHHHhccccCCC---------c-c--c-----chh
Confidence            999999999999999999753   35 999999999999999999999999997421         0 0  0     011


Q ss_pred             hHHHHHHHHHHHHHHHHhhhcCCChhhhHh
Q 006686          525 NIALRISWLNAIREWQEEFVGNMTSREFVD  554 (635)
Q Consensus       525 ~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~  554 (635)
                      ...++++||++|++||++.   .++.||+-
T Consensus       357 ~~~~~~~wl~~ll~~~~~~---~~~~ef~~  383 (393)
T 1vj7_A          357 EQKVGMNWIKELVELQDAS---NGDAVDFV  383 (393)
T ss_dssp             ------CHHHHHHHC---------------
T ss_pred             hhHHHHHHHHHHHHHHhcC---CCcHHHHH
Confidence            2235789999999999985   25667764
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Back     alignment and structure
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Back     alignment and structure
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Back     alignment and structure
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Back     alignment and structure
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 Back     alignment and structure
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} Back     alignment and structure
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Back     alignment and structure
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 Back     alignment and structure
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Back     alignment and structure
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A Back     alignment and structure
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4 Back     alignment and structure
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} Back     alignment and structure
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* Back     alignment and structure
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Back     alignment and structure
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A Back     alignment and structure
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D Back     alignment and structure
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Back     alignment and structure
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A Back     alignment and structure
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Back     alignment and structure
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori} Back     alignment and structure
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A Back     alignment and structure
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans} Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1 Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 635
d1vj7a1192 a.211.1.1 (A:5-196) Stringent response-like protei 2e-51
d1vj7a2175 d.218.1.8 (A:197-371) Stringent response-like prot 8e-22
d2be3a1203 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase 1e-17
d1wxqa276 d.15.10.2 (A:320-395) GTP-binding protein PH0525 { 2e-17
d1nyra259 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS 1e-15
d1tkea162 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS 2e-15
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score =  173 bits (440), Expect = 2e-51
 Identities = 90/194 (46%), Positives = 131/194 (67%), Gaps = 8/194 (4%)

Query: 132 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES 191
           E +     Y++  +   V++AL  A  AH  Q R+SGEP+I+HP++VA IL +L LD  +
Sbjct: 7   EVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVT 66

Query: 192 IAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKAD 251
           +A G LHD VEDT++ T + IE +FG  VR IV+G TK+ K        E  S ++  A+
Sbjct: 67  VACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDGVTKLGK-------VEYKSHEEQLAE 118

Query: 252 DLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQ 311
           + R+M +AM++++RVI+VKLADRLHNMRTL H+   KQ  I+ ET++++APLA  LG+ +
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178

Query: 312 IKSELENLSFMYTN 325
           IK ELE+L+F Y N
Sbjct: 179 IKWELEDLAFRYLN 192
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 Back     information, alignment and structure
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76 Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query635
d1vj7a1192 Stringent response-like protein RelA N-terminal do 100.0
d1vj7a2175 Stringent response-like protein RelA domain 2 {Str 100.0
d2be3a1203 Putative GTP pyrophosphokinase SP1097 {Streptococc 99.97
d1tkea162 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.63
d1nyra259 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.58
d1wxqa276 GTP-binding protein PH0525 {Pyrococcus horikoshii 99.4
d1zud2165 Thiamin biosynthesis sulfur carrier protein ThiS { 97.03
d1tygb_65 Thiamin biosynthesis sulfur carrier protein ThiS { 95.59
d2cu3a163 Uncharacterised protein TTHA0675 {Thermus thermoph 95.51
d1vjka_88 Molybdopterin synthase subunit MoaD {Pyrococcus fu 95.08
d1rwsa_68 Hypothetical protein PF1061 {Archaeon Pyrococcus f 95.01
d2hj1a177 Hypothetical protein HI0395 {Haemophilus influenza 94.67
d1ni3a282 YchF GTP-binding protein, C-terminal domain {Fissi 87.71
d1jala285 YchF GTP-binding protein, C-terminal domain {Haemo 85.55
d1v8ca187 MoaD-related protein, N-terminal domain {Thermus t 84.77
d1ryja_70 Hypothetical protein MTH1743 {Archaeon Methanobact 84.29
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=2.5e-54  Score=422.54  Aligned_cols=191  Identities=46%  Similarity=0.727  Sum_probs=164.0

Q ss_pred             CCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhcccccc
Q 006686          124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED  203 (635)
Q Consensus       124 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvED  203 (635)
                      +++.|.+...+.   .|+++.|.+++.+|+.||.++|.||+|+||+|||+||++||.+|+++++|.++++||||||++||
T Consensus         2 ~~~~e~~l~~~~---~yl~~~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~ed   78 (192)
T d1vj7a1           2 NLTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVED   78 (192)
T ss_dssp             CCCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcCChHHhhhhheechhhh
Confidence            566666666654   68999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHhChHHHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccC
Q 006686          204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH  283 (635)
Q Consensus       204 T~~~T~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~  283 (635)
                      |+ +|.++|++.||++|+.+|+++|+++.+....       ....+++++|||+++|.+|+||++||||||||||||+..
T Consensus        79 t~-~t~e~I~~~FG~~Va~lV~~ltk~~~~~~~~-------~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~  150 (192)
T d1vj7a1          79 TD-ITLDNIEFDFGKDVRDIVDGVTKLGKVEYKS-------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKH  150 (192)
T ss_dssp             SS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC-
T ss_pred             ch-hHHHHHHHhcchhHHHHHHHHHhhccccccc-------cchHHHHHHHHHHHhhccCceeehhHHHHHHhhcccccc
Confidence            98 8999999999999999999999987765321       234578899999999999999999999999999999999


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccC
Q 006686          284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTN  325 (635)
Q Consensus       284 ~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDLaf~~l~  325 (635)
                      +|+++++++|+||+++|+|||+|||+|+||||||||||+|||
T Consensus       151 ~~~~k~~~~a~Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~  192 (192)
T d1vj7a1         151 LRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN  192 (192)
T ss_dssp             -----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999986
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure