Citrus Sinensis ID: 006702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630----
Protein Sequence
MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHGHLHSSHCNHSNHGKSKTDSVPLGLGLGLGRSSARSVVAS
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHEEEEEEccccccEEccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHHcccccccEccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHcHHHHHEHHcccccccccccccccccccccccHHHHHHHccHHHccccHHHcccccEEEccccHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccEEEcccccccEEEcccHHcHccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MSSEIEVVEEVgqssqnhhnhdqsspsngvvvdeeslrndVYTAAAYGDLEKLQRLVecegcsvsepdglgYYALQWAALNNRTAAAQYIIEhggdvnaadhtgqtALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSkwnadpdvpdndgrsplhwAAYKGFADCIRLLLFLDAyrgrqdkegctplhwAAIRGNLEACTVLVQagkkedlmvtdntgltpaqlasdkNHRQVAFFLGNARRLLdkrcdgnspigkisklglaPALWCVILLMLVTYMHSVIMasnlpkltagFGLLAWSGVFLATGGLVLFYrcsrkdpgyirmnvhdpqnmkddepllkiemnnpallagnwSQLCATckivrplrakhcstcdrcveqfdhhcpwvsncigkknkwDFFLFLVLEVSAMLVTGAVTVIRVftdpvapssfgAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRgaggrfrnpydhgckrncsdflingfnedvecvedsagtegiGMMHmsrnsnlqngdghihhangNGHVAINVnsnntnshhghlhsshcnhsnhgksktdsvplglglglgrssarsvvas
Flexible Loop (DISEMBL)
MSSEIEVVEEVgqssqnhhnhdqsspsngVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLtpaqlasdknhRQVAFFLGNARRLLDKRCDGNSPigkisklglaPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQasqisrnittnemANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHGHLHSSHCNHSNHGKSKTDSVPLGlglglgrssarsvvas
Low Complexity Region (SEG)
MSSEIEVVEEVGqssqnhhnhdqsspsnGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAInvnsnntnshhghlhsshcnhsnhGKSKTDSVPlglglglgRSSARSVVAS
Disordered region (IsUnstruct)
************************************LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP**DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA*DKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNV***********LLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVED***************************************************************************************
Disordered Region (DISOPRED)
MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANAL**************PYDHGCKRNCSDFLINGFNEDVECVEDSAGTE****************************************************************LGLGLGLGR*********
Disordered Region (DISEMBL)
******************************VVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTN***********************VPLGLGLGLG**********
Disordered Region (DISPRO)
**SEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNGDGHI**************************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHGHLHSSHCNHSNHGKSKTDSVPLGLGLGLGRSSARSVVAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	634	2.2.26 [Sep-21-2011]
Q52T38	620	S-acyltransferase TIP1 OS	yes	no	0.973	0.995	0.773	0.0
Q3EC11	536	Probable S-acyltransferas	no	no	0.839	0.992	0.502	1e-157
Q8IUH5	632	Palmitoyltransferase ZDHH	yes	no	0.802	0.805	0.285	1e-50
Q80TN5	632	Palmitoyltransferase ZDHH	yes	no	0.802	0.805	0.285	3e-50
Q7Z8U2	737	Palmitoyltransferase akr1	yes	no	0.708	0.609	0.285	8e-43
Q4X251	738	Palmitoyltransferase akr1	yes	no	0.708	0.608	0.281	1e-42
Q4P6L3	844	Palmitoyltransferase AKR1	N/A	no	0.858	0.644	0.259	8e-42
P0CS66	776	Palmitoyltransferase AKR1	yes	no	0.854	0.698	0.264	8e-41
P0CS67	776	Palmitoyltransferase AKR1	N/A	no	0.854	0.698	0.264	8e-41
Q4I8B6	702	Palmitoyltransferase AKR1	yes	no	0.604	0.545	0.295	9e-41

>sp|Q52T38|ZDH22_ARATH S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/635 (77%), Positives = 554/635 (87%), Gaps = 18/635 (2%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECE 60
           MSSEIEVVEE+    Q++   +  S S G+  +EESL+NDVYTAAAYGDLEKL RLVECE
Sbjct: 1   MSSEIEVVEEI----QSNPKENGESSSKGI--EEESLKNDVYTAAAYGDLEKLHRLVECE 54

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
           G SVSEPD LGYYALQW+ALNNR A AQY+IEHGGDVNA DHTGQTALHWSAVRGAIQVA
Sbjct: 55  GSSVSEPDALGYYALQWSALNNRVAVAQYLIEHGGDVNATDHTGQTALHWSAVRGAIQVA 114

Query: 121 ELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 180
           ELLL+EGARV+A DMYGYQ THVAAQYGQTAFL H+VSKWNADPDVPDNDGRSPLHWAAY
Sbjct: 115 ELLLQEGARVDATDMYGYQATHVAAQYGQTAFLCHVVSKWNADPDVPDNDGRSPLHWAAY 174

Query: 181 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
           KGFAD IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM+TD TGL
Sbjct: 175 KGFADSIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMITDKTGL 234

Query: 241 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMH 300
           TPAQLA++KNHRQV+FFLGNAR LL+KRCDG+SP+G++SKLGLAP LW +ILL+L+ Y +
Sbjct: 235 TPAQLAAEKNHRQVSFFLGNARSLLEKRCDGSSPLGRLSKLGLAPVLWIMILLLLLVYTN 294

Query: 301 SVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPL 360
           SV++ASNLPKLT G G LAW G  LAT GL LFYRCSRKDPGYIRMN+HDPQ MKDDEPL
Sbjct: 295 SVVLASNLPKLTTGIGALAWLGFILATAGLFLFYRCSRKDPGYIRMNIHDPQTMKDDEPL 354

Query: 361 LKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 420
           LKIE+NNPALLAGNW+QLCATCKI+RPLRAKHCSTCDRCVEQFDHHCPWVSNC+GKKNKW
Sbjct: 355 LKIELNNPALLAGNWTQLCATCKIIRPLRAKHCSTCDRCVEQFDHHCPWVSNCVGKKNKW 414

Query: 421 DFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFF 480
           +FFLFL+LEV AML+TG VT+ RV +DP APSSFGAWMS+ +++H+GALSFL+ +F LFF
Sbjct: 415 EFFLFLLLEVLAMLITGGVTLARVLSDPSAPSSFGAWMSHVASNHVGALSFLLVEFCLFF 474

Query: 481 GVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNE 540
            VAVLT +QASQISRNITTNEMANALRY+YLRG GGRFRNPYD GC+RNCSDFL+ G+NE
Sbjct: 475 SVAVLTVIQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDLGCRRNCSDFLVKGYNE 534

Query: 541 DVECVEDSAG--TEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHGHLH 598
           D+EC E+ A    EGI MM M RN NLQ         NGNGHVAI+VN  + NS   H+H
Sbjct: 535 DIECHEEDATQRPEGISMMQMQRNPNLQ---------NGNGHVAIDVNPTH-NSQSAHVH 584

Query: 599 SSHCNHSNHGKSKTDSVPLGLGLGLGRSSARSVVA 633
           S++C+HS++ KSK+D+VPLGLGLGL R+  R VV+
Sbjct: 585 SANCSHSHNSKSKSDNVPLGLGLGLSRNPTRPVVS 619

Palmitoyltransferase involved in cell growth regulation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q3EC11|ZDHC2_ARATH Probable S-acyltransferase At2g14255 OS=Arabidopsis thaliana GN=At2g14255 PE=2 SV=2

 Score =  556 bits (1433), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/547 (50%), Positives = 358/547 (65%), Gaps = 15/547 (2%)

Query: 2   SSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEG 61
           SSEIEVV     S Q        SP+      E     DV++A+AYGDL +L+  VE  G
Sbjct: 3   SSEIEVVPLDSNSHQ--------SPT------ESPTITDVFSASAYGDLHQLKHFVEHNG 48

Query: 62  CSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAE 121
            SVS PD  G+YALQWAALNN    AQYII+HGGDVN+AD+  QT LHW+AV+G+I VA+
Sbjct: 49  SSVSLPDDNGFYALQWAALNNSLHVAQYIIQHGGDVNSADNIQQTPLHWAAVKGSIDVAD 108

Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           LLL+ GAR+ A D+ G++  HVA+QYGQTAF+ HI+  + AD +  D +GRSPLHWAAY 
Sbjct: 109 LLLQHGARIEAVDVNGFRAVHVASQYGQTAFVNHIIVDYAADYNALDIEGRSPLHWAAYN 168

Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           GF + +RLLLF DA + RQD  GCTPLHWA I+ N+EACT+LV AG KE+L++ DNTG T
Sbjct: 169 GFTETVRLLLFRDACQNRQDNTGCTPLHWAVIKENVEACTLLVHAGTKEELILKDNTGST 228

Query: 242 PAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHS 301
           P +LASDK HRQ+A FL  A R            GK+ +   AP L+ +I++++V ++ S
Sbjct: 229 PLKLASDKGHRQLALFLSKAMRTRKNSFVDKIFCGKLGETSYAPMLFSLIVILMVLFITS 288

Query: 302 VIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLL 361
           ++ ASNLPK+TA  GL A  G+      L+ FYR SRKDPGY++           ++PL+
Sbjct: 289 IVSASNLPKITAMVGLWACFGLSCGVYALITFYRVSRKDPGYVKRTGEANSQHTANDPLI 348

Query: 362 KIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWD 421
            I   NP+   GNWSQLC TCKI+RP+R+KHC TC RCVEQFDHHCPW+SNC+GKKNK  
Sbjct: 349 DINFKNPS-WKGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKKNKRY 407

Query: 422 FFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFG 481
           F +F+++      V G   V R++          +W+ +    H  A  FL  D  +F  
Sbjct: 408 FLVFVIMGALTSFVGGTTAVQRLWRGIPQVHHGESWIKHIVIEHPDAAVFLFFDLLIFIA 467

Query: 482 VAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNED 541
              LT  Q+  I+RNITTNE+ NA R++YLRG  GRF NPY+HG +RNC+DFL++G+  D
Sbjct: 468 TMTLTISQSYMIARNITTNELWNAKRFSYLRGPDGRFYNPYNHGLRRNCTDFLVHGYTRD 527

Query: 542 VECVEDS 548
            E V  S
Sbjct: 528 DEVVPSS 534

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUH5|ZDH17_HUMAN Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZDHHC17 PE=1 SV=2

 Score =  201 bits (511), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 167/585 (28%), Positives = 261/585 (44%), Gaps = 76/585 (12%)

Query: 9   EEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPD 68
           EE+    Q+H+NH    P       ++    D+  A  YG  E+ + LVE  G  V +PD
Sbjct: 31  EEI--KPQSHYNHGYGEPLGRKTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQPD 87

Query: 69  GLGYYALQWAALNNRTAAAQYIIEHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREG 127
                 L WAA+NNR    +Y I  G  V+        T LHW+  +G + +   L++ G
Sbjct: 88  KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 147

Query: 128 ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA-DC 186
           A  +  D  G    H+AAQ+G T+ + ++++K   D D+ D +G +PL WAAY+  + D 
Sbjct: 148 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDP 206

Query: 187 IRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQL 245
            RLLL  +      DK    T LHWA + GN    ++L++AG   D    +  G +   L
Sbjct: 207 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD--AQNIKGESALDL 264

Query: 246 ASDK------NHRQVA---------FFLG--NARRLLDKRCDGNSP------IGKISKLG 282
           A  +      NH Q A          FL    A +   ++    +P      +G I+ L 
Sbjct: 265 AKQRKNVWMINHLQEARQAKGYDNPSFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLN 324

Query: 283 LAPAL---------WCVILLMLVTY----MHS-----VIMASNLPKLTAGFGLLAWSGV- 323
           +   L         W  +  +  ++    MHS     + +A+        F    W+ + 
Sbjct: 325 IDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWF-FWFWNDLN 383

Query: 324 -------FLATGGLVLFY---RCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAG 373
                  FLA   + LFY   +  + DPG I+         ++ +    +E+     L  
Sbjct: 384 FLFIHLPFLA-NSVALFYNFGKSWKSDPGIIKAT-------EEQKKKTIVELAETGSL-- 433

Query: 374 NWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDF--FLFLVLEVS 431
           + S  C+TC I +P+R+KHC  C+RC+ +FDHHCPWV NC+G  N   F  +LF +L + 
Sbjct: 434 DLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMI 493

Query: 432 AMLVTGAVTVIRVFTDPV-APSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQA 490
             ++ G ++   +  +       F  +++  +T         +     F  VAVL   Q 
Sbjct: 494 CWMIYGCISYWGLHCETTYTKDGFWTYITQIATCSPWMFWMFLNSVFHFMWVAVLLMCQM 553

Query: 491 SQIS-RNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFL 534
            QIS   ITTNE  NA RY + +       +P++HGC RN  DF 
Sbjct: 554 YQISCLGITTNERMNARRYKHFKVTTTSIESPFNHGCVRNIIDFF 598

Palmitoyltransferase specific for a subset of neuronal proteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HD. May be involved in the sorting or targeting of critical proteins involved in the initiating events of endocytosis at the plasma membrane. Has transforming activity. Mediates Mg(2+) transport.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q80TN5|ZDH17_MOUSE Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zdhhc17 PE=1 SV=2

 Score =  200 bits (508), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 167/585 (28%), Positives = 261/585 (44%), Gaps = 76/585 (12%)

Query: 9   EEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPD 68
           EE+    Q+H+NH    P       ++    D+  A  YG  E+ + LVE  G  V +PD
Sbjct: 31  EEI--KPQSHYNHGYGEPLGRKTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPD 87

Query: 69  GLGYYALQWAALNNRTAAAQYIIEHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREG 127
                 L WAA+NNR    +Y I  G  V+        T LHW+  +G + +   L++ G
Sbjct: 88  KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 147

Query: 128 ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA-DC 186
           A  +  D  G    H+AAQ+G T+ + ++++K   D D+ D +G +PL WAAY+  + D 
Sbjct: 148 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDP 206

Query: 187 IRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQL 245
            RLLL  +      DK    T LHWA + GN    ++L++AG   D    +  G +   L
Sbjct: 207 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGGNVD--AQNVKGESALDL 264

Query: 246 ASDK------NHRQVA---------FFLG--NARRLLDKRCDGNSP------IGKISKLG 282
           A  +      NH Q A          FL    A +   ++    +P      +G I+ L 
Sbjct: 265 AKQRKNVWMINHLQEARQAKGYDNPSFLRKLKADKEFRQKVMLGTPFLVIWLVGFIADLD 324

Query: 283 LAPAL---------WCVILLMLVTY----MHS-----VIMASNLPKLTAGFGLLAWSGV- 323
           +   L         W  +  +  ++    MHS     + +A+        F    W+ + 
Sbjct: 325 IDSWLIKGLMYGGVWATVQFLSKSFFDHSMHSALPLGIYLATKFWMYVTWF-FWFWNDLN 383

Query: 324 -------FLATGGLVLFY---RCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAG 373
                  FLA   + LFY   +  + DPG I+         ++ +    +E+     L  
Sbjct: 384 FLFIHLPFLA-NSVALFYNFGKSWKSDPGIIKAT-------EEQKKKTIVELAETGSL-- 433

Query: 374 NWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDF--FLFLVLEVS 431
           + S  C+TC I +P+R+KHC  C+RC+ +FDHHCPWV NC+G  N   F  +LF +L + 
Sbjct: 434 DLSIFCSTCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMI 493

Query: 432 AMLVTGAVTVIRVFTDPV-APSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQA 490
             ++ G V+   +  +       F  +++  +T         +     F  VAVL   Q 
Sbjct: 494 CWMIYGCVSYWGLHCETTYTKDGFWTYITQIATCSPWMFWMFLNSVFHFLWVAVLLMCQL 553

Query: 491 SQIS-RNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFL 534
            QI+   ITTNE  NA RY + +       +P++HGC RN  DF 
Sbjct: 554 YQITCLGITTNERMNARRYKHFKVTTTSIESPFNHGCVRNIIDFF 598

Palmitoyltransferase specific for a subset of neuronal proteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HD. May be involved in the sorting or targeting of critical proteins involved in the initiating events of endocytosis at the plasma membrane. Has transforming activity. Mediates Mg(2+) transport.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q7Z8U2|AKR1_ASPOR Palmitoyltransferase akr1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=akr1 PE=3 SV=2

 Score =  175 bits (444), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 160/561 (28%), Positives = 234/561 (41%), Gaps = 112/561 (19%)

Query: 25  SPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRT 84
           +P  G       L  D+   A  G++  +QRL + +  S +  D  G   L WAA+NN+ 
Sbjct: 51  NPERGAARGSIPLGEDIMQIARIGEVPAMQRLFDEKKFSANHKDEEGITPLHWAAINNQY 110

Query: 85  AAAQYIIEHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHV 143
           A  +++++ G DVNA    +  T   W+A R    +  LLL+ GA     D+ GY   H+
Sbjct: 111 AMCKFLLDSGADVNAKGGESVATPAMWAAQRCHYYIVHLLLQRGADPLLTDVQGYNILHL 170

Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
           A   G  AFL  ++       DV D  G + L WAAYKG+   + L L   A+    D+ 
Sbjct: 171 ATIDGN-AFLLVLLLHQEIPVDVVDQQGHTGLMWAAYKGYPALVDLFLRWGAHANAVDEG 229

Query: 204 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
           G TPLHWA ++G+L     L++ G   D       G TPA +A + N  +V +      R
Sbjct: 230 GLTPLHWALVKGSLPCVLKLIEYGA--DKFAKTRDGKTPAVVAGEMNTTRVWY------R 281

Query: 264 LLDKR---CDGNSPIGKISKLGLA----------------------PALWCV-------- 290
            LD+     DGN+   K+S  GLA                       A+W +        
Sbjct: 282 ALDEYGYDLDGNA---KVSSSGLASWVRNKSLMSKFFFLWPFAIVFAAVWILSNMVVYAA 338

Query: 291 ILLMLVTYMHSVIMA--------------SNLPKLTAGF-GLLAWSG---VF-------- 324
           I +MLVT      +A                 P L+  F G L W G   VF        
Sbjct: 339 IPMMLVTVFGLQWVAQKAASQGPSEYRILQKTPYLSGVFAGSLFWVGFRYVFYVLPVTYS 398

Query: 325 ---LATGGLVLFYRCSR--------KDPGYI-RMNVHDPQNMKDDEPLLKIEMNNPALLA 372
              +  G   +F+  +         +DPG++ ++   + Q     E   + + +      
Sbjct: 399 TSPILNGLFAIFFSLTTYFYIYSMVEDPGFVPKLGSRNQQRAVITELFEQWKFDE----- 453

Query: 373 GNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLV-LEVS 431
                 C +C + RPLR+KHC  C RCV + DHHCPW+ NC+G  N   F L++  LEV 
Sbjct: 454 ---ENFCVSCMVRRPLRSKHCKRCARCVAKHDHHCPWIDNCVGANNLRHFVLYITCLEVG 510

Query: 432 AML-VTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIAD-FSLFFG-------- 481
            +L V      I     P  P          +  +     F++ D F+L           
Sbjct: 511 IVLFVQLTFNYINSLPAPAQPQ--------CNIINETLCDFVLRDTFTLVLDLWVCIQLV 562

Query: 482 -VAVLTAVQASQISRNITTNE 501
            + +L AVQ  QISRN TT E
Sbjct: 563 WITMLVAVQMIQISRNQTTYE 583

Palmitoyltransferase specific for casein kinase 1.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q4X251|AKR1_ASPFU Palmitoyltransferase akr1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=akr1 PE=3 SV=2

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 158/562 (28%), Positives = 236/562 (41%), Gaps = 113/562 (20%)

Query: 22  DQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALN 81
           D+S P   + + E     D+   A  G++  +QRL + +  + +  D  G   L WAA+N
Sbjct: 53  DRSPPKGSIPLGE-----DIMQIARIGEIGPMQRLFDEKKFTANYQDEEGITPLHWAAIN 107

Query: 82  NRTAAAQYIIEHGGDVNA--ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQ 139
           N+ A  ++++++G DVNA   D     A+ W+A R    +  LLL+ GA     D+ GY 
Sbjct: 108 NQYAMCKFLLDNGADVNAKGGDSVATPAM-WAAQRCHYYIVHLLLQHGADPLLTDVQGYN 166

Query: 140 TTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGR 199
             H+A   G  AFL  ++       DV D  G + L WAAYKG+  C+ L L   A    
Sbjct: 167 ILHLATIDGN-AFLLVLLLHQEIPVDVIDQQGHTGLMWAAYKGYPACVDLFLRWGANVNA 225

Query: 200 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG 259
            D  G TPLHWA ++G+L     L++ G   D       G +PA +A + N  +V +   
Sbjct: 226 VDDGGLTPLHWALVKGSLPCVQKLIEYGA--DRFAKTRDGKSPATVAGEMNTTRVWY--- 280

Query: 260 NARRLLDK---RCDGNS---PIGKISKLGLAPA------LWCVILLMLVTYM--HSVIMA 305
              R LD+     DGN+   P+G  S L           LW  +++    Y+  H VI A
Sbjct: 281 ---RALDECGYDVDGNTKVLPMGLTSWLRNKSVMSKFFFLWPFLMVYAAVYILSHMVIYA 337

Query: 306 SNLPKLTAGFGL-------------------------------LAWSGVFLATGGLVLFY 334
           +    L A FGL                               L W GV      L   Y
Sbjct: 338 AIPIMLVATFGLQWVAQKAASQAPSEYRVLQKTPYLSGVFAGSLFWVGVTYIFSVLPATY 397

Query: 335 RCS----------------------RKDPGYI-RMNVHDPQNMKDDEPLLKIEMNNPALL 371
             S                       +DPG++ +    + Q +  +E   + + +     
Sbjct: 398 STSPILNILFAVFYCLTTYFYIYSMTEDPGFVPKTGSRNQQKVVINELFEQWKFDE---- 453

Query: 372 AGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLV-LEV 430
                  C  C + +PLR+KHC  C RCV + DHHCPW+ NC+G  N   F L+++ LE+
Sbjct: 454 ----ENFCVFCMVRKPLRSKHCKRCSRCVAKHDHHCPWIDNCVGANNLRHFVLYIICLEI 509

Query: 431 SAML-VTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIAD-FSLFFG------- 481
             +L +      I +   PV  +         +  +     F++ D F+L          
Sbjct: 510 GIILFLQLTYRYINILPAPVEHA--------CNIINEELCGFVLRDPFTLVLDLWIAIQL 561

Query: 482 --VAVLTAVQASQISRNITTNE 501
             V +L AVQ  QISRN TT E
Sbjct: 562 VWVTMLCAVQLVQISRNQTTYE 583

Palmitoyltransferase specific for casein kinase 1.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q4P6L3|AKR1_USTMA Palmitoyltransferase AKR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=AKR1 PE=3 SV=1

 Score =  172 bits (435), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 170/655 (25%), Positives = 273/655 (41%), Gaps = 111/655 (16%)

Query: 25  SPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRT 84
           +PS      ++ +   +++AA  GDL  + RLV+    +V + D      L WAA+N + 
Sbjct: 56  APSRANTPGQDQMPLTIHSAAQRGDLPAIMRLVDSGRATVHDRDDDNITPLHWAAINAQL 115

Query: 85  AAAQYIIEHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHV 143
           A  +Y+++HG  V+A       + L W+A  G + V ELL   GA     D  G+   H+
Sbjct: 116 ATCRYLLDHGAQVDALGGDLIASPLQWAARNGHVYVLELLCSRGADPTITDSQGFNALHL 175

Query: 144 AAQYGQTAFLYHIVSKWNADP----DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGR 199
                    L  ++ + + D     D  D+ G + L WAAY+G A  + +LL   A   +
Sbjct: 176 TVHSSAVMPLVFMLQQPSLDSPEGLDSTDSQGHTALMWAAYQGDAISVDILLKHGADVHK 235

Query: 200 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP----AQLASDKNHRQVA 255
           +D  G T +HWA ++GN     +L  A  K DL+  +++G TP     +L S   +R+  
Sbjct: 236 RDGAGLTAMHWAVVKGNRLCIRLLADA--KADLLAKEDSGKTPRDMAIELKSIGAYRKAL 293

Query: 256 FFLG---NARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTY-------------- 298
             +G   + RR   +R  G S   + ++L      +  +  +  T+              
Sbjct: 294 ADIGLEEDGRR--KQRTFGAS-TDRTARLATMVVPFVALGFIFATFAALPWYTAAPFAAA 350

Query: 299 ----MHSVIMASNLPKLTAGF------------GLLAWSG------------------VF 324
               MH ++    L      F            G +AW G                  +F
Sbjct: 351 ELFGMHHIVTRVILDPHEHDFLQRSNYFLAIVAGSIAWVGWEWVHKLASATPGYASNNLF 410

Query: 325 LATGGLVL---FYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCAT 381
            A   +V     +R +   PGY  +    P  +   E + ++          N    C +
Sbjct: 411 FALSLIVCSWNLFRAASISPGYAPLV---PSALHRREIVTQLAQQGRL----NGQTYCVS 463

Query: 382 CKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTV 441
           C   +P+R+KHC  C RCV + DHHCPWV+NCIG  N   F LF+   V  +L    +TV
Sbjct: 464 CMARKPMRSKHCKLCKRCVARHDHHCPWVANCIGVGNHRQFLLFVGALVVGVLQFLYLTV 523

Query: 442 IRVFT-----DPVAPSSFG------AWMSYASTHHIGALSF-LIADFSLFFGVAVLTAVQ 489
           +         DP+  SS+       A++  A+T     L   L A   L + V +L A Q
Sbjct: 524 VYYSINAPPYDPLPDSSYETCHLPFAFLCTATTFDAFLLGVALWAALQLTWTVILLVA-Q 582

Query: 490 ASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSA 549
           A QI+R +TT E++N  R+ ++ G GG+             ++F+             SA
Sbjct: 583 AWQITRQMTTLEVSNLGRFGFMGGKGGQ--------SYAGQTNFIAQHSGRGQPSGSLSA 634

Query: 550 GTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINV---NSNNTNSHHGHLHSSH 601
            T+ +  +H       Q G+      N N  + +N+    S +  S H H H SH
Sbjct: 635 ATDRLQGIHK------QFGE------NENAEIDVNLGADESADATSTHAHAHGSH 677

Palmitoyltransferase specific for casein kinase 1.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS66|AKR1_CRYNJ Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=AKR1 PE=3 SV=1

 Score =  169 bits (427), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 177/670 (26%), Positives = 269/670 (40%), Gaps = 128/670 (19%)

Query: 40  DVYTAAAYGDLEKLQRLV-ECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           D++  A  GD   +  ++ E    ++S  D      L WAA+N      + +I+ G D++
Sbjct: 72  DIHALAQRGDTAAIAAMLQENPSLNLSARDAQDVTPLHWAAINAHMGTCRLLIDSGADID 131

Query: 99  A-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
           A       T L W+A  G + V  LL+  GA  N  D  G+ T H+         L +++
Sbjct: 132 AIGGELKATPLQWAARNGHLYVVHLLISRGADPNIHDSQGFNTLHLITHSSAVMPLLYML 191

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
            +  A  D  D DG + L WAAY+G A  + LL+   A     D  G TPLHWAA++GN 
Sbjct: 192 HQPVAI-DEKDTDGHTALMWAAYQGDALSVDLLIRHGASVNSTDNAGMTPLHWAAVKGNK 250

Query: 218 EACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFF---LGNARRLLDK-RCDGN- 272
            +   LV+AG   D    +  G TP  +A +   R +  F   L  A   +D  + +G  
Sbjct: 251 VSIMHLVEAGASLD--AKEEAGKTPRDMAEEL--RGLVPFQKGLEEAGWSIDGVKMEGKL 306

Query: 273 SPIGKISKLGLAP--ALWCV--------------------------ILLMLV-------- 296
            P   I  + L P   LW +                          ++L+L+        
Sbjct: 307 GPRNTILAIFLLPIAVLWLIFSTFKWLPVYVGVPFAIAEFMGMQYTVVLVLLGHIKAQDK 366

Query: 297 ----TYMHSVIMA----------SNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPG 342
                Y  S+I A          S     T G+       + +  G    F+     DPG
Sbjct: 367 VSTSNYFASIITASLIWVGYCWISRFAVNTPGYAFSNLGFIIMFVGCCWTFWTAIVTDPG 426

Query: 343 YIRMNVHDPQNMKDDEPLLKIEMNNPALLAG--NWSQLCATCKIVRPLRAKHCSTCDRCV 400
           ++      P+  +D E  +K E+    + AG  N +  C  C   +PLR+KHC TC+RCV
Sbjct: 427 FV------PKGQQDAE--IK-EVLEDLVDAGRLNGTNFCIVCMARKPLRSKHCRTCNRCV 477

Query: 401 EQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSY 460
            +FDHHCPW+ NC+G KN   F LF++  +  +++   +T+  +  +  AP         
Sbjct: 478 ARFDHHCPWIWNCVGAKNHRSFLLFVLFLIGGIILFIRLTIAYIQQN--APEYIPTPNPG 535

Query: 461 ASTHHIGALSFLIADFSLFF------------GVAVLTAVQASQISRNITTNEMANALRY 508
            +T  I        DF  F               +VL      Q+SR +TT E++N  RY
Sbjct: 536 LTTCDISTTLCQAGDFDPFLLCMALWSTLQLTWTSVLAISHLWQVSRQMTTFEVSNLGRY 595

Query: 509 NYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNG 568
            ++ G GG+          R+ S  ++          + +A   GIGM          +G
Sbjct: 596 GFMGGRGGQ--------SLRDQSGAMLK---------QAAAVGAGIGM----------SG 628

Query: 569 DGHIHHANGNGHVAINVNSNNTNSHHGHLHSSHCNHSNHGKS-------------KTDSV 615
            G    A   G  A    +       GH+H   C H +H +              KT + 
Sbjct: 629 AGE-EAAGPPGAEAGPEGNALLPPPGGHVHGPQCRHGDHARGHSHGVLHICGALWKTLTG 687

Query: 616 PLGLGLGLGR 625
           PL   LGL R
Sbjct: 688 PLMTILGLDR 697

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|P0CS67|AKR1_CRYNB Palmitoyltransferase AKR1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=AKR1 PE=3 SV=1

 Score =  169 bits (427), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 177/670 (26%), Positives = 269/670 (40%), Gaps = 128/670 (19%)

Query: 40  DVYTAAAYGDLEKLQRLV-ECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           D++  A  GD   +  ++ E    ++S  D      L WAA+N      + +I+ G D++
Sbjct: 72  DIHALAQRGDTAAIAAMLQENPSLNLSARDAQDVTPLHWAAINAHMGTCRLLIDSGADID 131

Query: 99  A-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
           A       T L W+A  G + V  LL+  GA  N  D  G+ T H+         L +++
Sbjct: 132 AIGGELKATPLQWAARNGHLYVVHLLISRGADPNIHDSQGFNTLHLITHSSAVMPLLYML 191

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
            +  A  D  D DG + L WAAY+G A  + LL+   A     D  G TPLHWAA++GN 
Sbjct: 192 HQPVAI-DEKDTDGHTALMWAAYQGDALSVDLLIRHGASVNSTDNAGMTPLHWAAVKGNK 250

Query: 218 EACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFF---LGNARRLLDK-RCDGN- 272
            +   LV+AG   D    +  G TP  +A +   R +  F   L  A   +D  + +G  
Sbjct: 251 VSIMHLVEAGASLD--AKEEAGKTPRDMAEEL--RGLVPFQKGLEEAGWSIDGVKMEGKL 306

Query: 273 SPIGKISKLGLAP--ALWCV--------------------------ILLMLV-------- 296
            P   I  + L P   LW +                          ++L+L+        
Sbjct: 307 GPRNTILAIFLLPIAVLWLIFSTFKWLPVYVGVPFAIAEFMGMQYTVVLVLLGHIKAQDK 366

Query: 297 ----TYMHSVIMA----------SNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPG 342
                Y  S+I A          S     T G+       + +  G    F+     DPG
Sbjct: 367 VSTSNYFASIITASLIWVGYCWISRFAVNTPGYAFSNLGFIIMFVGCCWTFWTAIVTDPG 426

Query: 343 YIRMNVHDPQNMKDDEPLLKIEMNNPALLAG--NWSQLCATCKIVRPLRAKHCSTCDRCV 400
           ++      P+  +D E  +K E+    + AG  N +  C  C   +PLR+KHC TC+RCV
Sbjct: 427 FV------PKGQQDAE--IK-EVLEDLVDAGRLNGTNFCIVCMARKPLRSKHCRTCNRCV 477

Query: 401 EQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSY 460
            +FDHHCPW+ NC+G KN   F LF++  +  +++   +T+  +  +  AP         
Sbjct: 478 ARFDHHCPWIWNCVGAKNHRSFLLFVLFLIGGIILFIRLTIAYIQQN--APEYIPTPNPG 535

Query: 461 ASTHHIGALSFLIADFSLFF------------GVAVLTAVQASQISRNITTNEMANALRY 508
            +T  I        DF  F               +VL      Q+SR +TT E++N  RY
Sbjct: 536 LTTCDISTTLCQAGDFDPFLLCMALWSTLQLTWTSVLAISHLWQVSRQMTTFEVSNLGRY 595

Query: 509 NYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNG 568
            ++ G GG+          R+ S  ++          + +A   GIGM          +G
Sbjct: 596 GFMGGRGGQ--------SLRDQSGAMLK---------QAAAVGAGIGM----------SG 628

Query: 569 DGHIHHANGNGHVAINVNSNNTNSHHGHLHSSHCNHSNHGKS-------------KTDSV 615
            G    A   G  A    +       GH+H   C H +H +              KT + 
Sbjct: 629 AGE-EAAGPPGAEAGPEGNALLPPPGGHVHGPQCRHGDHARGHSHGVLHICGALWKTLTG 687

Query: 616 PLGLGLGLGR 625
           PL   LGL R
Sbjct: 688 PLMTILGLDR 697

Palmitoyltransferase specific for casein kinase 1.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q4I8B6|AKR1_GIBZE Palmitoyltransferase AKR1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=AKR1 PE=3 SV=1

 Score =  169 bits (427), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 200/467 (42%), Gaps = 84/467 (17%)

Query: 33  DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIE 92
           D ++  +D+   A  GD+  +++L E      +  D  G   L WAA+NN+ A  +++IE
Sbjct: 24  DAQTQEDDIMQVARVGDVPAMEKLFESGEYDATYHDDEGITPLHWAAINNQYAMCKFLIE 83

Query: 93  HGGDVN-AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA 151
           HG ++N     +  T L W+A R       LLL+ GA     D  GY T H++   G   
Sbjct: 84  HGAEINRKGGESIATPLQWAAQRCHYYTVNLLLQHGADPLVTDAQGYNTLHISTFNGNVL 143

Query: 152 FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWA 211
            L  ++ +     DV D  G + L WAAYKGF  C+ L L   A     D++G T LHWA
Sbjct: 144 LLVLLLHQ-GIPVDVIDTFGHTALMWAAYKGFPQCVDLFLRWGASVHATDEQGFTALHWA 202

Query: 212 AIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN------------------HRQ 253
            ++G+      L++ G   D      TG TP+  A + N                  H  
Sbjct: 203 LVKGSPGCILKLIEYGA--DRFAKTQTGKTPSVTAKELNTEVAWHRALTECGFDEDGHPA 260

Query: 254 VAFFLGNARRLLDKR--------------------CDGNSPIGKISKLGLAPALWCV--I 291
           V  + G +  L DKR                       ++P+     LG+A A++ +  +
Sbjct: 261 VPPWPGASYFLKDKRSFVTRFLFFWPFVLVWAMLVAMSSAPVYIGVPLGIA-AVYAIQWV 319

Query: 292 LLMLVTYMHSVIM-ASNLPKLTAGF-GLLAWSGV-FLAT--------------------- 327
              ++ Y  S +      P LT  F   L W+GV +L T                     
Sbjct: 320 AQQVLEYAPSDMRHFHKTPWLTGIFAATLFWTGVNWLTTVLFATTLGAPEGKGHGILNFL 379

Query: 328 -----GGLVLFYRCS-RKDPGYI-RMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCA 380
                G  V FY  S R DPG++ +MN    Q    DE L + + +         +  C 
Sbjct: 380 FALFFGFTVYFYIASMRYDPGFVPKMNGIAEQKAVIDELLAQWKYDE--------TNFCV 431

Query: 381 TCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLV 427
           TC I  PLR+KHC  C RCV + DHHCPWV NC+G  N   FF +L+
Sbjct: 432 TCMIQTPLRSKHCRRCQRCVAKHDHHCPWVYNCVGINNHRHFFFYLI 478

Palmitoyltransferase specific for casein kinase 1.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	634
356562922	633	PREDICTED: S-acyltransferase TIP1-like [	0.976	0.977	0.811	0.0
225446195	635	PREDICTED: S-acyltransferase TIP1 [Vitis	0.992	0.990	0.810	0.0
449443019	632	PREDICTED: S-acyltransferase TIP1-like [	0.996	1.0	0.829	0.0
357478389	642	S-acyltransferase TIP1 [Medicago truncat	0.992	0.979	0.794	0.0
224120466	608	predicted protein [Populus trichocarpa]	0.940	0.980	0.785	0.0
79517230	620	S-acyltransferase TIP1 [Arabidopsis thal	0.973	0.995	0.773	0.0
312282023	619	unnamed protein product [Thellungiella h	0.900	0.922	0.797	0.0
357123214	638	PREDICTED: S-acyltransferase TIP1-like [	0.981	0.974	0.676	0.0
413954646	639	hypothetical protein ZEAMMB73_866253 [Ze	0.982	0.974	0.698	0.0
242093712	640	hypothetical protein SORBIDRAFT_10g02531	0.981	0.971	0.699	0.0

>gi|356562922|ref|XP_003549717.1| PREDICTED: S-acyltransferase TIP1-like [Glycine max]

 Score = 1053 bits (2724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/647 (81%), Positives = 570/647 (88%), Gaps = 28/647 (4%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECE 60
           MSSEIEVVEEV        + D+ S +      EESLRNDVYTAAAYGDLE+LQRLVE E
Sbjct: 1   MSSEIEVVEEV-------QSRDEQSGA------EESLRNDVYTAAAYGDLERLQRLVEQE 47

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
           GC VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA DHTGQTALHWSAVRGAIQ A
Sbjct: 48  GCPVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNATDHTGQTALHWSAVRGAIQAA 107

Query: 121 ELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 180
           ELLL+EGARV+AADM GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY
Sbjct: 108 ELLLQEGARVSAADMNGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 167

Query: 181 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
           KGFAD IRLLLFLDA+RGRQD  GCTPLHWAAIRGNLEACTVLVQAGKKEDLM+ DNTGL
Sbjct: 168 KGFADSIRLLLFLDAHRGRQDTGGCTPLHWAAIRGNLEACTVLVQAGKKEDLMLADNTGL 227

Query: 241 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMH 300
           TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNS +GKISKLGLAP LWC+IL++LVTY+H
Sbjct: 228 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSRLGKISKLGLAPVLWCIILVLLVTYIH 287

Query: 301 SVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPL 360
           SVI+A+ +PKLTA  GLLAW GVFLA+ GLV+FYRCS KDPGYIRMN+HD Q+ KDDEPL
Sbjct: 288 SVILATKMPKLTAAAGLLAWFGVFLASVGLVMFYRCSSKDPGYIRMNMHDNQDTKDDEPL 347

Query: 361 LKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 420
           LKIE+NNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW
Sbjct: 348 LKIEINNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 407

Query: 421 DFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFF 480
           DFF+FLVLEV AMLVTG V + RV TDP+AP SFGAW+ Y + +HIGA+SFLIADF LFF
Sbjct: 408 DFFVFLVLEVLAMLVTGGVCLTRVLTDPLAPHSFGAWIQYVANNHIGAISFLIADFFLFF 467

Query: 481 GVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNE 540
           GV  LT VQASQISRNITTNEMANA+RY+YLRG GGRFRNPYDHG K+NCSDFLING+NE
Sbjct: 468 GVFTLTVVQASQISRNITTNEMANAMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNE 527

Query: 541 DVECVEDSAGT-EGIGMMHMSRNSNLQNGDGHIH----HANGNGHVAINV--NSNNTNS- 592
           DVEC+E+   + EGIGMMHM+R+SNL NGD H H      NGNGH AINV  NSN+TNS 
Sbjct: 528 DVECIEELGNSEEGIGMMHMARSSNLANGDSHTHTEYARGNGNGHHAINVDSNSNSTNSK 587

Query: 593 -HHGHL----HSSHCNHSNHGKSKTDSVPLGLGLGLGRSSARSVVAS 634
            HHGH+    HSSHC+H+NHGK++ D+VPLGLGLGLGR+  RSV AS
Sbjct: 588 IHHGHINGHVHSSHCSHNNHGKTRNDNVPLGLGLGLGRN--RSVTAS 632

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446195|ref|XP_002262878.1| PREDICTED: S-acyltransferase TIP1 [Vitis vinifera] gi|296084544|emb|CBI25565.3| unnamed protein product [Vitis vinifera]

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/640 (81%), Positives = 567/640 (88%), Gaps = 11/640 (1%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQ------SSPSNGVVVDEESLRNDVYTAAAYGDLEKLQ 54
           MSSEIEVV+EV +S     N         S   +G+   +ESLRNDVYTAAAYGD+EKLQ
Sbjct: 1   MSSEIEVVDEV-ESRDPAINGGGAAGGGFSGEPSGIGAADESLRNDVYTAAAYGDMEKLQ 59

Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           RLVE EGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA DHTGQTALHW AVR
Sbjct: 60  RLVEFEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAVDHTGQTALHWCAVR 119

Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
           GAIQVAELLL+EGARVN ADMYGYQTTHVAAQYGQTAFLYH+V+KWNADPDVPDNDGRSP
Sbjct: 120 GAIQVAELLLQEGARVNTADMYGYQTTHVAAQYGQTAFLYHVVTKWNADPDVPDNDGRSP 179

Query: 175 LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMV 234
           LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM+
Sbjct: 180 LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMM 239

Query: 235 TDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLM 294
           TDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNS +G++SKLGLAP LWC+ILL+
Sbjct: 240 TDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSRLGQLSKLGLAPILWCIILLL 299

Query: 295 LVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNM 354
           LVTY+HS I+AS LP LTAGFGLLAW GVFLA+ GLV+FY+CS KDPG++RMNV+DPQ+M
Sbjct: 300 LVTYIHSAIIASELPGLTAGFGLLAWFGVFLASAGLVMFYKCSNKDPGFVRMNVNDPQSM 359

Query: 355 KDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCI 414
           KD+EPLLKIE+NNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCI
Sbjct: 360 KDEEPLLKIEINNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCI 419

Query: 415 GKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIA 474
           GKKNKWDFFLFLVLEVSAML+TG+VT+ R+ TDP APSSFGAWM+YA  HHIGA+SFLI 
Sbjct: 420 GKKNKWDFFLFLVLEVSAMLITGSVTLTRILTDPAAPSSFGAWMNYAGRHHIGAISFLIV 479

Query: 475 DFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFL 534
           DF LFFGVA LT VQASQISRNITTNEMANA+RY+YLRG GGRFRNPYD G ++NCSDFL
Sbjct: 480 DFFLFFGVAALTVVQASQISRNITTNEMANAMRYSYLRGPGGRFRNPYDRGLRKNCSDFL 539

Query: 535 INGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHH 594
           ING+NED E +E+ A ++GIGMM M+RNSNLQNGD   HH NGNGHVAINV     NS  
Sbjct: 540 INGYNEDEEHIEEPAHSDGIGMMQMARNSNLQNGDALSHHTNGNGHVAINVK----NSRS 595

Query: 595 GHLHSSHCNHSNHGKSKTDSVPLGLGLGLGRSSARSVVAS 634
            H H    + S+    KT+SVPLGLG+GLGR++ RSVVAS
Sbjct: 596 HHGHVHSSHCSHSNHGKTESVPLGLGIGLGRNNTRSVVAS 635

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443019|ref|XP_004139278.1| PREDICTED: S-acyltransferase TIP1-like [Cucumis sativus]

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/634 (82%), Positives = 574/634 (90%), Gaps = 2/634 (0%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECE 60
           MSSEIEVV+EV    Q    +  +S +NG    +ESLRNDVYTAAAYGDLEKLQRLVECE
Sbjct: 1   MSSEIEVVDEVQSRDQQPSQNASASTANGDA--DESLRNDVYTAAAYGDLEKLQRLVECE 58

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
           GCSVSEPDGLGYYALQWAALNNRTAAA+YIIEHGGDVNAADHTGQTALHWSAVRGAIQVA
Sbjct: 59  GCSVSEPDGLGYYALQWAALNNRTAAARYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 118

Query: 121 ELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 180
           E+LL+EGA VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY
Sbjct: 119 EVLLQEGAVVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 178

Query: 181 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
           KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDL+VTDNTGL
Sbjct: 179 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLVVTDNTGL 238

Query: 241 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMH 300
           TPAQLASDKNHRQVAFFLGNARRLLDKRCDGN+ +GK SKLGLAP LWC+I L+LVTY+H
Sbjct: 239 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNTRLGKFSKLGLAPVLWCLIFLLLVTYIH 298

Query: 301 SVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPL 360
           SVI+ASNLPKL +G GLLAW GVFLAT GL++FYRCS KDPG+IRM+VHD +NMKDDEPL
Sbjct: 299 SVILASNLPKLPSGLGLLAWMGVFLATTGLLMFYRCSSKDPGFIRMDVHDSENMKDDEPL 358

Query: 361 LKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 420
           LKIE+NNPALLAGNWSQLCATCKIVRPLRAKHCSTC+RCVEQFDHHCPWVSNCIGKKNKW
Sbjct: 359 LKIEVNNPALLAGNWSQLCATCKIVRPLRAKHCSTCNRCVEQFDHHCPWVSNCIGKKNKW 418

Query: 421 DFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFF 480
           DFF+FL+LEVSAML+TGAVT+ RV TDP +PSSFGAW+++   HH+GA+SFLI DF LFF
Sbjct: 419 DFFIFLILEVSAMLITGAVTITRVITDPSSPSSFGAWINHIGNHHVGAISFLIVDFFLFF 478

Query: 481 GVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNE 540
           GVAVLT VQASQISRNITTNEMANA+RY+YLRG GGRFRNPYDHG ++NCSDFLI G+NE
Sbjct: 479 GVAVLTIVQASQISRNITTNEMANAMRYSYLRGPGGRFRNPYDHGIRKNCSDFLIKGYNE 538

Query: 541 DVECVEDSAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHGHLHSS 600
           D+E  E S+ +E +  M    NS LQNGD H HHANGN H+AIN+NS NT SHHGH HSS
Sbjct: 539 DIEYNESSSHSEEMEAMSSPMNSVLQNGDSHSHHANGNNHIAINMNSKNTTSHHGHSHSS 598

Query: 601 HCNHSNHGKSKTDSVPLGLGLGLGRSSARSVVAS 634
           +C+HSNHGK+K D+VPLGLGLGLGR S RSV AS
Sbjct: 599 NCSHSNHGKAKNDAVPLGLGLGLGRLSTRSVAAS 632

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478389|ref|XP_003609480.1| S-acyltransferase TIP1 [Medicago truncatula] gi|355510535|gb|AES91677.1| S-acyltransferase TIP1 [Medicago truncatula]

 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/642 (79%), Positives = 563/642 (87%), Gaps = 13/642 (2%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECE 60
           MSSEIEVVEEV QS ++  +   SS S+  VVDE + RNDVYTAAAYGDLEKL RLVE E
Sbjct: 1   MSSEIEVVEEV-QSRRDQQSPPSSSSSSSAVVDEVASRNDVYTAAAYGDLEKLHRLVEIE 59

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
           GC V+EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA DH+GQTALHWSAVRGAIQVA
Sbjct: 60  GCLVNEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNATDHSGQTALHWSAVRGAIQVA 119

Query: 121 ELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 180
           ELLL+EGARVNAADM GYQ THVAAQYGQTAFLY+++SKWNADPD PD DGR PLHWAAY
Sbjct: 120 ELLLQEGARVNAADMNGYQITHVAAQYGQTAFLYYVISKWNADPDAPDKDGRCPLHWAAY 179

Query: 181 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
           KGFADCIRLLLFLDA+RGR DK+G TPLHWAA+RGNLEACTVLVQAGKKEDL+VTD +GL
Sbjct: 180 KGFADCIRLLLFLDAHRGRPDKDGTTPLHWAAMRGNLEACTVLVQAGKKEDLVVTDISGL 239

Query: 241 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMH 300
           TPAQLASD+ HRQVAFFLGNAR LLDK  D NS +GKISKLGLAP LWC+I ++LVTY+H
Sbjct: 240 TPAQLASDRKHRQVAFFLGNARMLLDKSFDSNSRLGKISKLGLAPVLWCIIFVLLVTYIH 299

Query: 301 SVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPL 360
           SVI+A+N+PKLTA  GL AW GV LAT GLV+FYRCS KDPGYIR N HD QNMKDDEPL
Sbjct: 300 SVILATNMPKLTASAGLFAWFGVLLATVGLVMFYRCSSKDPGYIRTNGHDTQNMKDDEPL 359

Query: 361 LKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 420
           LKIE NNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW
Sbjct: 360 LKIEKNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 419

Query: 421 DFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFF 480
           DFF FL+LEVSAMLVTG V + RV TDP+APSSFGAW++YA  +HIGA+SFLIADF LFF
Sbjct: 420 DFFAFLILEVSAMLVTGGVCLTRVLTDPLAPSSFGAWINYAGKNHIGAISFLIADFFLFF 479

Query: 481 GVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNE 540
           GV  LTAVQASQISRNITTNEMANALRY+YLRG GGRFRNPYDHG K+NCSDFLING+NE
Sbjct: 480 GVFALTAVQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNE 539

Query: 541 DVECVEDSAGT-EGIGMMHMSRNSNLQNGDGHIH----HANGNGHVAINVNSNNTNS--H 593
           D+E VE+S  + EG+GMMHM+R S + NGD H H    + NGNGHV INV+SN+TNS  H
Sbjct: 540 DLEYVEESGNSEEGLGMMHMARGSTITNGDSHSHSDHANGNGNGHVVINVDSNSTNSKTH 599

Query: 594 HGH----LHSSHCNHSNHGKSKTDSVPLGLGLGLGRSSARSV 631
           HGH    +HSSHC+HSN GK++ DS+P+GLGLGLGR++ RSV
Sbjct: 600 HGHSNGHVHSSHCSHSNQGKTRNDSIPVGLGLGLGRNT-RSV 640

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120466|ref|XP_002331055.1| predicted protein [Populus trichocarpa] gi|222872985|gb|EEF10116.1| predicted protein [Populus trichocarpa]

 Score = 1006 bits (2600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/643 (78%), Positives = 539/643 (83%), Gaps = 47/643 (7%)

Query: 1   MSSEIEVVEE--VGQSSQNHHNHDQSSPSNG-------VVVDEESLRNDVYTAAAYGDLE 51
           M SEIE+VEE  V QS     N  +S+  NG        V  E+SLRNDVYTAAAYGDLE
Sbjct: 1   MPSEIEIVEEDVVAQS-----NDRESAAVNGGISNNGVAVAGEDSLRNDVYTAAAYGDLE 55

Query: 52  KLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS 111
           KLQRLVE EGCSVS PD LGYYALQWAALNNRTAAAQYIIEHGGDVN  DHTGQTALHW+
Sbjct: 56  KLQRLVESEGCSVSVPDNLGYYALQWAALNNRTAAAQYIIEHGGDVNVVDHTGQTALHWT 115

Query: 112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDG 171
           AVRGAIQVAELLL+EGA VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD DG
Sbjct: 116 AVRGAIQVAELLLQEGAGVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDFDG 175

Query: 172 RSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 231
           RSPLHWAAYKGFAD IRLLLFLD+YRGRQD+EGCTPLHWAAIRGNLEACTVLVQAGKKED
Sbjct: 176 RSPLHWAAYKGFADSIRLLLFLDSYRGRQDREGCTPLHWAAIRGNLEACTVLVQAGKKED 235

Query: 232 LMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVI 291
           LMVTDNTGLTPAQLASDKNHRQVAFFL                              C I
Sbjct: 236 LMVTDNTGLTPAQLASDKNHRQVAFFL-----------------------------VCTI 266

Query: 292 LLMLVTYMHSVIM--ASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVH 349
             +   + H + +  ASNLPKLTAGFGLLAW  VFLATGGLV+FYRCSRKDPGYIRMNVH
Sbjct: 267 YNITFLHFHLITLGAASNLPKLTAGFGLLAWLAVFLATGGLVMFYRCSRKDPGYIRMNVH 326

Query: 350 DPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPW 409
           DPQNMKDDEPLLKIE+NNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPW
Sbjct: 327 DPQNMKDDEPLLKIEINNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPW 386

Query: 410 VSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGAL 469
           VSNCIGKKNKW+FF FLVLEVSAML+TGAVT+ RV TDP APSS GAW+++A +HHIGA+
Sbjct: 387 VSNCIGKKNKWEFFAFLVLEVSAMLITGAVTLTRVLTDPFAPSSLGAWVNHAGSHHIGAI 446

Query: 470 SFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRN 529
           SFLI DF LFFGVAVLT VQASQISRNITTNEMANALRY+YLRG GGRFRNPYDHGCK+N
Sbjct: 447 SFLIMDFFLFFGVAVLTVVQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDHGCKKN 506

Query: 530 CSDFLINGFNEDVECVEDSAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNN 589
           CSDFLING+NEDV+  EDS  +EGIGMMHMSRNSNLQNGD H HH NGNGHVAINVNS N
Sbjct: 507 CSDFLINGYNEDVDYNEDSPHSEGIGMMHMSRNSNLQNGDAHSHHMNGNGHVAINVNSEN 566

Query: 590 TNSHHGHLHSSHCNHSNHGKSKTDSVP-LGLGLGLGRSSARSV 631
                GH+HSSHC+H++ GK +TDS P    GLGLG+SSAR+V
Sbjct: 567 KIP-QGHVHSSHCSHNHQGKPRTDSAPLGLGGLGLGKSSARTV 608

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79517230|ref|NP_197535.2| S-acyltransferase TIP1 [Arabidopsis thaliana] gi|75282678|sp|Q52T38.1|ZDH22_ARATH RecName: Full=S-acyltransferase TIP1; AltName: Full=Ankyrin repeat-containing S-palmitoyltransferase; AltName: Full=Palmitoyltransferase TIP1; AltName: Full=Protein TIP GROWTH DEFECTIVE 1; AltName: Full=Zinc finger DHHC domain-containing protein TIP1 gi|62632827|gb|AAX89384.1| ankryin repeat S-palmitoyl transferase [Arabidopsis thaliana] gi|110737119|dbj|BAF00511.1| ankyrin-repeat protein [Arabidopsis thaliana] gi|332005451|gb|AED92834.1| S-acyltransferase TIP1 [Arabidopsis thaliana] gi|385137892|gb|AFI41207.1| ankyrin protein, partial [Arabidopsis thaliana]

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/635 (77%), Positives = 554/635 (87%), Gaps = 18/635 (2%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECE 60
           MSSEIEVVEE+    Q++   +  S S G+  +EESL+NDVYTAAAYGDLEKL RLVECE
Sbjct: 1   MSSEIEVVEEI----QSNPKENGESSSKGI--EEESLKNDVYTAAAYGDLEKLHRLVECE 54

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
           G SVSEPD LGYYALQW+ALNNR A AQY+IEHGGDVNA DHTGQTALHWSAVRGAIQVA
Sbjct: 55  GSSVSEPDALGYYALQWSALNNRVAVAQYLIEHGGDVNATDHTGQTALHWSAVRGAIQVA 114

Query: 121 ELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 180
           ELLL+EGARV+A DMYGYQ THVAAQYGQTAFL H+VSKWNADPDVPDNDGRSPLHWAAY
Sbjct: 115 ELLLQEGARVDATDMYGYQATHVAAQYGQTAFLCHVVSKWNADPDVPDNDGRSPLHWAAY 174

Query: 181 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
           KGFAD IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM+TD TGL
Sbjct: 175 KGFADSIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMITDKTGL 234

Query: 241 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMH 300
           TPAQLA++KNHRQV+FFLGNAR LL+KRCDG+SP+G++SKLGLAP LW +ILL+L+ Y +
Sbjct: 235 TPAQLAAEKNHRQVSFFLGNARSLLEKRCDGSSPLGRLSKLGLAPVLWIMILLLLLVYTN 294

Query: 301 SVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPL 360
           SV++ASNLPKLT G G LAW G  LAT GL LFYRCSRKDPGYIRMN+HDPQ MKDDEPL
Sbjct: 295 SVVLASNLPKLTTGIGALAWLGFILATAGLFLFYRCSRKDPGYIRMNIHDPQTMKDDEPL 354

Query: 361 LKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 420
           LKIE+NNPALLAGNW+QLCATCKI+RPLRAKHCSTCDRCVEQFDHHCPWVSNC+GKKNKW
Sbjct: 355 LKIELNNPALLAGNWTQLCATCKIIRPLRAKHCSTCDRCVEQFDHHCPWVSNCVGKKNKW 414

Query: 421 DFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFF 480
           +FFLFL+LEV AML+TG VT+ RV +DP APSSFGAWMS+ +++H+GALSFL+ +F LFF
Sbjct: 415 EFFLFLLLEVLAMLITGGVTLARVLSDPSAPSSFGAWMSHVASNHVGALSFLLVEFCLFF 474

Query: 481 GVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNE 540
            VAVLT +QASQISRNITTNEMANALRY+YLRG GGRFRNPYD GC+RNCSDFL+ G+NE
Sbjct: 475 SVAVLTVIQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDLGCRRNCSDFLVKGYNE 534

Query: 541 DVECVEDSAG--TEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHGHLH 598
           D+EC E+ A    EGI MM M RN NLQ         NGNGHVAI+VN  + NS   H+H
Sbjct: 535 DIECHEEDATQRPEGISMMQMQRNPNLQ---------NGNGHVAIDVNPTH-NSQSAHVH 584

Query: 599 SSHCNHSNHGKSKTDSVPLGLGLGLGRSSARSVVA 633
           S++C+HS++ KSK+D+VPLGLGLGL R+  R VV+
Sbjct: 585 SANCSHSHNSKSKSDNVPLGLGLGLSRNPTRPVVS 619

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282023|dbj|BAJ33877.1| unnamed protein product [Thellungiella halophila]

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/588 (79%), Positives = 524/588 (89%), Gaps = 17/588 (2%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECE 60
           MSSEIEVVEEV    Q++   +  S S G+  ++ESL+NDVYTAAAYGDLEKL RLVECE
Sbjct: 1   MSSEIEVVEEV----QSNPKENGESSSKGI--EDESLKNDVYTAAAYGDLEKLHRLVECE 54

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
           GCSVSEPDGLGYYALQW+ALNNRTA AQYIIEHGGD+NA DHTGQTALHWSAVRGAIQVA
Sbjct: 55  GCSVSEPDGLGYYALQWSALNNRTAVAQYIIEHGGDINATDHTGQTALHWSAVRGAIQVA 114

Query: 121 ELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 180
           ELLL+EGARV+A DMYGYQ THVAAQYGQTAFL H+VSKWNADPDVPDNDGRSPLHWAAY
Sbjct: 115 ELLLQEGARVDATDMYGYQPTHVAAQYGQTAFLCHVVSKWNADPDVPDNDGRSPLHWAAY 174

Query: 181 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
           KGFAD IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM+TDNTGL
Sbjct: 175 KGFADSIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMITDNTGL 234

Query: 241 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMH 300
           TPAQLA++KNHRQV+FFLGNARRLL+KRCDG+SP+G++SKLGLAP LW +ILL+L+ Y +
Sbjct: 235 TPAQLAAEKNHRQVSFFLGNARRLLEKRCDGSSPLGRLSKLGLAPVLWFMILLLLLIYTN 294

Query: 301 SVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPL 360
           SVI+ASNLPKLT G G LAW G  LAT GL LFYRCS+KDPGYIRMN+HDPQ MKDDEPL
Sbjct: 295 SVILASNLPKLTTGIGALAWLGFLLATAGLFLFYRCSKKDPGYIRMNIHDPQTMKDDEPL 354

Query: 361 LKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 420
           LKIE+NNPALLAGNW+QLCATCKI+RPLRAKHCSTCDRCVEQFDHHCPWVSNC+GKKNKW
Sbjct: 355 LKIELNNPALLAGNWTQLCATCKIIRPLRAKHCSTCDRCVEQFDHHCPWVSNCVGKKNKW 414

Query: 421 DFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFF 480
           DFFLFL+LEV AML+TG VT+ RV +DP+APSSFGAWMS+ +++H+GALSFL+ +F LFF
Sbjct: 415 DFFLFLLLEVLAMLITGGVTLARVLSDPLAPSSFGAWMSHVASNHVGALSFLLVEFCLFF 474

Query: 481 GVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNE 540
            VAVLT +Q SQISRNITTNEMANALRY+YLRG GGRFRNPYD GC+RNCSDFL+ G+NE
Sbjct: 475 SVAVLTVIQGSQISRNITTNEMANALRYSYLRGPGGRFRNPYDLGCRRNCSDFLVKGYNE 534

Query: 541 DVECVED--SAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVN 586
           D+EC E+  +   EGI MM M R+SN+Q         NGNGHVAI+VN
Sbjct: 535 DIECHEEDTTPRQEGISMMQMQRSSNIQ---------NGNGHVAIDVN 573

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357123214|ref|XP_003563307.1| PREDICTED: S-acyltransferase TIP1-like [Brachypodium distachyon]

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/633 (67%), Positives = 515/633 (81%), Gaps = 11/633 (1%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQSSP--SNGVVV--DEESLRNDVYTAAAYGDLEKLQRL 56
           M+SEIEV+E+   ++        S+     G V   ++E L++DVYTAAAYGDLEKLQRL
Sbjct: 1   MASEIEVLEDTTTATTTVSVAVDSAAVAEKGAVPSKEDEPLKDDVYTAAAYGDLEKLQRL 60

Query: 57  VECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA 116
           VE EG  V+EPDGLGY+ALQWAALNNR AAAQYI+EHG DVNA DHTGQTALHWS+VRG 
Sbjct: 61  VEAEGRPVAEPDGLGYHALQWAALNNRVAAAQYILEHGADVNAVDHTGQTALHWSSVRGH 120

Query: 117 IQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLH 176
           IQVAELLL+EGA+V+AAD+YGYQ+THVAAQYGQT+F+YH+V+KWNADPDVPDNDGRSPLH
Sbjct: 121 IQVAELLLKEGAKVDAADLYGYQSTHVAAQYGQTSFIYHVVAKWNADPDVPDNDGRSPLH 180

Query: 177 WAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTD 236
           WAAYKGFAD IRLLL+LDAYR R+DKEGCTPLHWAAIRGN+EACTVLVQAGKK+DLMV D
Sbjct: 181 WAAYKGFADSIRLLLYLDAYRVREDKEGCTPLHWAAIRGNMEACTVLVQAGKKDDLMVKD 240

Query: 237 NTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLV 296
            TGLTPAQLA+DKNHRQVAFFL NARR+ D+ C+GN+   K+SKLGLAP LWC+ +++L 
Sbjct: 241 KTGLTPAQLAADKNHRQVAFFLDNARRVHDRGCNGNATFAKLSKLGLAPLLWCIAIVLLA 300

Query: 297 TYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKD 356
           TY+HSVI    +  +TA F L AWSGVFLAT GL++FYRCSRKDPGYI  N+ D QN +D
Sbjct: 301 TYIHSVIAGQYIMDMTAPFALFAWSGVFLATAGLIMFYRCSRKDPGYISANIRDSQNQRD 360

Query: 357 DEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGK 416
           DEPLLK+E++NPALL GNWSQLC TCKIVRP+R+KHCSTCDRCVEQFDHHCPWVSNCIGK
Sbjct: 361 DEPLLKMELDNPALLTGNWSQLCITCKIVRPVRSKHCSTCDRCVEQFDHHCPWVSNCIGK 420

Query: 417 KNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADF 476
           KNKWDFF+F+ LEV AM++TG+  +IR   DP +P+SFGAW+ Y++ HH GA+SF   D 
Sbjct: 421 KNKWDFFMFITLEVFAMIITGSAAIIRTVRDPASPASFGAWLGYSAVHHPGAVSFFFMDL 480

Query: 477 SLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLIN 536
            LF GVA LT VQASQI+RNITTNEM N++RY+YLRG GGRFRNP+DHG ++NC+DFL+N
Sbjct: 481 FLFCGVAGLTVVQASQIARNITTNEMVNSMRYSYLRGPGGRFRNPFDHGVRKNCADFLLN 540

Query: 537 GFNEDVECVEDSAGT-EGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHG 595
           G+NEDVE +E ++ T E IGM+ M+   + QNG+G  HH NG  H  ++ ++++ +    
Sbjct: 541 GYNEDVERLEHTSHTDEEIGMIQMTSAVS-QNGEGSSHHGNGTDHACVDSHASSNSHSQV 599

Query: 596 HLHSSHCNHSNHGKSKTDSVPLGLGLGLGRSSA 628
                 C+HS     K D  P GLGLGLGR+SA
Sbjct: 600 SSSQC-CDHSK----KNDRTPFGLGLGLGRNSA 627

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413954646|gb|AFW87295.1| hypothetical protein ZEAMMB73_866253 [Zea mays]

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/633 (69%), Positives = 511/633 (80%), Gaps = 10/633 (1%)

Query: 1   MSSEIEVVEEVGQSSQNHHNHDQSSPSNG----VVVDEESLRNDVYTAAAYGDLEKLQRL 56
           M+SEIEV+E+   SS +      + PS         +++SL+NDVYTAAAYGDLEKLQRL
Sbjct: 1   MASEIEVLEDTTTSSTSLVAAASTVPSLAEGAEAPAEDDSLKNDVYTAAAYGDLEKLQRL 60

Query: 57  VECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA 116
           VE EG  V+EPDG GY+ALQWAALNNR AAAQYI+EHG D+NA DHTGQTALHWSAVRG 
Sbjct: 61  VEGEGRPVTEPDGGGYHALQWAALNNRVAAAQYILEHGADINAVDHTGQTALHWSAVRGH 120

Query: 117 IQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLH 176
           IQVAELLL+EGA+V+A D+YGYQ THVAAQYGQTAF+YHIV+KWNADPD+PDNDGRSPLH
Sbjct: 121 IQVAELLLKEGAKVDATDLYGYQATHVAAQYGQTAFIYHIVAKWNADPDIPDNDGRSPLH 180

Query: 177 WAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTD 236
           WAAYKGFAD IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ GKK+DLMV D
Sbjct: 181 WAAYKGFADSIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQVGKKDDLMVKD 240

Query: 237 NTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLV 296
            TGLTPAQLA+DKNHRQVAFFL NARR+  K C  N+  GK+SKLGLAP LWC I+ ML+
Sbjct: 241 KTGLTPAQLAADKNHRQVAFFLDNARRVHGKGCGANTRFGKLSKLGLAPLLWCTIIGMLI 300

Query: 297 TYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKD 356
           TY HSVI        TA FG+ AWSGVFLAT GLV+FY+CSRKDPGYI +N    QN +D
Sbjct: 301 TYTHSVISGQYAMTTTAPFGIFAWSGVFLATAGLVMFYKCSRKDPGYININARGSQNQRD 360

Query: 357 DEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGK 416
           DEPLLK+E+ NPALL+GNWSQLC TCKIVRP+R+KHCSTCDRCVEQFDHHCPWVSNCIGK
Sbjct: 361 DEPLLKMELENPALLSGNWSQLCITCKIVRPVRSKHCSTCDRCVEQFDHHCPWVSNCIGK 420

Query: 417 KNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADF 476
           KNKW+FF+FL LEV AM++TG+  +IR+  DP +PSSFGAW+ Y++  H G +SFL  D 
Sbjct: 421 KNKWEFFMFLTLEVFAMIITGSAAIIRIVRDPNSPSSFGAWIHYSAFQHPGVVSFLALDC 480

Query: 477 SLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLIN 536
            LFFGVAVLT VQASQI+RNITTNEMAN++RY YLRG GGRFRNPYDHG ++NCSDFL+N
Sbjct: 481 FLFFGVAVLTVVQASQIARNITTNEMANSMRYAYLRGPGGRFRNPYDHGIRKNCSDFLLN 540

Query: 537 GFNEDVECVEDSAGT-EGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHG 595
           G+NED E +E +  T E +GM+ M+   + QNGD H+HH NG  H +  V+  N+  H  
Sbjct: 541 GYNEDTERLEQTLPTDEEMGMIQMTSAVSQQNGDNHLHHGNGTDH-SCAVSQANSKPHSQ 599

Query: 596 HLHSSHCNHSNHGKSKTDSVPLGLGLGLGRSSA 628
              S  C+HS     +TD  PLGLGLGLGR+SA
Sbjct: 600 VGSSQCCDHSK----RTDRTPLGLGLGLGRNSA 628

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093712|ref|XP_002437346.1| hypothetical protein SORBIDRAFT_10g025310 [Sorghum bicolor] gi|241915569|gb|EER88713.1| hypothetical protein SORBIDRAFT_10g025310 [Sorghum bicolor]

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/635 (69%), Positives = 515/635 (81%), Gaps = 13/635 (2%)

Query: 1   MSSEIEVVEEVGQSSQN------HHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQ 54
           M+SEIEV+E+   SS +            ++   G   ++ESL+NDVYTAAAYGDLEKLQ
Sbjct: 1   MASEIEVLEDTTTSSTSLVAAAAAAAAPSAAEGAGAPAEDESLKNDVYTAAAYGDLEKLQ 60

Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           RLVE EG  V+EPDG GY+ALQWAALNNR AAAQYI+EHG D+NA DHTGQTALHWSAVR
Sbjct: 61  RLVEGEGRPVTEPDGGGYHALQWAALNNRVAAAQYILEHGADINAVDHTGQTALHWSAVR 120

Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
           G IQVAELLL+EGA+V+AAD+YGYQ THVAAQYGQTAF+YHIV+KWNADPD+PDNDGRSP
Sbjct: 121 GHIQVAELLLKEGAKVDAADLYGYQATHVAAQYGQTAFIYHIVAKWNADPDIPDNDGRSP 180

Query: 175 LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMV 234
           LHWAAYKGFAD IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ GKK+DLMV
Sbjct: 181 LHWAAYKGFADSIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQVGKKDDLMV 240

Query: 235 TDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLM 294
            D TGLTPAQLA+DKNHRQVAFFL NARR+ D+ C  N+  GK+SKLGLAP LWC I+ M
Sbjct: 241 KDKTGLTPAQLAADKNHRQVAFFLDNARRVHDRGCGANTRFGKLSKLGLAPLLWCTIIGM 300

Query: 295 LVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNM 354
           L+ YMHSVI       +TA FG+ AWSGVFLAT GLV+FY+CSRKDPGYI +N    QN 
Sbjct: 301 LIIYMHSVISGQYATTMTAPFGMFAWSGVFLATAGLVMFYKCSRKDPGYININTRGSQNQ 360

Query: 355 KDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCI 414
           +DDEPLLK+E+ NPALL+GNWSQLC TCKIVRP+R+KHCSTCDRCVEQFDHHCPWVSNCI
Sbjct: 361 RDDEPLLKMELENPALLSGNWSQLCITCKIVRPVRSKHCSTCDRCVEQFDHHCPWVSNCI 420

Query: 415 GKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIA 474
           GKKNKW+FF+FL LEV AM++TG+  +IR+  DP +PSSFGAW+ Y++  H G +SFL  
Sbjct: 421 GKKNKWEFFMFLTLEVFAMIITGSAAIIRIVRDPDSPSSFGAWIHYSAFQHPGVVSFLAL 480

Query: 475 DFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFL 534
           D  LFFGVAVLT VQASQI+RNITTNEMAN++RY YLRG GGRFRNPYDHG ++NCSDFL
Sbjct: 481 DCFLFFGVAVLTVVQASQIARNITTNEMANSMRYAYLRGPGGRFRNPYDHGIRKNCSDFL 540

Query: 535 INGFNEDVECVEDSAGT-EGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSH 593
            NG+NED E ++ +  T E +GM+ M+   + QNGD H+HHANG  H   +  +N  +  
Sbjct: 541 FNGYNEDTERLDQALHTDEEMGMIQMTSAVS-QNGDNHLHHANGTDHSCADSQAN--SKP 597

Query: 594 HGHLHSSHCNHSNHGKSKTDSVPLGLGLGLGRSSA 628
           H  + SS C   +H K KTD  PLGLGLGLGR+SA
Sbjct: 598 HSQVGSSQC--CDHSK-KTDRTPLGLGLGLGRNSA 629

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	634
TAIR|locus:2149309	620	TIP1 "TIP GROWTH DEFECTIVE 1"	0.973	0.995	0.741	1.4e-259
TAIR|locus:1006230134	536	AT2G14255 "AT2G14255" [Arabido	0.799	0.945	0.521	2e-143
FB|FBgn0029137	585	Patsas "Patsas" [Drosophila me	0.738	0.8	0.313	7.8e-55
ZFIN|ZDB-GENE-070424-194	620	zdhhc17 "zinc finger, DHHC-typ	0.358	0.366	0.331	7e-49
UNIPROTKB|F1N9E7	601	ZDHHC17 "Uncharacterized prote	0.347	0.366	0.330	1.3e-48
UNIPROTKB|F1PRB8	604	ZDHHC17 "Uncharacterized prote	0.315	0.331	0.331	1.4e-47
UNIPROTKB|E1BJK1	634	ZDHHC17 "Uncharacterized prote	0.315	0.315	0.331	1.8e-47
MGI|MGI:2445110	632	Zdhhc17 "zinc finger, DHHC dom	0.315	0.316	0.331	3.9e-47
FB|FBgn0259824	637	Hip14 "Huntingtin-interacting	0.320	0.318	0.363	1.3e-45
UNIPROTKB|G4N0B3	729	MGG_07382 "Palmitoyltransferas	0.345	0.300	0.318	5.7e-43

TAIR|locus:2149309 TIP1 "TIP GROWTH DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2498 (884.4 bits), Expect = 1.4e-259, P = 1.4e-259
 Identities = 471/635 (74%), Positives = 523/635 (82%)

Query:     1 MSSEIEVVEEVGXXXXXXXXXXXXXXXXGVVVDEESLRNDVYTAAAYGDLEKLQRLVECE 60
             MSSEIEVVEE+                 G+  +EESL+NDVYTAAAYGDLEKL RLVECE
Sbjct:     1 MSSEIEVVEEI----QSNPKENGESSSKGI--EEESLKNDVYTAAAYGDLEKLHRLVECE 54

Query:    61 GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
             G SVSEPD LGYYALQW+ALNNR A AQY+IEHGGDVNA DHTGQTALHWSAVRGAIQVA
Sbjct:    55 GSSVSEPDALGYYALQWSALNNRVAVAQYLIEHGGDVNATDHTGQTALHWSAVRGAIQVA 114

Query:   121 ELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY 180
             ELLL+EGARV+A DMYGYQ THVAAQYGQTAFL H+VSKWNADPDVPDNDGRSPLHWAAY
Sbjct:   115 ELLLQEGARVDATDMYGYQATHVAAQYGQTAFLCHVVSKWNADPDVPDNDGRSPLHWAAY 174

Query:   181 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
             KGFAD IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM+TD TGL
Sbjct:   175 KGFADSIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMITDKTGL 234

Query:   241 TPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMH 300
             TPAQLA++KNHRQV+FFLGNAR LL+KRCDG+SP+G++SKLGLAP LW +ILL+L+ Y +
Sbjct:   235 TPAQLAAEKNHRQVSFFLGNARSLLEKRCDGSSPLGRLSKLGLAPVLWIMILLLLLVYTN 294

Query:   301 SVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPL 360
             SV++ASNLPKLT G G LAW G  LAT GL LFYRCSRKDPGYIRMN+HDPQ MKDDEPL
Sbjct:   295 SVVLASNLPKLTTGIGALAWLGFILATAGLFLFYRCSRKDPGYIRMNIHDPQTMKDDEPL 354

Query:   361 LKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKW 420
             LKIE+NNPALLAGNW+QLCATCKI+RPLRAKHCSTCDRCVEQFDHHCPWVSNC+GKKNKW
Sbjct:   355 LKIELNNPALLAGNWTQLCATCKIIRPLRAKHCSTCDRCVEQFDHHCPWVSNCVGKKNKW 414

Query:   421 DFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFF 480
             +FFLFL+LEV AML+TG VT+ RV +DP APSSFGAWMS+ +++H+GALSFL+ +F LFF
Sbjct:   415 EFFLFLLLEVLAMLITGGVTLARVLSDPSAPSSFGAWMSHVASNHVGALSFLLVEFCLFF 474

Query:   481 GVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNE 540
              VAVLT +QASQISRNITTNEMANALRY+YLRG GGRFRNPYD GC+RNCSDFL+ G+NE
Sbjct:   475 SVAVLTVIQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDLGCRRNCSDFLVKGYNE 534

Query:   541 DVECVEDSAGT--EGIGMMHMSRNSNLQNGDGHIHHANGNGHVAIXXXXXXXXXXXXXXX 598
             D+EC E+ A    EGI MM M RN NLQNG         NGHVAI               
Sbjct:   535 DIECHEEDATQRPEGISMMQMQRNPNLQNG---------NGHVAIDVNPTHNSQSAHVHS 585

Query:   599 XXXXXXXXXGKSKTDSVPXXXXXXXXRSSARSVVA 633
                       KSK+D+VP        R+  R VV+
Sbjct:   586 ANCSHSHNS-KSKSDNVPLGLGLGLSRNPTRPVVS 619

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000035 "acyl binding" evidence=IDA

GO:0016417 "S-acyltransferase activity" evidence=IGI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0009932 "cell tip growth" evidence=IMP

TAIR|locus:1006230134 AT2G14255 "AT2G14255" [Arabidopsis thaliana (taxid:3702)]

 Score = 1402 (498.6 bits), Expect = 2.0e-143, P = 2.0e-143
 Identities = 266/510 (52%), Positives = 348/510 (68%)

Query:    40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA 99
             DV++A+AYGDL +L+  VE  G SVS PD  G+YALQWAALNN    AQYII+HGGDVN+
Sbjct:    27 DVFSASAYGDLHQLKHFVEHNGSSVSLPDDNGFYALQWAALNNSLHVAQYIIQHGGDVNS 86

Query:   100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK 159
             AD+  QT LHW+AV+G+I VA+LLL+ GAR+ A D+ G++  HVA+QYGQTAF+ HI+  
Sbjct:    87 ADNIQQTPLHWAAVKGSIDVADLLLQHGARIEAVDVNGFRAVHVASQYGQTAFVNHIIVD 146

Query:   160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEA 219
             + AD +  D +GRSPLHWAAY GF + +RLLLF DA + RQD  GCTPLHWA I+ N+EA
Sbjct:   147 YAADYNALDIEGRSPLHWAAYNGFTETVRLLLFRDACQNRQDNTGCTPLHWAVIKENVEA 206

Query:   220 CTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKIS 279
             CT+LV AG KE+L++ DNTG TP +LASDK HRQ+A FL  A R            GK+ 
Sbjct:   207 CTLLVHAGTKEELILKDNTGSTPLKLASDKGHRQLALFLSKAMRTRKNSFVDKIFCGKLG 266

Query:   280 KLGLAPALWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRK 339
             +   AP L+ +I++++V ++ S++ ASNLPK+TA  GL A  G+      L+ FYR SRK
Sbjct:   267 ETSYAPMLFSLIVILMVLFITSIVSASNLPKITAMVGLWACFGLSCGVYALITFYRVSRK 326

Query:   340 DPGYI-RMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDR 398
             DPGY+ R    + Q+  +D PL+ I   NP+   GNWSQLC TCKI+RP+R+KHC TC R
Sbjct:   327 DPGYVKRTGEANSQHTAND-PLIDINFKNPSW-KGNWSQLCPTCKIIRPVRSKHCPTCKR 384

Query:   399 CVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWM 458
             CVEQFDHHCPW+SNC+GKKNK  F +F+++      V G   V R++          +W+
Sbjct:   385 CVEQFDHHCPWISNCVGKKNKRYFLVFVIMGALTSFVGGTTAVQRLWRGIPQVHHGESWI 444

Query:   459 SYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRF 518
              +    H  A  FL  D  +F     LT  Q+  I+RNITTNE+ NA R++YLRG  GRF
Sbjct:   445 KHIVIEHPDAAVFLFFDLLIFIATMTLTISQSYMIARNITTNELWNAKRFSYLRGPDGRF 504

Query:   519 RNPYDHGCKRNCSDFLINGFNEDVECVEDS 548
              NPY+HG +RNC+DFL++G+  D E V  S
Sbjct:   505 YNPYNHGLRRNCTDFLVHGYTRDDEVVPSS 534

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

FB|FBgn0029137 Patsas "Patsas" [Drosophila melanogaster (taxid:7227)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 160/510 (31%), Positives = 246/510 (48%)

Query:    39 NDVYTAAAYGDLEKLQRLVECEGCS-VSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-- 95
             +D++     G++ +++ LV+  G   +S  D  GY    W ALN      +Y+IE     
Sbjct:    88 DDIFDIIKNGEVSEVENLVDKFGMECLSARDRHGYTPAHWIALNGNVQLMRYLIERTAPI 147

Query:    96 DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYH 155
             D+      G   +HW+  +G   V ++LL+ G  VNAAD  G    H+A  YG+TA   +
Sbjct:   148 DLPCLGTQGPRPIHWACRKGHASVVQVLLQAGVAVNAADFKGLTPLHLACMYGRTATAAY 207

Query:   156 IVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG 215
             ++    A  ++ D +G + LHWAAYKG AD +RLL++      + D  G TPLH A + G
Sbjct:   208 LLGM-GALNNLTDINGDTALHWAAYKGHADLMRLLMYSGVELQKTDNFGSTPLHLACLSG 266

Query:   216 NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL-GNARRLLDKRCDGNSP 274
             N+  C  L+    + DL   D  G TP  LA    H+ V   L G  ++        +  
Sbjct:   267 NM-TCVRLLCEKSQLDLEPRDKNGKTPIMLAQAHQHQDVVRLLYGEVKKKSRWIPSVSES 325

Query:   275 IGKI------SKLGLAPALWCVILLMLVTYM-HSVIMASNLPKLTAGFGLLAWSGVFLAT 327
              G +      SK  L   L+ V+L     YM  ++ +  N+ +  + +  + W+ V   +
Sbjct:   326 WGWLFGGAGDSKGPLFLFLFSVLLWGYPMYMIRAIPITWNILR-RSHYCFIYWNAVMWIS 384

Query:   328 GGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLL-KIEMNNPALLAGNWSQLCATCKIVR 386
               +      +R+DPGYI ++           P   K++  N  L     ++LC +C+ +R
Sbjct:   385 WAIA-----NRRDPGYIPLSSDAYYRAIKQIPYFDKLKKRNVML-----TRLCHSCRCLR 434

Query:   387 PLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFT 446
             PLRAKHC  C+RCV  FDHHCP++ NC+G +N+  FFLF VL V+   V  + T+   F 
Sbjct:   435 PLRAKHCRVCNRCVSYFDHHCPFIYNCVGLRNRMWFFLF-VLSVA---VNCSFTIY--FA 488

Query:   447 DPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVA-VLTAVQASQISRNITTNEMANA 505
                     G  M Y     +G +  ++     F G+  +LT         N+TTNEM N 
Sbjct:   489 CYCVMIE-GFTMLYV----LGLIEAVV-----FCGLGWILTCTSILHACMNLTTNEMFNY 538

Query:   506 LRYNYLRGAGGRFRNPYDHGCKRNCSDFLI 535
              RY YLR   GR++NP+  G   N  +F +
Sbjct:   539 KRYPYLRDKRGRYQNPFSRGPILNLLEFFV 568

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISS

GO:0018345 "protein palmitoylation" evidence=ISS

ZFIN|ZDB-GENE-070424-194 zdhhc17 "zinc finger, DHHC-type containing 17" [Danio rerio (taxid:7955)]

 Score = 296 (109.3 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
 Identities = 78/235 (33%), Positives = 117/235 (49%)

Query:    32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYII 91
             VD+ S   D+  A  YG  E+ + LVE  G  V +PD      L WAA+NNR    +Y I
Sbjct:    41 VDDYSTW-DIVKATQYGIFERCRELVEA-GYDVRQPDKENVTLLHWAAINNRVDLVKYYI 98

Query:    92 EHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
               G  V+        T LHW+  +G + +   L++ GA  +  D  G    H+AAQ+G T
Sbjct:    99 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCVHLAAQFGHT 158

Query:   151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA-DCIRLLLFLDAYRGRQDK-EGCTPL 208
             + + ++++K   D D+ D +G +PL WAAY+  + D  RLLL  +      DK    T L
Sbjct:   159 SIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 217

Query:   209 HWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
             HWA + GN    ++L++A    D    +  G TP  LA  + +  +   L  AR+
Sbjct:   218 HWAVLAGNTTVISLLLEANANVDAQ--NIKGETPLDLAKQRKNVWMINHLQEARQ 270

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N9E7 ZDHHC17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 294 (108.6 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
 Identities = 75/227 (33%), Positives = 114/227 (50%)

Query:    40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA 99
             D+  A  YG  E+ + LVE  G  V +PD      L WAA+NNR    +Y I  G  V+ 
Sbjct:    29 DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 87

Query:   100 -ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
                    T LHW+  +G + +   L++ GA  +  D  G    H+AAQ+G T+ + ++++
Sbjct:    88 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 147

Query:   159 KWNADPDVPDNDGRSPLHWAAYKGFA-DCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGN 216
             K   D D+ D +G +PL WAAY+  + D  RLLL  +      DK    T LHWA + GN
Sbjct:   148 K-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 206

Query:   217 LEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
                 ++L++AG   D    +  G +P  LA  + +  +   L  AR+
Sbjct:   207 TTVISLLLEAGANVDAQ--NIKGESPLDLAKQRKNVWMINHLQEARQ 251

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

UNIPROTKB|F1PRB8 ZDHHC17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 287 (106.1 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
 Identities = 72/217 (33%), Positives = 106/217 (48%)

Query:   324 FLATGGLVLFYRCSRK---DPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCA 380
             FLA   + LFY   +    DPG I+    + Q  K       +E+     L  + S  C+
Sbjct:   363 FLANS-VALFYNFGKSWKSDPGIIKAT--EEQKKKTI-----VELAETGSL--DLSIFCS 412

Query:   381 TCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDF--FLFLVLEVSAMLVTGA 438
             TC I +P+R+KHC  C+RC+ +FDHHCPWV NC+G  N   F  +LF +L +   ++ G 
Sbjct:   413 TCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGC 472

Query:   439 VTVIRVFTDPV-APSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQIS-RN 496
             ++   +  +       F  +++  +T         +     F  VAVL   Q  QIS   
Sbjct:   473 ISYWGLHCETTYTKDGFWTYITQIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLG 532

Query:   497 ITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDF 533
             ITTNE  NA RY + +       +P++HGC RN  DF
Sbjct:   533 ITTNERMNARRYKHFKVTTTSIESPFNHGCVRNIIDF 569

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BJK1 ZDHHC17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 287 (106.1 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
 Identities = 72/217 (33%), Positives = 106/217 (48%)

Query:   324 FLATGGLVLFYRCSRK---DPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCA 380
             FLA   + LFY   +    DPG I+    + Q  K       +E+     L  + S  C+
Sbjct:   393 FLANS-IALFYNFGKSWKSDPGIIKAT--EEQKKKTI-----VELAETGSL--DLSIFCS 442

Query:   381 TCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDF--FLFLVLEVSAMLVTGA 438
             TC I +P+R+KHC  C+RC+ +FDHHCPWV NC+G  N   F  +LF +L +   ++ G 
Sbjct:   443 TCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGC 502

Query:   439 VTVIRVFTDP-VAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQIS-RN 496
             ++   +  +       F  +++  +T         +     F  VAVL   Q  QIS   
Sbjct:   503 ISYWGLHCETSYTKDGFWTYITQIATCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLG 562

Query:   497 ITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDF 533
             ITTNE  NA RY + +       +P++HGC RN  DF
Sbjct:   563 ITTNERMNARRYKHFKVTTTSIESPFNHGCVRNIIDF 599

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2445110 Zdhhc17 "zinc finger, DHHC domain containing 17" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 3.9e-47, Sum P(2) = 3.9e-47
 Identities = 72/217 (33%), Positives = 106/217 (48%)

Query:   324 FLATGGLVLFYRCSRK---DPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCA 380
             FLA   + LFY   +    DPG I+    + Q  K       +E+     L  + S  C+
Sbjct:   391 FLANS-VALFYNFGKSWKSDPGIIKAT--EEQKKKTI-----VELAETGSL--DLSIFCS 440

Query:   381 TCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDF--FLFLVLEVSAMLVTGA 438
             TC I +P+R+KHC  C+RC+ +FDHHCPWV NC+G  N   F  +LF +L +   ++ G 
Sbjct:   441 TCLIRKPVRSKHCGVCNRCIAKFDHHCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGC 500

Query:   439 VTVIRVFTDPV-APSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQIS-RN 496
             V+   +  +       F  +++  +T         +     F  VAVL   Q  QI+   
Sbjct:   501 VSYWGLHCETTYTKDGFWTYITQIATCSPWMFWMFLNSVFHFLWVAVLLMCQLYQITCLG 560

Query:   497 ITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDF 533
             ITTNE  NA RY + +       +P++HGC RN  DF
Sbjct:   561 ITTNERMNARRYKHFKVTTTSIESPFNHGCVRNIIDF 597

GO:0000139 "Golgi membrane" evidence=ISO

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISO

GO:0015693 "magnesium ion transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IDA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISO

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0259824 Hip14 "Huntingtin-interacting protein 14" [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
 Identities = 76/209 (36%), Positives = 105/209 (50%)

Query:    40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA 99
             D+  A  YG + +++ LVE  G  V++PD      L WAA+NNR    +Y +E G  V+A
Sbjct:    48 DIVKATQYGAIARVRELVE-SGWDVNQPDSETVTLLHWAAINNRRDIIRYFLEKGATVDA 106

Query:   100 AD-HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
                    T LHW+  +G +    LL+  GA     D  G    H+AAQ+  TA + + ++
Sbjct:   107 VGGELNATPLHWATRQGHLGAVVLLMAAGADPRIRDAEGCSCIHIAAQFAHTALVAYFIA 166

Query:   159 KWNADPDVPDNDGRSPLHWAAYKGFA-DCIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGN 216
             K   DPD+ D  G + L WAA+K  A D +RLLL L A     D   G T LHWA +  N
Sbjct:   167 K-GVDPDLQDRGGMTALMWAAWKVCALDPVRLLLTLGANPAMVDYTHGNTALHWAILARN 225

Query:   217 LEACTVLVQAGKKEDLMVTDNTGLTPAQL 245
               A + LV   K   L V +  G TP  +
Sbjct:   226 ATAISTLVLKSKAS-LDVPNLRGETPLSM 253

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0045202 "synapse" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0018345 "protein palmitoylation" evidence=ISS

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

UNIPROTKB|G4N0B3 MGG_07382 "Palmitoyltransferase AKR1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 293 (108.2 bits), Expect = 5.7e-43, Sum P(3) = 5.7e-43
 Identities = 71/223 (31%), Positives = 107/223 (47%)

Query:    29 GVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQ 88
             G +   +   ND+   A  GD+  +++L E      +  D  G   L WAA+NN+ A  +
Sbjct:    31 GSIPGGKPAENDIMQLARIGDIPAMEKLFEMGEFDATYSDDEGITPLHWAAINNQYAMCK 90

Query:    89 YIIEHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY 147
             ++IE G  +N     +  T L W+A R       LLL+ GA   A D  GY T H++   
Sbjct:    91 FLIEKGAPINKKGGDSVATPLQWAAQRCHYYTVHLLLQHGADPLATDAQGYNTLHISTFN 150

Query:   148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP 207
             G    L  ++ +     DV D+ G + L W+AYKGF  C+ + L   A    +D++G T 
Sbjct:   151 GNVLLLVLLLHQ-GIPVDVADSYGHTGLMWSAYKGFPACVDVFLRWGASVHARDEQGFTA 209

Query:   208 LHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 250
             LHWA ++G+      +V+ G   D      TG TPA  A + N
Sbjct:   210 LHWALVKGSPGCVQKIVEYGA--DRFAKTETGKTPAITAQELN 250

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q52T38	ZDH22_ARATH	2, ., 3, ., 1, ., -	0.7732	0.9731	0.9951	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	634
pfam01529	167	pfam01529, zf-DHHC, DHHC palmitoyltransferase	1e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-32
COG5273	309	COG5273, COG5273, Uncharacterized protein containi	9e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-12
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	9e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	3e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.003
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.004

>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase

 Score =  125 bits (316), Expect = 1e-33
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 12/176 (6%)

Query: 330 LVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLR 389
           L  +++    DPGY+      P+N  + E   + +  +      +  + C+TC I++P R
Sbjct: 1   LWSYFKTIFTDPGYV------PKNPTEKEQEKQPDEESEEGDEEDELKFCSTCNIIKPPR 54

Query: 390 AKHCSTCDRCVEQFDHHCPWVSNCIGKKN-KWDFFLFLVLEVSAMLVTGAVTVIRVFTDP 448
           + HC  C+RCV +FDHHCPW++NCIG++N K+ F LFL+     +++   ++   +    
Sbjct: 55  SHHCRVCNRCVLRFDHHCPWLNNCIGRRNHKY-FLLFLLYLTLYLILLLVLSFYYLVYLI 113

Query: 449 VAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMAN 504
                F   +         ++  L+        ++ L       I +NITT E   
Sbjct: 114 RNIELFFFLILSL----FSSIILLVLSLFFLLFLSFLLFFHLYLILKNITTYEYIK 165

This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  120 bits (302), Expect = 4e-32
 Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 1/127 (0%)

Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
           NA D  G+T LH +A  G ++V +LLL  GA VNA D  G    H+AA+ G    +  ++
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
            K  AD +  D DG +PLH AA  G  D ++LLL   A    +DK+G TPLH AA  G+L
Sbjct: 61  EK-GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 218 EACTVLV 224
           E   +L+
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

 Score =  119 bits (300), Expect = 9e-30
 Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 24/232 (10%)

Query: 287 LWCVILLMLVTYMHSVIMASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRM 346
           ++  + L+    ++++++      L   F +L    + +       +      DPGY+  
Sbjct: 30  MFIGLFLLSRIVVYTLLVIVKSLSLVVLFIILF---IVILVLASFSYLLLLVSDPGYLGE 86

Query: 347 NVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHH 406
           N+      +    LL                 C+TC I +P R+ HCS C+RCV +FDHH
Sbjct: 87  NITLSGYRETISRLLDDGKFG-------TENFCSTCNIYKPPRSHHCSICNRCVLKFDHH 139

Query: 407 CPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHI 466
           CPW++NC+G +N   F+ FL+  +   LV    T   +             + +     I
Sbjct: 140 CPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICF----LI 195

Query: 467 GALSFLIADFSLFF----------GVAVLTAVQASQISRNITTNEMANALRY 508
              S L   F +             +  LT ++  QISR  +T E     R 
Sbjct: 196 FGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRE 247

Length = 309

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 48/148 (32%), Positives = 65/148 (43%), Gaps = 35/148 (23%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AA+ G LE ++ L+E  G  V+  D  G   L  AA N      + ++E G DVNA D  
Sbjct: 14  AASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD 72

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G T LH +A  G + V +LLL+ G                                  AD
Sbjct: 73  GNTPLHLAARNGNLDVVKLLLKHG----------------------------------AD 98

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLL 191
            +  D DGR+PLH AA  G  + ++LLL
Sbjct: 99  VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 77.3 bits (191), Expect = 2e-17
 Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AA  G+LE ++ L+E  G  V+  D     AL  AA N      + ++EHG DVNA D  
Sbjct: 4   AAKNGNLELVKLLLEK-GADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           G TALH +A  G +++ +LLL  GA +N  D
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 70/244 (28%), Positives = 97/244 (39%), Gaps = 52/244 (21%)

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAA-AQYIIEHGGDVNAADHTGQTALH--WSAVRGAI 117
           G  V+ P+  G+  L     N  T    + +I+ G DVNA D  G+T LH   S      
Sbjct: 73  GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINP 132

Query: 118 QVAELLLREGARVNAADMYGYQTTHV------------------------AAQYGQTAFL 153
           +V  LLLR+GA VNA D+YG     V                             ++   
Sbjct: 133 KVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH 192

Query: 154 YHIVS------------KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL--FLDAYRG- 198
           +H+ S            +   DP   D  G +PLH  A    + C R L+   L A  G 
Sbjct: 193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMAT--GSSCKRSLVLPLLIA--GI 248

Query: 199 ---RQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA-SDKNHRQV 254
               +++ G TPLH+AA+  N  AC  L+  G   D+    + G TP  L   + N R V
Sbjct: 249 SINARNRYGQTPLHYAAVFNNPRACRRLIALG--ADINAVSSDGNTPLSLMVRNNNGRAV 306

Query: 255 AFFL 258
              L
Sbjct: 307 RAAL 310

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 142 HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD 201
           H+AA+ G    +  ++ K  AD ++ D D  + LH AA  G  + ++LLL   A    +D
Sbjct: 2   HLAAKNGNLELVKLLLEK-GADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 202 KEGCTPLHWAAIRGNLEACTVLVQAG 227
           K+G T LH AA  GNLE   +L++ G
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.9 bits (164), Expect = 8e-14
 Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 36/117 (30%)

Query: 75  LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           L  AA N      + ++E G DVN  D    TALH +A  G +++ +LLL  GA VNA  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNA-- 56

Query: 135 MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                                            D DG + LH AA  G  + ++LLL
Sbjct: 57  --------------------------------KDKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 70.2 bits (171), Expect = 2e-13
 Identities = 56/244 (22%), Positives = 84/244 (34%), Gaps = 36/244 (14%)

Query: 18  HHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQW 77
                     +     ++ L   +  A           L       ++  D  G   L  
Sbjct: 20  LVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHS 79

Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRG-----AIQVAELLLREGARVNA 132
           AA        + ++  G DVNA D  G T LH +A+ G      I+VA+LLL  GA    
Sbjct: 80  AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD--- 136

Query: 133 ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF 192
                                           ++ D DG +PLHWAA  G AD + LLL 
Sbjct: 137 ----------------------------LDVNNLRDEDGNTPLHWAALNGDADIVELLLE 168

Query: 193 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 252
             A    ++  G T L  AA  G +E   +L+  G    L+  +  G+  A ++      
Sbjct: 169 AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILN 228

Query: 253 QVAF 256
             + 
Sbjct: 229 LTSL 232

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 65.6 bits (159), Expect = 5e-12
 Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 17/191 (8%)

Query: 111 SAVRGAIQVAELLLREGARV-NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDN 169
           + +  A     LL     R   A D+ G    H AA  G    +  ++    AD +  D 
Sbjct: 46  ALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIV-KLLLASGADVNAKDA 104

Query: 170 DGRSPLHWAAYKG-----FADCIRLLLFLDAYR---GRQDKEGCTPLHWAAIRGNLEACT 221
           DG +PLH AA  G       +  +LLL   A       +D++G TPLHWAA+ G+ +   
Sbjct: 105 DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVE 164

Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDG-----NSPIG 276
           +L++AG   D    ++ G+T    A+     ++   L +    L           N+ + 
Sbjct: 165 LLLEAG--ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVS 222

Query: 277 KISKLGLAPAL 287
           K + L L   +
Sbjct: 223 KRNILNLTSLI 233

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 66.9 bits (163), Expect = 9e-12
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 10/166 (6%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGG--DVNAADHTGQTALHWSAVRGAIQVAELLLREGA 128
           G   ++ A     + A + +++HG   DV   D   ++ LH +   G ++  E LL  G 
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI--ESELHDAVEEGDVKAVEELLDLGK 92

Query: 129 RVNAADMY---GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFAD 185
             +  D++   G    H+A    +   +  ++    ADPD+P+ D  SPLH A   G   
Sbjct: 93  FAD--DVFYKDGMTPLHLATIL-KKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149

Query: 186 CIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 231
            I LL+   A    +D  GCTPL  A  +G++  C +L+ +G   D
Sbjct: 150 GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 175 LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMV 234
           LH AA  G  + ++LLL   A     D    T LH AA  GNLE   +L++ G   D+  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGA--DVNA 56

Query: 235 TDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCD 270
            D  G T   LA+   + ++       + LL+   D
Sbjct: 57  KDKDGNTALHLAARNGNLEI------VKLLLEHGAD 86

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.8 bits (148), Expect = 9e-10
 Identities = 49/163 (30%), Positives = 68/163 (41%), Gaps = 13/163 (7%)

Query: 89  YIIEHGGDVNAADHTGQTALHWSAVRGAIQVAE---LLLREGARVNAADMYGYQTTHVAA 145
            ++  G DVN     G+T LH      + +V +   LLL  GA VNA +  G+   H+  
Sbjct: 32  RLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYL 91

Query: 146 QYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY-KGF---ADCIRLLLFLDAYRGRQD 201
               T  +  ++ K  AD +  D  GR+PLH   Y  GF      IRLLL   A     D
Sbjct: 92  YNATTLDVIKLLIKAGADVNAKDKVGRTPLH--VYLSGFNINPKVIRLLLRKGADVNALD 149

Query: 202 KEGCTPLHWAAIRGNLEACTV--LVQAGKKEDLMVTDNTGLTP 242
             G TPL       N     +  L+ AG   D+   D+   + 
Sbjct: 150 LYGMTPLAVLLKSRNANVELLRLLIDAGA--DVYAVDDRFRSL 190

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 5/196 (2%)

Query: 51  EKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW 110
           + ++ +++C G  V+  D      L +A       + + + E+G DVN  D  G   +H 
Sbjct: 105 DMIKTILDC-GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHI 163

Query: 111 SAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDND 170
           +       + +LLL +GA  N  D  G    H AA+YG  A +  ++   N        +
Sbjct: 164 AIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMNKCKN 222

Query: 171 GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE 230
           G +PLH A           LL  +A    QD +G TPLH  AI    +   + +    K 
Sbjct: 223 GFTPLHNAII--HNRSAIELLINNASINDQDIDGSTPLHH-AINPPCDIDIIDILLYHKA 279

Query: 231 DLMVTDNTGLTPAQLA 246
           D+ + DN G  P   A
Sbjct: 280 DISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 90  IIEHGGDVNAADHTGQTALHWSAVR--GAIQVAELLLREGARVNAADMYGYQTTHVAAQY 147
           ++E+G +VNA D+ G T L ++  +   +  + E LL  GA VN  +  G    H+  + 
Sbjct: 92  LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151

Query: 148 GQTA------FLYHIVS-----------KWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
            +         +   V             +    ++ D  G +PLH+A Y    + ++ L
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYL 211

Query: 191 LFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 235
           L L A     +K G TPLH A +  N E   +L+  G     ++ 
Sbjct: 212 LDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLL 124
           AL  AA++ R    +Y++E G D+N  D  G TALH +A  G ++V +LLL
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 35/123 (28%)

Query: 90  IIEHGGDVNAAD-HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
           ++ +G D+N  D H G TALH++      ++ ELLL  GA VN                 
Sbjct: 153 LLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN----------------- 195

Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPL 208
                            +PD    SPLH A        + +LL   A    +DK G TPL
Sbjct: 196 -----------------IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPL 238

Query: 209 HWA 211
           H +
Sbjct: 239 HIS 241

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 51.5 bits (123), Expect = 7e-07
 Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
           G + +A  LL  G   N     G     +A ++ + +    ++ K  A PDV   D  S 
Sbjct: 13  GELDIARRLLDIGINPNFEIYDGISPIKLAMKF-RDSEAIKLLMKHGAIPDVKYPDIESE 71

Query: 175 LHWAAYKGFADCIRLLLFLDAYRGRQD---KEGCTPLHWAAIRGNLEACTVLVQAGKKED 231
           LH A  +G    +  LL L  +    D   K+G TPLH A I   L+   +L+  G   D
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFA--DDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129

Query: 232 LMVTDNTGLTPAQLA 246
           +  TD    +P  LA
Sbjct: 130 IPNTDKF--SPLHLA 142

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 171 GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV 224
           GR+ LH AA  G  + ++ LL       R D++G T LH AA  GNLE   +L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWA 211
             D +  D +G +PLH AA  G  + ++ LL        +D +G T L  A
Sbjct: 6   PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 30/144 (20%)

Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
            A  G  A L  ++ K   DPD+ D+ GR+PLH AA KG+ DC+ +LL        +D  
Sbjct: 532 VASTGNAALLEELL-KAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN 590

Query: 204 GCTPL----------------HWAAIRGNLEACTVLVQAGKKEDLMV------------- 234
           G T L                H+A+I     A  +L  A K+ DL               
Sbjct: 591 GNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650

Query: 235 TDNTGLTPAQLASDKNHRQVAFFL 258
            D+ G T  Q+A  ++H  +   L
Sbjct: 651 EDHQGATALQVAMAEDHVDMVRLL 674

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 30/189 (15%)

Query: 89  YIIEHGGDVNAADHTGQTALHWSAVRGAIQ-----VAELLLREGARVNAADMYGYQTTHV 143
            ++++G D+N++     T LH+ +           + +LLL  GA VNA D  G      
Sbjct: 53  ILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY 112

Query: 144 AAQYGQTAFLYHIVS---KWNADPDVPDNDGRSPLHWAA--------------YKGF--- 183
           A      +  Y IV       A+ ++ ++DG + LH                  KG    
Sbjct: 113 AISKKSNS--YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN 170

Query: 184 -ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP 242
             + +  LL        +D  G TPLH+A    N E    L+  G   +  + +  G TP
Sbjct: 171 AKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA--NPNLVNKYGDTP 228

Query: 243 AQLASDKNH 251
             +A   N+
Sbjct: 229 LHIAILNNN 237

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 199 RQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
             D  G TPLH AA  G LE    L++ G   DL + D+ GLT   LA
Sbjct: 11  ATDGNGNTPLHLAAKYGALELVQWLLKPG--VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 7/165 (4%)

Query: 31  VVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYI 90
           + D       ++ A    D ++L  L+   G +V+ PD      L  A  +        +
Sbjct: 162 MKDRHKGNTALHYATENKD-QRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL 220

Query: 91  IEHGGDVNAADHTGQTALHWSAVR-GAIQVAELLLREGARVNA-ADMYGYQTTHVAAQYG 148
           +E+G   +A D  G T LH S        + +LLL  G  VNA + + G    H + +  
Sbjct: 221 LENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSE 280

Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA-DCIRLLLF 192
           +   L   + ++ AD +  ++   +PL  A  +    +  R+L+ 
Sbjct: 281 RKLKL---LLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILIS 322

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 206 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           T LH AAI G LE    L++ G   D+  TD  G T   +A++  + +V   L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGV--DINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 92  EHGGDVNAADHTGQTALHWSAVRGAI-QVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
           + G  VN+ D    T LH ++   ++ ++   LL  GA VNA ++ G    ++ A+ G  
Sbjct: 261 DAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYD 320

Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAA-YKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
                 +    AD +  D    +PLH A+      D +  LL L A    +D    TP+H
Sbjct: 321 TENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIH 380

Query: 210 WAAIRGNLEACTVLVQAG 227
           +AA+R N+     L+  G
Sbjct: 381 YAAVRNNVVIINTLLDYG 398

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 142 HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
           H AA  G+   + +++ K   D +  D DG + LH AA  G  + ++LLL
Sbjct: 6   HKAAISGRLELVKYLLEKG-VDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 56  LVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW 110
           L+E     ++  DG G   L  AA        Q++++ G D+N  D  G TAL  
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 117 IQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLH 176
           + +AE+LL  GA VNA D+Y     H AA+ G    +  ++S + AD ++   D  S L 
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLS-YGADVNIIALDDLSVLE 216

Query: 177 WAAYKGFADCIRLLL 191
            A      D I+ ++
Sbjct: 217 CAVDSKNIDTIKAII 231

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           G T LH +A  G ++V +LLL  GA VNA D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 29  GVVVDEESLRND--VYTAAAYG-DLEKLQRLVECEGCSVSEPDGLGYYAL-QWAALNNRT 84
           G  V+ ++++ +  +Y  A  G D E ++ L+   G  V+  D L    L Q + L+   
Sbjct: 297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIM-LGADVNAADRLYITPLHQASTLDRNK 355

Query: 85  AAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVA 144
                ++E G +VNA D+  +T +H++AVR  + +   LL  GA + A         H A
Sbjct: 356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415

Query: 145 AQYGQTAFL-YHIVSKWNADPDVPDNDGRSPLHWAAYKGFA-DCIRLLL 191
              G   ++    +    A+ +  + D  +PLH+A  K    D I +LL
Sbjct: 416 L-CGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLL 463

Length = 682

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 43/205 (20%)

Query: 46  AYGDLEKL-QRLVE---CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           AY  ++ L +R VE     G S +E D  G Y L  A+  N       ++ HG D NA D
Sbjct: 43  AYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACD 102

Query: 102 HTGQTALHWSAVRG--AIQVAELLLREGARV-NAADMYGYQ------------------- 139
              +T L++ +      I+   LL++ GA++ N+ D  G                     
Sbjct: 103 KQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSI 162

Query: 140 --TTHVAAQYGQTAFLYHIVS------------KWNADPDVPDNDGRSPLHWAAYKGF-- 183
                +  ++G+     H++S            K    P  PD+DG +PLH    K    
Sbjct: 163 GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN 222

Query: 184 ADCIRLLLFLDAYRGRQDKEGCTPL 208
            D I LLL       +Q+K G +PL
Sbjct: 223 VDIINLLL-PSTDVNKQNKFGDSPL 246

Length = 446

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 34/108 (31%)

Query: 84  TAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHV 143
              A+ ++  G D N  D+ G+T LH +   G +QV  +LL  G                
Sbjct: 95  AVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG---------------- 138

Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                             ADP + D DG++PL  A   GF + ++LL 
Sbjct: 139 ------------------ADPTLLDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 203 EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           +G TPLH AA  G+LE   +L++AG   D+   D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAG--ADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 89  YIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
           Y++ +G  +N  D  G T LH++      +  + LL  GA  N  + YG    H+A    
Sbjct: 177 YLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNN 236

Query: 149 QTAFLYHIVS 158
                  +++
Sbjct: 237 NKEIFKLLLN 246

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.2 bits (99), Expect = 9e-04
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 187 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
            R+LL   A    +D +G TPLH A   G+++   VL++ G   D  + D  G TP +LA
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA--DPTLLDKDGKTPLELA 155

Query: 247 SDKNHRQVAFFL 258
            +   R+V   L
Sbjct: 156 EENGFREVVQLL 167

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 9/215 (4%)

Query: 38  RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
              ++ AA  G+  K+  L+   G  V+         L+ A  +      + II++  ++
Sbjct: 179 ITPIHYAAERGN-AKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNI 237

Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
           N  D +   A+        ++ + LL   G  VN+ D       H A+Q    + L   +
Sbjct: 238 NKNDLSLLKAIR----NEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKL 293

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGF-ADCIRLLLFLDAYRGRQDKEGCTPLHWAA-IRG 215
            +  AD +  +  G +PL+  A  G+  + IR L+ L A     D+   TPLH A+ +  
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDR 353

Query: 216 NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 250
           N +    L++ G   ++   D    TP   A+ +N
Sbjct: 354 NKDIVITLLELGA--NVNARDYCDKTPIHYAAVRN 386

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 23/50 (46%), Positives = 28/50 (56%)

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWA 211
           ADP+  D DGR+PLH A   G    +R+LL   A     DK+G TPL  A
Sbjct: 106 ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 90  IIEHGG-DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           ++EHG  D+NA D  G T LH +A  GA+++ + LL+ G  +N  D  G
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDG 49

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 45/183 (24%), Positives = 67/183 (36%), Gaps = 26/183 (14%)

Query: 94  GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG-QTAF 152
             D +  D  G+T LH +A +G      +LL+    V+  D  G      A        F
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607

Query: 153 --LYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
             LYH  S   +DP          L  AA +     ++ LL        +D +G T L  
Sbjct: 608 RILYHFASI--SDPHA----AGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV 661

Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCD 270
           A    +++   +L+  G   D   TD+   +P +L                R LL KR  
Sbjct: 662 AMAEDHVDMVRLLIMNGADVDKANTDDD-FSPTEL----------------RELLQKREL 704

Query: 271 GNS 273
           G+S
Sbjct: 705 GHS 707

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 170 DGRSPLHWAAYKGFADCIRLLL 191
           DG +PLH AA  G  + ++LLL
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 60  EGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTAL 108
            G S++  +  G   L +AA+ N   A + +I  G D+NA    G T L
Sbjct: 246 AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY 136
           AA  N   A + +++ G +V++ DH G TAL  +     + +  LL+  GA V+ A+  
Sbjct: 629 AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD 687

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 87  AQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
           A+ ++E G DVNA D    T +H++A RG  ++  LLL  GA VN
Sbjct: 161 AEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN 205

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	634
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG1314	414	consensus DHHC-type Zn-finger protein [General fun	100.0
KOG1311	299	consensus DHHC-type Zn-finger proteins [General fu	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG1315	307	consensus Predicted DHHC-type Zn-finger protein [G	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	99.98
KOG1313	309	consensus DHHC-type Zn-finger proteins [General fu	99.98
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG1312	341	consensus DHHC-type Zn-finger proteins [General fu	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
PHA02792	631	ankyrin-like protein; Provisional	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.8
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.77
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.24
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.96
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.75
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.68
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.66
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.64
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.59
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.58
PF13606	30	Ank_3: Ankyrin repeat	98.55
PF13606	30	Ank_3: Ankyrin repeat	98.54
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.48
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.47
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.45
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.4
KOG0522	560	consensus Ankyrin repeat protein [General function	98.26
KOG0522	560	consensus Ankyrin repeat protein [General function	98.24
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.15
KOG0511	516	consensus Ankyrin repeat protein [General function	98.04
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.0
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.97
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.91
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.89
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.87
KOG2384	223	consensus Major histocompatibility complex protein	97.84
KOG0511	516	consensus Ankyrin repeat protein [General function	97.84
KOG2384	223	consensus Major histocompatibility complex protein	97.73
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	96.71
KOG2505	591	consensus Ankyrin repeat protein [General function	96.24
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.22
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.17
KOG2505	591	consensus Ankyrin repeat protein [General function	95.34
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.26
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.78
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.54
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	91.68
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	88.95
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.47
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.29

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=5.4e-75  Score=609.42  Aligned_cols=501  Identities=36%  Similarity=0.559  Sum_probs=352.2

Q ss_pred             CCCcchhhhhccccccCCCCCCCCCCCCCCcccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHH
Q 006702            1 MSSEIEVVEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAAL   80 (634)
Q Consensus         1 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~   80 (634)
                      |+.++|+.+....    ........++.....+++.....++.|++.|+++.|+.|++.++.+++.+|.+|.|+|||||.
T Consensus        12 ~~~~~e~~~~~~~----~~~~~~~~~~~~~~~e~d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAi   87 (600)
T KOG0509|consen   12 LSHEIEVVPLIMF----HLSPGVEGESSNLSFEEDSSLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAI   87 (600)
T ss_pred             CCCCCcccccccc----ccCcccCCCCcccccccchhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHH
Confidence            5666666666511    111122222333345788889999999999999999999997699999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHc
Q 006702           81 NNRTAAAQYIIEHGGDVNAAD-HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK  159 (634)
Q Consensus        81 ~g~~~~v~~Ll~~gad~n~~~-~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~  159 (634)
                      +++.+++|+|+++|+|+|..+ .-+.||||||+++|+..+|++|+++|||++.+|.+|.+|+|+|++.|+..++.|||.+
T Consensus        88 NNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~  167 (600)
T KOG0509|consen   88 NNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK  167 (600)
T ss_pred             cCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh
Confidence            999999999999999999998 5789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCC
Q 006702          160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT  238 (634)
Q Consensus       160 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~  238 (634)
                       ++++|.+|.+|+||||||+++|+...++.|++.|+.+...| .+|+||||||+..||.+++++|++.|  .+.+.+|.+
T Consensus       168 -~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~--~~~d~~~~~  244 (600)
T KOG0509|consen  168 -GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGG--ADLDKTNTN  244 (600)
T ss_pred             -cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcC--CcccccccC
Confidence             79999999999999999999999988999999999999888 89999999999999999999666666  566788888


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHH-HHHHhcccCCCCCCcccccccCcchhHHHHHHHHHHHHHHh----------------
Q 006702          239 GLTPAQLASDKNHRQVAFFLGN-ARRLLDKRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHS----------------  301 (634)
Q Consensus       239 g~Tpl~~A~~~~~~~i~~~L~~-~~~l~~~~~~~~~~~~~~~~~g~~~l~~~~i~~~l~~y~~~----------------  301 (634)
                      |+||+++|.++.   ++..+.. ......+..+....     ........+.+  +++..|+..                
T Consensus       245 g~tp~~LA~~~~---~~~~~~h~~~~~~~~~~~K~~~-----~~~~~~~~~f~--~~~~~~~~~~~~~g~i~~~~~~w~i  314 (600)
T KOG0509|consen  245 GKTPFDLAQERK---LVAALHHDVVERLGKVVKKWFL-----GSKLAALIFFI--FLGLFYFISSWLPGVIFLINSLWLI  314 (600)
T ss_pred             CCCHHHHHHHhh---hHHHhhccHHHhhcccccchhh-----hhHHHHHHHHH--HHHHHHHHHhhccchhhhhhhHHHH
Confidence            999999998872   2222211 11111111000000     00111111111  111110000                


Q ss_pred             ---hhhhcc---------------CCccchhh--HHH-----HHH--------------HHHHHHHHHHHHHhhhccCCC
Q 006702          302 ---VIMASN---------------LPKLTAGF--GLL-----AWS--------------GVFLATGGLVLFYRCSRKDPG  342 (634)
Q Consensus       302 ---~i~~~~---------------~~~~~~~~--~~~-----~w~--------------~i~l~~~~l~~~~~~~~~dPG  342 (634)
                         .+...+               .+....+.  ..+     .|+              .++..+..++.|.+...+|||
T Consensus       315 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~~i~~~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg  394 (600)
T KOG0509|consen  315 KGLALGKLVLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFSKITPYTLFDFHYCFIISVLAYFITFGLFLRSDPG  394 (600)
T ss_pred             hhhhhhhhhhheeccchhhccccccchhHHHHHHHHHHHHHHhhheeccchhhhhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence               000000               00000000  011     111              112233445677788889999


Q ss_pred             ccccCCCCCCCCCCchhhhhhhccCcchhccccc-ccccccccccCCCCCCCCcchhhhhccCCcCccccccccCCChHH
Q 006702          343 YIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWS-QLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWD  421 (634)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~C~~~kP~Rs~HC~~C~~CV~rfDHHCpwv~ncIG~~N~r~  421 (634)
                      ++|......     .+......    +..+.+.+ ++|.+|.++||.|||||++|||||.||||||||++||||.+|||+
T Consensus       395 ~i~~~~~~~-----~~tIs~l~----d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~  465 (600)
T KOG0509|consen  395 FIPTSTEVG-----RETISQLI----DFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRL  465 (600)
T ss_pred             CCCCchhhH-----HHHHHHhh----ccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHH
Confidence            998764322     11111110    11122234 699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhccccchhhHHHHHHHH-------H------HHHHHH-HHH
Q 006702          422 FFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFS-------L------FFGVAV-LTA  487 (634)
Q Consensus       422 F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~-l~~  487 (634)
                      |+.|+++....+.++.+.+.+.+...... ..  .|.       ...+.+.++...       +      ..+... .-+
T Consensus       466 F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~-~~--~~~-------~~l~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~  535 (600)
T KOG0509|consen  466 FVFFLLTLLTVIVFYLYLCLYYIMNLENA-ST--IYV-------GFLIAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKC  535 (600)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchh-HH--HHH-------HHHHHHHHHhCCccceeeeeeccccccccccccccc
Confidence            99999887666655555554433221110 00  000       000000011000       0      011122 223


Q ss_pred             HHHHHHhhcchhHHHHhhhhhhhhcCCCCCccCCCCHhHHhHHHHhcccC
Q 006702          488 VQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLING  537 (634)
Q Consensus       488 ~~~~~i~~n~TT~E~~~~~r~~y~~~~~~~~~npyd~G~~~N~~~f~~~~  537 (634)
                      .|...++.++||+|+++..||++++...+..++|++.|+.+|+.+||-..
T Consensus       536 ~~~~~~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g~~~Nl~df~~~~  585 (600)
T KOG0509|consen  536 QHYNCACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPGPIRNLVDFFLCS  585 (600)
T ss_pred             cccceeeecccHHHHHHHHHhhccccccCcCCCCCCchhhhcchheeecc
Confidence            44456789999999999999999988888889999999999999999544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.7e-42  Score=362.97  Aligned_cols=519  Identities=23%  Similarity=0.201  Sum_probs=369.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccc-cCCChHHHHHHHhC
Q 006702           71 GYYALQWAALNNRTAAAQYIIEH-GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD-MYGYQTTHVAAQYG  148 (634)
Q Consensus        71 g~t~Lh~Aa~~g~~~~v~~Ll~~-gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~t~L~~Aa~~g  148 (634)
                      -.+.+..|++.|.++.|+.|++. |.+++..|.+|.|+|||||.+++++++++|+++|||+|..+ ..+.||||.|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            35678899999999999999998 99999999999999999999999999999999999999998 78899999999999


Q ss_pred             CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 006702          149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK  228 (634)
Q Consensus       149 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~  228 (634)
                      +..+++.|+++ |+|++.+|.+|.||||.|+..|+.-.|-+|+.+|+|+|.+|.+|+||||||+.+|....++.||+.| 
T Consensus       124 ~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~-  201 (600)
T KOG0509|consen  124 HISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFG-  201 (600)
T ss_pred             cHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhc-
Confidence            99999999988 9999999999999999999999999999999999999999999999999999999988899999999 


Q ss_pred             CCCccccC-CCCCCHHHHHHhcCcHHHHHHHHHHHHHhc-ccCCCCCCcccccccCcchhHHHHHHHHHHHHHHhhh--h
Q 006702          229 KEDLMVTD-NTGLTPAQLASDKNHRQVAFFLGNARRLLD-KRCDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVI--M  304 (634)
Q Consensus       229 ~~d~~~~d-~~g~Tpl~~A~~~~~~~i~~~L~~~~~l~~-~~~~~~~~~~~~~~~g~~~l~~~~i~~~l~~y~~~~i--~  304 (634)
                       +.+..+| ++|.||||+|+..|+..++.+|.+++.-.+ .+.+|.+|+..+.+.      +..     ....+...  .
T Consensus       202 -a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~------~~~-----~~~~h~~~~~~  269 (600)
T KOG0509|consen  202 -ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER------KLV-----AALHHDVVERL  269 (600)
T ss_pred             -ccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh------hhH-----HHhhccHHHhh
Confidence             5666777 999999999999999999986666544333 223345555554443      111     00001000  0


Q ss_pred             hccCCccchhhHHHHHHHHHHHHHHHHHHHhhhccCCCccccCCCCCCCCCCchhhhhhhccCcchhccccccccccccc
Q 006702          305 ASNLPKLTAGFGLLAWSGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKI  384 (634)
Q Consensus       305 ~~~~~~~~~~~~~~~w~~i~l~~~~l~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~  384 (634)
                      ....++.........|+...    .++.++.++..+||++..... .           ...+...+........|.+|.+
T Consensus       270 ~~~~~K~~~~~~~~~~~~f~----~~~~~~~~~~~~~g~i~~~~~-~-----------w~i~~~~L~~~~~~~~~~~~~~  333 (600)
T KOG0509|consen  270 GKVVKKWFLGSKLAALIFFI----FLGLFYFISSWLPGVIFLINS-L-----------WLIKGLALGKLVLTCLCATRKI  333 (600)
T ss_pred             cccccchhhhhHHHHHHHHH----HHHHHHHHHhhccchhhhhhh-H-----------HHHhhhhhhhhhhheeccchhh
Confidence            01111222222222222221    455667788899999864421 1           1112233444556789999999


Q ss_pred             ccCCCCCCCCcchhhhhccCCcCccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhccc
Q 006702          385 VRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTH  464 (634)
Q Consensus       385 ~kP~Rs~HC~~C~~CV~rfDHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (634)
                      ..+.+-.+|..|-.|+..|++||+|+. ||+.+|-..|.++.+...+.+++.++..+.   ++|......+.+.......
T Consensus       334 ~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~~~f~~~~r---sDPg~i~~~~~~~~~tIs~  409 (600)
T KOG0509|consen  334 VGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYFITFGLFLR---SDPGFIPTSTEVGRETISQ  409 (600)
T ss_pred             ccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHHHHHHHHhc---cCCCCCCCchhhHHHHHHH
Confidence            999999999999999999999999999 999999887766555555555444444332   4443333333322111110


Q ss_pred             cchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhhhcCCCCCccCCCCHhHHhHHHHhcccCCccccc
Q 006702          465 HIGALSFLIA-DFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVE  543 (634)
Q Consensus       465 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~i~~n~TT~E~~~~~r~~y~~~~~~~~~npyd~G~~~N~~~f~~~~~~~~~~  543 (634)
                      .+-...+..- -++...++--.+..+--.+++.-++.+...--.+.+..++++....+|......++..|+......+..
T Consensus       410 l~d~gkf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~  489 (600)
T KOG0509|consen  410 LIDFGKFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIM  489 (600)
T ss_pred             hhccccccccccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0000000111 012222222233445556777777777655555566778888888999999999999998777665555


Q ss_pred             cccc--cCCCccccccccccccccCCCCCccccCCCCCceeeecCCCCCCCcCcccccCCCCCCCCCCCCCCCccccccc
Q 006702          544 CVED--SAGTEGIGMMHMSRNSNLQNGDGHIHHANGNGHVAINVNSNNTNSHHGHLHSSHCNHSNHGKSKTDSVPLGLGL  621 (634)
Q Consensus       544 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (634)
                      ..+.  ..-++++.+||+.|.....+         |+.|+.+|++.+.. +-+-+.++--|++.+-.+...+..+.+.++
T Consensus       490 ~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~n~~~~~t~~-~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~  559 (600)
T KOG0509|consen  490 NLENASTIYVGFLIAVQAFRIPKPVT---------GNLLGNEDLNPTWG-STSTKCQHYNCACLHLTTNEQINVKRYEHL  559 (600)
T ss_pred             hcchhHHHHHHHHHHHHHHhCCccce---------eeeeeccccccccc-cccccccccceeeecccHHHHHHHHHhhcc
Confidence            5554  24677888999988876665         78888888887622 222222221133333344456777889999


Q ss_pred             ccCCCCCccccC
Q 006702          622 GLGRSSARSVVA  633 (634)
Q Consensus       622 ~~~~~~~~~~~~  633 (634)
                      |.-|+++|+.++
T Consensus       560 ~~~~~~~~~~~s  571 (600)
T KOG0509|consen  560 GIKRGPTRSPFS  571 (600)
T ss_pred             ccccCcCCCCCC
Confidence            999998887664

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-36  Score=269.39  Aligned_cols=207  Identities=29%  Similarity=0.361  Sum_probs=191.5

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCC-CCchHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHhC
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDG-LGYYALQWAALNNRTAAAQYII-EHGGDVNAADHTGQTALHWSAVRG  115 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~Aa~~g~~~~v~~Ll-~~gad~n~~~~~g~tpLh~A~~~g  115 (634)
                      .++.+.+++.....-++.++++..-.++.++. +|+|||||||..|+.+++++|+ +.+..+|.+|..|+||||.||..|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            45667788888888999999976656776655 9999999999999999999999 567889999999999999999999


Q ss_pred             CHHHHHHHHhc-CCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC
Q 006702          116 AIQVAELLLRE-GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD  194 (634)
Q Consensus       116 ~~~iv~~Ll~~-gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  194 (634)
                      +.++|+.|+.+ |+|+++.+..|.|+||+|+..|+.+++++|+++ |+.++.+|..|.||||-|+..|..+++++|+..|
T Consensus        84 ~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~-ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK-GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             cHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc-CCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            99999999998 999999999999999999999999999999998 8999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHh
Q 006702          195 AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD  248 (634)
Q Consensus       195 a~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~  248 (634)
                      +.+|.+|+.|+||||.|...|+.++..+|+++|  +++...|++| ||+..|+-
T Consensus       163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g--Ad~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG--ADTDREDKEG-TALRIACN  213 (226)
T ss_pred             CCCCcccccCccHHHHHHhccCchHHHHHHHhc--cceeeccccC-chHHHHHH
Confidence            999999999999999999999999999999999  6777899988 99887753

>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=1.7e-36  Score=295.32  Aligned_cols=192  Identities=26%  Similarity=0.491  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHhhhccCCCccccCCCCCCCCCCchhhhhhhccCcchhcccccccccccccccCCCCCCCCcchhhhhcc
Q 006702          324 FLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQF  403 (634)
Q Consensus       324 ~l~~~~l~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~rf  403 (634)
                      +...+.++.|+.+++++||++|+.+..+.. ++ +               .+.|+|..|+.+|+||||||+.|||||.+|
T Consensus        56 ~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~-~D-~---------------~~lqfCk~CqgYKapRSHHCrkCnrCvmkM  118 (414)
T KOG1314|consen   56 LWTSMILYNYFNAIFTGPGFVPLGWKPENP-KD-E---------------MFLQFCKKCQGYKAPRSHHCRKCNRCVMKM  118 (414)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCCCC-hh-H---------------HHHHHHhhccCcCCCccccchHHHHHHHhh
Confidence            445667899999999999999998864321 11 1               124899999999999999999999999999


Q ss_pred             CCcCccccccccCCChHHHHHHHHHHHHHHHHHHHHHH-------HHhh--c--CCCCCCCchhhhhhhccccchhhHHH
Q 006702          404 DHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTV-------IRVF--T--DPVAPSSFGAWMSYASTHHIGALSFL  472 (634)
Q Consensus       404 DHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~-------~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (634)
                      ||||||+|||||..||.+|+.||++..+.++-..++.+       +.-+  .  ....+..+   +  .....+..++.+
T Consensus       119 DHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~~hlp~v~---f--t~~~li~~vfsl  193 (414)
T KOG1314|consen  119 DHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGLRHLPIVF---F--TLSSLIALVFSL  193 (414)
T ss_pred             ccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhcccccCceee---c--cHHHHHHHHHHh
Confidence            99999999999999999999999998885543221111       1111  1  11111100   0  000111112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHh----hhhhh-hhcCCCCCccCCCCHhHHhHHHHhcccC
Q 006702          473 IADFSLFFGVAVLTAVQASQISRNITTNEMAN----ALRYN-YLRGAGGRFRNPYDHGCKRNCSDFLING  537 (634)
Q Consensus       473 ~~~~~~~~~~~~l~~~~~~~i~~n~TT~E~~~----~~r~~-y~~~~~~~~~npyd~G~~~N~~~f~~~~  537 (634)
                      -+.+...+.+++|++.|+.+|.+|+|.+|.+-    ..|.. |..+..+++..|||.|.+.|++++|+..
T Consensus       194 gla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf~~~  263 (414)
T KOG1314|consen  194 GLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVFFQN  263 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHhhhc
Confidence            23344456678899999999999999999776    34443 4445568899999999888999998755

>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=100.00  E-value=6.5e-36  Score=308.24  Aligned_cols=155  Identities=26%  Similarity=0.475  Sum_probs=116.7

Q ss_pred             cccccccccccCCCCCCCCcchhhhhccCCcCccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCch
Q 006702          376 SQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFG  455 (634)
Q Consensus       376 ~~~C~~C~~~kP~Rs~HC~~C~~CV~rfDHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (634)
                      .++|.+|+.+||+|||||++||+||+||||||||+|||||++|||+|+.|+++..+++++..++.++.+.........  
T Consensus       113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~--  190 (299)
T KOG1311|consen  113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKV--  190 (299)
T ss_pred             eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--
Confidence            599999999999999999999999999999999999999999999999999988888877776666554332111000  


Q ss_pred             hhhh-hhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhhhcCCCCCc-cCCCCHhHHhHHHHh
Q 006702          456 AWMS-YASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRF-RNPYDHGCKRNCSDF  533 (634)
Q Consensus       456 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~TT~E~~~~~r~~y~~~~~~~~-~npyd~G~~~N~~~f  533 (634)
                      .|.. .........+++.++++++.+.++.|+.+|+++|.+|+||+|.++.  +++      +. .+|||+|.++|+.+.
T Consensus       191 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~--~~~------~~~~~~~~~g~~~n~~~~  262 (299)
T KOG1311|consen  191 NLTPVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS--LDF------VSRSNPYDLGLLKNLQEV  262 (299)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc--ccc------ccccCCCchhHHHHHHHH
Confidence            0100 0001111223333456666777788999999999999999997765  221      12 499999999999999


Q ss_pred             cccCCcc
Q 006702          534 LINGFNE  540 (634)
Q Consensus       534 ~~~~~~~  540 (634)
                      |+.+.+.
T Consensus       263 ~~~~~~~  269 (299)
T KOG1311|consen  263 FGGPLPL  269 (299)
T ss_pred             hCCCCCc
Confidence            9988665

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.2e-35  Score=295.56  Aligned_cols=217  Identities=17%  Similarity=0.161  Sum_probs=196.3

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      ..+..+.||||.|+..|+.++++.|++ .|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~-~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~A  101 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLN-AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA  101 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHH-CcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            357789999999999999999999998 788887764  68999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCC-hHHHHHHHhCCHHHHHHHHHccCCCCCCCC-CCCChHHHHHHhcCCHHHHHH
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGY-QTTHVAAQYGQTAFLYHIVSKWNADPDVPD-NDGRSPLHWAAYKGFADCIRL  189 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~-t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~  189 (634)
                      +..|+.+++++|+++|++++.++..|. ||||+|+..|+.+++++|+++ +.+  ..| ..|.||||+|+..|+.+++++
T Consensus       102 a~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~-~~~--~~d~~~g~TpLh~Aa~~g~~eiv~l  178 (284)
T PHA02791        102 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPS--TFDLAILLSCIHITIKNGHVDMMIL  178 (284)
T ss_pred             HHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc-CCc--ccccccCccHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999885 899999999999999999987 332  223 358999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH
Q 006702          190 LLFLDAYRGRQDKEGCTP-LHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR  263 (634)
Q Consensus       190 Ll~~ga~~~~~d~~g~Tp-Lh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~  263 (634)
                      |+++|++++.+|..|.|| ||+|+..|+.++|++|+++|  ++++.+|.+| +++      ++.|++++|.+...
T Consensus       179 LL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G--a~in~~~~~~-~~l------~~~e~~~~ll~~~~  244 (284)
T PHA02791        179 LLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD--INIYSVNLEN-VLL------DDAEIAKMIIEKHV  244 (284)
T ss_pred             HHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC--CCCccCcccC-ccC------CCHHHHHHHHHhhh
Confidence            999999999999999987 99999999999999999999  6788999855 555      78899999876543

>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=6.5e-36  Score=298.49  Aligned_cols=213  Identities=23%  Similarity=0.304  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHhhhccCCCccccCCCCCCCCCCch-hhhhhhccCcc--hhcccccccccccccccCCCCCCCCcch
Q 006702          321 SGVFLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDE-PLLKIEMNNPA--LLAGNWSQLCATCKIVRPLRAKHCSTCD  397 (634)
Q Consensus       321 ~~i~l~~~~l~~~~~~~~~dPG~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~C~~C~~~kP~Rs~HC~~C~  397 (634)
                      .+.++.++.++.+++++++|||.+|.....+.++++.. .....+.+.+.  .......++|.+|+.+||+|||||++|+
T Consensus        51 ~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~  130 (307)
T KOG1315|consen   51 LFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGSDNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCN  130 (307)
T ss_pred             HHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccCcccccceeeEecCCCCceeecccccccCCccccchhhh
Confidence            34456777889999999999999987664433222110 00011111111  1122347999999999999999999999


Q ss_pred             hhhhccCCcCccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhccccchhhHHHHHHHH
Q 006702          398 RCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFS  477 (634)
Q Consensus       398 ~CV~rfDHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (634)
                      |||++|||||||+|||||.+|||+|++|++++.+.+++..+..+..+..........      ........++.+++.+.
T Consensus       131 rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  204 (307)
T KOG1315|consen  131 RCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQGGAGP------SSLLLFFIVFLFLVAIA  204 (307)
T ss_pred             hhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC------chhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988666555443322211000000      01112223334445555


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhhhcCCCCCccCCCCHhHHhHHHHhcccCCccccccccc
Q 006702          478 LFFGVAVLTAVQASQISRNITTNEMANALRYNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVECVED  547 (634)
Q Consensus       478 ~~~~~~~l~~~~~~~i~~n~TT~E~~~~~r~~y~~~~~~~~~npyd~G~~~N~~~f~~~~~~~~~~~~~~  547 (634)
                      +.+.+..|+++|+++|++|+||+|..+...+..    ++...|.|+.  ..|+.++|+.+.  -.|.+|.
T Consensus       205 f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~----~~~~~~~~~~--~~n~~~vfg~~~--~~wl~P~  266 (307)
T KOG1315|consen  205 FSISLSGLLCFHTYLILKNKTTIEAYKSPVFRS----GLHNKNGFNL--YVNFREVFGSNL--LYWLLPI  266 (307)
T ss_pred             HHHHHHHHHHHHHHHHHcCchhHhhhccccccc----cccccCCcce--eecHHHHhCCCc--eEEeccc
Confidence            666677799999999999999999776542221    2233577777  899999997663  4444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-34  Score=312.22  Aligned_cols=224  Identities=26%  Similarity=0.312  Sum_probs=204.1

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCC----------------
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG----------------   95 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga----------------   95 (634)
                      ..++.+.+||+.|++.|+.+++++|++ .|++++..+..|.||||.|+..|+.+++++|+++|+                
T Consensus        30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll~-~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~  108 (434)
T PHA02874         30 ISVDETTTPLIDAIRSGDAKIVELFIK-HGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIK  108 (434)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHH
Confidence            345668899999999999999999998 899999999999999999999999999999988764                


Q ss_pred             -------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCC
Q 006702           96 -------DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD  168 (634)
Q Consensus        96 -------d~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d  168 (634)
                             +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++. |++++..|
T Consensus       109 ~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-g~~~n~~~  187 (434)
T PHA02874        109 TILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK-GAYANVKD  187 (434)
T ss_pred             HHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCC
Confidence                   4667888999999999999999999999999999999999999999999999999999999988 99999999


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHh
Q 006702          169 NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD  248 (634)
Q Consensus       169 ~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~  248 (634)
                      ..|.||||+|+..|+.+++++|++.|++++.++..|.||||.|+..+. +++++|+ .|  .+++.+|..|.||||+|+.
T Consensus       188 ~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~--~~in~~d~~G~TpLh~A~~  263 (434)
T PHA02874        188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NN--ASINDQDIDGSTPLHHAIN  263 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cC--CCCCCcCCCCCCHHHHHHh
Confidence            999999999999999999999999999999999999999999998765 6677776 45  5788999999999999998


Q ss_pred             cC-cHHHHHHHHHH
Q 006702          249 KN-HRQVAFFLGNA  261 (634)
Q Consensus       249 ~~-~~~i~~~L~~~  261 (634)
                      .+ +.+++++|.+.
T Consensus       264 ~~~~~~iv~~Ll~~  277 (434)
T PHA02874        264 PPCDIDIIDILLYH  277 (434)
T ss_pred             cCCcHHHHHHHHHC
Confidence            75 78899988654

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=3.1e-36  Score=286.73  Aligned_cols=171  Identities=30%  Similarity=0.535  Sum_probs=118.9

Q ss_pred             HHHHhhhccCCCccccCCCCCCCCCCc-hhhhhhhccCcchhcccccccccccccccCCCCCCCCcchhhhhccCCcCcc
Q 006702          331 VLFYRCSRKDPGYIRMNVHDPQNMKDD-EPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPW  409 (634)
Q Consensus       331 ~~~~~~~~~dPG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~rfDHHCpw  409 (634)
                      ++|+++..+|||++|+...+....... +..........+....+..++|.+|+.+||+|||||+.|++||.||||||||
T Consensus         2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w   81 (174)
T PF01529_consen    2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW   81 (174)
T ss_pred             EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence            457889999999999872211111111 1111111111122244557999999999999999999999999999999999


Q ss_pred             ccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 006702          410 VSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQ  489 (634)
Q Consensus       410 v~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  489 (634)
                      +|||||++|||+|++|+++..+.+++.....+..+............+    .......+++++++++++++++.++++|
T Consensus        82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~  157 (174)
T PF01529_consen   82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFW----IFSNFSSIFLLIISIFFFIFVGFLLIFQ  157 (174)
T ss_pred             hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc----cchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888777766655444322111111000    0001112455556677778889999999


Q ss_pred             HHHHhhcchhHHHHhh
Q 006702          490 ASQISRNITTNEMANA  505 (634)
Q Consensus       490 ~~~i~~n~TT~E~~~~  505 (634)
                      +++|++|+||+|.+|+
T Consensus       158 ~~~i~~n~Tt~E~~~~  173 (174)
T PF01529_consen  158 LYLILRNITTYERIKR  173 (174)
T ss_pred             HHHHHcCCcHHHHHHc
Confidence            9999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=319.04  Aligned_cols=248  Identities=24%  Similarity=0.300  Sum_probs=224.9

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHH-----HHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQW-----AALNNRTAAAQYIIEHGGDVNAADHTGQT  106 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~-----Aa~~g~~~~v~~Ll~~gad~n~~~~~g~t  106 (634)
                      ..+..+.+|||.|++.|+.++++.|++ .|++++..+..+.||||+     |+..++.+++++|+++|++++..+..|.|
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll~-~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t  108 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDVVKILLD-NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT  108 (480)
T ss_pred             hhhcccchhhhhhhccCCHHHHHHHHH-cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCc
Confidence            346678899999999999999999998 799999999999999999     99999999999999999999999999999


Q ss_pred             HHHHHH--HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhC--CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcC
Q 006702          107 ALHWSA--VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG--QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG  182 (634)
Q Consensus       107 pLh~A~--~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  182 (634)
                      |||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+  +.+++++|++. |++++.+|..|.||||+|+..|
T Consensus       109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tpL~~A~~~~  187 (480)
T PHA03100        109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTPLHIAVEKG  187 (480)
T ss_pred             hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCHHHHHHHhC
Confidence            999999  999999999999999999999999999999999999  99999999988 9999999999999999999999


Q ss_pred             CHHHHHHHhhcCCCCCCCCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHH
Q 006702          183 FADCIRLLLFLDAYRGRQDKEG------CTPLHWAAIRGN--LEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV  254 (634)
Q Consensus       183 ~~~~v~~Ll~~ga~~~~~d~~g------~TpLh~A~~~g~--~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i  254 (634)
                      +.+++++|++.|++++..+..|      .||||+|+..|+  .+++++|+++|  ++++.+|..|.||||+|+..++.++
T Consensus       188 ~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g--~din~~d~~g~TpL~~A~~~~~~~i  265 (480)
T PHA03100        188 NIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG--VPINIKDVYGFTPLHYAVYNNNPEF  265 (480)
T ss_pred             CHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999      899999999999  99999999999  6788999999999999999999999


Q ss_pred             HHHHHHHHH-HhcccCCCCCCcccccccCc
Q 006702          255 AFFLGNARR-LLDKRCDGNSPIGKISKLGL  283 (634)
Q Consensus       255 ~~~L~~~~~-l~~~~~~~~~~~~~~~~~g~  283 (634)
                      +++|.+.+. ....+..+.+|+..+...+.
T Consensus       266 v~~Ll~~gad~n~~d~~g~tpl~~A~~~~~  295 (480)
T PHA03100        266 VKYLLDLGANPNLVNKYGDTPLHIAILNNN  295 (480)
T ss_pred             HHHHHHcCCCCCccCCCCCcHHHHHHHhCC
Confidence            999865443 22233334444444444333

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.6e-34  Score=309.95  Aligned_cols=190  Identities=18%  Similarity=0.239  Sum_probs=93.2

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCCC-CCCCCCcHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN--RTAAAQYIIEHGGDVNA-ADHTGQTALHW  110 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g--~~~~v~~Ll~~gad~n~-~~~~g~tpLh~  110 (634)
                      +..+.||||.|++.|+.++++.|++ .|++++.+|..|.||||+|+..+  ..+++++|+++|+++|. .|..|.|||| 
T Consensus        69 d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-  146 (446)
T PHA02946         69 DDDGNYPLHIASKINNNRIVAMLLT-HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-  146 (446)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-
Confidence            3444555555555555555555554 44555555555555555554433  24445555555555543 3444555554 


Q ss_pred             HHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC--HHHHHHHHHccCCCCCCCCCCCChHHHHHHhcC--CHHH
Q 006702          111 SAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ--TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG--FADC  186 (634)
Q Consensus       111 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~  186 (634)
                      |+..|+.+++++|+++|++++.+|..|.||||.|+..++  .+++++|++. |++++.+|.+|.||||+|+..+  +.++
T Consensus       147 aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~~~~~~i  225 (446)
T PHA02946        147 ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL-GISPSKPDHDGNTPLHIVCSKTVKNVDI  225 (446)
T ss_pred             HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCCcHHH
Confidence            333445555555555555555555555555555444322  3444444444 5555555555555555555443  3445


Q ss_pred             HHHHhhcCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHHcC
Q 006702          187 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGN-LEACTVLVQAG  227 (634)
Q Consensus       187 v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~-~~iv~~Ll~~g  227 (634)
                      +++|++ |++++.+|..|.||||+|+..++ .+++++|+++|
T Consensus       226 v~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g  266 (446)
T PHA02946        226 INLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTS  266 (446)
T ss_pred             HHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCC
Confidence            554442 45555555555555555555444 24455555444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-35  Score=263.38  Aligned_cols=185  Identities=31%  Similarity=0.428  Sum_probs=176.4

Q ss_pred             CCCCcccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCC
Q 006702           27 SNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEH-GGDVNAADHTGQ  105 (634)
Q Consensus        27 ~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~-gad~n~~~~~g~  105 (634)
                      .+....+|+++++|||+|+..|+.+++++|+++.+..+|.+|..|+||||+||..|+.++|+.|+.+ |+|+|..+..|.
T Consensus        28 kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~  107 (226)
T KOG4412|consen   28 KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQ  107 (226)
T ss_pred             hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCc
Confidence            3444567779999999999999999999999888999999999999999999999999999999998 999999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHH
Q 006702          106 TALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFAD  185 (634)
Q Consensus       106 tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  185 (634)
                      |+||+|+..|..+|+++|+++|+.++.+|+.|.||||-|+.-|+.+++++|+.. ++.+|.+|+.|.||||.|...|+.+
T Consensus       108 T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~-~a~~n~qDk~G~TpL~~al~e~~~d  186 (226)
T KOG4412|consen  108 TCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ-GAPLNTQDKYGFTPLHHALAEGHPD  186 (226)
T ss_pred             ceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc-CCCCCcccccCccHHHHHHhccCch
Confidence            999999999999999999999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCCcHHHHHHH
Q 006702          186 CIRLLLFLDAYRGRQDKEGCTPLHWAAI  213 (634)
Q Consensus       186 ~v~~Ll~~ga~~~~~d~~g~TpLh~A~~  213 (634)
                      +..+|++.|++.+..|++| ||+..|+-
T Consensus       187 ~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  187 VAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHHHHHHhccceeeccccC-chHHHHHH
Confidence            9999999999999999999 99887763

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.6e-34  Score=309.25  Aligned_cols=218  Identities=26%  Similarity=0.344  Sum_probs=203.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHH
Q 006702           39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ  118 (634)
Q Consensus        39 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~  118 (634)
                      ..|..|+..|+++.++.|++..+..++..+..|.||||.|+..|+.++|++|+++|+++|..+..|.||||.|+..|+.+
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~   82 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD   82 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            47899999999999999999778888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCC-----------------------CCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHH
Q 006702          119 VAELLLREGA-----------------------RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPL  175 (634)
Q Consensus       119 iv~~Ll~~ga-----------------------d~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  175 (634)
                      ++++|+++|+                       +++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.|||
T Consensus        83 iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-gad~n~~d~~g~tpL  161 (434)
T PHA02874         83 IIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPI  161 (434)
T ss_pred             HHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC-CCCCCCcCCCCCCHH
Confidence            9999988765                       4667889999999999999999999999987 999999999999999


Q ss_pred             HHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHH
Q 006702          176 HWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA  255 (634)
Q Consensus       176 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~  255 (634)
                      |+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|  ++++.++..|.||||.|+..+. +++
T Consensus       162 h~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g--~~i~~~~~~g~TpL~~A~~~~~-~~i  238 (434)
T PHA02874        162 HIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG--NHIMNKCKNGFTPLHNAIIHNR-SAI  238 (434)
T ss_pred             HHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCcCCCCCCCCHHHHHHHCCh-HHH
Confidence            9999999999999999999999999999999999999999999999999999  5678899999999999999876 455


Q ss_pred             HHHHH
Q 006702          256 FFLGN  260 (634)
Q Consensus       256 ~~L~~  260 (634)
                      ++|..
T Consensus       239 ~~Ll~  243 (434)
T PHA02874        239 ELLIN  243 (434)
T ss_pred             HHHHc
Confidence            55543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.9e-34  Score=307.71  Aligned_cols=219  Identities=22%  Similarity=0.271  Sum_probs=198.2

Q ss_pred             hhhHHHHHH--HcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           37 LRNDVYTAA--AYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        37 ~~~~L~~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      ..+.||.++  ..++.++++.|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~-~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLH-RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHH-CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            367888765  4457899999998 8999999999999999999999999999999999999999999999999999887


Q ss_pred             C--CHHHHHHHHhcCCCCCc-cccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC--HHHHHH
Q 006702          115 G--AIQVAELLLREGARVNA-ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF--ADCIRL  189 (634)
Q Consensus       115 g--~~~iv~~Ll~~gad~~~-~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~--~~~v~~  189 (634)
                      +  ..+++++|+++|++++. .|..|.|||| |+..++.++++.|++. |++++.+|..|.||||+|+..++  .+++++
T Consensus       116 ~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~  193 (446)
T PHA02946        116 DDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI-GFEARIVDKFGKNHIHRHLMSDNPKASTISW  193 (446)
T ss_pred             CCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc-cccccccCCCCCCHHHHHHHhcCCCHHHHHH
Confidence            6  48999999999999995 6899999997 6777999999999987 99999999999999999987654  689999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCc-HHHHHHHHHH
Q 006702          190 LLFLDAYRGRQDKEGCTPLHWAAIRG--NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH-RQVAFFLGNA  261 (634)
Q Consensus       190 Ll~~ga~~~~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~-~~i~~~L~~~  261 (634)
                      |++.|++++.+|.+|.||||+|+..+  +.+++++|++ |  ++++.+|..|.||||+|++.++ .+++++|...
T Consensus       194 Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g--adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~  265 (446)
T PHA02946        194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-S--TDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST  265 (446)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-C--CCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC
Confidence            99999999999999999999999986  7899999985 6  6889999999999999999988 4788777554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=306.84  Aligned_cols=221  Identities=23%  Similarity=0.326  Sum_probs=208.4

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA  116 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~  116 (634)
                      .+++|+.|++.|+.++++.|++ .|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~-~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLD-IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            3678999999999999999998 799999999999999999999999999999999999999998999999999999999


Q ss_pred             HHHHHHHHhcCCCCC-ccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCC
Q 006702          117 IQVAELLLREGARVN-AADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA  195 (634)
Q Consensus       117 ~~iv~~Ll~~gad~~-~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga  195 (634)
                      .+++++|++.|++.+ ..+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|++.|+
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~  159 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA  159 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999998774 4577899999999999999999999988 99999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCC-CHHHHHHhcCcHHHHHHHHHH
Q 006702          196 YRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL-TPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       196 ~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~-Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      +++.+|..|.||||+|+..|+.+++++|+++|  ++++..+..|. ||+++|+..++.+++++|.+.
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g--a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~  224 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG--ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR  224 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999999999999999999  56777887774 899999999999999997653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=311.73  Aligned_cols=253  Identities=26%  Similarity=0.298  Sum_probs=222.0

Q ss_pred             cccccchhhHHHHHHHcC---CHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCc
Q 006702           31 VVDEESLRNDVYTAAAYG---DLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN-RTAAAQYIIEHGGDVNAADHTGQT  106 (634)
Q Consensus        31 ~~~~~~~~~~L~~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g-~~~~v~~Ll~~gad~n~~~~~g~t  106 (634)
                      ...+..+.||||.|+..|   +.++++.|++ .|++++.++..|.||||+|+..| ..+++++|+++|+++|.+|..|.|
T Consensus        41 n~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~-~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~t  119 (471)
T PHA03095         41 NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLE-AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRT  119 (471)
T ss_pred             ccCCCCCCCHHHHHHHhcCCChHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            445677899999999999   9999999998 89999999999999999999999 599999999999999999999999


Q ss_pred             HHHHHH--HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhC--CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhc-
Q 006702          107 ALHWSA--VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG--QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK-  181 (634)
Q Consensus       107 pLh~A~--~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-  181 (634)
                      |||+|+  ..++.+++++|+++|++++.+|..|.||||+|+..+  +.++++.|++. |++++..|..|.||||+|+.. 
T Consensus       120 pLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~-g~~~~~~d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        120 PLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDA-GADVYAVDDRFRSLLHHHLQSF  198 (471)
T ss_pred             HHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHHC
Confidence            999999  556899999999999999999999999999999876  57899999988 999999999999999999875 


Q ss_pred             -CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHH
Q 006702          182 -GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL--EACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL  258 (634)
Q Consensus       182 -g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~--~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L  258 (634)
                       +..++++.|++.|++++.+|..|.||||+|+..|+.  .+++.|++.|  ++++.+|..|.||||+|+..|+.+++++|
T Consensus       199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g--~din~~d~~g~TpLh~A~~~~~~~~v~~L  276 (471)
T PHA03095        199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG--ISINARNRYGQTPLHYAAVFNNPRACRRL  276 (471)
T ss_pred             CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence             678999999999999999999999999999999875  6889999998  68889999999999999999999999998


Q ss_pred             HHHHH-HhcccCCCCCCcccccccCcchhH
Q 006702          259 GNARR-LLDKRCDGNSPIGKISKLGLAPAL  287 (634)
Q Consensus       259 ~~~~~-l~~~~~~~~~~~~~~~~~g~~~l~  287 (634)
                      .+.+. +...+..+.+|+..+...|...++
T Consensus       277 L~~gad~n~~~~~g~tpl~~A~~~~~~~~v  306 (471)
T PHA03095        277 IALGADINAVSSDGNTPLSLMVRNNNGRAV  306 (471)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHhCCHHHH
Confidence            65432 223344455555555444444433

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-33  Score=283.20  Aligned_cols=206  Identities=17%  Similarity=0.115  Sum_probs=188.1

Q ss_pred             cCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 006702           47 YGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLRE  126 (634)
Q Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~  126 (634)
                      .++.++++.|++ .++  +.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++
T Consensus         9 ~~~~~~~~~Lis-~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSS-KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHh-CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHC
Confidence            577888888888 565  5689999999999999999999999999999998864  68999999999999999999999


Q ss_pred             CCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCC-ChHHHHHHhcCCHHHHHHHhhcCCCCCCCC-CCC
Q 006702          127 GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDG-RSPLHWAAYKGFADCIRLLLFLDAYRGRQD-KEG  204 (634)
Q Consensus       127 gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g  204 (634)
                      |++++.+|..|.||||+|+..|+.++++.|++. |++++.++..| .||||+|+..|+.+++++|++.+.+.  .| ..|
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g  160 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAIL  160 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccC
Confidence            999999999999999999999999999999987 99999999888 59999999999999999999987643  23 358


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCH-HHHHHhcCcHHHHHHHHHHH
Q 006702          205 CTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP-AQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       205 ~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tp-l~~A~~~~~~~i~~~L~~~~  262 (634)
                      .||||+|+..|+.+++++|+++|  ++++.+|..|.|| ||+|++.++.+++++|.+.+
T Consensus       161 ~TpLh~Aa~~g~~eiv~lLL~~g--Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G  217 (284)
T PHA02791        161 LSCIHITIKNGHVDMMILLLDYM--TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD  217 (284)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCC--CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999999999999999  5778899999987 99999999999999986543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=310.57  Aligned_cols=225  Identities=25%  Similarity=0.388  Sum_probs=216.2

Q ss_pred             cccchhhHHHH-----HHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCCCCCCCCC
Q 006702           33 DEESLRNDVYT-----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAA--LNNRTAAAQYIIEHGGDVNAADHTGQ  105 (634)
Q Consensus        33 ~~~~~~~~L~~-----Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa--~~g~~~~v~~Ll~~gad~n~~~~~g~  105 (634)
                      .+..+.++|+.     |+..|+.++++.|++ .|++++..|..|.||||+|+  ..|+.+++++|+++|++++..+..|.
T Consensus        64 ~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~-~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~  142 (480)
T PHA03100         64 STKNNSTPLHYLSNIKYNLTDVKEIVKLLLE-YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE  142 (480)
T ss_pred             ccccCcCHHHHHHHHHHHhhchHHHHHHHHH-CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCC
Confidence            45567899999     999999999999998 89999999999999999999  99999999999999999999999999


Q ss_pred             cHHHHHHHhC--CHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCC------ChHHHH
Q 006702          106 TALHWSAVRG--AIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDG------RSPLHW  177 (634)
Q Consensus       106 tpLh~A~~~g--~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g------~t~Lh~  177 (634)
                      ||||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++..+..|      .||||+
T Consensus       143 t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~t~l~~  221 (480)
T PHA03100        143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN-GADINAGDIETLLFTIFETPLHI  221 (480)
T ss_pred             cHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc-CCCccCCCCCCCcHHHHHhHHHH
Confidence            9999999999  99999999999999999999999999999999999999999988 99999999999      899999


Q ss_pred             HHhcCC--HHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHH
Q 006702          178 AAYKGF--ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA  255 (634)
Q Consensus       178 A~~~g~--~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~  255 (634)
                      |+..|+  .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  +|++.+|..|.||+++|+..++.+++
T Consensus       222 a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g--ad~n~~d~~g~tpl~~A~~~~~~~iv  299 (480)
T PHA03100        222 AACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG--ANPNLVNKYGDTPLHIAILNNNKEIF  299 (480)
T ss_pred             HHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHhCCHHHH
Confidence            999999  99999999999999999999999999999999999999999999  58889999999999999999999999


Q ss_pred             HHHHHH
Q 006702          256 FFLGNA  261 (634)
Q Consensus       256 ~~L~~~  261 (634)
                      ++|.+.
T Consensus       300 ~~Ll~~  305 (480)
T PHA03100        300 KLLLNN  305 (480)
T ss_pred             HHHHhc
Confidence            998653

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-33  Score=307.67  Aligned_cols=239  Identities=20%  Similarity=0.216  Sum_probs=184.7

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      ....+|||.||+.|+.++|+.|++ .|++++.+|..|.||||+||..|+.+++++|++.+.+.+.  ..+.+||+.|+..
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll~-~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~  111 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLLT-RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAFNN  111 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHHHc
Confidence            346789999999999999999998 7999999999999999999999988888888877655443  3556777777766


Q ss_pred             CCHH---------------------------------HHHHHHhcCCCCCccccC-CChHHHHHHHhCCHHHHHHHHHcc
Q 006702          115 GAIQ---------------------------------VAELLLREGARVNAADMY-GYQTTHVAAQYGQTAFLYHIVSKW  160 (634)
Q Consensus       115 g~~~---------------------------------iv~~Ll~~gad~~~~d~~-g~t~L~~Aa~~g~~~~v~~Ll~~~  160 (634)
                      |+.+                                 ++++|+++|++++.++.. |.||||+|+..|+.+++++|++. 
T Consensus       112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-  190 (477)
T PHA02878        112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY-  190 (477)
T ss_pred             CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC-
Confidence            5432                                 666777788888877777 88888888888888888887776 


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCccccCC-C
Q 006702          161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIR-GNLEACTVLVQAGKKEDLMVTDN-T  238 (634)
Q Consensus       161 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~-g~~~iv~~Ll~~g~~~d~~~~d~-~  238 (634)
                      |++++.+|..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+.. ++.+++++|+++|  ++++.++. .
T Consensus       191 gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g--advn~~~~~~  268 (477)
T PHA02878        191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHG--VDVNAKSYIL  268 (477)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC--CCCCccCCCC
Confidence            788888888888888888888888888888888888888888888888888765 5778888888887  45666664 6


Q ss_pred             CCCHHHHHHhcCcHHHHHHHHHHH-HHhcccCCCCCCccccccc
Q 006702          239 GLTPAQLASDKNHRQVAFFLGNAR-RLLDKRCDGNSPIGKISKL  281 (634)
Q Consensus       239 g~Tpl~~A~~~~~~~i~~~L~~~~-~l~~~~~~~~~~~~~~~~~  281 (634)
                      |.||||+|  .++.+++++|.+.+ .+...+.+|.+|++.+...
T Consensus       269 g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        269 GLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             CCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence            78888888  35567777766543 3444566777777766553

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.9e-33  Score=310.39  Aligned_cols=245  Identities=20%  Similarity=0.185  Sum_probs=200.7

Q ss_pred             ccchhhHHHHHHH--cCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCCcHHH
Q 006702           34 EESLRNDVYTAAA--YGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNR--TAAAQYIIEHGGDVNAADHTGQTALH  109 (634)
Q Consensus        34 ~~~~~~~L~~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~--~~~v~~Ll~~gad~n~~~~~g~tpLh  109 (634)
                      ++.+.+|||.|+.  .++.++++.|++ .|++++.+|..|.||||+|+..|+  .++|++|+++|+|+|.+|..|.||||
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe-~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh  252 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCN-NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIM  252 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            6778999998864  468899999998 899999999999999999999995  58999999999999999999999999


Q ss_pred             HH-------------------------------------HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHH--hCCH
Q 006702          110 WS-------------------------------------AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ--YGQT  150 (634)
Q Consensus       110 ~A-------------------------------------~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~--~g~~  150 (634)
                      +|                                     +..|+.+++++|+++|++++.+|..|+||||+|+.  .++.
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~  332 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIST  332 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCc
Confidence            65                                     44578899999999999999999999999998764  4678


Q ss_pred             HHHHHHHHccCCCCCCCCCCCChHHHHHHh--------------cCCHHHHHHHhhcCCCCCCCCCCCCcHHHHH----H
Q 006702          151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAY--------------KGFADCIRLLLFLDAYRGRQDKEGCTPLHWA----A  212 (634)
Q Consensus       151 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--------------~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A----~  212 (634)
                      +++++|++. |++++.+|..|.||||+|+.              .++.+++++|++.|++++.+|..|.||||.+    .
T Consensus       333 eIVklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~  411 (764)
T PHA02716        333 DIIKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQ  411 (764)
T ss_pred             hHHHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHH
Confidence            999999987 99999999999999999875              3678999999999999999999999999942    2


Q ss_pred             HcCCHHHHHHHHHcCCC-----------------------------------------------------------CCcc
Q 006702          213 IRGNLEACTVLVQAGKK-----------------------------------------------------------EDLM  233 (634)
Q Consensus       213 ~~g~~~iv~~Ll~~g~~-----------------------------------------------------------~d~~  233 (634)
                      ..++.+++++|++.|..                                                           .+++
T Consensus       412 n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN  491 (764)
T PHA02716        412 NYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNA  491 (764)
T ss_pred             hcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhcccc
Confidence            34678999998886421                                                           1234


Q ss_pred             ccCCCCCCHHHHHHhcCcHHHH-----HHHHHHHHHhcccCCCCCCcccccccCcchhHHHH
Q 006702          234 VTDNTGLTPAQLASDKNHRQVA-----FFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCV  290 (634)
Q Consensus       234 ~~d~~g~Tpl~~A~~~~~~~i~-----~~L~~~~~l~~~~~~~~~~~~~~~~~g~~~l~~~~  290 (634)
                      .+|..|.||||+|+..++.+++     ++|.+.      +.+.+    ...+.|.+|+.+++
T Consensus       492 ~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~------GADIN----~~d~~G~TPLh~A~  543 (764)
T PHA02716        492 VCETSGMTPLHVSIISHTNANIVMDSFVYLLSI------QYNIN----IPTKNGVTPLMLTM  543 (764)
T ss_pred             ccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC------CCCCc----ccCCCCCCHHHHHH
Confidence            5578899999999999887544     776543      22222    22455666666554

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=303.22  Aligned_cols=227  Identities=24%  Similarity=0.286  Sum_probs=211.3

Q ss_pred             cccccchhhHHHHHHHcC-CHHHHHHHHhccCCCCcCCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 006702           31 VVDEESLRNDVYTAAAYG-DLEKLQRLVECEGCSVSEPDGLGYYALQWAA--LNNRTAAAQYIIEHGGDVNAADHTGQTA  107 (634)
Q Consensus        31 ~~~~~~~~~~L~~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa--~~g~~~~v~~Ll~~gad~n~~~~~g~tp  107 (634)
                      +..+..+.||||.|+..| ..++++.|++ .|++++.+|..|.||||+|+  ..++.+++++|+++|++++.+|..|.||
T Consensus        77 n~~~~~g~TpLh~A~~~~~~~~iv~lLl~-~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tp  155 (471)
T PHA03095         77 NAPERCGFTPLHLYLYNATTLDVIKLLIK-AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTP  155 (471)
T ss_pred             CCCCCCCCCHHHHHHHcCCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            445668999999999999 5999999998 89999999999999999999  5678999999999999999999999999


Q ss_pred             HHHHHHhC--CHHHHHHHHhcCCCCCccccCCChHHHHHHHh--CCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC
Q 006702          108 LHWSAVRG--AIQVAELLLREGARVNAADMYGYQTTHVAAQY--GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF  183 (634)
Q Consensus       108 Lh~A~~~g--~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~--g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  183 (634)
                      ||+|+..+  +.+++++|+++|++++..|..|.||||.|+..  +..++++.|++. |++++.+|..|.||||+|+..|.
T Consensus       156 L~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~  234 (471)
T PHA03095        156 LAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPLHSMATGSS  234 (471)
T ss_pred             HHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCC
Confidence            99998876  68999999999999999999999999999986  678899999987 99999999999999999999987


Q ss_pred             H--HHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          184 A--DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       184 ~--~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      .  .+++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|  +|++.+|..|.||+++|+..++.++++.|.+.
T Consensus       235 ~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g--ad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~  312 (471)
T PHA03095        235 CKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALG--ADINAVSSDGNTPLSLMVRNNNGRAVRAALAK  312 (471)
T ss_pred             chHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHhCCHHHHHHHHHh
Confidence            5  6889999999999999999999999999999999999999999  67889999999999999999999999998653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.7e-32  Score=306.71  Aligned_cols=227  Identities=19%  Similarity=0.200  Sum_probs=196.9

Q ss_pred             CcccccchhhHHHHHHHcCC--HHHHHHHHhccCCCCcCCCCCCchHHHHH-----------------------------
Q 006702           30 VVVDEESLRNDVYTAAAYGD--LEKLQRLVECEGCSVSEPDGLGYYALQWA-----------------------------   78 (634)
Q Consensus        30 ~~~~~~~~~~~L~~Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A-----------------------------   78 (634)
                      ++..+..+.||||.|++.|+  .++++.|++ .|++++.+|..|.||||.|                             
T Consensus       205 VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe-~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~  283 (764)
T PHA02716        205 VNLQNNHLITPLHTYLITGNVCASVIKKIIE-LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPM  283 (764)
T ss_pred             CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchh
Confidence            44567789999999999995  589999998 8999999999999999975                             


Q ss_pred             --------HHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH--hCCHHHHHHHHhcCCCCCccccCCChHHHHHHH--
Q 006702           79 --------ALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV--RGAIQVAELLLREGARVNAADMYGYQTTHVAAQ--  146 (634)
Q Consensus        79 --------a~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~--~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~--  146 (634)
                              +..|+.+++++|+++|+++|.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||.|+.  
T Consensus       284 ~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~l  363 (764)
T PHA02716        284 ILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSML  363 (764)
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhh
Confidence                    45678899999999999999999999999999875  468999999999999999999999999999875  


Q ss_pred             ------------hCCHHHHHHHHHccCCCCCCCCCCCChHHHHH----HhcCCHHHHHHHhhcCC---------------
Q 006702          147 ------------YGQTAFLYHIVSKWNADPDVPDNDGRSPLHWA----AYKGFADCIRLLLFLDA---------------  195 (634)
Q Consensus       147 ------------~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A----~~~g~~~~v~~Ll~~ga---------------  195 (634)
                                  .++.+++++|++. |++++.+|..|.||||.+    ...++.+++++|++.|+               
T Consensus       364 av~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~  442 (764)
T PHA02716        364 SVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIR  442 (764)
T ss_pred             hhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhc
Confidence                        3688999999987 999999999999999942    23467788888877542               


Q ss_pred             ----------------------------------------------CCCCCCCCCCcHHHHHHHcCCH-----HHHHHHH
Q 006702          196 ----------------------------------------------YRGRQDKEGCTPLHWAAIRGNL-----EACTVLV  224 (634)
Q Consensus       196 ----------------------------------------------~~~~~d~~g~TpLh~A~~~g~~-----~iv~~Ll  224 (634)
                                                                    +++..|..|+||||+|+..|+.     +++++|+
T Consensus       443 ~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL  522 (764)
T PHA02716        443 VDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL  522 (764)
T ss_pred             cCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH
Confidence                                                          2244577899999999999887     4559999


Q ss_pred             HcCCCCCccccCCCCCCHHHHHHhcCcH-----HHHHHHHH
Q 006702          225 QAGKKEDLMVTDNTGLTPAQLASDKNHR-----QVAFFLGN  260 (634)
Q Consensus       225 ~~g~~~d~~~~d~~g~Tpl~~A~~~~~~-----~i~~~L~~  260 (634)
                      +.|  +|++.+|++|+||||+|+++++.     +++++|.+
T Consensus       523 ~~G--ADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~  561 (764)
T PHA02716        523 SIQ--YNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILD  561 (764)
T ss_pred             hCC--CCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHh
Confidence            999  67889999999999999999976     88888755

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=294.05  Aligned_cols=260  Identities=27%  Similarity=0.357  Sum_probs=226.7

Q ss_pred             cccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 006702           31 VVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW  110 (634)
Q Consensus        31 ~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~  110 (634)
                      +..+..+..|+|.|+..|+.+.++.|++ .++++|..|+.|.||||.||..++.|..+.|++.|+++-..|.+|.+|+|.
T Consensus       115 ~~~n~~~~aplh~A~~~~~~s~L~~Ll~-~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~  193 (929)
T KOG0510|consen  115 PLRNLNKNAPLHLAADSGNYSCLKLLLD-YGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHE  193 (929)
T ss_pred             ChhhhhccCchhhccccchHHHHHHHHH-hcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHH
Confidence            3456677888888888888888888888 678888888888889998888888888888888888888888888888888


Q ss_pred             HHHhCCHHHHHHHHh-----cCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCC--------------CCCCCCCC
Q 006702          111 SAVRGAIQVAELLLR-----EGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD--------------PDVPDNDG  171 (634)
Q Consensus       111 A~~~g~~~iv~~Ll~-----~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~--------------~~~~d~~g  171 (634)
                      |+++|..++++..+.     .+.+++.-+..|.||||.|++.|+.++++.+|+....+              ++..|++|
T Consensus       194 aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg  273 (929)
T KOG0510|consen  194 AARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDG  273 (929)
T ss_pred             HHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccC
Confidence            888888888888887     66788888889999999999999999999988762211              35678999


Q ss_pred             ChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccccCCCCCCHHHHHHhcC
Q 006702          172 RSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ-AGKKEDLMVTDNTGLTPAQLASDKN  250 (634)
Q Consensus       172 ~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~g~~~d~~~~d~~g~Tpl~~A~~~~  250 (634)
                      .||||+|++.|+.++++.|+..|++++.++.++.||||.||..|+.+.|+.||+ .+ ...++..|..|.||||+|+..|
T Consensus       274 ~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~-~rllne~D~~g~tpLHlaa~~g  352 (929)
T KOG0510|consen  274 CTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESD-TRLLNESDLHGMTPLHLAAKSG  352 (929)
T ss_pred             CchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcC-ccccccccccCCCchhhhhhcC
Confidence            999999999999999999999999999999999999999999999999999999 44 3578899999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcc----cCCCCCCcccccccCcchhHHHHHH
Q 006702          251 HRQVAFFLGNARRLLDK----RCDGNSPIGKISKLGLAPALWCVIL  292 (634)
Q Consensus       251 ~~~i~~~L~~~~~l~~~----~~~~~~~~~~~~~~g~~~l~~~~i~  292 (634)
                      |..++++|.+.+++...    +.+++++++.+.++|.+..+-.++.
T Consensus       353 H~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~  398 (929)
T KOG0510|consen  353 HDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS  398 (929)
T ss_pred             HHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH
Confidence            99999999887776654    7889999999999998887766654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=3.7e-31  Score=292.94  Aligned_cols=245  Identities=12%  Similarity=0.130  Sum_probs=161.9

Q ss_pred             cchhhHHHHHHHcC--CHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcC------CHHHHHHHHhcCCCCCCCCCCCCc
Q 006702           35 ESLRNDVYTAAAYG--DLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN------RTAAAQYIIEHGGDVNAADHTGQT  106 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g------~~~~v~~Ll~~gad~n~~~~~g~t  106 (634)
                      ..+.++|+.++..+  +.++++.|++ .|+++|.++ .+.||||.|+.++      +.+++++|+++|+|+|.+|..|.|
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~-~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t  110 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLID-NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVS  110 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHH-cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            34667776655443  6788888888 788888776 4688888887654      467888888888888888888888


Q ss_pred             HHHHHHHh---CCHHHHHHHHhcCCCC-CccccCCChHHHHHHHh--CCHHHHHHHHHccCCCCCC-CCCCCChHHHHHH
Q 006702          107 ALHWSAVR---GAIQVAELLLREGARV-NAADMYGYQTTHVAAQY--GQTAFLYHIVSKWNADPDV-PDNDGRSPLHWAA  179 (634)
Q Consensus       107 pLh~A~~~---g~~~iv~~Ll~~gad~-~~~d~~g~t~L~~Aa~~--g~~~~v~~Ll~~~~~~~~~-~d~~g~t~Lh~A~  179 (634)
                      |||.|+..   |+.+++++|+++|||+ +.+|..|.||||+|+..  ++.++++.|++. |++++. .+..|.||||.|+
T Consensus       111 pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~-Gadi~~~~~~~g~tpL~~a~  189 (494)
T PHA02989        111 PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF-GVNLFEKTSLYGLTPMNIYL  189 (494)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCccccccccCCChHHHHH
Confidence            88877765   5788888888888888 78888888888888754  577888888877 888887 5778888888887


Q ss_pred             hcC----CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHc------CCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhc
Q 006702          180 YKG----FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIR------GNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK  249 (634)
Q Consensus       180 ~~g----~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~------g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~  249 (634)
                      ..+    +.+++++|++.|++++.+|..+.||||.++..      +..+++++|+. |  ++++.+|..|.||||+|+..
T Consensus       190 ~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~--advn~~d~~G~TpL~~Aa~~  266 (494)
T PHA02989        190 RNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-Y--IKINKKDKKGFNPLLISAKV  266 (494)
T ss_pred             hcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-C--CCCCCCCCCCCCHHHHHHHh
Confidence            654    77888888888887766655444444443322      12334443332 2  34444444444444444444


Q ss_pred             CcHHHHHHHHHHH-HHhcccCCCCCCcccccccCcch
Q 006702          250 NHRQVAFFLGNAR-RLLDKRCDGNSPIGKISKLGLAP  285 (634)
Q Consensus       250 ~~~~i~~~L~~~~-~l~~~~~~~~~~~~~~~~~g~~~  285 (634)
                      ++.+++++|.+.+ .+...+..|.+|++.+...+...
T Consensus       267 ~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~  303 (494)
T PHA02989        267 DNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNID  303 (494)
T ss_pred             cCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            4444444443322 22233344444444444444433

>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.98  E-value=3.4e-32  Score=257.50  Aligned_cols=165  Identities=29%  Similarity=0.488  Sum_probs=116.9

Q ss_pred             cccccccccccCCCCCCCCcchhhhhccCCcCccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----
Q 006702          376 SQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVA-----  450 (634)
Q Consensus       376 ~~~C~~C~~~kP~Rs~HC~~C~~CV~rfDHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~-----  450 (634)
                      ..+|.+|..+||||+|||++|++||++|||||||+|||||..||||||+|+++.++++.+..++..+..+.....     
T Consensus       102 ~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~t  181 (309)
T KOG1313|consen  102 DSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEIT  181 (309)
T ss_pred             ccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhcc
Confidence            368999999999999999999999999999999999999999999999999999999887766654322211000     


Q ss_pred             --CCC------chhhh-hhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhh--hhhhhcCCCCCcc
Q 006702          451 --PSS------FGAWM-SYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANAL--RYNYLRGAGGRFR  519 (634)
Q Consensus       451 --~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~TT~E~~~~~--r~~y~~~~~~~~~  519 (634)
                        ++.      ..... .+.......+....++++.+.+.++.+..+|.++|.+|.|.+|.....  |-+|+...   .+
T Consensus       182 ay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~~---R~  258 (309)
T KOG1313|consen  182 AYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAHL---RS  258 (309)
T ss_pred             cccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHhc---cC
Confidence              000      00001 011111111222344455566778889999999999999999976532  33333221   16


Q ss_pred             CCCCHhHHhHHHHhcccCCccccc
Q 006702          520 NPYDHGCKRNCSDFLINGFNEDVE  543 (634)
Q Consensus       520 npyd~G~~~N~~~f~~~~~~~~~~  543 (634)
                      ||++.|+.+||+.|++-...+..|
T Consensus       259 ~~~n~g~k~nWr~fLg~~~~r~~w  282 (309)
T KOG1313|consen  259 NPTNFGGKANWRNFLGLFRGRHFW  282 (309)
T ss_pred             CCcccchHHHHHHhhccccCCcee
Confidence            999999999999999766554333

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7.9e-31  Score=301.63  Aligned_cols=214  Identities=25%  Similarity=0.250  Sum_probs=119.7

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH---------------------
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYII---------------------   91 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll---------------------   91 (634)
                      .+..+.||||.||+.|+.++|+.|++ .|++++..+..|.||||+|+..++.+++++|+                     
T Consensus       174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~-~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~  252 (682)
T PHA02876        174 KDIYCITPIHYAAERGNAKMVNLLLS-YGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNED  252 (682)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCC
Confidence            34455666666666666666666665 55666555555555555555555554444333                     


Q ss_pred             --------hcCCCCCCCCCCCCcHHHHHHHhCCH-HHHHHHHhcCCCCCccccCCChHHHHHHHhC-CHHHHHHHHHccC
Q 006702           92 --------EHGGDVNAADHTGQTALHWSAVRGAI-QVAELLLREGARVNAADMYGYQTTHVAAQYG-QTAFLYHIVSKWN  161 (634)
Q Consensus        92 --------~~gad~n~~~~~g~tpLh~A~~~g~~-~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g-~~~~v~~Ll~~~~  161 (634)
                              +.|++++..+..|.||||+|+..|+. +++++|++.|++++.+|..|.||||+|+..| ..++++.|+.. |
T Consensus       253 ~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-g  331 (682)
T PHA02876        253 LETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML-G  331 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc-C
Confidence                    23334444555555666666655554 3555555666666555555666666666555 35555555544 5


Q ss_pred             CCCCCCCCCCChHHHHHHhc-CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCC
Q 006702          162 ADPDVPDNDGRSPLHWAAYK-GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL  240 (634)
Q Consensus       162 ~~~~~~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~  240 (634)
                      ++++..|..|.||||+|+.. +..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  ++++..+..|.
T Consensus       332 adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g--ad~~~~~~~g~  409 (682)
T PHA02876        332 ADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG--ADIEALSQKIG  409 (682)
T ss_pred             CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCccccCCCCC
Confidence            55555555555555555553 3445555555555555555555555555555555555555555555  34445555555


Q ss_pred             CHHHHHHhcC
Q 006702          241 TPAQLASDKN  250 (634)
Q Consensus       241 Tpl~~A~~~~  250 (634)
                      ||||+|+..+
T Consensus       410 T~Lh~A~~~~  419 (682)
T PHA02876        410 TALHFALCGT  419 (682)
T ss_pred             chHHHHHHcC
Confidence            5555555433

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1e-30  Score=283.42  Aligned_cols=215  Identities=18%  Similarity=0.213  Sum_probs=197.6

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCcHHHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN-AADHTGQTALHW  110 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n-~~~~~g~tpLh~  110 (634)
                      ..+..+.+|||.|+..|+.++++.|++ .|++++..+..+.||||.|+..|+.+++++|++.|++++ ..+..|.||||+
T Consensus        30 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  108 (413)
T PHA02875         30 FEIYDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHL  108 (413)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHH
Confidence            345578999999999999999999998 788999888999999999999999999999999998764 456689999999


Q ss_pred             HHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 006702          111 SAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL  190 (634)
Q Consensus       111 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  190 (634)
                      |+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|
T Consensus       109 A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~L  187 (413)
T PHA02875        109 ATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAMAKGDIAICKML  187 (413)
T ss_pred             HHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987 999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCCcc-ccCCCCCCHHHHHHh
Q 006702          191 LFLDAYRGRQDKEG-CTPLHWAAIRGNLEACTVLVQAGKKEDLM-VTDNTGLTPAQLASD  248 (634)
Q Consensus       191 l~~ga~~~~~d~~g-~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~-~~d~~g~Tpl~~A~~  248 (634)
                      ++.|++++..+..| .||+|+|+..|+.+++++|+++|+++++. ..+.++.||++.+..
T Consensus       188 l~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        188 LDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence            99999999999887 48999999999999999999999655432 346778999998764

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=99.97  E-value=1.2e-31  Score=273.00  Aligned_cols=172  Identities=28%  Similarity=0.426  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHhhhccCCCccccCCCCCCCCCCchhhhhhhccCcchhcccccccccccccccCCCCCCCCcchhhhhcc
Q 006702          324 FLATGGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVEQF  403 (634)
Q Consensus       324 ~l~~~~l~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~rf  403 (634)
                      ++.....+.+++....|||+.+.+.......+..++.....       ..+.+++|.+|+.+||+|||||+.|||||+||
T Consensus        64 ~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~  136 (309)
T COG5273          64 VILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDG-------KFGTENFCSTCNIYKPPRSHHCSICNRCVLKF  136 (309)
T ss_pred             hhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcC-------ccccceeccccccccCCCCccchhhcchhhcc
Confidence            34446678889999999999986644333322222222222       22347999999999999999999999999999


Q ss_pred             CCcCccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCchhhhhhhccccchhhHH--HHHHHHHHHH
Q 006702          404 DHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSSFGAWMSYASTHHIGALSF--LIADFSLFFG  481 (634)
Q Consensus       404 DHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  481 (634)
                      ||||||+|||||.+|||+|++|+++.....++......+........+.....+        ..+++.  ..+.+.+++.
T Consensus       137 DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~~~~~f~~  208 (309)
T COG5273         137 DHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLA--------ICFLIFGCSLLGVVFFII  208 (309)
T ss_pred             CccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHH--------HHHHHHhhhHHHHHHHHH
Confidence            999999999999999999999999987776666555554443332222222211        111111  1233344566


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHhhhhhhh
Q 006702          482 VAVLTAVQASQISRNITTNEMANALRYNY  510 (634)
Q Consensus       482 ~~~l~~~~~~~i~~n~TT~E~~~~~r~~y  510 (634)
                      +..++.++.+++..|.||+|.....|...
T Consensus       209 ~~~~~~~~~~~~~~~~t~~e~~~~~~~~~  237 (309)
T COG5273         209 TTLLLLFLIYLILNNLTTIEFIQISRGGS  237 (309)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcccee
Confidence            67788899999999999999888766654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.4e-30  Score=288.01  Aligned_cols=219  Identities=18%  Similarity=0.182  Sum_probs=167.3

Q ss_pred             hhhHHHHHH--HcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHc-----CCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 006702           37 LRNDVYTAA--AYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALN-----NRTAAAQYIIEHGGDVNAADHTGQTALH  109 (634)
Q Consensus        37 ~~~~L~~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~-----g~~~~v~~Ll~~gad~n~~~~~g~tpLh  109 (634)
                      +.+++..+.  ..++.++++.|++ .|++++..|..|.||||.|+.+     ++.+++++|+++|+|+|.+|..|.||||
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~-~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh  114 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFIN-LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLY  114 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHH-CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHH
Confidence            444444333  3447788888887 7888888888888888887754     5678888888888888888888888888


Q ss_pred             HHHHhC---CHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC---HHHHHHHHHccCCCCCCCC-CCCChHHHHHHhc-
Q 006702          110 WSAVRG---AIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ---TAFLYHIVSKWNADPDVPD-NDGRSPLHWAAYK-  181 (634)
Q Consensus       110 ~A~~~g---~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~---~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~-  181 (634)
                      +|+..+   +.+++++|+++|||++.+|..|.||||+|++.++   .++++.|+++ |++++.++ ..|.||||.++.. 
T Consensus       115 ~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~-gadin~~~~~~~~t~Lh~~~~~~  193 (489)
T PHA02798        115 CLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK-GVDINTHNNKEKYDTLHCYFKYN  193 (489)
T ss_pred             HHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh-CCCcccccCcCCCcHHHHHHHhc
Confidence            888765   6788888888888888888888888888888776   7888888876 78887774 4677888877653 


Q ss_pred             ---CCHHHHHHHhhcCCC---------------------------------------CCCCCCCCCcHHHHHHHcCCHHH
Q 006702          182 ---GFADCIRLLLFLDAY---------------------------------------RGRQDKEGCTPLHWAAIRGNLEA  219 (634)
Q Consensus       182 ---g~~~~v~~Ll~~ga~---------------------------------------~~~~d~~g~TpLh~A~~~g~~~i  219 (634)
                         ++.+++++|++.|++                                       +|.+|..|.||||+|+..|+.++
T Consensus       194 ~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~  273 (489)
T PHA02798        194 IDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKI  273 (489)
T ss_pred             cccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHH
Confidence               356777777766654                                       45566778888888888888888


Q ss_pred             HHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHH
Q 006702          220 CTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG  259 (634)
Q Consensus       220 v~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~  259 (634)
                      +++|+++|  +|++.+|..|.|||++|++.++.++++.|.
T Consensus       274 v~~LL~~G--Adin~~d~~G~TpL~~A~~~~~~~iv~~lL  311 (489)
T PHA02798        274 FEYLLQLG--GDINIITELGNTCLFTAFENESKFIFNSIL  311 (489)
T ss_pred             HHHHHHcC--CcccccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence            88888888  567788888888888888888888887764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=4e-31  Score=283.12  Aligned_cols=257  Identities=22%  Similarity=0.312  Sum_probs=233.3

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      ..|+.+.++||.|++..-.+.++.|++ .|++.+-.+..+.+|+|+|+..|+.++++.|+++|+|+|..|..|.||||.|
T Consensus        83 a~D~~~n~~l~~a~~~~~~~~i~~Lls-~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A  161 (929)
T KOG0510|consen   83 AKDSADNTPLHAAVEYNQGDKIQVLLS-YGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLA  161 (929)
T ss_pred             hhhcccCchhHHHhhcchHHHHHHHHh-cCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHH
Confidence            357778999999999999999999999 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHcc----CCCCCCCCCCCChHHHHHHhcCCHHHH
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW----NADPDVPDNDGRSPLHWAAYKGFADCI  187 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~----~~~~~~~d~~g~t~Lh~A~~~g~~~~v  187 (634)
                      |..++.|..+.|++.|+|+...|..|..|+|.|+..|..+..+..+.+.    +..+|..++.+.||||.|+..|+.+++
T Consensus       162 ~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~l  241 (929)
T KOG0510|consen  162 ARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEML  241 (929)
T ss_pred             HhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHH
Confidence            9999999889999999999999999999999999999999999999833    577899999999999999999999999


Q ss_pred             HHHhhcCCC---------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcH
Q 006702          188 RLLLFLDAY---------------RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR  252 (634)
Q Consensus       188 ~~Ll~~ga~---------------~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~  252 (634)
                      +.+++.|+.               ++..|++|.||||+|+++|+.+.+..|+..|  ++++.+++++.||||.|+..|+.
T Consensus       242 k~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G--a~I~~kn~d~~spLH~AA~yg~~  319 (929)
T KOG0510|consen  242 KMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG--ASINSKNKDEESPLHFAAIYGRI  319 (929)
T ss_pred             HHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC--CcccccCCCCCCchHHHHHcccH
Confidence            999987753               3567899999999999999999999999999  68899999999999999999999


Q ss_pred             HHHHHHHH---HHHHhcccCCCCCCcccccccCcchhHHHHH
Q 006702          253 QVAFFLGN---ARRLLDKRCDGNSPIGKISKLGLAPALWCVI  291 (634)
Q Consensus       253 ~i~~~L~~---~~~l~~~~~~~~~~~~~~~~~g~~~l~~~~i  291 (634)
                      +.++-|.+   .+.+.+.+..+.+|++.+.+.|....+..++
T Consensus       320 ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl  361 (929)
T KOG0510|consen  320 NTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLL  361 (929)
T ss_pred             HHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHH
Confidence            99988766   2345567778889998887777666555443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.1e-30  Score=284.61  Aligned_cols=234  Identities=19%  Similarity=0.219  Sum_probs=195.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhc---cCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q 006702           40 DVYTAAAYGDLEKLQRLVEC---EGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA  116 (634)
Q Consensus        40 ~L~~Aa~~g~~~~v~~Ll~~---~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~  116 (634)
                      .|+.+...++.+.+...++.   .+...+.....+.||||+||..|+.++|++|+++|+++|.+|..|.||||+||..|+
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~   82 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPN   82 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCcc
Confidence            36677777776666666653   111223345568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHH---------------------------------HHHHHHHccCCC
Q 006702          117 IQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA---------------------------------FLYHIVSKWNAD  163 (634)
Q Consensus       117 ~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~---------------------------------~v~~Ll~~~~~~  163 (634)
                      .++++.|++.+++...  ..+.++++.|+..++.+                                 ++++|++. |++
T Consensus        83 ~~~v~~Ll~~~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~-gad  159 (477)
T PHA02878         83 KLGMKEMIRSINKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY-GAD  159 (477)
T ss_pred             HhHHHHHHHHHhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHc-CCC
Confidence            9999999998876655  56788999998876543                                 66667766 999


Q ss_pred             CCCCCCC-CChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCH
Q 006702          164 PDVPDND-GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP  242 (634)
Q Consensus       164 ~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tp  242 (634)
                      ++.+|.. |.||||+|+..|+.+++++|++.|++++.+|..|.||||.|+..|+.+++++|+++|  ++++.+|..|.||
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g--a~in~~d~~g~Tp  237 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG--ASTDARDKCGNTP  237 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC--CCCCCCCCCCCCH
Confidence            9999999 999999999999999999999999999999999999999999999999999999999  6788999999999


Q ss_pred             HHHHHhc-CcHHHHHHHHHHHHHhc-cc-CCCCCCcccc
Q 006702          243 AQLASDK-NHRQVAFFLGNARRLLD-KR-CDGNSPIGKI  278 (634)
Q Consensus       243 l~~A~~~-~~~~i~~~L~~~~~l~~-~~-~~~~~~~~~~  278 (634)
                      ||+|+.. ++.+++++|.+.+.-.. +. ..+.+|++.+
T Consensus       238 Lh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        238 LHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            9999975 68999999876543222 22 2455666555

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.8e-30  Score=294.47  Aligned_cols=221  Identities=22%  Similarity=0.249  Sum_probs=202.5

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA  116 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~  116 (634)
                      ..++|+.|+..|+.++++.|++ .|++++.+|..|.||||+||..|+.++|++|+++|++++..+..|.||||.|+..|+
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~-~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~  223 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLE-GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKN  223 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCC
Confidence            4567889999999999999998 899999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH-----------------------------hcCCCCCccccCCChHHHHHHHhCCH-HHHHHHHHccCCCCCC
Q 006702          117 IQVAELLL-----------------------------REGARVNAADMYGYQTTHVAAQYGQT-AFLYHIVSKWNADPDV  166 (634)
Q Consensus       117 ~~iv~~Ll-----------------------------~~gad~~~~d~~g~t~L~~Aa~~g~~-~~v~~Ll~~~~~~~~~  166 (634)
                      .+++++|+                             +.|++++..|..|.||||+|+..++. ++++.|++. |++++.
T Consensus       224 ~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~-gadin~  302 (682)
T PHA02876        224 IDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER-GADVNA  302 (682)
T ss_pred             HHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC-CCCCCC
Confidence            88776654                             45667888889999999999999997 477777766 999999


Q ss_pred             CCCCCChHHHHHHhcC-CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCccccCCCCCCHHH
Q 006702          167 PDNDGRSPLHWAAYKG-FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIR-GNLEACTVLVQAGKKEDLMVTDNTGLTPAQ  244 (634)
Q Consensus       167 ~d~~g~t~Lh~A~~~g-~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~-g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~  244 (634)
                      +|.+|.||||+|+..| ..+++++|+..|++++.+|..|.||||+|+.. ++.++++.|++.|  ++++.+|..|.||||
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~g--adin~~d~~G~TpLh  380 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELG--ANVNARDYCDKTPIH  380 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcC--CCCccCCCCCCCHHH
Confidence            9999999999999999 58999999999999999999999999999985 5789999999999  678899999999999


Q ss_pred             HHHhcCcHHHHHHHHHH
Q 006702          245 LASDKNHRQVAFFLGNA  261 (634)
Q Consensus       245 ~A~~~~~~~i~~~L~~~  261 (634)
                      +|+..++.+++++|.+.
T Consensus       381 ~Aa~~~~~~iv~~Ll~~  397 (682)
T PHA02876        381 YAAVRNNVVIINTLLDY  397 (682)
T ss_pred             HHHHcCCHHHHHHHHHC
Confidence            99999999999998653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=286.83  Aligned_cols=232  Identities=21%  Similarity=0.202  Sum_probs=199.4

Q ss_pred             HcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHc--CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC------CH
Q 006702           46 AYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALN--NRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRG------AI  117 (634)
Q Consensus        46 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~--g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g------~~  117 (634)
                      ...+.++++.|++ .|+++|.. ..|.||||.++..  ++.++|++|+++|+|+|.++ .+.||||.|+..+      +.
T Consensus        12 ~~~~~~~v~~LL~-~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         12 DTVDKNALEFLLR-TGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             CcCcHHHHHHHHH-cCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHH
Confidence            3588999999998 89999998 6789998776654  37899999999999999886 5799999998754      57


Q ss_pred             HHHHHHHhcCCCCCccccCCChHHHHHHHh---CCHHHHHHHHHccCCCC-CCCCCCCChHHHHHHhc--CCHHHHHHHh
Q 006702          118 QVAELLLREGARVNAADMYGYQTTHVAAQY---GQTAFLYHIVSKWNADP-DVPDNDGRSPLHWAAYK--GFADCIRLLL  191 (634)
Q Consensus       118 ~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh~A~~~--g~~~~v~~Ll  191 (634)
                      +++++|+++|||++.+|..|.||||.|+..   ++.+++++|+++ |+++ +.+|..|.||||+|+..  ++.+++++|+
T Consensus        89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll  167 (494)
T PHA02989         89 KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILL  167 (494)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence            899999999999999999999999998765   678999999998 9999 89999999999998764  6889999999


Q ss_pred             hcCCCCCC-CCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcC------cHHHHHHHHH
Q 006702          192 FLDAYRGR-QDKEGCTPLHWAAIRG----NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN------HRQVAFFLGN  260 (634)
Q Consensus       192 ~~ga~~~~-~d~~g~TpLh~A~~~g----~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~------~~~i~~~L~~  260 (634)
                      +.|++++. .+..|.||||+|+..+    +.+++++|+++|  ++++.+|..|.||++.+...+      ..+++++|..
T Consensus       168 ~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G--a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~  245 (494)
T PHA02989        168 SFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG--VNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK  245 (494)
T ss_pred             HcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC--CCccccCCccccHHHHHHHhchhhcccchHHHHHHHh
Confidence            99999998 6889999999998764    899999999999  577888989999999877643      4577788777


Q ss_pred             HHHHhcccCCCCCCcccccccCc
Q 006702          261 ARRLLDKRCDGNSPIGKISKLGL  283 (634)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~~g~  283 (634)
                      ...+..++..|.+|++.+...+.
T Consensus       246 ~advn~~d~~G~TpL~~Aa~~~~  268 (494)
T PHA02989        246 YIKINKKDKKGFNPLLISAKVDN  268 (494)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhcC
Confidence            66666677788888887655443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=279.85  Aligned_cols=230  Identities=20%  Similarity=0.216  Sum_probs=189.3

Q ss_pred             CHHHHHHHHhccCCCCcCCCCCCchHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh-----CCHHHHH
Q 006702           49 DLEKLQRLVECEGCSVSEPDGLGYYALQWAAL--NNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR-----GAIQVAE  121 (634)
Q Consensus        49 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~--~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~-----g~~~iv~  121 (634)
                      +++.|+.|++ . .+++.. ..+.|+++.+..  .++.++|++|+++|+|+|.+|..|.||||.|+..     +..++++
T Consensus        17 ~~~~v~~ll~-~-~~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~   93 (489)
T PHA02798         17 KLSTVKLLIK-S-CNPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVK   93 (489)
T ss_pred             cHHHHHHHHh-c-CChhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHH
Confidence            5779999997 3 344444 446787765544  4489999999999999999999999999998864     6799999


Q ss_pred             HHHhcCCCCCccccCCChHHHHHHHhC---CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC---HHHHHHHhhcCC
Q 006702          122 LLLREGARVNAADMYGYQTTHVAAQYG---QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF---ADCIRLLLFLDA  195 (634)
Q Consensus       122 ~Ll~~gad~~~~d~~g~t~L~~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~ga  195 (634)
                      +|+++|||++.+|..|.||||+|+..+   +.+++++|+++ |++++.+|.+|.||||+|+..++   .+++++|++.|+
T Consensus        94 ~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga  172 (489)
T PHA02798         94 ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIEN-GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV  172 (489)
T ss_pred             HHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC
Confidence            999999999999999999999999976   68999999988 99999999999999999999988   899999999999


Q ss_pred             CCCCCC-CCCCcHHHHHHHc----CCHHHHHHHHHcCCCC-------------------------------------Ccc
Q 006702          196 YRGRQD-KEGCTPLHWAAIR----GNLEACTVLVQAGKKE-------------------------------------DLM  233 (634)
Q Consensus       196 ~~~~~d-~~g~TpLh~A~~~----g~~~iv~~Ll~~g~~~-------------------------------------d~~  233 (634)
                      +++.++ ..|.||||.++..    ++.+++++|+++|+++                                     |++
T Consensus       173 din~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN  252 (489)
T PHA02798        173 DINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDIN  252 (489)
T ss_pred             CcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence            999885 5789999998764    4799999999988532                                     456


Q ss_pred             ccCCCCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccccC
Q 006702          234 VTDNTGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKLG  282 (634)
Q Consensus       234 ~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~g  282 (634)
                      .+|..|.||||+|+..++.+++++|.+.+. +...+..|.+|+..+...+
T Consensus       253 ~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        253 QVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             CcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcC
Confidence            688899999999999999999999865332 2223333444444433333

>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.96  E-value=9e-30  Score=242.05  Aligned_cols=113  Identities=35%  Similarity=0.561  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHH-HHHHHHHhhhccCCCccccCCCCCCCCCCchhhhhhhccCcchhcccccccccccccccCCCCCCCC
Q 006702          316 GLLAWSGVFLAT-GGLVLFYRCSRKDPGYIRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCS  394 (634)
Q Consensus       316 ~~~~w~~i~l~~-~~l~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kP~Rs~HC~  394 (634)
                      +..-|+..++++ ..++++..++.+|||.+...........  -|...      .  ......-|.||+++||.|||||+
T Consensus        97 sl~~~il~~l~vivp~i~f~ltc~snpg~i~k~n~s~~~~~--ypYDy------~--if~k~~kCSTCki~KPARSKHCs  166 (341)
T KOG1312|consen   97 SLHYLILPYLLVIVPLIFFTLTCGSNPGIITKANESLFLHV--YPYDY------V--IFPKNVKCSTCKIRKPARSKHCS  166 (341)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhhhccceec--cCccc------e--eecCCCccccccCCCccccccch
Confidence            455566665554 3467778899999999975432111110  01100      0  00112679999999999999999


Q ss_pred             cchhhhhccCCcCccccccccCCChHHHHHHHHHHHHHHHHHHH
Q 006702          395 TCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGA  438 (634)
Q Consensus       395 ~C~~CV~rfDHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~  438 (634)
                      +|||||.||||||.|+|||||++|.|||++|+++...++++...
T Consensus       167 iCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaiv  210 (341)
T KOG1312|consen  167 ICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIV  210 (341)
T ss_pred             HHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998766655433

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.2e-28  Score=238.04  Aligned_cols=176  Identities=16%  Similarity=0.162  Sum_probs=124.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC--CHHHHHHHHhcCCCCCccc-cCCChHHHHHH
Q 006702           69 GLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRG--AIQVAELLLREGARVNAAD-MYGYQTTHVAA  145 (634)
Q Consensus        69 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g--~~~iv~~Ll~~gad~~~~d-~~g~t~L~~Aa  145 (634)
                      +.+.||||+|+..|+.++|+.|++.   ++..|..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            4456777777777777777777764   4556666777777777643  6777777777777777765 36777777766


Q ss_pred             Hh---CCHHHHHHHHHccCCCCCCCCCCCChHHHHHHh--cCCHHHHHHHhhcCCCCCCCCCCCCcHHHH-HHHcCCHHH
Q 006702          146 QY---GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY--KGFADCIRLLLFLDAYRGRQDKEGCTPLHW-AAIRGNLEA  219 (634)
Q Consensus       146 ~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~-A~~~g~~~i  219 (634)
                      ..   ++.+++++|+++ |++++.+|..|.||||+|+.  .++.+++++|++.|++++.+|..|.||||. |+..++.++
T Consensus        96 ~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         96 SFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            43   356777777765 77777777777777777765  356777788887788777777778888874 455677778


Q ss_pred             HHHHHHcCCCCCccccCCCCCCHHHHHHhcC
Q 006702          220 CTVLVQAGKKEDLMVTDNTGLTPAQLASDKN  250 (634)
Q Consensus       220 v~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~  250 (634)
                      +++|+++|  ++++.+|..|+||+++|+.++
T Consensus       175 v~~Ll~~G--adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        175 FDFLTSLG--IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHcC--CCCCCCCCCCCCHHHHHhhhh
Confidence            88888777  466677777888888776654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=4.6e-29  Score=252.35  Aligned_cols=216  Identities=28%  Similarity=0.354  Sum_probs=183.1

Q ss_pred             HHHHHHcCCHHHHHHHHhccC-C---CCcCCCCCCchHHHHHHHcCCHHHHHHHHh-cCCCCCCCC--------CCCCcH
Q 006702           41 VYTAAAYGDLEKLQRLVECEG-C---SVSEPDGLGYYALQWAALNNRTAAAQYIIE-HGGDVNAAD--------HTGQTA  107 (634)
Q Consensus        41 L~~Aa~~g~~~~v~~Ll~~~~-~---~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~-~gad~n~~~--------~~g~tp  107 (634)
                      .+.|++.|.+..+..|+.... .   ++-..+.+|.|||-+||++|+.++|++|++ .++++....        -.|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            347888899888888876321 1   122235678899999999999999999998 466655432        357789


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHH
Q 006702          108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI  187 (634)
Q Consensus       108 Lh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  187 (634)
                      |-.|+..||+++|+.|+++||++|....-..|||-.|+.-|+.++++||+++ |+|++..|..|+|.||+||++|+.+++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~-gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEH-GADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHc-CCCCcccccCCCeeEEeeeccCchHHH
Confidence            8888899999999999999999998888888999999999999999999977 999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHH
Q 006702          188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN  260 (634)
Q Consensus       188 ~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~  260 (634)
                      ++|++.|+|+|.++..|+|+||.++..|+++++++|+++|+..+   +|..|.|||..|+..|+.+++++|.+
T Consensus       167 qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~---~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  167 QYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID---VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee---ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999999999999999999999999999986544   57779999999999999999998863

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.5e-28  Score=237.01  Aligned_cols=177  Identities=15%  Similarity=0.161  Sum_probs=161.5

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCCCCCC-CCCcHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN--RTAAAQYIIEHGGDVNAADH-TGQTALHW  110 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g--~~~~v~~Ll~~gad~n~~~~-~g~tpLh~  110 (634)
                      .++..+||+.|++.|+++.|+.|++.    ++..|..|.||||+|+.++  +.+++++|+++|+++|.++. .|.||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            45678999999999999999999972    5678899999999999865  89999999999999999974 89999999


Q ss_pred             HHHh---CCHHHHHHHHhcCCCCCccccCCChHHHHHHH--hCCHHHHHHHHHccCCCCCCCCCCCChHHHH-HHhcCCH
Q 006702          111 SAVR---GAIQVAELLLREGARVNAADMYGYQTTHVAAQ--YGQTAFLYHIVSKWNADPDVPDNDGRSPLHW-AAYKGFA  184 (634)
Q Consensus       111 A~~~---g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~--~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~-A~~~g~~  184 (634)
                      |+..   ++.+++++|+++|++++.+|..|.||||.|+.  .++.+++++|++. |++++.+|.+|.||||. |+..++.
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~-gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS-GVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCcccccCCCCcHHHHHHHhcCCH
Confidence            8764   47999999999999999999999999999986  4689999999987 99999999999999995 5678899


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCcHHHHHHHcC
Q 006702          185 DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG  215 (634)
Q Consensus       185 ~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g  215 (634)
                      +++++|++.|++++.+|..|.|||++|+.++
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999999999999999764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=269.46  Aligned_cols=227  Identities=12%  Similarity=0.099  Sum_probs=188.9

Q ss_pred             ccccchhhHHHHHHHc---CCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHhcCCCCCCCCCCC
Q 006702           32 VDEESLRNDVYTAAAY---GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTA----AAQYIIEHGGDVNAADHTG  104 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~----~v~~Ll~~gad~n~~~~~g  104 (634)
                      ..++.+.+|||.|+..   |+.++++.||+ .|++++..+..|.||||+|+..|+.+    +++.|++.+..+|..+.  
T Consensus        27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--  103 (661)
T PHA02917         27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--  103 (661)
T ss_pred             ccCCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--
Confidence            3477889999997555   88999999998 89999999999999999999999854    56788887554555432  


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHH--HhCCHHHHHHHHHccCCCCCCCCC---CC--------
Q 006702          105 QTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAA--QYGQTAFLYHIVSKWNADPDVPDN---DG--------  171 (634)
Q Consensus       105 ~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~---~g--------  171 (634)
                      .+++++|+..|+.++|++|+++|+|++.+|..|.||||.|+  ..|+.+++++|++. |++++.+|.   .|        
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~-Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN-GCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc-CCCccccccccccccccccccc
Confidence            37788999999999999999999999999999999999654  57899999999988 999986653   33        


Q ss_pred             ---ChHHHHHHh-----------cCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCC--cc
Q 006702          172 ---RSPLHWAAY-----------KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL--EACTVLVQAGKKED--LM  233 (634)
Q Consensus       172 ---~t~Lh~A~~-----------~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~--~iv~~Ll~~g~~~d--~~  233 (634)
                         .||||+|+.           .++.+++++|++.|++++.+|.+|.||||+|+.+|+.  ++|++|++ |++.+  ..
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~  261 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSY  261 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccccc
Confidence               599999986           4688999999999999999999999999999999985  79999975 74322  12


Q ss_pred             ccCCCCCCHHHHHHhc-------C--cHHHHHHHHHHHH
Q 006702          234 VTDNTGLTPAQLASDK-------N--HRQVAFFLGNARR  263 (634)
Q Consensus       234 ~~d~~g~Tpl~~A~~~-------~--~~~i~~~L~~~~~  263 (634)
                      ..|..|.+|+++|+.-       +  +.+++++|.+.+.
T Consensus       262 ~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga  300 (661)
T PHA02917        262 IDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGK  300 (661)
T ss_pred             ccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCC
Confidence            4667788999999842       1  6688998876653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=268.81  Aligned_cols=206  Identities=17%  Similarity=0.145  Sum_probs=178.7

Q ss_pred             HHHHHHHHhccCCCCcCCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHH----HHHH
Q 006702           50 LEKLQRLVECEGCSVSEPDGLGYYALQWAALN---NRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ----VAEL  122 (634)
Q Consensus        50 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~----iv~~  122 (634)
                      ++.++.|+. ++..++..|..|.||||+|+..   |+.++|++|++.|++++.++..|.||||+|+..|+.+    +++.
T Consensus        12 ~~~~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~   90 (661)
T PHA02917         12 LDELKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMA   90 (661)
T ss_pred             HHHHHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence            578899997 7888888899999999998655   8899999999999999999999999999999999854    5678


Q ss_pred             HHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHH--hcCCHHHHHHHhhcCCCCCCC
Q 006702          123 LLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAA--YKGFADCIRLLLFLDAYRGRQ  200 (634)
Q Consensus       123 Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~~v~~Ll~~ga~~~~~  200 (634)
                      |++.+...+..+.  .++++.|+..++.+++++|+++ |++++.+|.+|+||||.|+  ..|+.+++++|+++|++++.+
T Consensus        91 Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~  167 (661)
T PHA02917         91 LLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYE  167 (661)
T ss_pred             HHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccc
Confidence            8887654555443  3678889999999999999988 9999999999999999654  578999999999999999866


Q ss_pred             CC---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcH--H
Q 006702          201 DK---EG-----------CTPLHWAAI-----------RGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR--Q  253 (634)
Q Consensus       201 d~---~g-----------~TpLh~A~~-----------~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~--~  253 (634)
                      |.   .|           .||||+|+.           .++.++|++|+++|  +|++.+|..|.||||+|+..++.  +
T Consensus       168 d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G--advn~~d~~G~TpLh~A~~~g~~~~e  245 (661)
T PHA02917        168 DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG--IKPSSIDKNYCTALQYYIKSSHIDID  245 (661)
T ss_pred             ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC--CCcccCCCCCCcHHHHHHHcCCCcHH
Confidence            53   34           599999986           45899999999999  68899999999999999999985  7


Q ss_pred             HHHHHHHH
Q 006702          254 VAFFLGNA  261 (634)
Q Consensus       254 i~~~L~~~  261 (634)
                      ++++|.++
T Consensus       246 ivk~Li~g  253 (661)
T PHA02917        246 IVKLLMKG  253 (661)
T ss_pred             HHHHHHhC
Confidence            99998653

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.7e-28  Score=248.25  Aligned_cols=192  Identities=23%  Similarity=0.287  Sum_probs=179.2

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCC--------CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEP--------DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTG  104 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~--------d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g  104 (634)
                      .+..+.+||..||++|+.++|++|++..++++...        .-+|.+||-.|+..||+++||.|+++|+++|......
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TN  117 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTN  117 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccC
Confidence            45567799999999999999999999766665433        4568899999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCH
Q 006702          105 QTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA  184 (634)
Q Consensus       105 ~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  184 (634)
                      .|||..||.-|+.++||+|+++|||++..|..|.|.||+|+..|+.+++++|++. |+|+|.++..|+|+||.|+..|+.
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~-gADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ-GADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHh-CCCcchhcccCchHHHhhhhcccH
Confidence            9999999999999999999999999999999999999999999999999999998 999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 006702          185 DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA  226 (634)
Q Consensus       185 ~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  226 (634)
                      +++++|+.+|+.++ +|..|.|||..|+..|..++|++|++.
T Consensus       197 divq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  197 DIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             HHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            99999999999876 467799999999999999999999974

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=244.48  Aligned_cols=203  Identities=11%  Similarity=0.037  Sum_probs=179.3

Q ss_pred             CCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC------CCCCCCCcHHHHHHH--hCCHHH
Q 006702           48 GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN------AADHTGQTALHWSAV--RGAIQV  119 (634)
Q Consensus        48 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n------~~~~~g~tpLh~A~~--~g~~~i  119 (634)
                      .-.+++-.++-++|.++|..+..|     +|+..+..|++++|+++|+++|      .++..++|+||.|+.  .|+.++
T Consensus        59 ~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei  133 (437)
T PHA02795         59 DPVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI  133 (437)
T ss_pred             CHHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHH
Confidence            445555444444899999887777     8999999999999999999999      788889999999999  899999


Q ss_pred             HHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCC-CC-----CCCCChHHHHHHhcCCHHHHHHHhhc
Q 006702          120 AELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD-VP-----DNDGRSPLHWAAYKGFADCIRLLLFL  193 (634)
Q Consensus       120 v~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~-~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~  193 (634)
                      |++|+++|||++..  .+.||+|.|+..++.+++++|+++ |++.. ..     +..+.|++|.|+..+..+++++|+++
T Consensus       134 V~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~  210 (437)
T PHA02795        134 VDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY  210 (437)
T ss_pred             HHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC
Confidence            99999999999885  458999999999999999999998 76432 22     23478999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcC--------cHHHHHHHHH
Q 006702          194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN--------HRQVAFFLGN  260 (634)
Q Consensus       194 ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~--------~~~i~~~L~~  260 (634)
                      |++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||||+|+..|        +.+++++|.+
T Consensus       211 GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G--AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~  283 (437)
T PHA02795        211 IEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENG--ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR  283 (437)
T ss_pred             cCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence            9999999999999999999999999999999999  678899999999999999988        4689998754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2e-26  Score=242.42  Aligned_cols=183  Identities=17%  Similarity=0.147  Sum_probs=168.7

Q ss_pred             HHHHcCCHHHHHHHHhccCCCCc------CCCCCCchHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           43 TAAAYGDLEKLQRLVECEGCSVS------EPDGLGYYALQWAAL--NNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        43 ~Aa~~g~~~~v~~Ll~~~~~~~~------~~d~~g~t~Lh~Aa~--~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      .|+..+..++++.|+. +|++++      .++..++|+||.|+.  .|+.++|++|+++|||++..  ++.||||+|+..
T Consensus        83 ~~~~~~~k~~~~~l~s-~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVS-KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHh-cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc
Confidence            8999999999999998 899988      788889999999999  89999999999999999985  458999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccc------cCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHH
Q 006702          115 GAIQVAELLLREGARVNAAD------MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIR  188 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~~~~d------~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~  188 (634)
                      |+.+++++|+++|++.....      ..+.+++|.|+..++.+++++|++. |++++.+|..|.||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY-IEDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999998543222      3478899999999999999999988 9999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHHcCC--------HHHHHHHHHcCCC
Q 006702          189 LLLFLDAYRGRQDKEGCTPLHWAAIRGN--------LEACTVLVQAGKK  229 (634)
Q Consensus       189 ~Ll~~ga~~~~~d~~g~TpLh~A~~~g~--------~~iv~~Ll~~g~~  229 (634)
                      +|++.|++++.+|..|.||||+|+..|+        .+++++|+++|++
T Consensus       239 lLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        239 WLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence            9999999999999999999999999984        6999999999953

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=8.7e-28  Score=273.27  Aligned_cols=225  Identities=29%  Similarity=0.377  Sum_probs=157.4

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV  113 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~  113 (634)
                      ++.+.++++.|+++|..+.++.++. .|.+++..+..|.||||.|+..++.++|+.++++|++++.++..|+||+|.|+.
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~-~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~  449 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLE-AGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAK  449 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhh-ccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhh
Confidence            4445555555555555555555554 445555555555555555555555555555555555555555555555555555


Q ss_pred             hC-CHHHHHHHHhcCCCCCccccCCChHHHHHHHhC---------------------------------CHHHHHHHHHc
Q 006702          114 RG-AIQVAELLLREGARVNAADMYGYQTTHVAAQYG---------------------------------QTAFLYHIVSK  159 (634)
Q Consensus       114 ~g-~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g---------------------------------~~~~v~~Ll~~  159 (634)
                      .| ..+++..+++.|++++..-..|.||||+|++.|                                 ....++.+++.
T Consensus       450 ~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~  529 (1143)
T KOG4177|consen  450 KGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEH  529 (1143)
T ss_pred             cccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhc
Confidence            55 444445555555555555555555555555554                                 44445545544


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCC
Q 006702          160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTG  239 (634)
Q Consensus       160 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g  239 (634)
                       |++++.++..|.||||.|+..|+.++|++|+++|++++.+|+.|+||||.||..|+.+++++|+++|  +++|..|.+|
T Consensus       530 -ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G--A~vna~d~~g  606 (1143)
T KOG4177|consen  530 -GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHG--ASVNAADLDG  606 (1143)
T ss_pred             -CCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcC--CCCCcccccC
Confidence             7778888899999999999999999999999999999999999999999999999999999999999  6788999999


Q ss_pred             CCHHHHHHhcCcHHHHHHHHHHH
Q 006702          240 LTPAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       240 ~Tpl~~A~~~~~~~i~~~L~~~~  262 (634)
                      .|||++|+..|+.+++++|....
T Consensus       607 ~TpL~iA~~lg~~~~~k~l~~~~  629 (1143)
T KOG4177|consen  607 FTPLHIAVRLGYLSVVKLLKVVT  629 (1143)
T ss_pred             cchhHHHHHhcccchhhHHHhcc
Confidence            99999999999999999986544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=1.1e-27  Score=272.36  Aligned_cols=253  Identities=30%  Similarity=0.437  Sum_probs=218.0

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      ..+..+.++||.|++.++.++...+++ .+..-...++.|.||+|.|+..|+.++++++++.|+++|.+++.|.||||.|
T Consensus       336 aar~~g~t~lHlaa~~~~~~~~~~l~~-~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~a  414 (1143)
T KOG4177|consen  336 AARTAGYTPLHLAAKEGQVEVAGALLE-HGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVA  414 (1143)
T ss_pred             ccCcCCcccccHhhhhhhHHHHHHhhc-cccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeeh
Confidence            456778999999999999996666666 6777777889999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhC-CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG-QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL  190 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  190 (634)
                      +..++.++|+.++++|++++..+..|+|++|.|+..| ..++...++ +.+.+++..-..|.||||.|+..|+.++++.|
T Consensus       415 a~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~-~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~ll  493 (1143)
T KOG4177|consen  415 AHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLL-QYGADPNAVSKQGFTPLHLAAQEGHTEVVQLL  493 (1143)
T ss_pred             hhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHh-hcCCCcchhccccCcchhhhhccCCchHHHHh
Confidence            9999999999999999999999999999999999999 555555444 45999999999999999999888887766655


Q ss_pred             h---------------------------------hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCC
Q 006702          191 L---------------------------------FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN  237 (634)
Q Consensus       191 l---------------------------------~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~  237 (634)
                      +                                 ++|++++.++..|.||||.|+..|+.++|++|+++|  +|++.+++
T Consensus       494 le~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~g--Adv~ak~~  571 (1143)
T KOG4177|consen  494 LEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHG--ADVNAKDK  571 (1143)
T ss_pred             hhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCC--ccccccCC
Confidence            5                                 445666777889999999999999999999999999  68889999


Q ss_pred             CCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccccCcchhHH
Q 006702          238 TGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKLGLAPALW  288 (634)
Q Consensus       238 ~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~g~~~l~~  288 (634)
                      .|+||||.|+..|+.+++++|.+.+. ....+.++.+|+..+...|.....-
T Consensus       572 ~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k  623 (1143)
T KOG4177|consen  572 LGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVK  623 (1143)
T ss_pred             CCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhh
Confidence            99999999999999999999876553 3445566777777666666544433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.5e-26  Score=250.62  Aligned_cols=212  Identities=17%  Similarity=0.151  Sum_probs=182.7

Q ss_pred             HHcCCHHHHHHHHhccCCCCcCCCCCCchHHHH--HHHcCCHHHHHHHHh------------------------------
Q 006702           45 AAYGDLEKLQRLVECEGCSVSEPDGLGYYALQW--AALNNRTAAAQYIIE------------------------------   92 (634)
Q Consensus        45 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~--Aa~~g~~~~v~~Ll~------------------------------   92 (634)
                      ...++.|+++.|++ +|+++|.+|..|.||||+  |...|+.|+|++|++                              
T Consensus       210 ~~~n~~eiv~lLIs-~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (672)
T PHA02730        210 SESLSKDVIKCLID-NNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRV  288 (672)
T ss_pred             hhccCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhc
Confidence            56789999999998 899999999999999995  556677999999999                              


Q ss_pred             --cCCCCCC--------------------CCCCCCc---------------------HHHHHHHhC---CHHHHHHHHhc
Q 006702           93 --HGGDVNA--------------------ADHTGQT---------------------ALHWSAVRG---AIQVAELLLRE  126 (634)
Q Consensus        93 --~gad~n~--------------------~~~~g~t---------------------pLh~A~~~g---~~~iv~~Ll~~  126 (634)
                        +|+|...                    .+..|.+                     .||.-...+   +.+++++|+++
T Consensus       289 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~  368 (672)
T PHA02730        289 TPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN  368 (672)
T ss_pred             ccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC
Confidence              7888755                    4556654                     677666655   68999999999


Q ss_pred             CCCCCccccCCChHHHHHHHhCC----HHHHHHHHHccCC--CCCCCCCCCChHHHH---HHhcC---------CHHHHH
Q 006702          127 GARVNAADMYGYQTTHVAAQYGQ----TAFLYHIVSKWNA--DPDVPDNDGRSPLHW---AAYKG---------FADCIR  188 (634)
Q Consensus       127 gad~~~~d~~g~t~L~~Aa~~g~----~~~v~~Ll~~~~~--~~~~~d~~g~t~Lh~---A~~~g---------~~~~v~  188 (634)
                      ||+++.. ..|.||||+|+..++    .+++++|+++ |+  +++.+|..|.||||.   |...+         ..++++
T Consensus       369 GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~-Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk  446 (672)
T PHA02730        369 GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVEN-NGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFD  446 (672)
T ss_pred             CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHc-CCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHH
Confidence            9999986 799999999998875    8999999998 65  799999999999984   33332         235799


Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCC-CCCCHHHHHHhc--CcHHHHHHHHHH
Q 006702          189 LLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN-TGLTPAQLASDK--NHRQVAFFLGNA  261 (634)
Q Consensus       189 ~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~-~g~Tpl~~A~~~--~~~~i~~~L~~~  261 (634)
                      +|+++|++++.+|..|.||||+|+..++.+++++|+++|  ++++.+|. .|.||+|.|+..  ++.+++++|.+.
T Consensus       447 ~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~G--AdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~  520 (672)
T PHA02730        447 ILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYG--ASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY  520 (672)
T ss_pred             HHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCC--CCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc
Confidence            999999999999999999999999999999999999999  67888996 599999999874  789999998654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.5e-26  Score=251.47  Aligned_cols=192  Identities=12%  Similarity=0.114  Sum_probs=160.7

Q ss_pred             ccccchhhHHHHHHHcC---CHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcC--CHHHHHHHHhcCCC--CCCCCCCC
Q 006702           32 VDEESLRNDVYTAAAYG---DLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN--RTAAAQYIIEHGGD--VNAADHTG  104 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g---~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g--~~~~v~~Ll~~gad--~n~~~~~g  104 (634)
                      ..++.++|+||.|+..|   +.++++.||+ +|++++.+|..|.||||+|+..+  +.++|++|++.|++  ++..+..+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            35667999999999997   5999999998 89999999999999999999977  79999999999664  47777778


Q ss_pred             CcHHHHHHH--hCCHHHHHHHHh-cCCCCCcccc-----CCChHHHHHHHhCCHHHHHHHHHccCCCCC-------CCCC
Q 006702          105 QTALHWSAV--RGAIQVAELLLR-EGARVNAADM-----YGYQTTHVAAQYGQTAFLYHIVSKWNADPD-------VPDN  169 (634)
Q Consensus       105 ~tpLh~A~~--~g~~~iv~~Ll~-~gad~~~~d~-----~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~-------~~d~  169 (634)
                      .+||+.++.  +++.++|++|++ .++|++....     .|.+|+++|+..++.+++++|++. |++++       ..|.
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~-g~~v~g~~~~~~~~~~  193 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS-ECYSTGYVFRSCMYDS  193 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc-CCcccccccccccccC
Confidence            899998888  889999999996 6788876633     789999999999999999999988 88884       2444


Q ss_pred             CCChHHHH-H------HhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHHH
Q 006702          170 DGRSPLHW-A------AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW--AAIRGNLEACTVLVQ  225 (634)
Q Consensus       170 ~g~t~Lh~-A------~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~--A~~~g~~~iv~~Ll~  225 (634)
                      ...+|+.+ +      ..++..+++++|+++|+++|.+|..|.||||+  |...|+.|+|++|++
T Consensus       194 ~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        194 DRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            55544433 2      45677899999999999999999999999985  555567899999998

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=243.93  Aligned_cols=241  Identities=11%  Similarity=0.020  Sum_probs=199.3

Q ss_pred             cchhhHHH-HHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHH-cCCHHHHHHHHhcCCCCC--------------
Q 006702           35 ESLRNDVY-TAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAAL-NNRTAAAQYIIEHGGDVN--------------   98 (634)
Q Consensus        35 ~~~~~~L~-~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~-~g~~~~v~~Ll~~gad~n--------------   98 (634)
                      ..+.++++ .|...|++|+|+.|++ +|+++|.++..+.||||+|+. .++.|++++|+++|||++              
T Consensus        69 ~~~~~~~~~~~s~n~~lElvk~LI~-~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~  147 (631)
T PHA02792         69 INDFDIFEYLCSDNIDIELLKLLIS-KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQI  147 (631)
T ss_pred             cCCccHHHHHHHhcccHHHHHHHHH-cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhc
Confidence            33445664 5778899999999999 899999999999999999966 699999999999998732              


Q ss_pred             ----------------------CCCCCCCcHHHHHHHhC-------CHHHHHHHHhcCCCCCccccCCChHHHHHHHhC-
Q 006702           99 ----------------------AADHTGQTALHWSAVRG-------AIQVAELLLREGARVNAADMYGYQTTHVAAQYG-  148 (634)
Q Consensus        99 ----------------------~~~~~g~tpLh~A~~~g-------~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g-  148 (634)
                                            ..|..|.||||+|+..+       +.++++.|+++|++++.+|..|.||||+|+.+. 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        148 TRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             ccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHccc
Confidence                                  34556999999999999       899999999999999999999999999999987 


Q ss_pred             -CHHHHHHHHHcc-------------------------------------------------------------------
Q 006702          149 -QTAFLYHIVSKW-------------------------------------------------------------------  160 (634)
Q Consensus       149 -~~~~v~~Ll~~~-------------------------------------------------------------------  160 (634)
                       ..++++.|++..                                                                   
T Consensus       228 i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q  307 (631)
T PHA02792        228 IKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQ  307 (631)
T ss_pred             chHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHH
Confidence             667777666531                                                                   


Q ss_pred             -----------------------CCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCC--CcHHHHHHHcC
Q 006702          161 -----------------------NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEG--CTPLHWAAIRG  215 (634)
Q Consensus       161 -----------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g--~TpLh~A~~~g  215 (634)
                                             |++..  ......+++.|+..|+.+++++|+++|++++.+|..|  .||||+|+...
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~  385 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIH  385 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhc
Confidence                                   11100  0123456889999999999999999999999998875  69999988776


Q ss_pred             CH---HHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccc
Q 006702          216 NL---EACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISK  280 (634)
Q Consensus       216 ~~---~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~  280 (634)
                      ..   +++++|+++|  +|++.+|..|.||||+|+..++.+++++|.+.+. +..++..+.++++.+..
T Consensus       386 ~~~v~~IlklLIs~G--ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        386 ESDVLSILKLCKPYI--DDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             cHhHHHHHHHHHhcC--CccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            54   4688899999  6788999999999999999999999999977653 44567788899887654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.6e-24  Score=251.58  Aligned_cols=223  Identities=22%  Similarity=0.193  Sum_probs=184.5

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhc-cCCCCcCCCCCCchHHH-HHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVEC-EGCSVSEPDGLGYYALQ-WAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh-~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      -...+..++.||+.|+.+.++.+++. .+.++|..|..|.|||| .|+.+++.+++++|+++|+    .+..|.||||.|
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A   89 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI   89 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH
Confidence            34678999999999999999999983 27899999999999999 8899999999999999987    567899999999


Q ss_pred             HHh---CCHHHHHHHHhcCCC------C----CccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCC----------
Q 006702          112 AVR---GAIQVAELLLREGAR------V----NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD----------  168 (634)
Q Consensus       112 ~~~---g~~~iv~~Ll~~gad------~----~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d----------  168 (634)
                      +..   +...+++.+.+.+.+      +    ...+..|.||||+|+..|+.++++.|+++ |++++.++          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCC
Confidence            872   222344444444432      1    11235799999999999999999999998 99998653          


Q ss_pred             ----CCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcC-----C----HHHHHHHHHcCCCC-Cc--
Q 006702          169 ----NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG-----N----LEACTVLVQAGKKE-DL--  232 (634)
Q Consensus       169 ----~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g-----~----~~iv~~Ll~~g~~~-d~--  232 (634)
                          ..|.||||.|+..|+.+++++|++.|+|++.+|..|+||||+|+..+     +    ..+.+++++.+... +.  
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e  248 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE  248 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh
Confidence                35899999999999999999999999999999999999999999987     2    33556666665332 22  


Q ss_pred             --cccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          233 --MVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       233 --~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                        +..|.+|.|||++|+..|+.+++++|.+.
T Consensus       249 l~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       249 LEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence              56799999999999999999999998764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1.3e-25  Score=206.69  Aligned_cols=233  Identities=23%  Similarity=0.279  Sum_probs=202.3

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA  116 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~  116 (634)
                      ++..+-.|...|+-+..+..+.-..--+..+|.+|+.+++.|+-.++.+.++.+|.+|+..|..+..+.+|+.+++..-+
T Consensus        62 ge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~  141 (296)
T KOG0502|consen   62 GESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLH  141 (296)
T ss_pred             CCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHH
Confidence            44445667788888877777663444456678889999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCC
Q 006702          117 IQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY  196 (634)
Q Consensus       117 ~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~  196 (634)
                      ++.+..|.++  .+|..|+.|.|||..|+..|+.+++++||+. |++++...+...++|.+|+..|+.++|++|+.++.|
T Consensus       142 L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vd  218 (296)
T KOG0502|consen  142 LDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTREVD  218 (296)
T ss_pred             HHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC
Confidence            8888877765  5788999999999999999999999999987 999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHHHhcccCCCCCC
Q 006702          197 RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSP  274 (634)
Q Consensus       197 ~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~l~~~~~~~~~~  274 (634)
                      +|..|.+|-|||.+|+..++.++|+.|+..|  +|++..+..|.+++++|+..|.+.+-..+++....+-.+....+|
T Consensus       219 VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG--Ad~t~e~dsGy~~mdlAValGyr~Vqqvie~h~lkl~Q~~~~~~~  294 (296)
T KOG0502|consen  219 VNVYDWNGGTPLLYAVRGNHVKCVESLLNSG--ADVTQEDDSGYWIMDLAVALGYRIVQQVIEKHALKLCQDSEKRTP  294 (296)
T ss_pred             cceeccCCCceeeeeecCChHHHHHHHHhcC--CCcccccccCCcHHHHHHHhhhHHHHHHHHHHHHHHhhcccCCCC
Confidence            9999999999999999999999999999999  688899999999999999999995555555544433333333333

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=6.4e-26  Score=208.78  Aligned_cols=202  Identities=23%  Similarity=0.330  Sum_probs=188.3

Q ss_pred             chhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q 006702           36 SLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRG  115 (634)
Q Consensus        36 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g  115 (634)
                      .+.+.++.|+-.|+.+.+..+|. ++...|+.+-.+.+|+.+++...+.+.+..|.++  .+|..|+.|.|||+||+..|
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttlt-N~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G  171 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTLT-NGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKG  171 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeeec-ccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcC
Confidence            38999999999999999999998 7889999999999999999999999988877764  68899999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCC
Q 006702          116 AIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA  195 (634)
Q Consensus       116 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga  195 (634)
                      ++++|++|++.|||++...+...++|.+|...|..++++.||.+ +.|+|..|-+|.|||.+|++.++.++++.|++.|+
T Consensus       172 ~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r-~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA  250 (296)
T KOG0502|consen  172 HIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR-EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA  250 (296)
T ss_pred             chHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc-CCCcceeccCCCceeeeeecCChHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999988 99999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHH
Q 006702          196 YRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQ  244 (634)
Q Consensus       196 ~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~  244 (634)
                      +++..|..|.+++..|+..|+. +|+..+++.  ++.+.+|+.-+||+|
T Consensus       251 d~t~e~dsGy~~mdlAValGyr-~Vqqvie~h--~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  251 DVTQEDDSGYWIMDLAVALGYR-IVQQVIEKH--ALKLCQDSEKRTPLH  296 (296)
T ss_pred             CcccccccCCcHHHHHHHhhhH-HHHHHHHHH--HHHHhhcccCCCCCC
Confidence            9999999999999999999998 899988876  566677777777764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=3.2e-24  Score=250.49  Aligned_cols=179  Identities=19%  Similarity=0.193  Sum_probs=164.5

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHH
Q 006702           67 PDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ  146 (634)
Q Consensus        67 ~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~  146 (634)
                      .+..+.++||.||..|+.++++.|++.|+|+|..|..|.||||+|+..|+.+++++|+++|+|++.+|.+|.||||.|+.
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            34456799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 006702          147 YGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA  226 (634)
Q Consensus       147 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  226 (634)
                      .|+.++++.|+.. +...+  ...+.++||+|+..|+.+++++|++.|++++.+|.+|.||||+|+..|+.+++++|+++
T Consensus       601 ~g~~~iv~~L~~~-~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  677 (823)
T PLN03192        601 AKHHKIFRILYHF-ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN  677 (823)
T ss_pred             hCCHHHHHHHHhc-CcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence            9999999999965 44433  34577999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCCC-CCHHHHHHhcC
Q 006702          227 GKKEDLMVTDNTG-LTPAQLASDKN  250 (634)
Q Consensus       227 g~~~d~~~~d~~g-~Tpl~~A~~~~  250 (634)
                      |  ++++..|..| .||++++....
T Consensus       678 G--Adv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        678 G--ADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             C--CCCCCCCCCCCCCHHHHHHHHH
Confidence            9  5778889888 89998885543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.3e-24  Score=231.87  Aligned_cols=245  Identities=20%  Similarity=0.222  Sum_probs=213.9

Q ss_pred             CCCcchhhhhcccc------------ccCCCCCCCCCCCCCCcccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCC
Q 006702            1 MSSEIEVVEEVGQS------------SQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPD   68 (634)
Q Consensus         1 ~~~~~~~~e~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d   68 (634)
                      |++++++++.....            +.-........++...+.++-.+.|.||.|+.+|+.++++.|++ ..+.++..|
T Consensus         1 mgk~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle-~ea~ldl~d   79 (854)
T KOG0507|consen    1 MGKKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLD-YEALLDLCD   79 (854)
T ss_pred             CchhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhc-chhhhhhhh
Confidence            66666666654332            22223344455566667788899999999999999999999998 777888888


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhC
Q 006702           69 GLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG  148 (634)
Q Consensus        69 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g  148 (634)
                      ..|.+|||+|+..|+.++++.|+.++..+|..+..|.||||.|+.+|+.+++.+|+++|+|+..+|..+.|+|.+|++.|
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhh
Confidence            99999999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHccCCC--------CCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 006702          149 QTAFLYHIVSKWNAD--------PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC  220 (634)
Q Consensus       149 ~~~~v~~Ll~~~~~~--------~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv  220 (634)
                      ..+++..|+++ ..+        -..++..+.+|||.|+++|+.++++.|++.|.++|.....| |+||.|+..|..++|
T Consensus       160 r~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  160 RAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             hhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhh
Confidence            99999999876 222        12345567899999999999999999999999999988887 999999999999999


Q ss_pred             HHHHHcCCCCCccccCCCCCCHHHHHHhcC
Q 006702          221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKN  250 (634)
Q Consensus       221 ~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~  250 (634)
                      +.|++.|  ++...+|..|+|+|++-.+..
T Consensus       238 r~ll~~g--in~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  238 RFLLEIG--INTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hHHHhhc--cccccccccchHHHHHHHhcc
Confidence            9999999  678899999999999987654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=8.9e-24  Score=246.77  Aligned_cols=178  Identities=18%  Similarity=0.241  Sum_probs=166.2

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSA  112 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~  112 (634)
                      .+....++|+.||..|+.+.++.|++ .|+++|..|..|.||||+||..|+.+++++|+++|+++|.+|..|.||||+|+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLK-AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            34456789999999999999999998 89999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh
Q 006702          113 VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF  192 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  192 (634)
                      ..|+.+++++|++.++..+.  ..|.++||.|+..|+.++++.|++. |++++.+|.+|.||||+|+..|+.+++++|++
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            99999999999998876543  4577999999999999999999987 99999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCC-CcHHHHHHHc
Q 006702          193 LDAYRGRQDKEG-CTPLHWAAIR  214 (634)
Q Consensus       193 ~ga~~~~~d~~g-~TpLh~A~~~  214 (634)
                      .|++++..|..| .||+.++...
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHH
Confidence            999999999988 9999877543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=2.8e-24  Score=222.47  Aligned_cols=214  Identities=29%  Similarity=0.414  Sum_probs=185.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q 006702           40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQV  119 (634)
Q Consensus        40 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~i  119 (634)
                      .+..|+..|+.+.++.||. .++.++..+.+|.|+||.|+...+.+||++|+++|++||..|..|+||||.|+..|+..+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~-~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLN-RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhc-cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            4678899999999999998 778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccccCCChHHHHHHHh-------------C-CH------------HHHHHHHHccCCCCCCCCCCCCh
Q 006702          120 AELLLREGARVNAADMYGYQTTHVAAQY-------------G-QT------------AFLYHIVSKWNADPDVPDNDGRS  173 (634)
Q Consensus       120 v~~Ll~~gad~~~~d~~g~t~L~~Aa~~-------------g-~~------------~~v~~Ll~~~~~~~~~~d~~g~t  173 (634)
                      +++|+++||++...|..|..|+..+...             | ..            +-+...+. .|...+..+..|.|
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~rG~T  200 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARHARGAT  200 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-ccccccccccccch
Confidence            9999999999988887777665443211             1 11            11222233 48888888888999


Q ss_pred             HHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHH
Q 006702          174 PLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ  253 (634)
Q Consensus       174 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~  253 (634)
                      +||.|+.+|+.++.++|++.|.+++.+|.+|+||||.|+..|..+++++|+++|  ++.+.+...|.||+++|.+.-- .
T Consensus       201 ~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g--a~~d~~t~~g~~p~dv~dee~~-~  277 (527)
T KOG0505|consen  201 ALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG--ADMDAKTKMGETPLDVADEEEL-Y  277 (527)
T ss_pred             HHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhh--cccchhhhcCCCCccchhhhhH-H
Confidence            999999999999999999999999999999999999999999999999999999  5777899999999999976543 3


Q ss_pred             HHHHH
Q 006702          254 VAFFL  258 (634)
Q Consensus       254 i~~~L  258 (634)
                      ..++.
T Consensus       278 l~eLe  282 (527)
T KOG0505|consen  278 LLELE  282 (527)
T ss_pred             HHHHH
Confidence            33343

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=4.7e-23  Score=224.49  Aligned_cols=247  Identities=10%  Similarity=0.001  Sum_probs=189.6

Q ss_pred             ccchhhHHHHHHHcCCHHH-HHHHHhccCCCCcCCCCCCchHHHH-HHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEK-LQRLVECEGCSVSEPDGLGYYALQW-AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~-v~~Ll~~~~~~~~~~d~~g~t~Lh~-Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      ..++.|||+.-..+.+..+ ++.++. -+..++..+-+|.+++|+ |+.+|+.|+|++|+++|||+|.++..+.||+|+|
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya  112 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVIL-LLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYA  112 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHH-HHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEe
Confidence            4455699998876666332 223333 445677888888899987 5568899999999999999999999999999999


Q ss_pred             HH-hCCHHHHHHHHhcCCCCC------------------------------------ccccCCChHHHHHHHhC------
Q 006702          112 AV-RGAIQVAELLLREGARVN------------------------------------AADMYGYQTTHVAAQYG------  148 (634)
Q Consensus       112 ~~-~g~~~iv~~Ll~~gad~~------------------------------------~~d~~g~t~L~~Aa~~g------  148 (634)
                      +. .++.+++++|+++|||++                                    ..|..|.||||+|+..+      
T Consensus       113 ~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~  192 (631)
T PHA02792        113 TTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYA  192 (631)
T ss_pred             ecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCccccc
Confidence            66 699999999999998743                                    23566999999999999      


Q ss_pred             -CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcC--CHHHHHHHh----------------------------------
Q 006702          149 -QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG--FADCIRLLL----------------------------------  191 (634)
Q Consensus       149 -~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll----------------------------------  191 (634)
                       +.++++.|+++ |++++.+|..|.||||+|+.+.  +.+++++|+                                  
T Consensus       193 ~~~~v~k~Li~~-g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~  271 (631)
T PHA02792        193 TSLDVINYLISH-EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVD  271 (631)
T ss_pred             CCHHHHHHHHhC-CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHH
Confidence             89999999998 9999999999999999998887  445555444                                  


Q ss_pred             ---------------------------------------------------------hcCCCCCCCCCCCCcHHHHHHHc
Q 006702          192 ---------------------------------------------------------FLDAYRGRQDKEGCTPLHWAAIR  214 (634)
Q Consensus       192 ---------------------------------------------------------~~ga~~~~~d~~g~TpLh~A~~~  214 (634)
                                                                               +.|++..  ...+..+++.|+..
T Consensus       272 ~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~  349 (631)
T PHA02792        272 KLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDN  349 (631)
T ss_pred             HHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHc
Confidence                                                                     3333322  11245678899999


Q ss_pred             CCHHHHHHHHHcCCCCCccccCCCC--CCHHHHHHhcCcHH---HHHHHHHHH-HHhcccCCCCCCcccccccCcchh
Q 006702          215 GNLEACTVLVQAGKKEDLMVTDNTG--LTPAQLASDKNHRQ---VAFFLGNAR-RLLDKRCDGNSPIGKISKLGLAPA  286 (634)
Q Consensus       215 g~~~iv~~Ll~~g~~~d~~~~d~~g--~Tpl~~A~~~~~~~---i~~~L~~~~-~l~~~~~~~~~~~~~~~~~g~~~l  286 (634)
                      |+.++|++|+++|  +|++.+|..|  .||||.|......+   ++++|.+.+ .+..++..+.+|++.+...+...+
T Consensus       350 gn~eIVelLIs~G--ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~ei  425 (631)
T PHA02792        350 RDPKVVEYILKNG--NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSL  425 (631)
T ss_pred             CCHHHHHHHHHcC--CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHH
Confidence            9999999999999  5677888775  69999988776654   456554433 556677778888877765544333

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=3.3e-23  Score=221.17  Aligned_cols=222  Identities=25%  Similarity=0.337  Sum_probs=199.5

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccC------------CCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEG------------CSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTG  104 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~------------~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g  104 (634)
                      ..+-|..|++.||++.+..||+..+            ...+..|..|.|+||.|+.+|+.+++++|+++.+-++..|..|
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg   82 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKG   82 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccC
Confidence            3466889999999999999998432            2356678899999999999999999999999999999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCH
Q 006702          105 QTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA  184 (634)
Q Consensus       105 ~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  184 (634)
                      .+|||+|+..|+.++|++|+.++..+++.+..|.||||.|++.|+.+++.+|+.+ ++++-.+|+++.|+|-+|++-|..
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~-~adp~i~nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKK-NADPFIRNNSKETVLDLASRFGRA  161 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhc-CCCccccCcccccHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999988 999999999999999999999999


Q ss_pred             HHHHHHhhcCCCC--------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHH
Q 006702          185 DCIRLLLFLDAYR--------GRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAF  256 (634)
Q Consensus       185 ~~v~~Ll~~ga~~--------~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~  256 (634)
                      ++++.|+....++        ..++-.+.+|||.|+++|+.++++.|+++|  .++|...+.| |+||-|+..|..+++.
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag--~din~~t~~g-talheaalcgk~evvr  238 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAG--FDINYTTEDG-TALHEAALCGKAEVVR  238 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcC--CCcccccccc-hhhhhHhhcCcchhhh
Confidence            9999998763322        234557789999999999999999999999  6777776666 9999999999999999


Q ss_pred             HHHHHH
Q 006702          257 FLGNAR  262 (634)
Q Consensus       257 ~L~~~~  262 (634)
                      +|.+.+
T Consensus       239 ~ll~~g  244 (854)
T KOG0507|consen  239 FLLEIG  244 (854)
T ss_pred             HHHhhc
Confidence            986543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=5e-22  Score=187.13  Aligned_cols=146  Identities=18%  Similarity=0.130  Sum_probs=109.6

Q ss_pred             cCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH---HHHHHhcCCCCCc
Q 006702           60 EGCSVSEPDGLGYYALQWAALNNRT----AAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQV---AELLLREGARVNA  132 (634)
Q Consensus        60 ~~~~~~~~d~~g~t~Lh~Aa~~g~~----~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~i---v~~Ll~~gad~~~  132 (634)
                      ++++++..+..+.++||.||..|+.    +++++|++.|++++.+|..|+||||+|+..|+.+.   +++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4566667777777888888888877    55566777788888778888888888888776543   6788888888877


Q ss_pred             cc-cCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCC
Q 006702          133 AD-MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGC  205 (634)
Q Consensus       133 ~d-~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~  205 (634)
                      ++ ..|.||||+|+..++.+++++|+.+.+++++.+|..|.||||+|+..++.+++++|++.|++++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            76 46777777777777777777777544777777777777777777777777777777777777777766653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=7e-22  Score=194.81  Aligned_cols=162  Identities=29%  Similarity=0.408  Sum_probs=146.9

Q ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcC-CCCCccccCCChHHHHHHHh-----CCHHHHHHHHHccCCCCCCCC-C
Q 006702           97 VNAADHTGQTALHWSAVRGAIQVAELLLREG-ARVNAADMYGYQTTHVAAQY-----GQTAFLYHIVSKWNADPDVPD-N  169 (634)
Q Consensus        97 ~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~L~~Aa~~-----g~~~~v~~Ll~~~~~~~~~~d-~  169 (634)
                      +|..|.+|+|+||+|+.++++++|+.||+.| +|++..|..|+||+++|+..     .+..+|..|...  .++|.+. .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m--gnVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM--GDVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc--cCcchhhhh
Confidence            7889999999999999999999999999998 68999999999999999864     355788888865  5677664 5


Q ss_pred             CCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhc
Q 006702          170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK  249 (634)
Q Consensus       170 ~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~  249 (634)
                      .|+|+|++|+..|+.++|+.||..|+|+|.+|.+|.|+|+.|+..|+.||+++||.. ..+|+..+|.+|-|+|.+|.+.
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~-p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV-PSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc-CcccceeecCCCchhhhhHHhc
Confidence            699999999999999999999999999999999999999999999999999999987 3489999999999999999999


Q ss_pred             CcHHHHHHHHHH
Q 006702          250 NHRQVAFFLGNA  261 (634)
Q Consensus       250 ~~~~i~~~L~~~  261 (634)
                      ||.||..+|-..
T Consensus       418 gh~eIa~mlYa~  429 (452)
T KOG0514|consen  418 GHREIAVMLYAH  429 (452)
T ss_pred             CchHHHHHHHHH
Confidence            999999887443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.87  E-value=1.9e-21  Score=225.83  Aligned_cols=216  Identities=22%  Similarity=0.173  Sum_probs=172.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCcHHH-HHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHH
Q 006702           69 GLGYYALQWAALNNRTAAAQYIIEH--GGDVNAADHTGQTALH-WSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAA  145 (634)
Q Consensus        69 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~--gad~n~~~~~g~tpLh-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa  145 (634)
                      ..+...++.|+..|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+    ++..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            3467899999999999999999998  8999999999999999 8999999999999999998    6788999999999


Q ss_pred             HhC--CH-HHHHHHHHccCCC------C----CCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCC-----------
Q 006702          146 QYG--QT-AFLYHIVSKWNAD------P----DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-----------  201 (634)
Q Consensus       146 ~~g--~~-~~v~~Ll~~~~~~------~----~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-----------  201 (634)
                      ..+  .. .++..+... +.+      .    ...+..|.||||+|+.+|+.+++++|++.|++++.++           
T Consensus        91 ~~~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAA-FRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             hccHHHHHHHHHHHhhc-ccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            832  22 334444433 211      1    1223569999999999999999999999999998653           


Q ss_pred             ---CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcC-----c----HHHHHHHHHHHHH-----
Q 006702          202 ---KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN-----H----RQVAFFLGNARRL-----  264 (634)
Q Consensus       202 ---~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~-----~----~~i~~~L~~~~~l-----  264 (634)
                         ..|.||||.|+..|+.+++++|+++|  +|++.+|..|.||||+|+..+     +    ..+.+++......     
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g--adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~  247 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDP--ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSK  247 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCC--cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChH
Confidence               35899999999999999999999999  588899999999999999886     2    2233444332211     


Q ss_pred             ---hcccCCCCCCcccccccCcchhHHHHH
Q 006702          265 ---LDKRCDGNSPIGKISKLGLAPALWCVI  291 (634)
Q Consensus       265 ---~~~~~~~~~~~~~~~~~g~~~l~~~~i  291 (634)
                         ...+.++.+|++.+.+.|...+.-.++
T Consensus       248 el~~i~N~~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcCCccHHHHHH
Confidence               234667889998888888777665444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=3e-21  Score=181.82  Aligned_cols=145  Identities=22%  Similarity=0.193  Sum_probs=131.5

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHhCCH----HHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHH---HHHHHHccCCCCC
Q 006702           93 HGGDVNAADHTGQTALHWSAVRGAI----QVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF---LYHIVSKWNADPD  165 (634)
Q Consensus        93 ~gad~n~~~~~g~tpLh~A~~~g~~----~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~---v~~Ll~~~~~~~~  165 (634)
                      +|++++..+..+.++||.||+.|+.    +++++|++.|++++.+|..|+||||+|+..|+.+.   +++|++. |++++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadin   87 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM-GADIN   87 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCCC
Confidence            5778888888999999999999998    67778889999999999999999999999988654   7788877 99999


Q ss_pred             CCC-CCCChHHHHHHhcCCHHHHHHHhh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCC
Q 006702          166 VPD-NDGRSPLHWAAYKGFADCIRLLLF-LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL  240 (634)
Q Consensus       166 ~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~  240 (634)
                      .+| ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|  ++++.++..|.
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g--a~~~~~~~~~~  162 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG--AVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcccCCc
Confidence            998 589999999999999999999995 79999999999999999999999999999999999  56777777764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=4.7e-21  Score=189.04  Aligned_cols=161  Identities=26%  Similarity=0.364  Sum_probs=144.7

Q ss_pred             CcCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHh-----CCHHHHHHHHhcCCCCCccc-cC
Q 006702           64 VSEPDGLGYYALQWAALNNRTAAAQYIIEHG-GDVNAADHTGQTALHWSAVR-----GAIQVAELLLREGARVNAAD-MY  136 (634)
Q Consensus        64 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-ad~n~~~~~g~tpLh~A~~~-----g~~~iv~~Ll~~gad~~~~d-~~  136 (634)
                      +|.-|.+|+|+||||+.++++++|+.||+.| +++|.+|..|+||+|+|+..     .+.++|..|.+.| |+|++- ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            3567889999999999999999999999987 58999999999999998864     4678899999876 677664 57


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhc-CCCCCCCCCCCCcHHHHHHHcC
Q 006702          137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAIRG  215 (634)
Q Consensus       137 g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpLh~A~~~g  215 (634)
                      |+|+|++|+..|+.++++.||.. |+|+|.+|.+|.|+|+.|+..|+.+++++||.. ++|....|.+|.|+|.+|-..|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLac-gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLAC-GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHc-cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            99999999999999999999987 999999999999999999999999999999875 6888999999999999999999


Q ss_pred             CHHHHHHHHHc
Q 006702          216 NLEACTVLVQA  226 (634)
Q Consensus       216 ~~~iv~~Ll~~  226 (634)
                      +.||.-+|..+
T Consensus       419 h~eIa~mlYa~  429 (452)
T KOG0514|consen  419 HREIAVMLYAH  429 (452)
T ss_pred             chHHHHHHHHH
Confidence            99999888765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=3.9e-20  Score=187.88  Aligned_cols=155  Identities=19%  Similarity=0.108  Sum_probs=130.3

Q ss_pred             cCCCCCCch-HHHHHHHcCCHHHHHHHHhcCCCCCCCC----CCCCcHHHHHHHhCCHHHHHHHHhcCCCCCcc-ccCCC
Q 006702           65 SEPDGLGYY-ALQWAALNNRTAAAQYIIEHGGDVNAAD----HTGQTALHWSAVRGAIQVAELLLREGARVNAA-DMYGY  138 (634)
Q Consensus        65 ~~~d~~g~t-~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~----~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~-d~~g~  138 (634)
                      ..+|..|.| +||.|+..|+.+++++|+++|+|+|.++    ..|.||||+|+..|+.+++++|+++|||++.+ +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            345666665 6677777789999999999999999874    58999999999999999999999999999986 46799


Q ss_pred             hHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 006702          139 QTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE  218 (634)
Q Consensus       139 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~  218 (634)
                      ||||.|+..++.+++++|+.. |++++.+|..|.||||+|+..++.+++..+.  |.   ..+..+.+|++++   ++.|
T Consensus       106 TpLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~---~n~e  176 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFLAFMIC--DN---EISNFYKHPKKIL---INFD  176 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC---cccccccChhhhh---ccHH
Confidence            999999999999999999987 9999999999999999999988888776654  32   2456677888875   4789


Q ss_pred             HHHHHHHcCC
Q 006702          219 ACTVLVQAGK  228 (634)
Q Consensus       219 iv~~Ll~~g~  228 (634)
                      ++++|+.++.
T Consensus       177 i~~~Lish~v  186 (300)
T PHA02884        177 ILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHH
Confidence            9999999873

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=2.3e-20  Score=176.51  Aligned_cols=129  Identities=22%  Similarity=0.247  Sum_probs=75.2

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCCcHHHHHHHhCC----HHHHHHHHhcCCCCCcccc
Q 006702           66 EPDGLGYYALQWAALNNRTAAAQYIIE------HGGDVNAADHTGQTALHWSAVRGA----IQVAELLLREGARVNAADM  135 (634)
Q Consensus        66 ~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~------~gad~n~~~~~g~tpLh~A~~~g~----~~iv~~Ll~~gad~~~~d~  135 (634)
                      .+|..|.||||+|+..|+.++++.|++      .|++++.+|..|.||||+|+..|+    .+++++|+++|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            445566666666666666666666542      245666666666666666666666    3556666666666655553


Q ss_pred             -CCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC
Q 006702          136 -YGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD  194 (634)
Q Consensus       136 -~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  194 (634)
                       .|.||||+|+..++.+++++|+...+++++.+|.+|.||||.|+..++.+++++|++.+
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence             55555555555555555555554335555555555555555555555555555555443

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=8e-20  Score=172.80  Aligned_cols=129  Identities=19%  Similarity=0.233  Sum_probs=82.2

Q ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHh------cCCCCCccccCCChHHHHHHHhCC----HHHHHHHHHccCCCCCCC
Q 006702           98 NAADHTGQTALHWSAVRGAIQVAELLLR------EGARVNAADMYGYQTTHVAAQYGQ----TAFLYHIVSKWNADPDVP  167 (634)
Q Consensus        98 n~~~~~g~tpLh~A~~~g~~~iv~~Ll~------~gad~~~~d~~g~t~L~~Aa~~g~----~~~v~~Ll~~~~~~~~~~  167 (634)
                      +.++..|.||||+|++.|+.++++.|++      .|++++.+|..|.||||+|+..|+    .+++++|++. |++++.+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCCC
Confidence            3456678888888888888888877753      245666666666666666666666    3555555554 6666665


Q ss_pred             CC-CCChHHHHHHhcCCHHHHHHHhh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          168 DN-DGRSPLHWAAYKGFADCIRLLLF-LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       168 d~-~g~t~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      +. .|.||||+|+..++.+++++|+. .|++++.+|.+|.||||+|+..++.+++++|++.+
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            53 56666666666666666666665 36666666666666666666666666666666554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=1e-19  Score=162.09  Aligned_cols=144  Identities=24%  Similarity=0.246  Sum_probs=111.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q 006702           40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQV  119 (634)
Q Consensus        40 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~i  119 (634)
                      .+..|+..+.+..|+.||+...-.+|.+|.+|+||||-|+.+|+.+||+.|+..||+++.+...|+||||-||.-.+.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            36678888888888888876556678888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhcCCCCCccccCCChHHHHHHHhCCH-HHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC
Q 006702          120 AELLLREGARVNAADMYGYQTTHVAAQYGQT-AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF  183 (634)
Q Consensus       120 v~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  183 (634)
                      +.+|+++|+|+++......||||+|+...+. ..+.+|+...++.+..++..+.||+.+|-+.+-
T Consensus       146 a~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            8888888888888877778888888776554 455666666667777777777777777766543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.6e-19  Score=183.47  Aligned_cols=153  Identities=19%  Similarity=0.199  Sum_probs=134.1

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCC----CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPD----GLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD-HTGQTA  107 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d----~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~-~~g~tp  107 (634)
                      ++....++|+.|++.|+.++++.|++ .|++++.++    ..|.||||+|+..++.+++++|+++|||+|.++ ..|.||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            45556777899999999999999998 899999874    589999999999999999999999999999864 579999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHH
Q 006702          108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI  187 (634)
Q Consensus       108 Lh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  187 (634)
                      ||.|+..|+.+++++|+++|++++.+|..|.||||+|++.++.+++..+.   +.   ..+..+.+|++.+   ++.+++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC---DN---EISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc---CC---cccccccChhhhh---ccHHHH
Confidence            99999999999999999999999999999999999999999888775543   22   2466677888865   468999


Q ss_pred             HHHhhcCC
Q 006702          188 RLLLFLDA  195 (634)
Q Consensus       188 ~~Ll~~ga  195 (634)
                      ++|+.+++
T Consensus       179 ~~Lish~v  186 (300)
T PHA02884        179 KILVSHFI  186 (300)
T ss_pred             HHHHHHHH
Confidence            99998876

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=6.2e-20  Score=170.91  Aligned_cols=132  Identities=18%  Similarity=0.217  Sum_probs=74.4

Q ss_pred             CcCCCCCCchHHHHHHHcCCHHHHHHHHhcCC--C-----CCCCCCCCCcHHHHHHHhCCHH---HHHHHHhcCCCCCcc
Q 006702           64 VSEPDGLGYYALQWAALNNRTAAAQYIIEHGG--D-----VNAADHTGQTALHWSAVRGAIQ---VAELLLREGARVNAA  133 (634)
Q Consensus        64 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga--d-----~n~~~~~g~tpLh~A~~~g~~~---iv~~Ll~~gad~~~~  133 (634)
                      .+.+|..|.||||+|+..|+.  +++++..+.  +     ++.+|..|.||||+|+..|+.+   ++++|++.|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            344566677777777776662  233222221  1     2234556666666666666553   455666666666665


Q ss_pred             c-cCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCC
Q 006702          134 D-MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR  197 (634)
Q Consensus       134 d-~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~  197 (634)
                      + ..|.||||+|+..++.+++++|+.+.+++++.+|..|.||||+|+..|+.+++++|++.|++.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            5 356666666666666666665555445555555555555665555555555555555555544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.5e-19  Score=168.39  Aligned_cols=132  Identities=21%  Similarity=0.209  Sum_probs=107.3

Q ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCC--C-----CCccccCCChHHHHHHHhCCHH---HHHHHHHccCCCCCC
Q 006702           97 VNAADHTGQTALHWSAVRGAIQVAELLLREGA--R-----VNAADMYGYQTTHVAAQYGQTA---FLYHIVSKWNADPDV  166 (634)
Q Consensus        97 ~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~ga--d-----~~~~d~~g~t~L~~Aa~~g~~~---~v~~Ll~~~~~~~~~  166 (634)
                      ++.+|..|.||||+|++.|+.  ++++...+.  +     +..+|..|.||||+|+..|+.+   ++++|++. |++++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccc
Confidence            456778899999999999983  444433322  2     2346888999999999988864   57777776 899999


Q ss_pred             CC-CCCChHHHHHHhcCCHHHHHHHhh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 006702          167 PD-NDGRSPLHWAAYKGFADCIRLLLF-LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED  231 (634)
Q Consensus       167 ~d-~~g~t~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d  231 (634)
                      +| ..|.||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..|+.+++++|+++|++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            88 489999999999999999999997 489999999999999999999999999999999986543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=1.2e-19  Score=198.63  Aligned_cols=225  Identities=26%  Similarity=0.316  Sum_probs=197.5

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCcHHHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA-DHTGQTALHWS  111 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~-~~~g~tpLh~A  111 (634)
                      .+...+++|-.|+..|+.|+++.|+. .|+++..+|+.|.+||.+|+-.||..+|+.|+++-++++++ |..+.|+|.+|
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~-rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVV-RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHH-hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence            45567899999999999999999998 79999999999999999999999999999999999999876 55889999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCC--CCCCChHHHHHHhcCCHHHHHH
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP--DNDGRSPLHWAAYKGFADCIRL  189 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~--d~~g~t~Lh~A~~~g~~~~v~~  189 (634)
                      |..|+.++|++||.+|++-..++....|||.+|...|..+++..|+.. |..++.+  .+.|-.||++|..+|+.+.++.
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~-GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSS-GSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhc-ccccccccccccCcchhhhhhhccccHHHHH
Confidence            999999999999999999999999999999999999999999999988 8777776  4568899999999999999999


Q ss_pred             HhhcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          190 LLFLDAYRGRQ-DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       190 Ll~~ga~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      |++.|.|+|.. ..+.+|+|-+|+-.|..|+|.+||.+.  +++..+-+.|.|||.-++..|..|+-.+|...
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~--anvehRaktgltplme~AsgGyvdvg~~li~~  981 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ--ANVEHRAKTGLTPLMEMASGGYVDVGNLLIAA  981 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcchHHHHHHHHh--hhhhhhcccCCcccchhhcCCccccchhhhhc
Confidence            99999888764 335678888888888888888888876  56667778888888888888888877776543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=6.1e-18  Score=183.73  Aligned_cols=219  Identities=25%  Similarity=0.290  Sum_probs=179.4

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhcc--------CCCCcCCCCCCchHHHHHHHc---CCHHHHHHHHhcCCC-CCC-
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECE--------GCSVSEPDGLGYYALQWAALN---NRTAAAQYIIEHGGD-VNA-   99 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~--------~~~~~~~d~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gad-~n~-   99 (634)
                      .+...+.+++.|...+..+.+..++...        ..+++++...|.|+||.|..+   ++.++++.|++.-+. +|. 
T Consensus        97 l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~  176 (782)
T KOG3676|consen   97 LKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDI  176 (782)
T ss_pred             hhhcchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhh
Confidence            3444558899999999999999988733        256788888999999999984   456899999986432 222 


Q ss_pred             --CC-CCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccc-----------------------cCCChHHHHHHHhCCHHHH
Q 006702          100 --AD-HTGQTALHWSAVRGAIQVAELLLREGARVNAAD-----------------------MYGYQTTHVAAQYGQTAFL  153 (634)
Q Consensus       100 --~~-~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d-----------------------~~g~t~L~~Aa~~g~~~~v  153 (634)
                        -+ ..|+||||.|+.+.+.++|++|++.|||++++-                       ..|..||..||..++.+++
T Consensus       177 ~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eiv  256 (782)
T KOG3676|consen  177 YTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIV  256 (782)
T ss_pred             hhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHH
Confidence              12 369999999999999999999999999987651                       2477899999999999999


Q ss_pred             HHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-
Q 006702          154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY--RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE-  230 (634)
Q Consensus       154 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~-  230 (634)
                      .+|+++ |+|++.+|..|+|.||..+..-..++..++++.|++  ...+|.+|.|||.+|++.|..++.+.+++..... 
T Consensus       257 rlLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~  335 (782)
T KOG3676|consen  257 RLLLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTD  335 (782)
T ss_pred             HHHHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccc
Confidence            999997 999999999999999999999888999999999999  8889999999999999999999999999982111 


Q ss_pred             -----------CccccCC--CCCCHHHHHHhcCcH
Q 006702          231 -----------DLMVTDN--TGLTPAQLASDKNHR  252 (634)
Q Consensus       231 -----------d~~~~d~--~g~Tpl~~A~~~~~~  252 (634)
                                 +++..|.  +-.+.|.+.+.....
T Consensus       336 W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~  370 (782)
T KOG3676|consen  336 WAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKN  370 (782)
T ss_pred             eeecccccccccchhcccccchhhhhhhhhcCCcH
Confidence                       2333332  445778877766433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=3.1e-18  Score=152.70  Aligned_cols=140  Identities=26%  Similarity=0.319  Sum_probs=100.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHH
Q 006702           74 ALQWAALNNRTAAAQYIIEHGGD-VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF  152 (634)
Q Consensus        74 ~Lh~Aa~~g~~~~v~~Ll~~gad-~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~  152 (634)
                      .+.||+..+....|+.||+..++ +|.+|.+|.||||.|+++|+.+||+.|+..||+++++...|+||||-|+...+.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            56778888888888888877665 78888888888888888888888888888888887777777777777777777777


Q ss_pred             HHHHHHccCCCCCCCCCCCChHHHHHHhcCCH-HHHHHHh-hcCCCCCCCCCCCCcHHHHHHHc
Q 006702          153 LYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA-DCIRLLL-FLDAYRGRQDKEGCTPLHWAAIR  214 (634)
Q Consensus       153 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~-~~v~~Ll-~~ga~~~~~d~~g~TpLh~A~~~  214 (634)
                      +-.||++ |+|++.......||||.||...+. ..+++|+ ..+.++..++..+.||+.+|-+.
T Consensus       146 a~~LLqh-gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  146 AGRLLQH-GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             HHHHHhc-cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            7777766 777777777677777777766554 3444443 34555555666666666666544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.77  E-value=2.6e-19  Score=196.04  Aligned_cols=247  Identities=20%  Similarity=0.241  Sum_probs=208.3

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcC-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSE-PDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW  110 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~  110 (634)
                      ..+..+.++|..|+-.|+..+|+.|+. .-++++. .|..+.|+|.+||..|+.++|++||..|++-..++-...|||-+
T Consensus       785 hrdkkgf~plImaatagh~tvV~~llk-~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsl  863 (2131)
T KOG4369|consen  785 HRDKKGFVPLIMAATAGHITVVQDLLK-AHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSL  863 (2131)
T ss_pred             ccccccchhhhhhcccCchHHHHHHHh-hhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhh
Confidence            457778999999999999999999998 5566665 47889999999999999999999999999988888889999999


Q ss_pred             HHHhCCHHHHHHHHhcCCCCCccc--cCCChHHHHHHHhCCHHHHHHHHHccCCCCCCC-CCCCChHHHHHHhcCCHHHH
Q 006702          111 SAVRGAIQVAELLLREGARVNAAD--MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP-DNDGRSPLHWAAYKGFADCI  187 (634)
Q Consensus       111 A~~~g~~~iv~~Ll~~gad~~~~d--~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~v  187 (634)
                      |...|.++||+.|+.+|+.++.+.  +.|..||++|+.+|+.+.++.|++. |.|+|.. ..+.+|+|-+|+..|+.+++
T Consensus       864 a~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~-gsdiNaqIeTNrnTaltla~fqgr~evv  942 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP-GSDINAQIETNRNTALTLALFQGRPEVV  942 (2131)
T ss_pred             hcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc-cchhccccccccccceeeccccCcchHH
Confidence            999999999999999999988764  6789999999999999999999988 8888764 45678999999999999999


Q ss_pred             HHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH-Hhc
Q 006702          188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR-LLD  266 (634)
Q Consensus       188 ~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~  266 (634)
                      .+||...+++..+-+.|.|||+-++.-|..|+-++|+.+|++.+..-.-..-.|+|-+++.+||...+..|.+... ...
T Consensus       943 ~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v 1022 (2131)
T KOG4369|consen  943 FLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRV 1022 (2131)
T ss_pred             HHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceec
Confidence            9999999999999999999999999999999999999999765544444555688888888888888777654221 222


Q ss_pred             ccCCCCCCcccccc
Q 006702          267 KRCDGNSPIGKISK  280 (634)
Q Consensus       267 ~~~~~~~~~~~~~~  280 (634)
                      ++..|.+++-.+..
T Consensus      1023 ~NkkG~T~Lwla~~ 1036 (2131)
T KOG4369|consen 1023 PNKKGCTVLWLASA 1036 (2131)
T ss_pred             ccCCCCcccchhcc
Confidence            33344444443333

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=1.6e-18  Score=179.96  Aligned_cols=204  Identities=25%  Similarity=0.320  Sum_probs=171.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHH
Q 006702           74 ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL  153 (634)
Q Consensus        74 ~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v  153 (634)
                      .+.-|+..|..+=++.|+..|+++|..+.+|.|+||-+|.-.+.+||++|+++|++++..|..|+||||.|+..|+..++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCCCCCCCCCCChHHHHHHh-------------cC-C------------HHHHHHHhhcCCCCCCCCCCCCcH
Q 006702          154 YHIVSKWNADPDVPDNDGRSPLHWAAY-------------KG-F------------ADCIRLLLFLDAYRGRQDKEGCTP  207 (634)
Q Consensus       154 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~-------------~g-~------------~~~v~~Ll~~ga~~~~~d~~g~Tp  207 (634)
                      ++|++. |+++...+.+|..|+..+..             .| .            .+-++..+..|.+.+..+..|-|.
T Consensus       123 ~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  123 EYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            999988 88888887777766543221             11 1            111223344788888888889999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHHH-hcccCCCCCCcccccc
Q 006702          208 LHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRL-LDKRCDGNSPIGKISK  280 (634)
Q Consensus       208 Lh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~l-~~~~~~~~~~~~~~~~  280 (634)
                      ||.|+.+|..++.++|+++|  .+++.+|.+|.||||.|+.-+..++.++|...+.. ......+.+|+..+..
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag--~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAG--YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhc--cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            99999999999999999999  67889999999999999999999999988765543 3344456667665554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=9.7e-19  Score=167.46  Aligned_cols=158  Identities=21%  Similarity=0.292  Sum_probs=137.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHH
Q 006702           40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQV  119 (634)
Q Consensus        40 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~i  119 (634)
                      +++.-++.|+.-.|+..|+...-|.|.-|..|.+||||||+.|+..+++.|+.+|+.+|..+....||||+|+..|+.++
T Consensus         3 dif~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    3 DIFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH
Confidence            45667788888888888887778899999999999999999999999999999999999999988999999999999999


Q ss_pred             HHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCC
Q 006702          120 AELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRG  198 (634)
Q Consensus       120 v~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~  198 (634)
                      |+.|++..+|+|+.+..|.||||+|+..|...+.+-|+.. |+.++..+++|.|||..|--.-...+.+.--+.|..++
T Consensus        83 vqkll~~kadvnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   83 VQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999999987 99999999999999988743322222233334566655

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=1e-16  Score=174.30  Aligned_cols=222  Identities=23%  Similarity=0.270  Sum_probs=176.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccCCC---------------CcCCCCCCchHHHHHHHcCCHHHHHHHHhcC---------
Q 006702           39 NDVYTAAAYGDLEKLQRLVECEGCS---------------VSEPDGLGYYALQWAALNNRTAAAQYIIEHG---------   94 (634)
Q Consensus        39 ~~L~~Aa~~g~~~~v~~Ll~~~~~~---------------~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g---------   94 (634)
                      .+++..-..|.+..+..++......               ++..+...+.++..|...+..+....|++.+         
T Consensus        54 ~~~~~~~~~g~l~~v~~l~~~~~~~~~~~~~~~~~~~~~~p~~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~  133 (782)
T KOG3676|consen   54 KGLFYNGGKGKLIPLESLVCERNKERNPLDGAFDRKKKSGPNILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTD  133 (782)
T ss_pred             ccccccCCCCcccchHHHHHHHhhhhcccccccccccccCcchhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhh
Confidence            3444455556666666666522211               1212222336778888888888888777655         


Q ss_pred             CCCCCCCCCCCcHHHHHHH---hCCHHHHHHHHhcCCC----C-CccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCC
Q 006702           95 GDVNAADHTGQTALHWSAV---RGAIQVAELLLREGAR----V-NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV  166 (634)
Q Consensus        95 ad~n~~~~~g~tpLh~A~~---~g~~~iv~~Ll~~gad----~-~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~  166 (634)
                      -+++.+...|+|.||.|..   .++.++++.|++.-..    + ......|+||||+|+.+.+.++|.+|++. |+|+++
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~-gADV~a  212 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA-GADVHA  212 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc-CCchhh
Confidence            4678888899999999987   3566899999985322    2 22346899999999999999999999988 999865


Q ss_pred             C---------CC--------------CCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 006702          167 P---------DN--------------DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL  223 (634)
Q Consensus       167 ~---------d~--------------~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~L  223 (634)
                      +         |.              -|..||.+||..++.+++++|+++|||++.+|..|+|.||..+..-..++..++
T Consensus       213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~  292 (782)
T KOG3676|consen  213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLA  292 (782)
T ss_pred             HhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHH
Confidence            3         11              267899999999999999999999999999999999999999999899999999


Q ss_pred             HHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       224 l~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      +++|++.....+|++|.|||.+|+..|..++.+.+.+.
T Consensus       293 L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  293 LELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99997655889999999999999999999999887654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=1.2e-16  Score=134.03  Aligned_cols=89  Identities=38%  Similarity=0.629  Sum_probs=70.2

Q ss_pred             HHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHH
Q 006702           41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA  120 (634)
Q Consensus        41 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv  120 (634)
                      ||.||+.|+.++++.|++ .+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            678888888888888888 5665555    77888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCCCCCccc
Q 006702          121 ELLLREGARVNAAD  134 (634)
Q Consensus       121 ~~Ll~~gad~~~~d  134 (634)
                      ++|+++|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            88888888887764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=6.6e-17  Score=155.00  Aligned_cols=131  Identities=30%  Similarity=0.510  Sum_probs=114.7

Q ss_pred             cCCHHHHHHHH-hcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHc
Q 006702           81 NNRTAAAQYII-EHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK  159 (634)
Q Consensus        81 ~g~~~~v~~Ll-~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~  159 (634)
                      .|+.--|++.+ +..-|.|.-|..|.+||||||+.|+..+|+.|+..|+.+|..+.-..||||+|+..|+-++++.|++.
T Consensus        10 egna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~   89 (448)
T KOG0195|consen   10 EGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR   89 (448)
T ss_pred             cCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHH
Confidence            33333334333 34567888899999999999999999999999999999999999889999999999999999999987


Q ss_pred             cCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHH
Q 006702          160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA  212 (634)
Q Consensus       160 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~  212 (634)
                       .+|+|..+..|+||||+||.-|+..+.+-|+..|+.++..+++|.|||..|-
T Consensus        90 -kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   90 -KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             -hcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence             8999999999999999999999999999999999999999999999998764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=9.9e-16  Score=135.80  Aligned_cols=122  Identities=39%  Similarity=0.600  Sum_probs=65.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHh
Q 006702           68 DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY  147 (634)
Q Consensus        68 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~  147 (634)
                      |..|.||||+|+..++.+++++|++.+++.+..+..|.||||.|+..++.+++++|++.|++++..+..|.||+|.|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            34455666666666666666666665555555555555666666665555566666555555554444555555555555


Q ss_pred             CCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 006702          148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL  190 (634)
Q Consensus       148 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  190 (634)
                      ++.+++++|++. +.+.+..|..+.||++.|...++.+++++|
T Consensus        84 ~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          84 GNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            555555554443 344444444444444444444444444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=1e-15  Score=135.63  Aligned_cols=124  Identities=42%  Similarity=0.615  Sum_probs=96.8

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHH
Q 006702          100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAA  179 (634)
Q Consensus       100 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  179 (634)
                      +|..|.||||.|+..|+.+++++|++.|++.+.++..|.+|+|.|+..++.+++++|+.. +.+++..+..+.||+|+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHH
Confidence            456788888888888888888888888887777777888888888888888888777776 6667777777778888887


Q ss_pred             hcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 006702          180 YKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV  224 (634)
Q Consensus       180 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  224 (634)
                      ..++.+++++|++.+.+.+..|..|.|||++|+..++.+++++|+
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            777777777777777777777777777777777777777777763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=5.4e-16  Score=130.04  Aligned_cols=89  Identities=33%  Similarity=0.577  Sum_probs=69.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHH
Q 006702           75 LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLY  154 (634)
Q Consensus        75 Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~  154 (634)
                      ||+||..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6788888888888888888777766    777888888888888888888888888888777888888888888878777


Q ss_pred             HHHHccCCCCCCCC
Q 006702          155 HIVSKWNADPDVPD  168 (634)
Q Consensus       155 ~Ll~~~~~~~~~~d  168 (634)
                      +|++. |++++.+|
T Consensus        77 ~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHT-TT-TTSS-
T ss_pred             HHHHc-CCCCCCcC
Confidence            77766 77777654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=6.2e-15  Score=118.04  Aligned_cols=104  Identities=23%  Similarity=0.299  Sum_probs=92.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHH
Q 006702           39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ  118 (634)
Q Consensus        39 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~  118 (634)
                      ..+.+++++|.++.|+..+. .|.++|..- .|++|||+||-.|..+++++|+..|++++.+|+.|.|||.-|+..||.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~-~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVN-EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHH-ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            45778999999999999988 678888765 7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCChHHHHH
Q 006702          119 VAELLLREGARVNAADMYGYQTTHVA  144 (634)
Q Consensus       119 iv~~Ll~~gad~~~~d~~g~t~L~~A  144 (634)
                      +|++|++.|||-..+.-+|.+.+..+
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhhc
Confidence            99999999999888887887665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=4.3e-14  Score=138.93  Aligned_cols=127  Identities=36%  Similarity=0.510  Sum_probs=90.6

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC-----HHHHHHHHHccCC---CCCCCCCCC
Q 006702          100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ-----TAFLYHIVSKWNA---DPDVPDNDG  171 (634)
Q Consensus       100 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~-----~~~v~~Ll~~~~~---~~~~~d~~g  171 (634)
                      .+..+.++++.|+..+..+++++|+..|++++.+|..|.||||.|+..++     .++++.|++. |+   ..+.+|..|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~g  147 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDG  147 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCccccCCCC
Confidence            34445566666666666666666666666666666666666666666666     6666666665 44   555667888


Q ss_pred             ChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          172 RSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       172 ~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      .||||+|+..|+.+++++|++.|++++..+..|.|++++|+..++.++++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            88888888888888888888888888888888888888888888888888888764

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.50  E-value=1.2e-13  Score=110.76  Aligned_cols=99  Identities=31%  Similarity=0.473  Sum_probs=52.9

Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHH
Q 006702          108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI  187 (634)
Q Consensus       108 Lh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  187 (634)
                      +.|++.+|..+-|+..+..|-+++..- .|++|||+|+.+|+.+++++|+.. |++++.+|+.|-|||..|+..|+.++|
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHHHHHHHhhHHHH
Confidence            445555555555555555554444322 445555555555555555555544 555555555555555555555555555


