Citrus Sinensis ID: 006690

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-----
MITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCTYNGL
cHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccHHHHHccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHcccccEEEEEcccccccccEEEcccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEEHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHcccccccccEccccccccEEcccccccccccccEEEcccHHHccccccccccccccccccccccccccccccccccEccccccccccccccccccccccHHHcccccccHHHHccHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccHHHHHHHHHHHccccccccccEcccccccccccccccccccccccccccHccHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEcHHHHHHccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccc
mitalqksesdpsFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTscqndessprAITSVLLSKNSEQLPEAVTKLVDSTlssndeiniddIRRSHLsswhrfghfvrsnrnqhwgirrkpkTELFKELKltnrglghdddlsmersedrceaqtvddkscitssdsssaiTKCKRWKQLLQfdkshrpafygiwpkkshivgprhplmkdpdldydidsdeeweeeepgeslsdcekdgdeegcskaddedesedgffvpdgylsedegvqvdrmeidlsaedtksspsykqeleskesCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPllmaedlsgtsnMEQKCLQAlsirpfpgdlhVEITVDimddenekdclsngkgsttlisesdlPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIElgyspdknggrakGIATFfskrclppdgkslnpneasplsslkpgsavhgqhgctyngl
mitalqksesdpsfINDLMKASKKLGKVLSEASIRVLVDSMLKKNgaeivekdakreEKILIKqleknkrevekekkrmdceqqkeklhserelkrlqeeaerderrrekeeadirkqirkqqeeadkeqrhrekeeaemKKKLALQKQASMMERFLKRSKILtscqndessprAITSVLlsknseqlPEAVTKLVdstlssndeiNIDDIRRSHLSSWHRfghfvrsnrnqhwgirrkpktelfkelkltnrglghdddlsmERSEDRCeaqtvddkscitssdsssaitKCKRWKQLLQFDKSHRPAFYgiwpkkshivgprhplmkDPDLDYDIDSDEEWEEeepgeslsdcekdGDEEGCSkaddedesedgffvpdgylsedegVQVDRMEIDlsaedtksspsykqeleskescaLVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGsttlisesdlpAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVReisdfnfaenrwQVKREILIElgyspdknggrAKGIATFFSKRCLPPDGKSLNPNEASplsslkpgsavhgqhgctyngl
MITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLeknkrevekekkrMDCEQQKEKLHSERELKRLQeeaerderrrekeeadirkQIRKQQEEADKEQRHRekeeaemkkklalqkqaSMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRGLGHDDDLSMERSEDRCEAQTVddkscitssdsssaitkckRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLdydidsdeeweeeepgeslsdceKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCTYNGL
***************************VLSEASIRVLVDSML*******************************************************************************************************************************************************************INIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRK**TELFK*******************************************ITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIV*****************************************************************************************************V**RKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMD***************TLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRC************************************
*****************************************************************************************************************************************************************************************************************************************************************************************************KRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEE***************************EDGFFVPDGYLSE*********************************CALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSI***************************************LPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIEL**********************************************************
**********DPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKN**********************ERELKRL*********************************************KLALQKQASMMERFLKRSKILT*********RAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRGLGHDDDL*****************************TKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDS**********************************EDGFFVPDGYLSEDEGVQVDRMEIDLSA********************LVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCTYNGL
*I***QKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEK**************H********************************************EKEEAEMKKKLALQKQASMMERFLKRS*******************************************DEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKL*************************************SAITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEW*******************************DGFFVPDGYLSED********************PSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVD********************ISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSP*******KG********CL***********************************
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MITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKLALQKQASMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCTYNGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query635 2.2.26 [Sep-21-2011]
Q9SXY0815 Chromatin assembly factor yes no 0.940 0.732 0.542 1e-160
B2ZX90940 Chromatin assembly factor yes no 0.929 0.627 0.427 1e-112
A0JMT0885 Chromatin assembly factor N/A no 0.143 0.102 0.585 1e-12
Q5R1T0937 Chromatin assembly factor yes no 0.138 0.093 0.553 2e-11
A6QLA6964 Chromatin assembly factor yes no 0.140 0.092 0.574 3e-11
Q98TA5896 Chromatin assembly factor N/A no 0.203 0.143 0.409 6e-10
Q9QWF0911 Chromatin assembly factor yes no 0.195 0.136 0.485 1e-09
A0JMK9863 Chromatin assembly factor yes no 0.140 0.103 0.574 2e-09
Q13111956 Chromatin assembly factor yes no 0.140 0.093 0.553 3e-09
>sp|Q9SXY0|FAS1_ARATH Chromatin assembly factor 1 subunit FAS1 OS=Arabidopsis thaliana GN=FAS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  565 bits (1457), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 336/619 (54%), Positives = 440/619 (71%), Gaps = 22/619 (3%)

Query: 1   MITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKI 60
           M+ ALQ+ E++  + +DL KA++KLGK+LSE  IR  +D+M++KN +E+ EKD+KREEK+
Sbjct: 188 MLAALQREETEKLWRSDLSKAAEKLGKILSEVDIRSFMDNMMQKNSSEMAEKDSKREEKL 247

Query: 61  LIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIR 120
           L+KQLEKN+ E EKEKKRM+ +  KEKL  E+E K LQ+ A  DE  +EKEE + RK+I+
Sbjct: 248 LLKQLEKNRCEAEKEKKRMERQVLKEKLQQEKEQKLLQK-AIVDENNKEKEETESRKRIK 306

Query: 121 KQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTSCQNDESSPRAITSVL 180
           KQQ+E++KEQ+ REKE+AE+KK+L +QKQAS+MERFLK+SK  +  Q    S       L
Sbjct: 307 KQQDESEKEQKRREKEQAELKKQLQVQKQASIMERFLKKSKDSSLTQPKLPSSEVTAQEL 366

Query: 181 LSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKP 240
                E     V + +D+  S+  E  +DDIRR H +SW + GH + S++ +HWG+RR+P
Sbjct: 367 SCTKHENEIGKVVQAIDNAFSTTCEATVDDIRREHFASWRQLGHLLSSSK-KHWGMRRQP 425

Query: 241 KTELFKELKL-TNRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKRWKQL 299
           K+ELF +LKL TN G+  D + +ME+  D CE    D + C     SSS   K +R KQL
Sbjct: 426 KSELFPKLKLSTNSGVTSDGEPNMEKQGDGCEENNFDGRQC---KPSSSNRKKSRRVKQL 482

Query: 300 LQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDG 359
           LQFDKS RP FYGIWP +S +V PR PL KDP+LDY++DSDEEWEEEE GESLSDCEKD 
Sbjct: 483 LQFDKSCRPGFYGIWPSQSQVVKPRRPLQKDPELDYEVDSDEEWEEEEAGESLSDCEKDE 542

Query: 360 D---EEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELES 416
           D   EEGCSKADDED+SED F VPDGYLSEDEGVQVDRM+ID S +D  ++ S KQ+ ES
Sbjct: 543 DESLEEGCSKADDEDDSEDDFMVPDGYLSEDEGVQVDRMDIDPSEQDANTT-SSKQDQES 601

Query: 417 KESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALS 476
            E CAL++Q+K+L +LT+ AL+K QPLII NL HEKV LL A+DL GT  +EQ CL+AL 
Sbjct: 602 PEFCALLQQQKHLQNLTDHALKKTQPLIICNLTHEKVSLLAAKDLEGTQKVEQICLRALM 661

Query: 477 IRPFPGDLHVEITV-DIMDDENEKDCLSNGKGS------TTLISESDLPAIVSVIQSCST 529
           +R FP    +EI++ DI D++ E    S  + +        +I +SDL  +VS IQSCS 
Sbjct: 662 VRQFPWSSLIEISINDIQDEDQEASKFSCSQSTPPSNSKAKIIPDSDLLTVVSTIQSCSQ 721

Query: 530 NMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGY--SPDKNGGR 587
            +N+++E LQQKFP + + +LR KVREISDF   ++RWQVK+E+L +LG   SPDK G R
Sbjct: 722 GINRVVETLQQKFPDVPKTKLRQKVREISDFE--DSRWQVKKEVLTKLGLSPSPDKGGKR 779

Query: 588 -AKGIATFFSKRCLPPDGK 605
             K I+TFFSKRCLPP  K
Sbjct: 780 LPKTISTFFSKRCLPPSTK 798
Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. Assembles histone octamers onto replicating DNA in vitro. Required for several aspects of development, including seedling growth and leaf hair differentiation. Plays a critical role in the organization of shoot apical meristem (SAM) and root apical meristem (RAM) during postembryonic development by facilitating stable maintenance of gene expression states. Seems not required to maintain transcriptional repression of heterochromatic genes. Involved in heterologous recombination. May repress endocycle.
Arabidopsis thaliana (taxid: 3702)
>sp|B2ZX90|FAS1_ORYSJ Chromatin assembly factor 1 subunit FSM OS=Oryza sativa subsp. japonica GN=FSM PE=2 SV=1 Back     alignment and function description
>sp|A0JMT0|CA1AB_XENLA Chromatin assembly factor 1 subunit A-B OS=Xenopus laevis GN=chaf1a-b PE=2 SV=2 Back     alignment and function description
>sp|Q5R1T0|CAF1A_CHICK Chromatin assembly factor 1 subunit A OS=Gallus gallus GN=CHAF1A PE=1 SV=1 Back     alignment and function description
>sp|A6QLA6|CAF1A_BOVIN Chromatin assembly factor 1 subunit A OS=Bos taurus GN=CHAF1A PE=2 SV=1 Back     alignment and function description
>sp|Q98TA5|CA1AA_XENLA Chromatin assembly factor 1 subunit A-A OS=Xenopus laevis GN=chaf1a-a PE=2 SV=1 Back     alignment and function description
>sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A OS=Mus musculus GN=Chaf1a PE=1 SV=1 Back     alignment and function description
>sp|A0JMK9|CAF1A_DANRE Chromatin assembly factor 1 subunit A OS=Danio rerio GN=chaf1a PE=1 SV=1 Back     alignment and function description
>sp|Q13111|CAF1A_HUMAN Chromatin assembly factor 1 subunit A OS=Homo sapiens GN=CHAF1A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query635
317106648 846 JHL23J11.8 [Jatropha curcas] 0.990 0.743 0.640 0.0
255547450 823 chromatin assembly factor 1, subunit A, 0.984 0.759 0.638 0.0
147836503 872 hypothetical protein VITISV_008038 [Viti 0.981 0.714 0.589 0.0
449442241 831 PREDICTED: chromatin assembly factor 1 s 0.981 0.749 0.568 1e-178
449477758 831 PREDICTED: LOW QUALITY PROTEIN: chromati 0.981 0.749 0.568 1e-178
356566959 838 PREDICTED: uncharacterized protein LOC10 0.966 0.732 0.534 1e-161
15220980 815 chromatin assembly factor-1 (FASCIATA1) 0.940 0.732 0.542 1e-158
356530013 844 PREDICTED: uncharacterized protein LOC10 0.979 0.736 0.526 1e-156
334183657 807 chromatin assembly factor-1 (FASCIATA1) 0.927 0.729 0.534 1e-155
297841057 814 hypothetical protein ARALYDRAFT_894101 [ 0.935 0.729 0.539 1e-153
>gi|317106648|dbj|BAJ53153.1| JHL23J11.8 [Jatropha curcas] Back     alignment and taxonomy information
 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/648 (64%), Positives = 510/648 (78%), Gaps = 19/648 (2%)

Query: 1   MITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKI 60
           MI+ALQ SE+  S   DLM+AS KL K L EA IR LVD  L+KNG    +++AK E+K+
Sbjct: 201 MISALQNSETYQSCRTDLMRASGKLAKALKEAEIRSLVDGTLQKNGTVKADQEAKLEQKV 260

Query: 61  LIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIR 120
           LIKQLEKNKREVEKEKKRMD E QKEK   E+E KRLQEEAE+DE+RREKEE+++R+Q++
Sbjct: 261 LIKQLEKNKREVEKEKKRMDLELQKEKRQIEKEQKRLQEEAEKDEKRREKEESEMRRQLK 320

Query: 121 KQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTSCQNDESSPRAITSVL 180
           KQQ+E +KEQRH+EKEEA+MK++ A++KQAS+MERFLKRSK  + CQN+ +S      VL
Sbjct: 321 KQQKEVEKEQRHKEKEEAKMKRQNAIKKQASIMERFLKRSKTDSPCQNEGTSIEETAPVL 380

Query: 181 LSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKP 240
             K SE++PEAVT  +D TLSSND+I IDDIR+ HLSSWH  GH +RSNR QHW IR+KP
Sbjct: 381 SGKKSEKMPEAVTMAMDCTLSSNDDIRIDDIRKLHLSSWHHLGHAIRSNRKQHWSIRQKP 440

Query: 241 KTELFKELKLTN-RGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKRWKQL 299
           KTELFKELKLT  R L HD +L +E+ E     Q+ DD+ C T+ +SS    K KR K+L
Sbjct: 441 KTELFKELKLTTARELSHDGELIVEKLESEWGEQSSDDRLCATNLESSLNDKKWKRRKKL 500

Query: 300 LQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDG 359
           LQFDKSHRPAFYGIWPKKSH+VGPRHP  K+PDLDYD+DSDEEWEEE+PGESLSDC+KD 
Sbjct: 501 LQFDKSHRPAFYGIWPKKSHVVGPRHPFRKEPDLDYDVDSDEEWEEEDPGESLSDCDKDD 560

Query: 360 D----EEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELE 415
           +    EEGCSK DDE+ESEDGFFVPDGYLSE+EGVQVDRME +LS E  + SPS KQ+ E
Sbjct: 561 EEQSLEEGCSK-DDEEESEDGFFVPDGYLSENEGVQVDRMETELSVEKARGSPSSKQDSE 619

Query: 416 SKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQAL 475
           S+E C L++Q+KYL+++TE AL+KNQPLIILNLMHEKVPL +AEDL+GTS +E  CL+AL
Sbjct: 620 SEEFCKLLQQQKYLNNVTETALRKNQPLIILNLMHEKVPLFVAEDLTGTSKLEWTCLEAL 679

Query: 476 SIRPFPGDLHVEI-TVDIMDDENEKDCLSNGKGSTTLIS------ESDLPAIVSVIQSCS 528
            +R FPG   +EI TVDI  +  E  C+SNGK ++T +S      E D+P +VS IQSCS
Sbjct: 680 RVRKFPGGPSMEISTVDIQAEAREA-CVSNGKTNSTHVSPAAAIPELDMPIVVSTIQSCS 738

Query: 529 TNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELG--YSPDKNGG 586
            ++NK++++LQQKFP++S++QLRNKVREISD  F +NRWQVK+E+L E+G   SP K+ G
Sbjct: 739 QSINKVVDSLQQKFPTVSKSQLRNKVREISD--FVDNRWQVKKEVLNEVGISISPRKSRG 796

Query: 587 RAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPG-SAVHGQHGCTYN 633
           R   I+TFFSKRCLPP GKS+NPNE SP SSLK G S V GQ GCTY+
Sbjct: 797 RMPNISTFFSKRCLPPTGKSMNPNENSPESSLKAGCSEVEGQRGCTYS 844

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547450|ref|XP_002514782.1| chromatin assembly factor 1, subunit A, putative [Ricinus communis] gi|223545833|gb|EEF47336.1| chromatin assembly factor 1, subunit A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147836503|emb|CAN77600.1| hypothetical protein VITISV_008038 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442241|ref|XP_004138890.1| PREDICTED: chromatin assembly factor 1 subunit FAS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449477758|ref|XP_004155114.1| PREDICTED: LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit FAS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356566959|ref|XP_003551692.1| PREDICTED: uncharacterized protein LOC100802884 [Glycine max] Back     alignment and taxonomy information
>gi|15220980|ref|NP_176725.1| chromatin assembly factor-1 (FASCIATA1) [Arabidopsis thaliana] gi|75213311|sp|Q9SXY0.1|FAS1_ARATH RecName: Full=Chromatin assembly factor 1 subunit FAS1; Short=CAF-1 subunit FAS1; AltName: Full=CAF-1 p150 homolog; AltName: Full=Protein FASCIATA 1 gi|4887626|dbj|BAA77811.1| FAS1 [Arabidopsis thaliana] gi|22022526|gb|AAM83221.1| At1g65470/F5I14_33 [Arabidopsis thaliana] gi|332196258|gb|AEE34379.1| chromatin assembly factor-1 (FASCIATA1) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356530013|ref|XP_003533580.1| PREDICTED: uncharacterized protein LOC100811035 [Glycine max] Back     alignment and taxonomy information
>gi|334183657|ref|NP_001185320.1| chromatin assembly factor-1 (FASCIATA1) [Arabidopsis thaliana] gi|332196259|gb|AEE34380.1| chromatin assembly factor-1 (FASCIATA1) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841057|ref|XP_002888410.1| hypothetical protein ARALYDRAFT_894101 [Arabidopsis lyrata subsp. lyrata] gi|297334251|gb|EFH64669.1| hypothetical protein ARALYDRAFT_894101 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query635
TAIR|locus:2034183815 FAS1 "FASCIATA 1" [Arabidopsis 0.940 0.732 0.452 6.6e-129
UNIPROTKB|B2ZX90940 FSM "Chromatin assembly factor 0.874 0.590 0.381 9.9e-87
UNIPROTKB|E1BYD9934 CHAF1A "Chromatin assembly fac 0.262 0.178 0.301 2e-11
UNIPROTKB|F1P5R3937 CHAF1A "Chromatin assembly fac 0.262 0.178 0.301 2e-11
UNIPROTKB|Q5R1T0937 CHAF1A "Chromatin assembly fac 0.262 0.178 0.295 2.6e-11
MGI|MGI:1351331911 Chaf1a "chromatin assembly fac 0.141 0.098 0.440 4e-10
UNIPROTKB|A6QLA6964 CHAF1A "Chromatin assembly fac 0.141 0.093 0.419 4e-10
RGD|1590865907 Chaf1a "chromatin assembly fac 0.141 0.099 0.419 1.8e-09
UNIPROTKB|A0JMT0885 chaf1a-b "Chromatin assembly f 0.177 0.127 0.338 2.3e-09
UNIPROTKB|F1S7L7963 CHAF1A "Uncharacterized protei 0.141 0.093 0.408 1.3e-08
TAIR|locus:2034183 FAS1 "FASCIATA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
 Identities = 280/619 (45%), Positives = 372/619 (60%)

Query:     1 MITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKI 60
             M+ ALQ+ E++  + +DL KA++KLGK+LSE  IR  +D+M++KN +E+ EKD+KREEK+
Sbjct:   188 MLAALQREETEKLWRSDLSKAAEKLGKILSEVDIRSFMDNMMQKNSSEMAEKDSKREEKL 247

Query:    61 LIKQLXXXXXXXXXXXXXMDCEQQKEKLHSERELKRLQXXXXXXXXXXXXXXXXXXXQIR 120
             L+KQL             M+ +  KEKL  E+E K LQ                   +I+
Sbjct:   248 LLKQLEKNRCEAEKEKKRMERQVLKEKLQQEKEQKLLQKAIVDENNKEKEETESRK-RIK 306

Query:   121 KQQEEADKEQRHRXXXXXXXXXXXXXXXXXSMMERFLKRSKILTSCQNDESSPRAITSVL 180
             KQQ+E++KEQ+ R                 S+MERFLK+SK  +  Q    S       L
Sbjct:   307 KQQDESEKEQKRREKEQAELKKQLQVQKQASIMERFLKKSKDSSLTQPKLPSSEVTAQEL 366

Query:   181 LSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKP 240
                  E     V + +D+  S+  E  +DDIRR H +SW + GH + S++ +HWG+RR+P
Sbjct:   367 SCTKHENEIGKVVQAIDNAFSTTCEATVDDIRREHFASWRQLGHLLSSSK-KHWGMRRQP 425

Query:   241 KTELFKELKL-TNRGLGHDDDLSMERSEDRCEAQTVXXXXXXXXXXXXXXXXXXXRWKQL 299
             K+ELF +LKL TN G+  D + +ME+  D CE                       R KQL
Sbjct:   426 KSELFPKLKLSTNSGVTSDGEPNMEKQGDGCEENNFDGRQCKPSSSNRKKSR---RVKQL 482

Query:   300 LQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLXXXXXXXXXXXXXXXXXXXXXXXKDG 359
             LQFDKS RP FYGIWP +S +V PR PL KDP+L                       KD 
Sbjct:   483 LQFDKSCRPGFYGIWPSQSQVVKPRRPLQKDPELDYEVDSDEEWEEEEAGESLSDCEKDE 542

Query:   360 DE---EGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELES 416
             DE   EGCSKADDED+SED F VPDGYLSEDEGVQVDRM+ID S +D  ++ S KQ+ ES
Sbjct:   543 DESLEEGCSKADDEDDSEDDFMVPDGYLSEDEGVQVDRMDIDPSEQDANTTSS-KQDQES 601

Query:   417 KESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALS 476
              E CAL++Q+K+L +LT+ AL+K QPLII NL HEKV LL A+DL GT  +EQ CL+AL 
Sbjct:   602 PEFCALLQQQKHLQNLTDHALKKTQPLIICNLTHEKVSLLAAKDLEGTQKVEQICLRALM 661

Query:   477 IRPFPGDLHVEITV-DIMDDENEKD---CLSNGKGSTT---LISESDLPAIVSVIQSCST 529
             +R FP    +EI++ DI D++ E     C  +   S +   +I +SDL  +VS IQSCS 
Sbjct:   662 VRQFPWSSLIEISINDIQDEDQEASKFSCSQSTPPSNSKAKIIPDSDLLTVVSTIQSCSQ 721

Query:   530 NMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSP--DKNGGR 587
              +N+++E LQQKFP + + +LR KVREISDF   ++RWQVK+E+L +LG SP  DK G R
Sbjct:   722 GINRVVETLQQKFPDVPKTKLRQKVREISDFE--DSRWQVKKEVLTKLGLSPSPDKGGKR 779

Query:   588 A-KGIATFFSKRCLPPDGK 605
               K I+TFFSKRCLPP  K
Sbjct:   780 LPKTISTFFSKRCLPPSTK 798
GO:0005634 "nucleus" evidence=ISM
GO:0006334 "nucleosome assembly" evidence=IDA
GO:0009934 "regulation of meristem structural organization" evidence=IMP
GO:0033186 "CAF-1 complex" evidence=IPI
GO:0042393 "histone binding" evidence=ISS
GO:0031507 "heterochromatin assembly" evidence=RCA;IMP
GO:0006310 "DNA recombination" evidence=IEP;IMP
GO:0006325 "chromatin organization" evidence=IDA
GO:0008283 "cell proliferation" evidence=IMP
GO:0010026 "trichome differentiation" evidence=IMP
GO:0048366 "leaf development" evidence=IMP
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA;IMP
GO:0009555 "pollen development" evidence=IGI;RCA
GO:0045787 "positive regulation of cell cycle" evidence=IGI;RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
UNIPROTKB|B2ZX90 FSM "Chromatin assembly factor 1 subunit FSM" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYD9 CHAF1A "Chromatin assembly factor 1 subunit A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5R3 CHAF1A "Chromatin assembly factor 1 subunit A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R1T0 CHAF1A "Chromatin assembly factor 1 subunit A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1351331 Chaf1a "chromatin assembly factor 1, subunit A (p150)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLA6 CHAF1A "Chromatin assembly factor 1 subunit A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1590865 Chaf1a "chromatin assembly factor 1, subunit A (p150)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A0JMT0 chaf1a-b "Chromatin assembly factor 1 subunit A-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1S7L7 CHAF1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SXY0FAS1_ARATHNo assigned EC number0.54280.94010.7325yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
pfam1225376 pfam12253, CAF1A, Chromatin assembly factor 1 subu 3e-24
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 4e-07
TIGR02794346 TIGR02794, tolA_full, TolA protein 9e-07
PLN02372455 PLN02372, PLN02372, violaxanthin de-epoxidase 3e-06
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 1e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 6e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 7e-05
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 9e-05
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 1e-04
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 1e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 2e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 2e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 2e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 4e-04
smart01071154 smart01071, CDC37_N, Cdc37 N terminal kinase bindi 5e-04
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 6e-04
PRK05035695 PRK05035, PRK05035, electron transport complex pro 6e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 7e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-04
PRK12585197 PRK12585, PRK12585, putative monovalent cation/H+ 8e-04
TIGR02794346 TIGR02794, tolA_full, TolA protein 0.001
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
pfam09756189 pfam09756, DDRGK, DDRGK domain 0.001
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.002
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
COG3064387 COG3064, TolA, Membrane protein involved in colici 0.002
TIGR01554384 TIGR01554, major_cap_HK97, phage major capsid prot 0.002
pfam09731493 pfam09731, Mitofilin, Mitochondrial inner membrane 0.002
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.003
pfam07946322 pfam07946, DUF1682, Protein of unknown function (D 0.003
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.003
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.004
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.004
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
pfam05266190 pfam05266, DUF724, Protein of unknown function (DU 0.004
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A Back     alignment and domain information 
 Score = 96.1 bits (240), Expect = 3e-24
 Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 7/82 (8%)

Query: 297 KQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKD-PDLDYDIDSDEEWEEEEPGESLSDC 355
            +LLQF ++ RP +YG W K S ++ PR+PL +D P LDYD DSD EWEEEE GE L + 
Sbjct: 1   MKLLQFYENVRPPYYGTWTKPSSVILPRNPLSQDLPGLDYDYDSDAEWEEEEEGEDL-ES 59

Query: 356 EKDGDEEGCSKADDEDESEDGF 377
           E + DEE     +D+D+  DGF
Sbjct: 60  EDEEDEE-----EDDDDDMDGF 76

The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A. The A domain is uniquely required for the progression of S phase in mouse cells, independent of its ability to promote histone deposition but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints. Length = 76
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family Back     alignment and domain information
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 635
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 100.0
PF1225377 CAF1A: Chromatin assembly factor 1 subunit A; Inte 99.95
KOG4363270 consensus Putative growth response protein [Signal 99.11
PF11600216 CAF-1_p150: Chromatin assembly factor 1 complex p1 98.95
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 98.69
PF11600216 CAF-1_p150: Chromatin assembly factor 1 complex p1 97.68
PF15539292 CAF1-p150_C2: CAF1 complex subunit p150, region bi 97.46
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.53
PTZ001212084 MAEBL; Provisional 96.13
KOG2891445 consensus Surface glycoprotein [General function p 96.1
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 96.08
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.64
PF15236157 CCDC66: Coiled-coil domain-containing protein 66 95.54
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 95.28
KOG3054299 consensus Uncharacterized conserved protein [Funct 95.08
PF13904264 DUF4207: Domain of unknown function (DUF4207) 95.05
KOG1144 1064 consensus Translation initiation factor 5B (eIF-5B 94.85
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 94.62
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 94.3
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 93.74
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 92.21
KOG1144 1064 consensus Translation initiation factor 5B (eIF-5B 92.16
KOG3054299 consensus Uncharacterized conserved protein [Funct 91.73
COG3064387 TolA Membrane protein involved in colicin uptake [ 91.35
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 90.12
KOG2072988 consensus Translation initiation factor 3, subunit 88.96
PF07946321 DUF1682: Protein of unknown function (DUF1682); In 88.88
PF07946321 DUF1682: Protein of unknown function (DUF1682); In 87.77
PF10446 458 DUF2457: Protein of unknown function (DUF2457); In 86.19
PF15236157 CCDC66: Coiled-coil domain-containing protein 66 83.96
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 82.07
KOG4661940 consensus Hsp27-ERE-TATA-binding protein/Scaffold 81.72
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 80.96
KOG2072988 consensus Translation initiation factor 3, subunit 80.47
KOG3654708 consensus Uncharacterized CH domain protein [Cytos 80.3
PRK00106535 hypothetical protein; Provisional 80.04
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-74  Score=626.42  Aligned_cols=604  Identities=41%  Similarity=0.621  Sum_probs=485.0

Q ss_pred             CccccccCCCChhhhhHHHHHHHHHhhhhchhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006690            1 MITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMD   80 (635)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~~~~k~~~~~~~k~~~~~ek~~~k~~ek~~k~~ekE~~~~~   80 (635)
                      |.+|++.++...+|..|+.++..++++.++.++||+..+.|.+||+..+.-+.-.+.++++.||+.|...+.+|+.++++
T Consensus       188 ~p~a~~~sevl~s~~~~~sSs~~~~~~~sdts~~~~~s~q~p~k~~s~~~pk~tk~p~~l~~KQ~rk~meEreK~R~erE  267 (811)
T KOG4364|consen  188 MPAALQRSEVLKSWRSDLSSSAEKLGKISDTSDIRSFSDQMPQKNSSEMAPKDTKRPEKLLLKQLRKNMEEREKERKERE  267 (811)
T ss_pred             CcccccHHHHHhhccccchhhHhhhhccCCccccCcccccccccCCCcCCCCCCCcchhHHHHHHHHhHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999988776666555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006690           81 CEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRS  160 (635)
Q Consensus        81 ~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~~~k~~~e~~ke~kr~~kee~~~kk~~~~~kqa~~m~~Ffkk~  160 (635)
                      +. ..++.+.+...+++++++.++++.++|++++++|..+|+|++-|+|+||++.|+++++|++..+|++.+|++|..+.
T Consensus       268 r~-~leeKrlk~~~~~eek~~~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~Erkee~~  346 (811)
T KOG4364|consen  268 RQ-VLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIMERKEEKS  346 (811)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43 44555556666777888999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCCccCCCCCCCccccccccccCCCCcchhhhhhccccccccCCCCCchhhhhhhcchhhhhhhhhhcccccccccccCc
Q 006690          161 KILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKP  240 (635)
Q Consensus       161 k~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~D~~L~~~~~~~~~~i~r~~~~~w~~l~~~~r~~r~~~~g~r~~P  240 (635)
                      ..+.-......+..-.+...-+......+..+-..+|--++..+..+...|+..++..|..+..+.++ ++.+||.++-|
T Consensus       347 rk~deerkK~e~ke~ea~E~rkkr~~aei~Kffqk~~~k~~~~~~a~~s~~~f~pFeikd~M~lapi~-s~~~~~~~rsq  425 (811)
T KOG4364|consen  347 RKSDEERKKLESKEVEAQELRKKRHEAEIGKFFQKIDNKFSTTCEATVSDIRFEPFEIKDQMGLAPIS-SKKHWGMRRSQ  425 (811)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhcccccccCCcccccccccccccchhhcccccccee-hhccchhhhhh
Confidence            75544322222211111112222233345555667787776777888899999999999999765555 58899999999