Q ss_pred             HHHhhcCCCCCCCCCCCCcHH
Q 006702          188 RLLLFLDAYRGRQDKEGCTPL  208 (634)
Q Consensus       188 ~~Ll~~ga~~~~~d~~g~TpL  208 (634)
                      ++|++.|++...+..+|.+.+
T Consensus        84 klLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             HHHHHcCcccceeCCCchhHH
Confidence            555555555555555554433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=3.2e-13  Score=132.73  Aligned_cols=133  Identities=32%  Similarity=0.403  Sum_probs=114.2

Q ss_pred             CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC-----HHHHHHHHhcCC---CCCc
Q 006702           61 GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA-----IQVAELLLREGA---RVNA  132 (634)
Q Consensus        61 ~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~-----~~iv~~Ll~~ga---d~~~  132 (634)
                      .......+..+.++++.|+..+..+++++|++.|++++.++..|.||||+|+..|+     .++++.|++.|+   +.+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          63 DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             ccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            34445566778889999999999999999999999998888999999999999998     899999999998   5566


Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC
Q 006702          133 ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD  194 (634)
Q Consensus       133 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  194 (634)
                      +|..|.||||+|+..|+.++++.|++. +++++..+..|.|++++|+..++.++++.++..+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            688999999999999999888888887 8888888899999999999999999888888843

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=7e-13  Score=127.65  Aligned_cols=123  Identities=26%  Similarity=0.305  Sum_probs=112.6

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD-HTGQTALHWSA  112 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~-~~g~tpLh~A~  112 (634)
                      -+...++|..++-.|+.+....||+ .-..+|..|+.|.|+|..|+..|+.+++++||+.|+|+|... ..+.||||+|+
T Consensus         9 ld~~~~~Lle~i~Kndt~~a~~LLs-~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEAALALLS-TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             ccchhhHHHHHHccCcHHHHHHHHH-HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            3456789999999999999999998 455689999999999999999999999999999999998754 47899999999


Q ss_pred             HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHH
Q 006702          113 VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV  157 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll  157 (634)
                      .+|+.++.++|++.|+.+...|.-|+|+-.+|+.-|+.+.|..+-
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999999999999999999999999999988886553

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.36  E-value=3.8e-12  Score=145.08  Aligned_cols=107  Identities=24%  Similarity=0.300  Sum_probs=98.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI  117 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~  117 (634)
                      ...|+.|+..|+.+.++.|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~-~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLT-GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            346899999999999999998 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc-------CCCCCccccCCChHHHHHH
Q 006702          118 QVAELLLRE-------GARVNAADMYGYQTTHVAA  145 (634)
Q Consensus       118 ~iv~~Ll~~-------gad~~~~d~~g~t~L~~Aa  145 (634)
                      +++++|+++       |++++..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999998       8888888888887766554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=5.4e-12  Score=143.84  Aligned_cols=106  Identities=24%  Similarity=0.301  Sum_probs=92.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHH
Q 006702           74 ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL  153 (634)
Q Consensus        74 ~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v  153 (634)
                      .|+.|+..|+.++++.|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc------cCCCCCCCCCCCChHHHHHH
Q 006702          154 YHIVSK------WNADPDVPDNDGRSPLHWAA  179 (634)
Q Consensus       154 ~~Ll~~------~~~~~~~~d~~g~t~Lh~A~  179 (634)
                      ++|+..      .+++.+..+..|.+|+..+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            988875      35666677777777766544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=3.2e-12  Score=131.97  Aligned_cols=92  Identities=34%  Similarity=0.460  Sum_probs=76.1

Q ss_pred             HHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHH
Q 006702           41 VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA  120 (634)
Q Consensus        41 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv  120 (634)
                      |..|+..|.+|+|+..+. .-.|+...+++|.|+||-|+..||.+||++||+.|+++|..|.+|+||||.||..+++.++
T Consensus       554 LLDaaLeGEldlVq~~i~-ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIY-EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHH-hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            567888888888888887 5567778888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCCCCCcc
Q 006702          121 ELLLREGARVNAA  133 (634)
Q Consensus       121 ~~Ll~~gad~~~~  133 (634)
                      +.|++.|+.+.+.
T Consensus       633 kqLVe~GaavfAs  645 (752)
T KOG0515|consen  633 KQLVESGAAVFAS  645 (752)
T ss_pred             HHHHhccceEEee
Confidence            8888888877554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.4e-12  Score=98.91  Aligned_cols=55  Identities=49%  Similarity=0.739  Sum_probs=21.2

Q ss_pred             HHhcC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHH
Q 006702           90 IIEHG-GDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVA  144 (634)
Q Consensus        90 Ll~~g-ad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~A  144 (634)
                      ||++| +++|.+|..|.||||+|+..|+.+++++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            44555 55666666666666666666666666666666666666666666666654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=3e-12  Score=96.35  Aligned_cols=54  Identities=39%  Similarity=0.742  Sum_probs=37.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Q 006702           71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLL  124 (634)
Q Consensus        71 g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll  124 (634)
                      |.||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567788888888888888887777777777777788888888888877777775

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=9.2e-12  Score=120.02  Aligned_cols=121  Identities=30%  Similarity=0.363  Sum_probs=105.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCC-CCCCCCcHHHHHHHcC
Q 006702          137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGR-QDKEGCTPLHWAAIRG  215 (634)
Q Consensus       137 g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~TpLh~A~~~g  215 (634)
                      -..||.-++..+..+-...||+. -..+|.+|..|.++|..|+++|+.+++++|++.|+|+|. ++..+.||||.|+.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            34678888888888888888875 455889999999999999999999999999999999986 4567899999999999


Q ss_pred             CHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHH
Q 006702          216 NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN  260 (634)
Q Consensus       216 ~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~  260 (634)
                      +.++++.|++.|+  .....|.-|+|+-++|+--|+.+.|..+.+
T Consensus        91 n~dvcrllldaGa--~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGA--RMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CchHHHHHHhccC--ccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999994  556788999999999999999999888754

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.28  E-value=7.5e-12  Score=94.18  Aligned_cols=54  Identities=46%  Similarity=0.770  Sum_probs=37.8

Q ss_pred             CChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 006702          171 GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV  224 (634)
Q Consensus       171 g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  224 (634)
                      |+||||+|+..|+.+++++|++.|++++.+|.+|.||||+|++.|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567888888888888888888778888777777888888888888888887775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=4.2e-12  Score=96.18  Aligned_cols=56  Identities=34%  Similarity=0.594  Sum_probs=34.1

Q ss_pred             HHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           56 LVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        56 Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      ||+....+++.+|..|.||||+||..|+.+++++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46634489999999999999999999999999999999999999999999999997

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=2.6e-11  Score=125.37  Aligned_cols=118  Identities=27%  Similarity=0.379  Sum_probs=102.2

Q ss_pred             HHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 006702          141 THVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC  220 (634)
Q Consensus       141 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv  220 (634)
                      |.-|+..|.+++|...+.+ -.|+...+.+|-|+||-|+..|+.++|++|++.|+++|..|.+|+||||+|+.-+++.++
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            3457889999999999987 788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCccccCCCCCCHHHHHH--hcCcHHHHHHHHH
Q 006702          221 TVLVQAGKKEDLMVTDNTGLTPAQLAS--DKNHRQVAFFLGN  260 (634)
Q Consensus       221 ~~Ll~~g~~~d~~~~d~~g~Tpl~~A~--~~~~~~i~~~L~~  260 (634)
                      +.|++.|+ +-+..+-.++.||.+-+-  +.|..++.+||..
T Consensus       633 kqLVe~Ga-avfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  633 KQLVESGA-AVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHhccc-eEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999996 333445567888887664  3567778888743

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.96  E-value=4.1e-09  Score=109.88  Aligned_cols=122  Identities=29%  Similarity=0.363  Sum_probs=109.7

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHh
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGD--VNAADHTGQTALHWSAVR  114 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad--~n~~~~~g~tpLh~A~~~  114 (634)
                      ....|..|+..+|+-.++..-. .|-++-.++.+..+.||+|+..|+-++|+|++++|..  ++..|..|+|+||-|+-.
T Consensus       866 iseeil~av~~~D~~klqE~h~-~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHL-NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ  944 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHh-cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh
Confidence            3445899999999877777766 5667778889999999999999999999999999975  677788999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHc
Q 006702          115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK  159 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~  159 (634)
                      ++..+.++|++.||.+...|..|.||-.-|-+.|..++..||-.+
T Consensus       945 ~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999999999999999999998765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.75  E-value=5.9e-09  Score=113.37  Aligned_cols=100  Identities=27%  Similarity=0.365  Sum_probs=89.1

Q ss_pred             cCCHHHHHHHHhcc-CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHH
Q 006702           47 YGDLEKLQRLVECE-GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADH-TGQTALHWSAVRGAIQVAELLL  124 (634)
Q Consensus        47 ~g~~~~v~~Ll~~~-~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~-~g~tpLh~A~~~g~~~iv~~Ll  124 (634)
                      .+....++.+++.. +-..|..|..|+|+||+|+..++.+++++||++|+|++.+|. .|+||||.|+..|+++++-+||
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            34554577777643 234788999999999999999999999999999999999997 7999999999999999999999


Q ss_pred             hcCCCCCccccCCChHHHHHHH
Q 006702          125 REGARVNAADMYGYQTTHVAAQ  146 (634)
Q Consensus       125 ~~gad~~~~d~~g~t~L~~Aa~  146 (634)
                      .+|+.+..+|++|.+||...++
T Consensus       107 ~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  107 SKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hcCCceEEecccCCCHHHHHhh
Confidence            9999999999999999988876

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.70  E-value=6.4e-08  Score=100.02  Aligned_cols=95  Identities=26%  Similarity=0.240  Sum_probs=80.2

Q ss_pred             cCCCCCCchH------HHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCC
Q 006702           65 SEPDGLGYYA------LQWAALNNRTAAAQYIIEHGGDVNAADH-TGQTALHWSAVRGAIQVAELLLREGARVNAADMYG  137 (634)
Q Consensus        65 ~~~d~~g~t~------Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~-~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g  137 (634)
                      ..+|++|.+.      ||-.++.|+.++.-.||..||++|..+. .|.||||.|++.|+..-+++|+-+|||+.+.|.+|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            3455556553      8888899999988888899999988775 68999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHc
Q 006702          138 YQTTHVAAQYGQTAFLYHIVSK  159 (634)
Q Consensus       138 ~t~L~~Aa~~g~~~~v~~Ll~~  159 (634)
                      .||+.+|-+.|+.++.+.|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999998888877764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.68  E-value=6.9e-09  Score=112.83  Aligned_cols=91  Identities=30%  Similarity=0.409  Sum_probs=78.2

Q ss_pred             CCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCC
Q 006702          162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL  240 (634)
Q Consensus       162 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~  240 (634)
                      --.+++|..|+|+||+|+..+..+++++|+++|+|+..+|. .|+||||.|+..|+.+++..||.+|  +.+..+|++|.
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g--~SL~i~Dkegl  120 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG--RSLRIKDKEGL  120 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC--CceEEecccCC
Confidence            34678899999999999999999999999999999999887 5899999999999999999999998  67788999999


Q ss_pred             CHHHHHHhcCcHHH
Q 006702          241 TPAQLASDKNHRQV  254 (634)
Q Consensus       241 Tpl~~A~~~~~~~i  254 (634)
                      +||++.++....++
T Consensus       121 splq~~~r~~~~~i  134 (1267)
T KOG0783|consen  121 SPLQFLSRVLSSTI  134 (1267)
T ss_pred             CHHHHHhhcccccc
Confidence            99998877444443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.66  E-value=2.4e-08  Score=102.63  Aligned_cols=95  Identities=28%  Similarity=0.297  Sum_probs=88.0

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Q 006702          168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS  247 (634)
Q Consensus       168 d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~  247 (634)
                      +.++..++++|++.|+...++.+...|.|++.+|.+.+|+||.||..|+.+++|+|++. .+++.+.+|..|+|||+-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~-~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNA-CKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHH-HcCCCChhhccCCCcchHhH
Confidence            34567889999999999999999999999999999999999999999999999999998 45899999999999999999


Q ss_pred             hcCcHHHHHHHHHHHH
Q 006702          248 DKNHRQVAFFLGNARR  263 (634)
Q Consensus       248 ~~~~~~i~~~L~~~~~  263 (634)
                      .-+|.+++++|.+...
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9999999999987654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.64  E-value=9.5e-08  Score=98.77  Aligned_cols=92  Identities=24%  Similarity=0.301  Sum_probs=85.0

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPD-GLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSA  112 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~  112 (634)
                      +......||..++.|+++..-.||. .|+++|..+ +.|.||||.||+.|+.--+++|+-+|||+++.|.+|.||+.+|-
T Consensus       130 ~~~LsrQLhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  130 AKDLSKQLHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHH
Confidence            3445677999999999999999998 899999886 56999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhc
Q 006702          113 VRGAIQVAELLLRE  126 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~  126 (634)
                      ..||-++.+.|++.
T Consensus       209 ~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  209 QGGHHELAERLVEI  222 (669)
T ss_pred             hcCchHHHHHHHHH
Confidence            99999999999874

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.59  E-value=4.5e-08  Score=100.74  Aligned_cols=89  Identities=22%  Similarity=0.302  Sum_probs=49.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC
Q 006702          104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF  183 (634)
Q Consensus       104 g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  183 (634)
                      +..++++|++.|++..++.+.-.|.|++.+|.+.+|+||.||..|+.+++++|++..+++++.+|..|+|||.-|..-++
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhh
Q 006702          184 ADCIRLLLF  192 (634)
Q Consensus       184 ~~~v~~Ll~  192 (634)
                      .+++++|-+
T Consensus       586 ~~v~k~L~~  594 (622)
T KOG0506|consen  586 KEVVKLLEE  594 (622)
T ss_pred             HHHHHHHHH
Confidence            555555543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.58  E-value=1.5e-07  Score=98.42  Aligned_cols=119  Identities=27%  Similarity=0.296  Sum_probs=100.8

Q ss_pred             HHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCC--CCCCCCCCCcHHHHHHHcCCHH
Q 006702          141 THVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY--RGRQDKEGCTPLHWAAIRGNLE  218 (634)
Q Consensus       141 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~TpLh~A~~~g~~~  218 (634)
                      +..|+..+..--+...-.. |.++-.++.+..+.||+|+..|+-++|++++++|..  ++..|..|.|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            4455555554434444333 788888999999999999999999999999999853  4677889999999999999999


Q ss_pred             HHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH
Q 006702          219 ACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       219 iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~  262 (634)
                      ++.+|++.|  +.+..+|..|+||-..|-+.+..+++.+|++..
T Consensus       949 vc~~lvdag--asl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  949 VCQLLVDAG--ASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHHhcc--hhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            999999999  678899999999999999999999999997643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.55  E-value=8.5e-08  Score=62.19  Aligned_cols=28  Identities=43%  Similarity=0.685  Sum_probs=13.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCC
Q 006702           71 GYYALQWAALNNRTAAAQYIIEHGGDVN   98 (634)
Q Consensus        71 g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n   98 (634)
                      |+||||+||..|+.|++++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4445555555555555555555544444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.54  E-value=1e-07  Score=61.85  Aligned_cols=30  Identities=47%  Similarity=0.736  Sum_probs=27.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCc
Q 006702          103 TGQTALHWSAVRGAIQVAELLLREGARVNA  132 (634)
Q Consensus       103 ~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~  132 (634)
                      +|+||||+||+.|+.++|++|+++|+|++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999874

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.48  E-value=6.4e-06  Score=91.59  Aligned_cols=127  Identities=18%  Similarity=0.213  Sum_probs=104.0

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccC---CCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEG---CSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALH  109 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~---~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh  109 (634)
                      +..........|+..||...|+..++...   .++|..|.-|.++|+.|+.+.+.+++++|++++.++       ..+|.
T Consensus        21 ~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL   93 (822)
T KOG3609|consen   21 DLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALL   93 (822)
T ss_pred             ccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHH
Confidence            34445667889999999999999998543   468889999999999999999999999999986655       35899


Q ss_pred             HHHHhCCHHHHHHHHhcCCCC----------CccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCC
Q 006702          110 WSAVRGAIQVAELLLREGARV----------NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP  167 (634)
Q Consensus       110 ~A~~~g~~~iv~~Ll~~gad~----------~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~  167 (634)
                      .|+..|..++|+.++.+-.+.          ...-..+.||+.+||..++.|+++.|+.+ |+.+..+
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g~~i~~P  160 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-GHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-CCCCCCC
Confidence            999999999999999874332          12234567999999999999999999988 7666543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.47  E-value=2.2e-07  Score=61.93  Aligned_cols=31  Identities=48%  Similarity=0.823  Sum_probs=15.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCCCccc
Q 006702          104 GQTALHWSAVRGAIQVAELLLREGARVNAAD  134 (634)
Q Consensus       104 g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d  134 (634)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4455555555555555555555555554443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.45  E-value=2.6e-07  Score=61.57  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=30.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADH  102 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~  102 (634)
                      +|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            489999999999999999999999999998864

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.40  E-value=1.1e-06  Score=92.79  Aligned_cols=96  Identities=33%  Similarity=0.402  Sum_probs=70.2

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCC--CCc--CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGC--SVS--EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTAL  108 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~--~~~--~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpL  108 (634)
                      .++.....|..|+...|+..+..||. +|.  .+|  ..+.+|+|+||.||..|+..+.++|+-+|+|+-.+|..|.|+|
T Consensus       620 te~~lgqqLl~A~~~~Dl~t~~lLLA-hg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l  698 (749)
T KOG0705|consen  620 TEEPLGQQLLRAVAAEDLQTAILLLA-HGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTAL  698 (749)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHh-ccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhh
Confidence            35556666777887778877777777 443  222  2355677888888888888888888888888888888888888


Q ss_pred             HHHHHhCCHHHHHHHHhcCCC
Q 006702          109 HWSAVRGAIQVAELLLREGAR  129 (634)
Q Consensus       109 h~A~~~g~~~iv~~Ll~~gad  129 (634)
                      .+|-+.|.-+++..|+++|+.
T Consensus       699 ~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  699 FYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhHhhcccHHHHHHHHHcCCC
Confidence            888888888888888887764

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.26  E-value=2.1e-06  Score=90.39  Aligned_cols=86  Identities=22%  Similarity=0.260  Sum_probs=44.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhc-cCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHH
Q 006702           40 DVYTAAAYGDLEKLQRLVEC-EGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ  118 (634)
Q Consensus        40 ~L~~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~  118 (634)
                      ++|.++...+.+.+..++.. ....++..|..|.||||.|+..|+.+.++.|+..|+++..+|..|++|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            35555555555544443331 12234455555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHh
Q 006702          119 VAELLLR  125 (634)
Q Consensus       119 iv~~Ll~  125 (634)
                      ++..++.
T Consensus       103 ~i~~vlr  109 (560)
T KOG0522|consen  103 IITEVLR  109 (560)
T ss_pred             HHHHHHH
Confidence            5544443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.24  E-value=2.4e-06  Score=89.96  Aligned_cols=87  Identities=30%  Similarity=0.337  Sum_probs=64.1

Q ss_pred             HHHHHHHhCCHHHHHHH-HHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 006702          140 TTHVAAQYGQTAFLYHI-VSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE  218 (634)
Q Consensus       140 ~L~~Aa~~g~~~~v~~L-l~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~  218 (634)
                      |+|.++.....+-+..+ ..+....++.+|..|+||||+|+..|+.+.++.|+..|+++..+|++|++|||-|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            36666666555444332 22234567778888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHc
Q 006702          219 ACTVLVQA  226 (634)
Q Consensus       219 iv~~Ll~~  226 (634)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            77777765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.15  E-value=5.7e-06  Score=87.46  Aligned_cols=61  Identities=36%  Similarity=0.466  Sum_probs=35.3

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 006702          168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK  228 (634)
Q Consensus       168 d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~  228 (634)
                      +.+|+|+||+||..|+..+.++|+-+|+|+..+|.+|+|+|.||-..|..|++..|+++|.
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            3445555555555555555555555555555555555555555555555555555555553

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.04  E-value=1.5e-05  Score=80.33  Aligned_cols=75  Identities=23%  Similarity=0.403  Sum_probs=62.4

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      .-.|+.|++.||.+.|++|++ .|.++|..|....+||.+|+..||.++||+|+++||--+.-..+|.-. |+++.+
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            567899999999999999999 899999999999999999999999999999999998655444456555 444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.00  E-value=1e-05  Score=91.91  Aligned_cols=129  Identities=23%  Similarity=0.320  Sum_probs=79.7

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHH
Q 006702          133 ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA  212 (634)
Q Consensus       133 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~  212 (634)
                      ....|.+.+|+++..+..-++..+++-.+......|.+|...+|.++..|..-.+....-.|..++.+|..|+||||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            34456666666666666666666665434444455566666666644444333333334456666677777777777777


Q ss_pred             HcCCHHHHHHHHHcCCCC----CccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          213 IRGNLEACTVLVQAGKKE----DLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       213 ~~g~~~iv~~Ll~~g~~~----d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      .+|+..++..|++.|+..    |....+..|.|+-.+|..+|+..+.-+|.+.
T Consensus       650 ~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            777777777776555332    3334455688888888888888888777543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.97  E-value=3.4e-05  Score=85.92  Aligned_cols=122  Identities=18%  Similarity=0.145  Sum_probs=90.7

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcC----CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHh
Q 006702           72 YYALQWAALNNRTAAAQYIIEHG----GDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY  147 (634)
Q Consensus        72 ~t~Lh~Aa~~g~~~~v~~Ll~~g----ad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~  147 (634)
                      .--...|+.+|+...|+..++..    .++|.+|.-|+++|+.|+.+.+.+++++|++++...       ..+|.+|+..
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV   98 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH
Confidence            34566789999999999888753    357778888999999999999999999999987654       4589999999


Q ss_pred             CCHHHHHHHHHccCCCC---------CCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCC
Q 006702          148 GQTAFLYHIVSKWNADP---------DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQ  200 (634)
Q Consensus       148 g~~~~v~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~  200 (634)
                      |..+.++.++.......         ...-..+-|||.+||..++.|+++.|+.+|+.+...
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            99999998887622110         011223557777777777777777777777766554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.91  E-value=9e-06  Score=92.94  Aligned_cols=84  Identities=36%  Similarity=0.470  Sum_probs=52.3

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcC
Q 006702          103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG  182 (634)
Q Consensus       103 ~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  182 (634)
                      .|.|+||.|+..|...++++|++.|++++.+|..|.+|+|.+...|+...+..|+++ +++.+..|.+|.+||..|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccc-cccccccCccCcchhhHHhhhc
Confidence            456666666666666666666666666666666666666666666666666655554 6666666666666666665554


Q ss_pred             CHHHH
Q 006702          183 FADCI  187 (634)
Q Consensus       183 ~~~~v  187 (634)
                      +.+.+
T Consensus       734 ~~d~~  738 (785)
T KOG0521|consen  734 NADIV  738 (785)
T ss_pred             cccHH
Confidence            44433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.89  E-value=4.2e-05  Score=87.04  Aligned_cols=129  Identities=22%  Similarity=0.237  Sum_probs=106.2

Q ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHH
Q 006702           97 VNAADHTGQTALHWSAVRGAIQVAELLLRE-GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPL  175 (634)
Q Consensus        97 ~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  175 (634)
                      .......|.|.+|+++..+..-+++.+++- |......|.+|...+|++ ..++.+...+++.-.+..++.+|..|+|||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC-AALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh-hhcCCceeEEEEeecccccccccCCCCccc
Confidence            444456799999999999999999999986 666677788888889984 455556665666666899999999999999


Q ss_pred             HHHHhcCCHHHHHHHhhcCCCCC------CCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 006702          176 HWAAYKGFADCIRLLLFLDAYRG------RQDKEGCTPLHWAAIRGNLEACTVLVQA  226 (634)
Q Consensus       176 h~A~~~g~~~~v~~Ll~~ga~~~------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  226 (634)
                      |||+..|+..++..|++.|++..      ..+..|.|+--.|..+|+..+.-+|-++
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999998887653      3455789999999999999888887765

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.87  E-value=9.7e-06  Score=92.68  Aligned_cols=91  Identities=29%  Similarity=0.331  Sum_probs=82.2

Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Q 006702          168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS  247 (634)
Q Consensus       168 d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~  247 (634)
                      -..|.|+||.|+..+..-++++|++.|+++|..|..|+||||.+...|+...+..|+++|  ++.++.|.+|++|+++|.
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~--a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRG--ADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccc--ccccccCccCcchhhHHh
Confidence            346789999999999999999999999999999999999999999999999999999998  678889999999999998


Q ss_pred             hcCcHHHHHHHHH
Q 006702          248 DKNHRQVAFFLGN  260 (634)
Q Consensus       248 ~~~~~~i~~~L~~  260 (634)
                      +..+.+++-++.-
T Consensus       731 ~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  731 EAANADIVLLLRL  743 (785)
T ss_pred             hhccccHHHHHhh
Confidence            8877777766543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.84  E-value=3.6e-05  Score=70.87  Aligned_cols=65  Identities=31%  Similarity=0.438  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcC-CCCCccccCCChHHHHHHHhCCHHHHHHHHHc
Q 006702           95 GDVNAADHTGQTALHWSAVRGAIQVAELLLREG-ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK  159 (634)
Q Consensus        95 ad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~  159 (634)
                      .++|.+|..|+|||+.|+..|+.+.+.+|+.+| +++...|..|.+++.+|-..|..+++..|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            345555555555555555555555555555555 55555555555555555555555555555443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.84  E-value=3.9e-05  Score=77.48  Aligned_cols=76  Identities=26%  Similarity=0.339  Sum_probs=64.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhC
Q 006702           72 YYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG  148 (634)
Q Consensus        72 ~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g  148 (634)
                      +--|..||+.|+.+.|++|++.|.++|..|.....||.+|+..||.++|++|+++||-...-..+|... |+++.+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH
Confidence            446899999999999999999999999999999999999999999999999999999665444555544 4444443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.73  E-value=7.6e-05  Score=68.79  Aligned_cols=70  Identities=21%  Similarity=0.344  Sum_probs=64.7

Q ss_pred             CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCC
Q 006702           61 GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG-GDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV  130 (634)
Q Consensus        61 ~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g-ad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~  130 (634)
                      +.++|.+|..|+|+|+.|+..|..+.+.||+++| +++...|..|.+++.+|-+.|..++++.|.+.-.+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            3578999999999999999999999999999999 899999999999999999999999999999874443

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=96.71  E-value=0.014  Score=60.22  Aligned_cols=151  Identities=20%  Similarity=0.243  Sum_probs=95.7

Q ss_pred             cccccccccccccCCCCCCCCcchhhhhccCCcCccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 006702          374 NWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFTDPVAPSS  453 (634)
Q Consensus       374 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~rfDHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (634)
                      ...+.|.+|..-....-|||..-++||-+--|           |=.-.|++++.+..+..++.....+.........+..
T Consensus       121 ~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (309)
T COG5273         121 PRSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSL  189 (309)
T ss_pred             CCCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHH
Confidence            34789999999999999999999999998766           6677899999877777766666666666654444444


Q ss_pred             chhhhhhh---ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhh---h--hcCCCCCccCCCCHh
Q 006702          454 FGAWMSYA---STHHIGALSFLIADFSLFFGVAVLTAVQASQISRNITTNEMANALRYN---Y--LRGAGGRFRNPYDHG  525 (634)
Q Consensus       454 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~TT~E~~~~~r~~---y--~~~~~~~~~npyd~G  525 (634)
                      ....+-..   .....+++..+++....+.++..++..+.+.+.++.++-|.....|+.   +  ..+ ......|++.|
T Consensus       190 ~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~  268 (309)
T COG5273         190 AICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNLPFTNIFD-SSEGALPLDLG  268 (309)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccCCcCceeccC-CCccccccccC
Confidence            31111110   000011111112222233445567888999999999999976655554   1  111 11245677777


Q ss_pred             HHhHHHHhccc
Q 006702          526 CKRNCSDFLIN  536 (634)
Q Consensus       526 ~~~N~~~f~~~  536 (634)
                      .-+|+..++..
T Consensus       269 ~~~~~~~i~~~  279 (309)
T COG5273         269 IGQNLSTIKGS  279 (309)
T ss_pred             ccccceeecCC
Confidence            77777766643

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.24  E-value=0.0047  Score=65.08  Aligned_cols=63  Identities=24%  Similarity=0.252  Sum_probs=44.6

Q ss_pred             CHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHH
Q 006702           83 RTAAAQYIIEHGGDVNA------ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAA  145 (634)
Q Consensus        83 ~~~~v~~Ll~~gad~n~------~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa  145 (634)
                      -.+.+++|.+++.+.|.      .+..-.|+||+|+..|..++|.+||+.|+|+..+|..|.||..+++
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            35667777777766543      2233567778877777777777777777777777777777777766

>smart00248 ANK ankyrin repeats

Probab=96.22  E-value=0.008  Score=37.01  Aligned_cols=26  Identities=46%  Similarity=0.759  Sum_probs=12.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCC
Q 006702          104 GQTALHWSAVRGAIQVAELLLREGAR  129 (634)
Q Consensus       104 g~tpLh~A~~~g~~~iv~~Ll~~gad  129 (634)
                      |.||+|+|+..++.++++.|++.|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34455555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.17  E-value=0.0085  Score=36.88  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=24.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEHGGDVN   98 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n   98 (634)
                      .|.||+|+|+..++.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36789999999999999999999887664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.34  E-value=0.028  Score=59.51  Aligned_cols=71  Identities=24%  Similarity=0.251  Sum_probs=54.3

Q ss_pred             HHHHHHcCC-HHHHHHHHhccCCCCcC------CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 006702           41 VYTAAAYGD-LEKLQRLVECEGCSVSE------PDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSA  112 (634)
Q Consensus        41 L~~Aa~~g~-~~~v~~Ll~~~~~~~~~------~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~  112 (634)
                      +..-.+.+. .+.+++|.+ ++++.|.      .+..--|+||+|+..|..++|.+||+.|+|+..+|..|.||...+.
T Consensus       394 i~s~lkk~~~p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  394 IISRLKKKPEPDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             HHHHHhccCchhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            333334443 556666666 5555442      2344568999999999999999999999999999999999999887

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.26  E-value=0.55  Score=43.87  Aligned_cols=44  Identities=18%  Similarity=0.037  Sum_probs=27.4

Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 006702          175 LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV  224 (634)
Q Consensus       175 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  224 (634)
                      |.+|+.+|....+...+++|.+++.      ++|-.|++.++..|+.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            5566666666666666666665543      5666666666666666654

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.78  E-value=0.27  Score=47.20  Aligned_cols=114  Identities=17%  Similarity=0.184  Sum_probs=82.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcC----CCCCCCCCCCCcHHHHHHH--
Q 006702           40 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG----GDVNAADHTGQTALHWSAV--  113 (634)
Q Consensus        40 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g----ad~n~~~~~g~tpLh~A~~--  113 (634)
                      .|..|+..-+++.+..++...      .  .-.++|-+|..++..+++-+|+.+-    .|+-.. ..+.--+-++..  
T Consensus       156 sledAV~AsN~~~i~~~VtdK------k--dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h  226 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK------K--DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEH  226 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch------H--HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhc
Confidence            377899999999998888722      2  2357888999999999999999752    122111 112234445443  


Q ss_pred             hCCHHHHHHHHhcC-CCCCc---cccCCChHHHHHHHhCCHHHHHHHHHccCCC
Q 006702          114 RGAIQVAELLLREG-ARVNA---ADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD  163 (634)
Q Consensus       114 ~g~~~iv~~Ll~~g-ad~~~---~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~  163 (634)
                      +.+..++++++++| +++|.   +-..|.|.|.-|..+++.+++..||.. |+-
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~-GA~  279 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKY-GAI  279 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHc-Ccc
Confidence            34678999999998 56654   457899999999999999999999976 663

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.54  E-value=0.54  Score=45.17  Aligned_cols=119  Identities=18%  Similarity=0.097  Sum_probs=79.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHH
Q 006702           74 ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL  153 (634)
Q Consensus        74 ~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v  153 (634)
                      .|--|+...+++.+.-++...-       .-.++|-+|+.++..+++.+|+.+= .....|        .|.......-+
T Consensus       156 sledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~f-~ft~~d--------v~~~~~~~ydi  219 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSKF-NFTKQD--------VASMEKELYDI  219 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhhc-ceecch--------hhhcCcchhhH
Confidence            4778898889988887775321       2357889999999999999998751 111122        22222234456


Q ss_pred             HHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC-CCCCC---CCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 006702          154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD-AYRGR---QDKEGCTPLHWAAIRGNLEACTVLVQAGK  228 (634)
Q Consensus       154 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-a~~~~---~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~  228 (634)
                      +|+|+..++                    +..++++.+++| +++|.   +-+.|.|-|.-|++.++.+++..||++|+
T Consensus       220 eY~LS~h~a--------------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  220 EYLLSEHSA--------------------SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHhhcCC--------------------cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            666665333                    345667777776 45554   34567888888888888888888888885

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.68  E-value=0.69  Score=43.46  Aligned_cols=62  Identities=19%  Similarity=0.365  Sum_probs=47.0

Q ss_pred             cccccccccccccCCCCCCCCcchhhhhccCCcCccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006702          374 NWSQLCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWDFFLFLVLEVSAMLVTGAVTVIRVFT  446 (634)
Q Consensus       374 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~rfDHHCpwv~ncIG~~N~r~F~~fl~~~~~~~~~~~~~~~~~~~~  446 (634)
                      ...+.|..|+.-...+-|||..-+.||.+--|           +-+-.|+++.....+..++.....+.....
T Consensus        60 ~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~  121 (174)
T PF01529_consen   60 PRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSLYYLVRYIP  121 (174)
T ss_pred             CcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34689999999999999999999999998776           556688888876666665555554444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=88.95  E-value=2.5  Score=39.64  Aligned_cols=139  Identities=15%  Similarity=0.126  Sum_probs=93.7

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI  117 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~  117 (634)
                      .-.|..|++.+-+.++++.-+.-.    ..-...++....||+..+.|+|+|+-++   +..  .+-.+-+-.|....+.
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~----~~~~~~q~LFElAC~~qkydiV~WI~qn---L~i--~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLE----NERYLNQELFELACEEQKYDIVKWIGQN---LHI--YNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhh----cchhHHHHHHHHHHHHccccHHHHHhhc---cCC--CCchhhhhhhhhccch
Confidence            445778999999999999877211    1123567899999999999999999443   211  1223456688888887


Q ss_pred             HHH----HHHHhcCCCCCcccc--CCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHh
Q 006702          118 QVA----ELLLREGARVNAADM--YGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL  191 (634)
Q Consensus       118 ~iv----~~Ll~~gad~~~~d~--~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  191 (634)
                      ++.    +++.++...-...|.  --..-|..|+..|-...+...++. |.+++.      ++|..|+..++-.++.+++
T Consensus       118 sLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlky-gg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKY-GGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             hHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHc-CCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            763    233343221101110  001346789999999999888877 666554      7999999999999998876


Q ss_pred             h
Q 006702          192 F  192 (634)
Q Consensus       192 ~  192 (634)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            4

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.47  E-value=1  Score=35.99  Aligned_cols=46  Identities=9%  Similarity=0.273  Sum_probs=21.4

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHc
Q 006702          107 ALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK  159 (634)
Q Consensus       107 pLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~  159 (634)
                      .+..|+.+|+.+|++.+++.+ .++      ...+..|+...+.+++++|+++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            344555555555555554433 111      2345555555555555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.29  E-value=1.9  Score=34.44  Aligned_cols=46  Identities=11%  Similarity=0.276  Sum_probs=22.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 006702           74 ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLRE  126 (634)
Q Consensus        74 ~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~  126 (634)
                      .+..|+..|+.|+++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            445555555555555555432 111      2345555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	634
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-23
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-21
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-21
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-20
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-16
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-20
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-19
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-11
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		9e-19
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-19
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-12
1uoh_A	226	Human Gankyrin Length = 226		7e-17
1uoh_A	226	Human Gankyrin Length = 226		3e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-12
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		9e-17
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-15
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-16
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-13
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-16
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-13
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-15
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-12
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-15
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-15
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-15
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-12
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-15
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-15
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-15
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-11
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		9e-12
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		8e-14
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-14
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-13
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-13
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-13
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-12
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-12
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-11
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-11
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-05
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-11
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-11
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-11
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-11
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		6e-11
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-10
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-10
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-10
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-10
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-10
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		6e-10
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		7e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		7e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		8e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		7e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		6e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		8e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		5e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		6e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		7e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		7e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		9e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		8e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		6e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-04
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		2e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		3e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-04
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		4e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		4e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		6e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-04

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 17/201 (8%)
Query: 40  DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYII-------E 92
           D+  A  YG  E+ + LVE  G  V +PD      L WAA+NNR    +Y I       +
Sbjct: 12  DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 93  HGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF 152
            GGD+N+      T LHW+  +G + +   L++ GA  +  D  G    H+AAQ+G T+ 
Sbjct: 71  LGGDLNS------TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI 124
Query: 153 LYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA-DCIRLLLFLDAYRGRQDK-EGCTPLHW 210
           + ++++K   D D+ D +G +PL WAAY+  + D  RLLL  +      DK    T LHW
Sbjct: 125 VAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Query: 211 AAIRGNLEACTVLVQAGKKED 231
           A + GN    ++L++AG   D
Sbjct: 184 AVLAGNTTVISLLLEAGANVD 204

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 35/162 (21%)
Query: 90  IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
           ++E G DV   D    T LHW+A+   I + +  + +GA                     
Sbjct: 28  LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA--------------------- 66
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
                 IV +   D +       +PLHWA  +G    +  L+   A     D EGC+ +H
Sbjct: 67  ------IVDQLGGDLN------STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIH 114
Query: 210 WAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 251
            AA  G+      L+  G+  D+M  D  G+TP   A+ + H
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMM--DQNGMTPLMWAAYRTH 154

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA N      + +IE+G DVNA+D  G+T LH++A  G  ++ +LL+ +GA VNA D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H AA+ G    +  ++SK  AD +  D+DGR+PLH+AA +G  + ++LL+   A  
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISK-GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
              D +G TPL  A   GN E   +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D+DGR+PLH+AA +G  + ++LL+   A    +D +G TPLH+AA  G+ E   
Sbjct: 28  ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPI 275
           +L+  G   D+   D+ G TP   A+ + H++ V   +     +     DG +P+
Sbjct: 88  LLISKGA--DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPL 140

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA N      + ++E+G D NA+D  G+T LH++A  G  ++ +LLL +GA  NA D  G
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H AA+ G    +  ++SK  ADP+  D+DGR+PLH+AA  G  + ++LLL   A  
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
              D +G TPL  A   GN E   +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           ADP+  D+DGR+PLH+AA  G  + ++LLL   A    +D +G TPLH+AA  G+ E   
Sbjct: 28  ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVK 87
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNS 273
           +L+  G   D    D+ G TP   A++  H+++       + LL K  D N+
Sbjct: 88  LLLSKGA--DPNAKDSDGRTPLHYAAENGHKEI------VKLLLSKGADPNT 131

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA N      + ++E+G DVNA+D  G+T LH +A  G  +V +LLL +GA  NA D  G
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H+AA+ G    +  ++S+  ADP+  D+DG++PLH AA  G  + ++LLL   A  
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
              D +G TPL  A   GN E   +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 123 LLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG 182
           LL  GA VNA+D  G    H+AA+ G    +  ++S+  ADP+  D+DG++PLH AA  G
Sbjct: 23  LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENG 81
Query: 183 FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP 242
             + ++LLL   A    +D +G TPLH AA  G+ E   +L+  G   D   +D+ G TP
Sbjct: 82  HKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA--DPNTSDSDGRTP 139
Query: 243 AQLASDKNHRQVAFFL 258
             LA +  + +V   L
Sbjct: 140 LDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA N      + +IE+G DVNA+D  G+T LH +A  G  +V +LL+ +GA VNA D  G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H AA+ G    +  ++SK  AD +  D+DGR+PLH AA  G  + ++LL+   A  
Sbjct: 71  RTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
              D +G TPL  A   GN E   +L + G
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D+DGR+PLH AA  G  + ++LL+   A    +D +G TPLH AA  G+ E   
Sbjct: 28  ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 87
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA-FFLGNARRLLDKRCDGNSPI 275
           +L+  G   D+   D+ G TP   A++  H++V    +     +     DG +P+
Sbjct: 88  LLISKGA--DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Query: 75  LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           L  AA   +    + +I +G DVNA D+TG T LH +AV G +++ E+LL+ GA V+AAD
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 135 MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD 194
           +YG+   H+AA  G    +  ++ K+ AD +  D  G +PLH AA +G  + + +LL   
Sbjct: 78  VYGFTPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 195 AYRGRQDKEGCTPLHWAAIRGN 216
           A    QDK G T    +   GN
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGN 158

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G    H+AA  G    +  ++ K  AD D  D  G +PLH AA  
Sbjct: 32  ILIANGADVNAVDNTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMT 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D  G TPLH AA  G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVA 255
              ++ D  +  +A
Sbjct: 149 AFDISIDNGNEDLA 162

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
            G+T LH +A  G ++V +LLL  GA VNA D  G    H+AA+ G    +  ++ +  A
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGA 59
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
           D +  D +GR+PLH AA  G  + ++LLL   A    +DK G TPLH AA  G+LE   +
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 223 LVQAG 227
           L++AG
Sbjct: 120 LLEAG 124

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
           +GR+PLH AA  G  + ++LLL   A    +DK G TPLH AA  G+LE   +L++AG  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58
Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            D+   D  G TP  LA+   H +V   L
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D  G T LH +A  G +++ E+LL+ GA VNA D  G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
           Y   H+AA+ G    +  ++ K  AD +  D DG +PLH AA +G  + + +LL   A  
Sbjct: 69  YTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
             QDK G TP   A   GN +   VL +A 
Sbjct: 128 NAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  GY   H+AA+ G    +  ++ K  AD +  D DG +PLH AA +
Sbjct: 20  ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A    +DK+G TPLH AA  G+LE   VL++AG   D+   D  G T
Sbjct: 79  GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDKFGKT 136
Query: 242 PAQLASDKNHRQVAFFLGNA 261
           P  LA D  +  +A  L  A
Sbjct: 137 PFDLAIDNGNEDIAEVLQKA 156

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 88  QYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY 147
           + ++ +G DVNAAD+TG T LH +A  G +++ E+LL+ GA V+A+D++GY   H+AA +
Sbjct: 31  RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP 207
           G    +  ++ K  AD +  D+DG +PLH AA  G+ + + +LL   A    QDK G T 
Sbjct: 91  GHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 208 LHWAAIRGNLEACTVL 223
              +   GN +   +L
Sbjct: 150 FDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNAAD  G    H+AA  G    +  ++ K  AD D  D  G +PLH AAY 
Sbjct: 32  ILMANGADVNAADNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D +G TPLH AA  G LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D  G T LH +A  G +++ E+LL+ GA VNA D  G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
           Y   H+AA+ G    +  ++ K  AD +  D DG +PLH AA +G  + + +LL   A  
Sbjct: 69  YTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
             QDK G TP   A   G+ +   VL +A 
Sbjct: 128 NAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  GY   H+AA+ G    +  ++ K  AD +  D DG +PLH AA +
Sbjct: 20  ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A    +DK+G TPLH AA  G+LE   VL++AG   D+   D  G T
Sbjct: 79  GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDKFGKT 136
Query: 242 PAQLASDKNHRQVAFFLGNA 261
           P  LA  + H  +A  L  A
Sbjct: 137 PFDLAIREGHEDIAEVLQKA 156

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Query: 75  LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           L  AA   +    + ++ +G DVNA D+ G T LH +A  G +++ E+LL+ GA VNA+D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 135 MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD 194
           + G    H+AA  G    +  ++ K  AD +  DNDG +PLH AA  G  + + +LL   
Sbjct: 78  LTGITPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 195 AYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
           A    QDK G T    +   GN +   +L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  GY   H+AA  G    +  ++ K  AD +  D  G +PLH AA  
Sbjct: 32  ILMANGADVNATDNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAAT 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D +G TPLH AA  G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 48  GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
           G LE+L+  +  +    +  D     AL WA     T   +++++ G  VN  D  G + 
Sbjct: 17  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
           LH +A  G  ++ + LL +GA+VNA +  G    H AA   +      ++ +  A+PD  
Sbjct: 77  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           D+   + +H AA KG    I +LL+  A    QD EG TPLH A     +E   +LV  G
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 228 KKEDLMVTDNTGLTPAQLA 246
               + + +    TP Q+A
Sbjct: 196 A--SIYIENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           D D R+ LHWA   G  + +  LL L      +D  G +PLH AA  G  E    L+  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--G 94
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           K   +   +  G TP   A+ KN  ++A  L
Sbjct: 95  KGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D +G+T LH +A++G +++ E+LL+ GA VNAAD  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H+AA YG    +  ++ K  AD +  D  G +PLH AA  G  + + +LL   A  
Sbjct: 81  DTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D+ G++PLH AA KG  + + +LL   A     DK G TPLH AA+ G+LE   
Sbjct: 38  ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
           VL++ G   D+  TD  G TP  LA+D  H ++
Sbjct: 98  VLLKNGA--DVNATDTYGFTPLHLAADAGHLEI 128

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 3/199 (1%)
Query: 48  GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
           G LE+L+  +  +    +  D     AL WA     T   +++++ G  VN  D  G + 
Sbjct: 18  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 77
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
           LH +A  G  ++ + LL +GA+VNA +  G    H AA   +      ++ +  A+PD  
Sbjct: 78  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 136
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           D+   + +H AA KG    I +LL+  A    QD EG TPLH A     +E   +LV  G
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196
Query: 228 KKEDLMVTDNTGLTPAQLA 246
               + + +    TP Q+A
Sbjct: 197 A--SIYIENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           D D R+ LHWA   G  + +  LL L      +D  G +PLH AA  G  E    L+  G
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--G 95
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           K   +   +  G TP   A+ KN  ++A  L
Sbjct: 96  KGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D  G T LH +A  G +++ E+LL+ GA VNA D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
           Y   H+AA+ G    +  ++ K  AD +  D DG +PLH AA +G  + + +LL   A  
Sbjct: 81  YTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  GY   H+AA+ G    +  ++ K  AD +  D DG +PLH AA +
Sbjct: 32  ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAARE 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A    +DK+G TPLH AA  G+LE   VL++AG   D+   D  G T
Sbjct: 91  GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Query: 48  GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
           G L++L+  +  +    +  D     AL WA     T   +++++ G  VN  D  G + 
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
           LH +A  G  ++ + LL +GA VNA +  G    H AA   +      ++ +  A+PD  
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           D+   + +H AA KG    + +LLF  A    QD EG TPLH A     +E    LV  G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 228 KKEDLMVTDNTGLTPAQLAS 247
               + + +    TP Q+A 
Sbjct: 196 AS--IYIENKEEKTPLQVAK 213