Q ss_pred             hhhhhhhcccc-CCCCCCCCCcchhhhhhhhcccccCcccccccCCCCcccccccc-cceEEEecCCCCCCceeeecCCC
Q 006690          241 KTELFKELKLT-NRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKR-WKQLLQFDKSHRPAFYGIWPKKS  318 (635)
Q Consensus       241 k~e~fk~lkl~-~~~~~~d~el~~e~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~r-~~K~l~F~en~RPpy~GT~~k~s  318 (635)
                      ..+||.-++|. .++.+.+.++.+++-.+++....+++..|....-   ...+..+ ++|||||++|+||+|||||+++|
T Consensus       426 ld~Lf~r~pls~~~dvk~q~e~~~e~~~d~~~~adf~~sa~kpve~---e~~k~r~mKaKlLqF~~NrRP~YyGTWrKKS  502 (811)
T KOG4364|consen  426 LDELFPRLPLSTNSDVKSQGEPNMEKQGDGCEEADFDGSACKPVES---ERKKSRRMKAKLLQFDKNRRPGYYGTWRKKS  502 (811)
T ss_pred             hhhhcccCCCcccccccccCCccccccCCcceecccccccceeecc---CCcccchhHHHHhhhccccCCcccccccccc
Confidence            99999999997 7787877778777777777666666666655432   1222233 68999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCCCCCcccCCCccccCCCCCCCCCCcccchhcc
Q 006690          319 HIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEID  398 (635)
Q Consensus       319 ~~v~~r~Pf~kd~~lDYdyDSd~EWeeee~GEdl~~~e~d~e~eed~~~~ded~~~d~f~v~dg~l~d~e~~~~~~~~~d  398 (635)
                      .+|.+|+||++++.|||+||||+|||||++||+++++|+|++++.+   +|.++++|+|||||||||+|||++.+++++|
T Consensus       503 ~~VsarrPlAq~~llDYEVdSDeEWEEEepGESlS~sEddedd~~e---Ed~edEdDgffVPhgyLSedEgv~d~~~d~D  579 (811)
T KOG4364|consen  503 QVVSARRPLAQDPLLDYEVDSDEEWEEEEPGESLSDSEDDEDDSLE---EDCEDEDDGFFVPHGYLSEDEGVQDDRMDID  579 (811)
T ss_pred             cccccCCcccccccccccccCcccccccCCCccccccccccccccc---cccccccCCeecCCccccccccccccccCcc
Confidence            9999999999999999999999999999999999998876442211   3434668999999999999999998888776


Q ss_pred             CccccCCCCCcchhhhhhHHHHHHHH-hhhhhhhhHHHHHhhCCCeEecCCCCccccccccccccCCcchhhhhhhhccc
Q 006690          399 LSAEDTKSSPSYKQELESKESCALVR-QRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSI  477 (635)
Q Consensus       399 ~d~e~~~~s~~~~~~~e~ee~~~~~~-kqk~l~~l~~~al~~~qPliI~~l~~~~~p~~~a~d~~~t~k~e~~~Lq~l~~  477 (635)
                      +.. ....+-......++..||.+.. +++.+-.++.+++....+++|.+|.|...++..+.+.+++..++..|..+|..
T Consensus       580 ~~e-~dK~tek~k~r~~gp~f~dln~~k~~~~~A~~ah~a~d~ak~~~~~la~ep~~lpa~~dqtp~qpve~~~d~alm~  658 (811)
T KOG4364|consen  580 PSE-QDKNTEKSKQRQEGPEFCDLNQVKQKHLQALTAHAAKDTAKLIICNLAHEPVSLPAAKDQTPTQPVEQICDRALMV  658 (811)
T ss_pred             hhh-hhhhhhhhhhhhcCchHhhhcchhHHHHHHHHHHHhhhhHHHhhhhhccCCCCCchhhccCCCcchHHHHHHHHHH
Confidence            532 1123333455566777888765 67788889999999999999999988877787888888998899999999999


Q ss_pred             CCCCCCCcccccccccccccc-----ccccCCC-CCCC-CCCCCCChHHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHH
Q 006690          478 RPFPGDLHVEITVDIMDDENE-----KDCLSNG-KGST-TLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQL  550 (635)
Q Consensus       478 ~~~P~~p~~~~pv~~~~~~~~-----~~~~S~~-Kk~k-t~ipd~dLp~Lv~~I~gs~~Sk~~LVEilqk~fP~vSK~~I  550 (635)
                      +.||......++++....+.+     ..+.||. -.|+ ..+|+.+++.....|..|+.+++.+|+.++..||.++|..+
T Consensus       659 ql~pl~hgn~ns~~~ii~E~qE~~k~~~~~sn~t~~p~~~~~~~~~~~t~s~~~~~~S~~~~~~~~t~~~k~~~~Pk~rl  738 (811)
T KOG4364|consen  659 QLFPLSHGNENSINDIIDEDQEASKFSCSQSNPTSNPKAKIIPDSDLLTVSSTIQSCSQGINRVVETLQQKFPDVPKTRL  738 (811)
T ss_pred             HHhhhhcccccchHHHHHHHHHHHHHhhhccCCCCCCCCccccccccccchhhhhccccHHHHHHHhhhhhcCCCCcchh
Confidence            988877655555543322211     1112221 1222 34799999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhccCCCCceEecHhHHHHcCC--CCCCCCC-CccchhhhhccccCCCCCCCCCCCCCCCC
Q 006690          551 RNKVREISDFNFAENRWQVKREILIELGY--SPDKNGG-RAKGIATFFSKRCLPPDGKSLNPNEASPL  615 (635)
Q Consensus       551 KNTIkEIAtr~~~~krW~VK~EvL~~~gL--~~~~~~~-~~~~~~~~~s~~c~~~~~~~~~~~~~~~~  615 (635)
                      --.|+++..|  -.-+|+|+...+-.+|+  ||+++++ .|++|.+||+.|||||.....++.++.|.
T Consensus       739 cw~V~~l~~F--q~~~lqv~~qw~y~l~~~~sp~~d~~~~p~t~pt~~~p~~lp~s~~~~~~v~~~~~  804 (811)
T KOG4364|consen  739 CWKVRELSDF--QDSRLQVKKQWLYKLGLSPSPDKDGKRLPKTIPTFFSPRCLPPSTKPQPAVEDAAE  804 (811)
T ss_pred             HHHHHHHHhc--ccccccccceeeeeecCCCCCCCccccCCCCCCcccCcccCCCcCCCCcchhhHHH
Confidence            9999999999  99999999999999999  7888877 49999999999999998666655554443

>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A [] Back     alignment and domain information
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms] Back     alignment and domain information
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [] Back     alignment and domain information
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15236 CCDC66: Coiled-coil domain-containing protein 66 Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13904 DUF4207: Domain of unknown function (DUF4207) Back     alignment and domain information
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information
>PF15236 CCDC66: Coiled-coil domain-containing protein 66 Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query635
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-08
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 9e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 6e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 7e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 7e-05
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 1e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.2 bits (150), Expect = 4e-10
 Identities = 87/655 (13%), Positives = 180/655 (27%), Gaps = 187/655 (28%)

Query: 12  PSFINDL--MKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLE-KN 68
            +F+++            +LS+      +D ++         KDA      L   L  K 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEE----IDHIIM-------SKDAVSGTLRLFWTLLSKQ 75

Query: 69  KREVEK---EKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEE 125
           +  V+K   E  R++ +     + +E          +R      +   + R ++    + 
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTE----------QRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 126 ADKEQRHREKEEAEMKKKL-ALQKQASM----MERFLKRSKILTSCQNDE---------- 170
             K    R +   ++++ L  L+   ++    +    K    L  C + +          
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 171 -------SSPRAITSVL------LSKNSEQLPEAVTKLVDSTLSSNDEIN---------- 207
                  +SP  +  +L      +  N     +  + +     S   E+           
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 208 ----IDDIRRSHLSSWHRFGHFVR---SNRNQHWGIRRKPKTELFKELKLTNRGLGHDDD 260
               + +++  +  +W+ F    +   + R +         T     L   +  L  D+ 
Sbjct: 246 CLLVLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 261 -------LSMERSEDRCEAQTVDDK--SCITSSDSSSAITKCKRWKQLLQFDK------- 304
                  L     +   E  T + +  S I  S      T    WK  +  DK       
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKH-VNCDKLTTIIES 361

Query: 305 --------SHRPAFY--GIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEW---EEEEPGES 351
                    +R  F    ++P  +HI  P   L     +         W    + +    
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSL---I---------WFDVIKSDVMVV 407

Query: 352 LSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYK 411
           ++   K           ++   E    +P  YL                  + K     +
Sbjct: 408 VNKLHK-------YSLVEKQPKESTISIPSIYL------------------ELKVKLENE 442

Query: 412 QELESKESCALVRQRKYLSSLTEQALQKNQP--LIILNLMHEKVPLLMAEDLSGTSN--- 466
             L       +V       +     L           ++ H    +   E ++       
Sbjct: 443 YALHRS----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 467 ----MEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESD------ 516
               +EQK     +     G     I   +   +  K            I ++D      
Sbjct: 499 DFRFLEQKIRHDSTAWNASGS----ILNTLQQLKFYKP----------YICDNDPKYERL 544

Query: 517 LPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKR 571
           + AI+  +     N+      +  K+  + R  L  +   I    F E   QV+R
Sbjct: 545 VNAILDFLPKIEENL------ICSKYTDLLRIALMAEDEAI----FEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 635
d1sa0e_138 a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus 7e-05
d1sa0e_138 a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus 0.001
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 2e-04
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 0.001
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 0.002
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.002
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 Back     information, alignment and structure

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 19/92 (20%), Positives = 42/92 (45%)

Query: 48  EIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERR 107
           EI +K    EE+   ++ E  K   EK +   +  Q+  + ++       ++ A++ E  
Sbjct: 46  EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESN 105

Query: 108 REKEEADIRKQIRKQQEEADKEQRHREKEEAE 139
           +E  EA +   + + QE+    +  R+ +E +
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00