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           D D R+ LHWA   G  + +  LL L      +D  G +PLH AA  G  E    L+  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
               +   +  G TP   A+ KN  ++A  L
Sbjct: 97  AH--VNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 70  LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
           LG   L+ AA   R    + ++ +G DVNAAD  G T LH +A  G +++ E+LL+ GA 
Sbjct: 14  LGKKLLE-AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
           VNA D  G    H+AA +G    +  ++ K  AD +  D++G +PLH AA +G  + + +
Sbjct: 73  VNAYDTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEV 131
Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
           LL   A    QDK G T    +   GN +   +L
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 73/137 (53%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNAAD+ G+   H+AA +G    +  ++ K  AD +  D  G +PLH AA+ 
Sbjct: 32  ILMANGADVNAADVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHF 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A    +D  G TPLH AA RG+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ +  +  +A  L
Sbjct: 149 AFDISINNGNEDLAEIL 165

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Query: 48  GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
           G L++L+  +  +    +  D     AL WA     T   +++++ G  VN  D  G + 
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP 167
           LH +A  G  ++ + LL +GA VNA +  G    H AA   +      ++ +  A+PD  
Sbjct: 77  LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           D+   + +H AA KG    + +LLF  A    QD EG TPLH A     +E    LV  G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 228 KKEDLMVTDNTGLTPAQLAS 247
               + + +    TP Q+A 
Sbjct: 196 A--SIYIENKEEKTPLQVAK 213

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           D D R+ LHWA   G  + +  LL L      +D  G +PLH AA  G  E    L+  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
               +   +  G TP   A+ KN  ++A  L
Sbjct: 97  AH--VNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D  G T LH +A  G +++ E+LL+ GA VNA D YG
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H+AA  G    +  ++ K  AD +  D +G +PLH AAY G  + + +LL   A  
Sbjct: 81  ATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G+   H+AA+ G    +  ++ K+ AD +  DN G +PLH AA  
Sbjct: 32  ILMANGADVNATDWLGHTPLHLAAKTGHLEIV-EVLLKYGADVNAWDNYGATPLHLAADN 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A    +D EG TPLH AA  G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G+  L  AA N      + ++++G DVNA DH G T L  +A+ 
Sbjct: 31  RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
           G +++ E+LL+ GA VNA DM G+   H+AA +G    +  ++ K  AD +  D  G++ 
Sbjct: 91  GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE-IVEVLLKNGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
              +   G  D   +L
Sbjct: 150 FDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G+   H+AA  G    +  ++ K  AD +  D+ G +PL  AA  
Sbjct: 32  ILMANGADVNAEDASGWTPLHLAAFNGHLE-IVEVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D EG TPLH AA+ G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G D NA DH G+T LH +A  G +++ E+LLR GA VNA D  G
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H+AA  G    +  ++ K+ AD +  D  G +PL+ AAY G  + + +LL   A  
Sbjct: 69  TTPLHLAASLGHLEIV-EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA  NA D YG    H+AA  G    +  ++ +  AD +  D +G +PLH AA  
Sbjct: 20  ILMANGADANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASL 78
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A    +D  G TPL+ AA  G+LE   VL++ G   D+   D  G T
Sbjct: 79  GHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA--DVNAQDKFGKT 136
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 137 AFDISIDIGNEDLAEIL 153

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 88  QYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY 147
           + ++ +G DVNA+DH G T LH +A  G +++ E+LL+ GA VNA D  G    H+AA  
Sbjct: 31  RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADR 90
Query: 148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP 207
           G    +  ++ K  AD +  D++G +PLH AA  G  + + +LL   A    QDK G T 
Sbjct: 91  GHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 208 LHWAAIRGNLEACTVL 223
              +   GN +   +L
Sbjct: 150 FDISIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA+D  G+   H+AA +G    +  ++ K  AD +  D+ G +PLH AA +
Sbjct: 32  ILMANGADVNASDHVGWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D  G TPLH AA  G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           ++ A  + +L+ + +L+   G S   P   GY  L  AA  N+   A+ ++++GG  NA 
Sbjct: 183 LHVAVHHNNLD-IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
              G T LH +A  G  ++  LLL + A  N  +  G    H+ AQ G    +  ++ K 
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP-VADVLIKH 300
Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
               D     G +PLH A++ G    ++ LL   A    + K G +PLH AA +G+ +  
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLA 246
           T+L++ G   + + +D  G TP  +A
Sbjct: 361 TLLLKNGASPNEVSSD--GTTPLAIA 384

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 14/271 (5%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLG---YYALQWAALNNRTAAAQYIIEHGGDV 97
           ++ AA YG +   + L+E +    + P+  G      L  A  +N     + ++  GG  
Sbjct: 150 LHVAAKYGKVRVAELLLERD----AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
           ++    G T LH +A +  ++VA  LL+ G   NA  + G    H+AAQ G    +  ++
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 265
Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
           SK  A+ ++ +  G +PLH  A +G      +L+          + G TPLH A+  GN+
Sbjct: 266 SKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI 324
Query: 218 EACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKRCDGNSPIG 276
           +    L+Q   + D+      G +P   A+ + H   V   L N     +   DG +P+ 
Sbjct: 325 KLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382
Query: 277 KISKLGLAPALWCVILLMLVTYMHSVIMASN 307
              +LG    +    +L +VT   S ++ S+
Sbjct: 383 IAKRLGY---ISVTDVLKVVTDETSFVLVSD 410

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 5/217 (2%)
Query: 32  VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYII 91
           ++ ++ R+ ++ AA  G ++    LV+  G ++          L  AA NN   A +Y+I
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 92  EHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQT 150
           + G  V+  D  G T LH +A +G  +V + LL  G   VN  D  G+     A +Y   
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
             +  ++SK  +D ++ DN+    LHWAA+ G  D   +LL         +  G +PLH 
Sbjct: 125 DLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
           AA R N   C VL    +  D+ + +  G TP Q AS
Sbjct: 184 AA-RENRYDCVVLF-LSRDSDVTLKNKEGETPLQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 3/187 (1%)
Query: 90  IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
           +++ G +++      +T L  +A    ++  + L++ GA V+  D  G    H+AA+ G 
Sbjct: 30  LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH 89
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
              + +++S    D +  D+ G +P+ WA      D ++LLL   +    +D E    LH
Sbjct: 90  YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH 149
Query: 210 WAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ-VAFFLGNARRLLDKR 268
           WAA  G ++   +L+ A  K DL   +  G +P  +A+ +N    V  FL     +  K 
Sbjct: 150 WAAFSGCVDIAEILLAA--KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207
Query: 269 CDGNSPI 275
            +G +P+
Sbjct: 208 KEGETPL 214

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Query: 29  GVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQ 88
           G+ +        +  AA  GD+E +++L   +  +  + +G     L +AA  NR +  +
Sbjct: 4   GISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 89  YIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
           Y+++HG DV+A D  G   LH +   G  +VAELL++ GA VN AD++ +   H AA  G
Sbjct: 64  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPL 175
           +      ++ +  ADP   + DG +PL
Sbjct: 124 KYEIC-KLLLQHGADPTKKNRDGNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 130 VNAADMYGYQTT--HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
           VN  D+ G Q+T  H AA Y + + + +++ +  AD    D  G  PLH A   G  +  
Sbjct: 37  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
            LL+   A     D    TPLH AA +G  E C +L+Q G   D    +  G TP  L  
Sbjct: 96  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG--ADPTKKNRDGNTPLDLVK 153
Query: 248 DKNHRQVAFFLGNARRLLD 266
           D +        G+A  LLD
Sbjct: 154 DGDTDIQDLLRGDA-ALLD 171

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AA  GD+E +++L   +  +  + +G     L +AA  NR +  +Y+++HG DV+A D  
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G   LH +   G  +VAELL++ GA VN AD++ +   H AA  G+      ++ +  AD
Sbjct: 75  GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC-KLLLQHGAD 133
Query: 164 PDVPDNDGRSPL 175
           P   + DG +PL
Sbjct: 134 PTKKNRDGNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 130 VNAADMYGYQTT--HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
           VN  D+ G Q+T  H AA Y + + + +++ +  AD    D  G  PLH A   G  +  
Sbjct: 33  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
            LL+   A     D    TPLH AA +G  E C +L+Q G   D    +  G TP  L  
Sbjct: 92  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 149
Query: 248 DKNHRQVAFFLGNA 261
           D +        G+A
Sbjct: 150 DGDTDIQDLLRGDA 163

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AA  GD+E +++L   +  +  + +G     L +AA  NR +  +Y+++HG DV+A D  
Sbjct: 17  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G   LH +   G  +VAELL++ GA VN AD++ +   H AA  G+      ++ +  AD
Sbjct: 77  GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC-KLLLQHGAD 135
Query: 164 PDVPDNDGRSPL 175
           P   + DG +PL
Sbjct: 136 PTKKNRDGNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 130 VNAADMYGYQTT--HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
           VN  D+ G Q+T  H AA Y + + + +++ +  AD    D  G  PLH A   G  +  
Sbjct: 35  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
            LL+   A     D    TPLH AA +G  E C +L+Q G   D    +  G TP  L  
Sbjct: 94  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 151
Query: 248 DKNHRQVAFFLGNA 261
           D +        G+A
Sbjct: 152 DGDTDIQDLLRGDA 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D TG T LH +A  G +++ E+LL+ GA VNA D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H+AA+ G    +  ++ K  AD +  D+ G +PLH AA +G  + + +LL   A  
Sbjct: 81  VTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G+   H+AA +G    +  ++ K  AD +  D+ G +PLH AA +
Sbjct: 32  ILMANGADVNARDFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D  G TPLH AA RG+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D  G T LH +A  G +++ E+LL+ GA VNA D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H+AA+ G    +  ++ K+ AD +  D  G +PLH AA  G  + + +LL   A  
Sbjct: 81  STPLHLAAKRGHLEIV-EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D YG    H+AA+ G    +  ++ K  AD +  D  G +PLH AA +
Sbjct: 32  ILMANGADVNAEDTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D  G TPLH AA  G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D +G T LH +A  G +++ E+LL+ GA VNA D+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H+AA  G    +  ++ K  AD +  D  G +PLH AA  G  + + +LL   A  
Sbjct: 81  STPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G    H+AA YG    +  ++ K  AD +  D  G +PLH AA  
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALI 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D  G TPLH AAI G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D +G T LH +A  G +++ E+LL+ GA VNA D+ G
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
               H+AA  G    +  ++ K  AD +  D  G +PLH AA  G  + + +LL   A  
Sbjct: 81  STPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G    H+AA YG    +  ++ K  AD +  D  G +PLH AA  
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALI 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D  G TPLH AAI G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 4/192 (2%)
Query: 68  DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREG 127
           D  G  +L  AA   R  AA+ +++ G D N+ D+TG+T LH +    A+ V ++LLR  
Sbjct: 48  DKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 107
Query: 128 A-RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADC 186
           A  +NA    G     +AA+      +  +++  +AD +  DN G++ LHWAA     + 
Sbjct: 108 ATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEA 166
Query: 187 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
           + +LL   A R  QD +  TPL  AA  G+ EA   L+      +  +TD+    P  +A
Sbjct: 167 VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE--ITDHMDRLPRDVA 224
Query: 247 SDKNHRQVAFFL 258
           S++ H  +   L
Sbjct: 225 SERLHHDIVRLL 236

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 70  LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
           LG   L+ AA   +    + ++ +G DVNA D  G T LH +A  G  ++ E+LL+ GA 
Sbjct: 14  LGKKLLE-AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
           VNA D  G+   H+AA  G    +  ++ K+ AD +  D  G +PLH AA +G  + + +
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIV-EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEV 131
Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
           LL   A    QDK G T    +   GN +   +L
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G    H+AA  G    +  ++ K  AD +  D DG +PLH AA  
Sbjct: 32  ILMANGADVNAHDDQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADN 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A    QD  G TPLH AA RG+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G    H+AA  GQ   +  ++ K  AD +  D+ G +PLH AAY 
Sbjct: 24  ILMANGADVNATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D+ G TPLH AA+ G LE   VL++ G   D+   D  GLT
Sbjct: 83  GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA--DVNAQDALGLT 140
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ ++    +A  L
Sbjct: 141 AFDISINQGQEDLAEIL 157

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G   L     N      + ++++  DVNA+D +G T LH +A R
Sbjct: 31  RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYR 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
           G +++ E+LL+ GA VNA D  GY   H+AA+ G    +  ++ K+ AD +  D  G++ 
Sbjct: 91  GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIV-EVLLKYGADVNAQDKFGKTA 149
Query: 175 LHWAAYKGFADCIRLL 190
              +   G  D   +L
Sbjct: 150 FDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D +G    H+    G    +  ++ K+ AD +  D  G +PLH AAY+
Sbjct: 32  ILMANGADVNANDWFGITPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYR 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
           G  + + +LL   A     D +G TPLH AA  G+LE   VL++ G   D+   D  G T
Sbjct: 91  GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 242 PAQLASDKNHRQVAFFL 258
              ++ D  +  +A  L
Sbjct: 149 AFDISIDNGNEDLAEIL 165

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 27/208 (12%)
Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A + GD E++ RL+E  G  ++  +  G  AL  A +++     ++++E+G ++N  D+ 
Sbjct: 47  ACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHV-------------------- 143
           G   LH +A  G + +AE L+ +GA V A +  G     +                    
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165
Query: 144 --AAQYGQTAFLYHIVSKWNADPDVPD----NDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
             AA+  +   +     +W     + D      G + LH AA KG+ + ++LL+      
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
             +D +G TPLH AA  G  EAC +LV+
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVE 253

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60  EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
           +G S+ ++ D  G  AL  AA  +R+ AA+ ++E   D N  D+ G+T LH +    A  
Sbjct: 45  QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 119 VAELLLREGARVNAADMYGYQTTHV-AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
           V ++L+R  A    A M+   T  + AA+      L  +++  +AD +  D+ G+S LHW
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHW 163
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA     D   +LL   A +  Q+    TPL  AA  G+ E   VL+      D  +TD+
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDH 221
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
               P  +A ++ H  +   L
Sbjct: 222 MDRLPRDIAQERMHHDIVRLL 242

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
            G+T LH +A  G ++V +LLL  GA VNA D  G    H+AA+ G    +  ++ +  A
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGA 59
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
           D +  D +GR+PLH AA  G  + ++LLL   AY
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
           +GR+PLH AA  G  + ++LLL   A    +DK G TPLH AA  G+LE   +L++AG  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58
Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            D+   D  G TP  LA+   H +V   L
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 31  VVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYI 90
           V+  E  ++++  AA  G+ EKL  L+     +    DG     L  AA  NR    Q +
Sbjct: 18  VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77
Query: 91  IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
           ++HG DV+A D  G   LH +   G  +V ELLL+ GA VNA D++ +   H AA   + 
Sbjct: 78  LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWA 178
                ++S   ADP + +  G+S +  A
Sbjct: 138 EVCSLLLS-HGADPTLVNCHGKSAVDMA 164

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           ++ A +YG  E  + L++   C V+  D   +  L  AA  NR      ++ HG D    
Sbjct: 95  LHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 101 DHTGQTALHWSAV-------------RGAIQVA-ELLLREGARVNAADMYGYQT--THVA 144
           +  G++A+  +                  +Q A E  L +  +  A ++  ++   +H  
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213
Query: 145 AQYGQTAFLY-------HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
           A +   A L+        ++ +  A+ +  + D  +PLH AA +   D + +L    A  
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD 248
              D  G T LH AA+ G+L+ C +L+  G   D  +    G T AQ+ ++
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYG--SDPSIISLQGFTAAQMGNE 322

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60  EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
           +G S+ ++ D  G  AL  AA  +R+ AA+ ++E   D N  D+ G+T LH +    A  
Sbjct: 45  QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 119 VAELLLREGARVNAADMYGYQTTHV-AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
           V ++L+R  A    A M+   T  + AA+      L  +++  +AD +  D+ G+S LHW
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHW 163
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA     D   +LL   A +  Q+    TPL  AA  G+ E   VL+      D  +TD+
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDH 221
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
               P  +A ++ H  +   L
Sbjct: 222 MDRLPRDIAQERMHHDIVRLL 242

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60  EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
           +G S+ ++ D  G  AL  AA  +R+ AA+ ++E   D N  D+ G+T LH +    A  
Sbjct: 46  QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 105
Query: 119 VAELLLREGARVNAADMYGYQTTHV-AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
           V ++L+R  A    A M+   T  + AA+      L  +++  +AD +  D+ G+S LHW
Sbjct: 106 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHW 164
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA     D   +LL   A +  Q+    TPL  AA  G+ E   VL+      D  +TD+
Sbjct: 165 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDH 222
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
               P  +A ++ H  +   L
Sbjct: 223 MDRLPRDIAQERMHHDIVRLL 243

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60  EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
           +G S+ ++ D  G  AL  AA  +R+ AA+ ++E   D N  D+ G+T LH +    A  
Sbjct: 13  QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72
Query: 119 VAELLLREGARVNAADMYGYQTTHV-AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
           V ++L+R  A    A M+   T  + AA+      L  +++  +AD +  D+ G+S LHW
Sbjct: 73  VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHW 131
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA     D   +LL   A +  Q+    TPL  AA  G+ E   VL+      D  +TD+
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDH 189
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
               P  +A ++ H  +   L
Sbjct: 190 MDRLPRDIAQERMHHDIVRLL 210

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D +G   L  AA+N+     + ++++G DVNA D  G+T LH  A+ 
Sbjct: 31  RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMY 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
           G +++ E+LL+ GA VNA D +G     ++   G    L  I+ K N
Sbjct: 91  GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D  G +PLH AA     + + +LL   A     D  G TPLH  A+ G+LE   
Sbjct: 38  ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           VL++ G   D+   D  G T   ++ D  +  +A  L
Sbjct: 98  VLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 5/201 (2%)
Query: 60  EGCSV-SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
           +G S+ ++ D  G  AL  AA  +R+ AA+ ++E   D    D+ G+T LH +    A  
Sbjct: 10  QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQG 69
Query: 119 VAELLLREGARVNAADMY-GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
           V ++LLR  A    A M+ G     +AA+      L  +++  +AD +  D+ G+S LHW
Sbjct: 70  VFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS-HADVNAVDDLGKSALHW 128
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA     D   +LL   A +  Q+ +  TPL  AA  G+ E   VL+      D  +TD+
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRD--ITDH 186
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
               P  +A ++ H  +   L
Sbjct: 187 MDRLPRDIAQERMHHDIVRLL 207

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGL---GYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           AAA GD+++++RL+  E   +  PD L   G  ALQ     + TA A  +++ G   N  
Sbjct: 15  AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQ 70
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
           D +G + +H +A  G +   ++L+  GA VN  D  G    H+A Q G TA    +VS  
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA----VVSFL 126
Query: 161 NADPDVPDNDGR--SPLHWAAYKGFADCIRLL 190
            A+ D+   D R  +PL  A  +G  D + +L
Sbjct: 127 AAESDLHRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 108 LHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV 166
           L  +A RG +Q V  LL RE    +A + +G     V   +G TA    ++ K  A P+V
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL-KQGASPNV 69
Query: 167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
            D  G SP+H AA  GF D +++L+   A     D  G  P+H A   G+    + L   
Sbjct: 70  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--- 126
Query: 227 GKKEDLMVTDNTGLTPAQLA 246
             + DL   D  GLTP +LA
Sbjct: 127 AAESDLHRRDARGLTPLELA 146

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGL---GYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           AAA GD+++++RL+  E   +  PD L   G  ALQ     + TA A  +++ G   N  
Sbjct: 9   AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQ 64
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
           D +G + +H +A  G +   ++L+  GA VN  D  G    H+A Q G TA    +VS  
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA----VVSFL 120
Query: 161 NADPDVPDNDGR--SPLHWAAYKGFADCIRLL 190
            A+ D+   D R  +PL  A  +G  D + +L
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 108 LHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV 166
           L  +A RG +Q V  LL RE    +A + +G     V   +G TA    ++ K  A P+V
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL-KQGASPNV 63
Query: 167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
            D  G SP+H AA  GF D +++L+   A     D  G  P+H A   G+    + L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--- 120
Query: 227 GKKEDLMVTDNTGLTPAQLA 246
             + DL   D  GLTP +LA
Sbjct: 121 AAESDLHRRDARGLTPLELA 140

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 108 LHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV 166
           L  +A RG +Q V  LL RE    +A + +G     V   +G  A    ++ K  A P+V
Sbjct: 14  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELL-KQGASPNV 71
Query: 167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
            D  G SP+H AA  GF D +++L+   A     D  G  P+H A   G+    + L   
Sbjct: 72  QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--- 128
Query: 227 GKKEDLMVTDNTGLTPAQLASDK 249
             + DL   D +GLTP +LA  +
Sbjct: 129 APESDLHHRDASGLTPLELARQR 151

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 34/216 (15%)
Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV-----N 98
           AA   D++ L +L++ EGC V +   +G  AL  AAL +   AA  ++E   ++      
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
           +  + GQTALH + +   + +   LL  GA V+A      + T     Y     +Y+   
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSA------RATGSVFHYRPHNLIYY--- 120
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
                       G  PL +AA  G  + +RLL+   A    QD  G T LH   ++ N  
Sbjct: 121 ------------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168
Query: 219 -AC---TVLVQAGKKEDL----MVTDNTGLTPAQLA 246
            AC    +L+     + L    +V +N GLTP +LA
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 108 LHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV 166
           L  +A RG +Q V  LL RE    +A + +G     V   +G  A    ++ K  A P+V
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELL-KQGASPNV 69
Query: 167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
            D  G SP+H AA  GF D +++L+   A     D  G  P+H A   G+    + L   
Sbjct: 70  QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--- 126
Query: 227 GKKEDLMVTDNTGLTPAQLASDK 249
             + DL   D +GLTP +LA  +
Sbjct: 127 APESDLHHRDASGLTPLELARQR 149

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 38  RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
           R  +  A   G    + +LVE     + + D  G  AL WA  NNR   A+ ++  G +V
Sbjct: 36  RTPLMVACMLGMENAIDKLVE-NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
           N  D +G+T L WS + G  +++  LL  GA VN  ++ G     VA++YG++
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 67/178 (37%), Gaps = 36/178 (20%)
Query: 86  AAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAA 145
           A   ++E+   +   D  G TAL W+     + +AE LL +G+ VN  D           
Sbjct: 50  AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF---------- 99
Query: 146 QYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGC 205
                                    G++PL W+   G+++    LL   A    ++ EG 
Sbjct: 100 ------------------------SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Query: 206 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
           TPL  A+  G  E    L++ G   D+   D TGLT    A     ++V       RR
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGA--DISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G   L  AA        + +++HG DVNA+D  G+T LH +A  
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
           G +++ E+LL  GA VNA D +G     ++   G    L  I+ K N
Sbjct: 91  GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G    H+AA+ G    +  ++ K  AD +  D+ GR+PLH AA  
Sbjct: 32  ILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
           G  + + +LL   A    QDK G T    +   GN +   +L
Sbjct: 91  GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D+ G +PLH AA +G  + + +LL   A     D  G TPLH AA  G+LE   
Sbjct: 38  ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           VL++ G   D+   D  G T   ++ D  +  +A  L
Sbjct: 98  VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 111/236 (47%), Gaps = 26/236 (11%)
Query: 49  DLEKLQRLVECEGCSVS--EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQT 106
           D++ +Q+L+E  G +V+  E +G G+  L  A   +R    + ++ HG D       G T
Sbjct: 17  DVDLVQQLLEG-GANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 74
Query: 107 ALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT---AFLY------HIV 157
               +A+ G++++ +L L +GA VN  D YG+     AA YG+     FLY      ++ 
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-FLDAYRGRQDKEGCTPLHWAAIR-- 214
            K   D +     G + L  AA KG  + +++LL  + A     D  G   L  A +   
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194
Query: 215 -GNLEACT-VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKR 268
             ++EA T +L+  G   D+ V    G TP  LA +K H      LG  +RLL++ 
Sbjct: 195 DSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKH------LGLVQRLLEQE 242

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G   L  AA        + ++++G DVNA D+ G T LH +A+R
Sbjct: 31  RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIR 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
           G +++ E+LL+ GA VNA D +G     ++   G    L  I+ K N
Sbjct: 91  GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D DG +PLH AA  G  + + +LL   A    +D  G TPLH AAIRG+LE   
Sbjct: 38  ADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           VL++ G   D+   D  G T   ++ D  +  +A  L
Sbjct: 98  VLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G   L  AA  +     + +++HG DVNA D+ G T LH +A+ 
Sbjct: 31  RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALF 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
           G +++ E+LL+ GA VNA D +G     ++   G    L  I+ K N
Sbjct: 91  GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 122 LLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
           +L+  GA VNA D  G    H+AA Y     +  ++ K  AD +  DNDG +PLH AA  
Sbjct: 32  ILMANGADVNANDRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALF 90
Query: 182 GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
           G  + + +LL   A    QDK G T    +   GN +   +L
Sbjct: 91  GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D  G +PLH AA     + + +LL   A     D +G TPLH AA+ G+LE   
Sbjct: 38  ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           VL++ G   D+   D  G T   ++ D  +  +A  L
Sbjct: 98  VLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 49  DLEKLQRLVECEGCSVS--EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQT 106
           D++ +Q+L+E  G +V+  E +G G+  L  A   +R    + ++ HG D       G T
Sbjct: 37  DVDLVQQLLEG-GANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 94
Query: 107 ALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT---AFLY------HIV 157
               +A+ G++++ +L L +GA VN  D YG+     AA YG+     FLY      ++ 
Sbjct: 95  PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-FLDAYRGRQDKEGCTPLHWAAIR-- 214
            K   D +     G + L  AA KG  + +++LL  + A     D  G   L  A +   
Sbjct: 155 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 214
Query: 215 -GNLEACT-VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDK 267
             ++EA T +L+  G   D+ V    G TP  LA +K H      LG  +RLL++
Sbjct: 215 DSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKH------LGLVQRLLEQ 261

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G   L  AA        + +++HG DVNA+D  G+T LH +A  
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
           G +++ E+LL  GA VNA D +G     ++   G    L  I+ K N
Sbjct: 91  GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 34/134 (25%)
Query: 90  IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
           ++ +G DVNA D  G T LH +A RG +++ E+LL+ GA VNA+D++             
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW------------- 79
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
                                GR+PLH AA  G  + + +LL   A    QDK G T   
Sbjct: 80  ---------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118
Query: 210 WAAIRGNLEACTVL 223
            +   GN +   +L
Sbjct: 119 ISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D+ G +PLH AA +G  + + +LL   A     D  G TPLH AA  G+LE   
Sbjct: 38  ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           VL++ G   D+   D  G T   ++ D  +  +A  L
Sbjct: 98  VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G   L  AA        + +++HG DVNA D  G+T LH +A  
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
           G +++ E+LL  GA VNA D +G     ++   G    L  I+ K N
Sbjct: 91  GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED-LAEILQKLN 136

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 34/134 (25%)
Query: 90  IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
           ++ +G DVNA D  G T LH +A RG +++ E+LL+ GA VNA D++             
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW------------- 79
Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
                                GR+PLH AA  G  + + +LL   A    QDK G T   
Sbjct: 80  ---------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118
Query: 210 WAAIRGNLEACTVL 223
            +   GN +   +L
Sbjct: 119 ISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           AD +  D+ G +PLH AA +G  + + +LL   A    +D  G TPLH AA  G+LE   
Sbjct: 38  ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVE 97
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           VL++ G   D+   D  G T   ++ D  +  +A  L
Sbjct: 98  VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G   L  A  +      + ++++G DVNA D  G T LH +A  
Sbjct: 31  RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90
Query: 115 GAIQVAELLLREGARVNAADMYG 137
           G +++AE+LL+ GA VNA D +G
Sbjct: 91  GHLEIAEVLLKHGADVNAQDKFG 113

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D  G T L+ +   G +++ E+LL+ GA VNA D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           +   H+AA  G    +  ++ K  AD +  D  G++    +   G  D   +L
Sbjct: 81  FTPLHLAAFIGHLE-IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA  G  D +R+L+   A    +D+ G TPL+ A   G+LE   VL++ G   D+   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA--DVNAVDA 78
Query: 238 TGLTPAQLASDKNHRQVA 255
            G TP  LA+   H ++A
Sbjct: 79  IGFTPLHLAAFIGHLEIA 96

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 55  RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR 114
           R++   G  V+  D  G+  L  AA+       + ++++G DVNA  +TG+T LH +A  
Sbjct: 31  RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWA 90
Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
             +++ E+LL+ GA VNA D +G     ++   G 
Sbjct: 91  DHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 34/136 (25%)
Query: 88  QYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY 147
           + +  +G DVNA D+ G T LH +A+ G +++ E+LL+ GA VNA               
Sbjct: 31  RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA--------------- 75
Query: 148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP 207
                                N GR+PLH AA+    + + +LL   A    QDK G T 
Sbjct: 76  -------------------TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 208 LHWAAIRGNLEACTVL 223
              +   GN +   +L
Sbjct: 117 FDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
           AA+ GQ   +  I++   AD +  D  G +PLH AA  G  + + +LL   A        
Sbjct: 21  AARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 204 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           G TPLH AA   +LE   VL++ G   D+   D  G T   ++ D  +  +A  L
Sbjct: 80  GRTPLHLAAWADHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Query: 107 ALHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD 165
           ++H  A +G +   +  LR+G   VN  D  G+     A+ +G+   +  ++ +W ADP 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPH 63
Query: 166 VPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
           +   +  S L  A+  G+ D + LLL  D      D  G TPL + A+RGN   C   + 
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY-AVRGNHVKCVEALL 122
Query: 226 AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
           A +  DL    ++G TP  LA    +R+V   + N
Sbjct: 123 A-RGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 34/141 (24%)
Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
           G   L  A++     + +Y++++G D N  DH G T LH +   G ++V ELLL+  A V
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           N     GYQ                             ND  SPLH AA  G  D ++LL
Sbjct: 70  NTT---GYQ-----------------------------ND--SPLHDAAKNGHVDIVKLL 95
Query: 191 LFLDAYRGRQDKEGCTPLHWA 211
           L   A R   +  G  P+ + 
Sbjct: 96  LSYGASRNAVNIFGLRPVDYT 116

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 36/158 (22%)
Query: 100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK 159
            +H G+T LH ++++G I   E LL+ G+                               
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGS------------------------------- 34
Query: 160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEA 219
              DP+V D+ G +PLH A   G    + LLL   A       +  +PLH AA  G+++ 
Sbjct: 35  ---DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI 91
Query: 220 CTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFF 257
             +L+  G   +    +  GL P     D++ + +   
Sbjct: 92  VKLLLSYGASRN--AVNIFGLRPVDYTDDESMKSLLLL 127

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
           DG +PLH AA  G A+ ++ LL   A    + K+G TPLH AA  G+ E   +L+  G  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-- 65
Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            D+      G TP  LA    H ++   L
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 107 ALHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD 165
           ++H  A +G +   +  LR+G   VN  D  G+     A+ +G+   +  ++ +W ADP 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPH 63
Query: 166 VPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
           +   +  S L  A+  G+ D + LLL  D      D  G TPL + A+ GN   C   + 
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY-AVHGNHVKCVEALL 122
Query: 226 AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
           A +  DL    ++G TP  LA    +R+V   + N
Sbjct: 123 A-RGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 39  NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           +D++T    G+   ++  ++     +++ D  G+  L WA    R+A  + +I  G  +N
Sbjct: 2   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 61
Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYH--- 155
             +    T LH +A  G   + + LL+  A +NA + +G    H A  +GQ         
Sbjct: 62  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Query: 156 ---IVSKWNADPDVPDNDGRSPL 175
              +VS  N   ++P +  ++PL
Sbjct: 122 NGALVSICNKYGEMPVDKAKAPL 144

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 39  NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           +D++T    G+   ++  ++     +++ D  G+  L WA    R+A  + +I  G  +N
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYH--- 155
             +    T LH +A  G   + + LL+  A +NA + +G    H A  +GQ         
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 156 ---IVSKWNADPDVPDNDGRSPL 175
              +VS  N   ++P +  ++PL
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPL 149

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 39  NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           N++ +AAA GDLE+L  L++    +V+  +G G  ALQ   L N                
Sbjct: 7   NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGN---------------- 49
Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
                              ++A  LL  GA  +  D  G+   H AA+ GQ   L  ++ 
Sbjct: 50  ------------------PEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLL- 90
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR-GRQDKEGCTPLHWAAIRGNL 217
           ++ AD ++ DN+G  PLH AA +G    +  L+   A   G ++ +G T    A + G  
Sbjct: 91  EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Query: 218 EACTVLVQAG 227
           E  +++   G
Sbjct: 151 EVVSLMQANG 160

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 94  GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL 153
           G  VN     G + LH +A+ G   +  LLL+ GA   A +       H+A Q G    +
Sbjct: 76  GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAI 213
             ++   NA P+  D  G +PL +A   G  + + LLL   A     + +G T LH A I
Sbjct: 136 KCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 214 RGNLEACTVLVQAG 227
             ++    +L+  G
Sbjct: 195 EKHVFVVELLLLHG 208

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 127 GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADC 186
           G  VN     G    HVAA +G+ A L  ++ K  A+    + D   PLH A  +G    
Sbjct: 76  GLGVNVTSQDGSSPLHVAALHGR-ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 187 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
           ++ LL  +A   ++D  G TPL +A   G+ E   +L+Q G    +  ++N G T    A
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA--SINASNNKGNTALHEA 192
Query: 247 SDKNHRQVAFFL---GNARRLLDKR 268
             + H  V   L   G + ++L+KR
Sbjct: 193 VIEKHVFVVELLLLHGASVQVLNKR 217

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           A+PD+ D  G + +H AA  GF D ++ LL   A    +D EG  PLH AA  G+L    
Sbjct: 61  ANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 222 VLVQ 225
            LV+
Sbjct: 121 FLVK 124

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DVNA D  G T LH +A  G +++ E+LL+ GA VNA D +G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA  G  D +R+L+   A    +DK+G TPLH AA  G+LE   VL++AG   D+   D 
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDK 66
Query: 238 TGLTPAQLASDKNHRQVAFFLGNA 261
            G T   ++ D  +  +A  L  A
Sbjct: 67  FGKTAFDISIDNGNEDLAEILQKA 90

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           ++ A    +  K+Q L+  +   + + D  G   L W+          +++    +VN  
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 101 DH---TGQTALHWSAVRGAIQVAELLLREGAR--VNAADMYGYQTTHVAAQYGQTAF-LY 154
           D+   +G T  H +   G ++V + L     +  +N     G    H+A   G+  F + 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVS 123
Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAI 213
             + +  A   + D   + PLH AA  G    I LL  L  +    QDK+G TPL  A  
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 214 RGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
            G+ +A  +LV+  G + DL+  DN G     +A ++  ++  FFL N
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFLNN 227

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLF------LDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           D DGR PLHW+      +    LL       LD Y    D  G TP H A   GNLE   
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY---PDDSGWTPFHIACSVGNLEVVK 89
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL---GNARRLLDK 267
            L     K DL    N G+T   LA  K   +V+ FL   G + R+ DK
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           ++ A    +  K+Q L+  +   + + D  G   L W+          +++    +VN  
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 101 DH---TGQTALHWSAVRGAIQVAELLLREGAR--VNAADMYGYQTTHVAAQYGQTAF-LY 154
           D+   +G T  H +   G ++V + L     +  +N     G    H+A   G+  F + 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVS 123
Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAI 213
             + +  A   + D   + PLH AA  G    I LL  L  +    QDK+G TPL  A  
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 214 RGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
            G+ +A  +LV+  G + DL+  DN G     +A ++  ++  FFL N
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFLNN 227

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLF------LDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           D DGR PLHW+      +    LL       LD Y    D  G TP H A   GNLE   
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY---PDDSGWTPFHIACSVGNLEVVK 89
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL---GNARRLLDK 267
            L     K DL    N G+T   LA  K   +V+ FL   G + R+ DK
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           ++ A    +  K+Q L+  +   + + D  G   L W+          +++    +VN  
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 101 DH---TGQTALHWSAVRGAIQVAELLLREGAR--VNAADMYGYQTTHVAAQYGQTAF-LY 154
           D+   +G T  H +   G ++V + L     +  +N     G    H+A   G+  F + 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVS 123
Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAI 213
             + +  A   + D   + PLH AA  G    I LL  L  +    QDK+G TPL  A  
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 214 RGNLEACTVLVQA-GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
            G+ +A  +LV+  G + DL+  DN G     +A ++  ++  FFL N
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLV--DNKGAKAEDVALNEQVKK--FFLNN 227

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 168 DNDGRSPLHWAAYKGFADCIRLLLF------LDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           D DGR PLHW+      +    LL       LD Y    D  G TP H A   GNLE   
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY---PDDSGWTPFHIACSVGNLEVVK 89
Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL---GNARRLLDK 267
            L     K DL    N G+T   LA  K   +V+ FL   G + R+ DK
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           A+PD+ D  G + +H AA  GF D ++ LL   A    +D EG  PLH AA  G+L    
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 222 VLVQ 225
            LV+
Sbjct: 121 FLVK 124

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           A+PD+ D  G + +H AA  GF D ++ LL   A    +D EG  PLH AA  G+L    
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 222 VLVQ 225
            LV+
Sbjct: 121 FLVK 124

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Query: 97  VNAADHTGQTALHWSAVRGAIQVAELLLREGA-RVNAADMYGYQTTHVAAQYG------- 148
           VN AD  G TALH+S       V + LL  G  +V+  +  GY    + A          
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPL 208
           +T      +   NA        G++ L  A   G  D ++ LL  +A    QD +G T L
Sbjct: 164 ETVLQLFRLGNINAK---ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL 220
Query: 209 HWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
             A   G+ E   +L+ A    D+ +TD  G T   +A D    ++A  L
Sbjct: 221 MCACEHGHKEIAGLLL-AVPSCDISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 32/172 (18%)
Query: 95  GDVNAADHTGQTALHWSAV---RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA 151
           GD+   D  G TAL   A    R  +  A+LL+ +GA+V   D  G              
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKV---DYDGA------------- 269
Query: 152 FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHW 210
                     A  D     GR+ LH+AA       ++ L+    + + +QD++G TP+  
Sbjct: 270 ----------ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXL 319
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR 262
           AA  G +E    L+Q G    +   D T  T  QLA   NH  +       R
Sbjct: 320 AAQEGRIEVVXYLIQQGAS--VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           ++ AA YG     + L+   G S      +    L  AA        + +++HG DVNA 
Sbjct: 38  LHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF 152
           D    TALHW+      +V ELL++ GA V           H  +++ +TAF
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADV-----------HTQSKFCKTAF 137

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
           D  G    H+AAQYG  +    ++ +     D      R+PLH AA +G A+ + +LL  
Sbjct: 31  DWLGTSPLHLAAQYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
            A    +D    T LHWA    + E   +L++ G
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 34/184 (18%)
Query: 48  GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
           G+ + +QR++  E    S P+  G  AL  A     T   +++++ G +VNAAD  G T 
Sbjct: 48  GEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTT-----HVAAQYGQ-TAFLYHIVSK-- 159
           LH +A    +QV + L+  GA V A      QT       +   Y Q + FLY +  K  
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
Query: 160 ----------WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA------YRGRQDKE 203
                     W+ +   P ND   P+         DC+ ++   D       +    DKE
Sbjct: 167 IMNKGVIYALWDYE---PQNDDELPMK------EGDCMTIIHREDEDEIEWWWARLNDKE 217
Query: 204 GCTP 207
           G  P
Sbjct: 218 GYVP 221

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
           DP +P+++G + LH A   G  + ++ L+         D +G TPLH AA   N++ C  
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 223 LVQAG 227
           LV++G
Sbjct: 122 LVESG 126

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 34/184 (18%)
Query: 48  GDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA 107
           G+ + +QR++  E    S P+  G  AL  A     T   +++++ G +VNAAD  G T 
Sbjct: 48  GEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 108 LHWSAVRGAIQVAELLLREGARVNAADMYGYQTT-----HVAAQYGQ-TAFLYHIVSK-- 159
           LH +A    +QV + L+  GA V A      QT       +   Y Q + FLY +  K  
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
Query: 160 ----------WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA------YRGRQDKE 203
                     W+ +   P ND   P+         DC+ ++   D       +    DKE
Sbjct: 167 IMNKGVIYALWDYE---PQNDDELPMK------EGDCMTIIHREDEDEIEWWWARLNDKE 217
Query: 204 GCTP 207
           G  P
Sbjct: 218 GYVP 221

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
           DP +P+++G + LH A   G  + ++ L+         D +G TPLH AA   N++ C  
Sbjct: 62  DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 223 LVQAG 227
           LV++G
Sbjct: 122 LVESG 126

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           V+  AA G++  L   +E E   ++  D  G+  L WAA + + A  ++++++G D    
Sbjct: 5   VHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
               ++AL  +  +G   + ++LL  G  VN  D  G  T  + A +G       ++ + 
Sbjct: 64  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVKMLLES 122
Query: 161 NADPDVPDNDGRSPLHWAAYKGF 183
            ADP +  + G + +  A   G+
Sbjct: 123 GADPTIETDSGYNSMDLAVALGY 145

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 91  IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
           IE    +N  D  G T L W+A  G I V E LL+ G                       
Sbjct: 21  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG----------------------- 57
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
                      ADP +      S L  A  KG+ D +++LL         D  G TPL +
Sbjct: 58  -----------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 106
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
           A    +++   +L+++G   D  +  ++G     LA    +R V
Sbjct: 107 AVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 148

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 39  NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           N++ +AAA GDLE+L  L++    +V+  +G G  ALQ   L N   A + ++  G + +
Sbjct: 7   NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPD 64
Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
             D TG   +H +A  G +   + LL   A VN  D  G    H+AA+ G    +  +V 
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
              ++    ++ G +    A   G  + + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
           A+PD+ D  G + +H AA  GF D ++ LL   A    +D EG  PLH AA  G+L    
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 222 VLVQ 225
            LV+
Sbjct: 121 FLVK 124

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           V+  AA G++  L   +E E   ++  D  G+  L WAA + + A  ++++++G D    
Sbjct: 23  VHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
               ++AL  +  +G   + ++LL  G  VN  D  G  T  + A +G       ++ + 
Sbjct: 82  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVKMLLES 140
Query: 161 NADPDVPDNDGRSPLHWAAYKGF 183
            ADP +  + G + +  A   G+
Sbjct: 141 GADPTIETDSGYNSMDLAVALGY 163

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 91  IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
           IE    +N  D  G T L W+A  G I V E LL+ G                       
Sbjct: 39  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG----------------------- 75
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
                      ADP +      S L  A  KG+ D +++LL         D  G TPL +
Sbjct: 76  -----------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 124
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
           A    +++   +L+++G   D  +  ++G     LA    +R V
Sbjct: 125 AVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 166

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           V+  AA G++  L   +E E   ++  D  G+  L WAA + + A  ++++++G D    
Sbjct: 7   VHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
               ++AL  +  +G   + ++LL  G  VN  D  G  T  + A +G       ++ + 
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNHVKCVKMLLES 124
Query: 161 NADPDVPDNDGRSPLHWAAYKGF 183
            ADP +  + G + +  A   G+
Sbjct: 125 GADPTIETDSGYNSMDLAVALGY 147

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 91  IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
           IE    +N  D  G T L W+A  G I V E LL+ G                       
Sbjct: 23  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG----------------------- 59
Query: 151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
                      ADP +      S L  A  KG+ D +++LL         D  G TPL +
Sbjct: 60  -----------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108
Query: 211 AAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
           A    +++   +L+++G   D  +  ++G     LA    +R V
Sbjct: 109 AVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 150

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Query: 49  DLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTA 107
           D+E  + L++  G  ++  + +      +A    RT    Y+++H   D+N  +  G  A
Sbjct: 51  DIEIAKALID-RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA 109
Query: 108 LHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKW----NA 162
           L  +A +G I   +LLL +G   ++  + +GY     A    +   LY  + K      A
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           D  + DN GR+ + +A  KG+ +  ++L
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 90/231 (38%), Gaps = 13/231 (5%)
Query: 41  VYTAAAYGDLEKLQRLV---ECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
           ++ A   G+L  + RLV   +  G  +   + L    L  A +    +  + ++  G   
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGA----RVNAADMYGYQTTHVAAQYGQTAFL 153
            A D  GQTA H +    +      LL   A     + A +  G    HVA    +    
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT-ECQET 131
Query: 154 YHIVSKWNADPDVPD-NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA 212
             ++ +  AD D  D   GRSPL  A        ++LLL   A    Q   G + LH A+
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 213 IRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
            RG L     LV++G    L    N   TP  +A  ++ R +    G A R
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHND--TPLMVA--RSRRVIDILRGKATR 238

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
           AA   +    + ++ +G DV A D  G T LH +A  G ++V +LLL  GA VNA D +G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA  G  D +R+L+   A    +DK G TPLH AA  G+LE   +L++AG   D+   D 
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVNAQDK 70
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
            G T   ++ D  +  +A  L
Sbjct: 71  FGKTAFDISIDNGNEDLAEIL 91

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 143 VAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDK 202
            AA  GQ   +  ++ +  ADP+  +  GR P+      G A    LLL   A     D 
Sbjct: 18  TAAARGQVETVRQLL-EAGADPNALNRFGRRPIQ-VMMMGSAQVAELLLLHGAEPNCADP 75
Query: 203 EGCT-PLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
              T P+H AA  G L+   VL +AG + D  V D  G  P  LA ++ HR +A +L
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVDLAEEQGHRDIARYL 130

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 77  WAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY 136
           WA  N      +  +  G DVN     G+  LH++A  G +++ E LL +GA +NA    
Sbjct: 8   WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA---- 63
Query: 137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
                                         PD    +PL  A Y+G   C++LLL   A 
Sbjct: 64  ------------------------------PDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 197 RGRQDKEGCTPL 208
           +  +  +G T L
Sbjct: 94  KTVKGPDGLTAL 105

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 178 AAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDN 237
           AA  G  D +R+L+   A    +DK G TPLH AA  G+LE   +L++AG   D+   D 
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVXAQDK 88
Query: 238 TGLTPAQLASDKNHRQVAFFL 258
            G T   ++ D  +  +A  L
Sbjct: 89  FGKTAFDISIDNGNEDLAEIL 109

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 91  IEHGGDVNAAD--HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
           + HG DVN  +      T L  +    ++   E LL+ GA VN AD  G    H A   G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
            T  L  +  K  AD    D++GR PL  A     AD + LL
Sbjct: 280 HTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCT-PLHWAAIRGNLEAC 220
           A+P+ P++ GR P+      G A    LLL   A     D    T P+H AA  G L+  
Sbjct: 36  ANPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTL 94
Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            VL +AG + D  V D  G  P  LA +  HR VA +L
Sbjct: 95  VVLHRAGARLD--VRDAWGRLPVDLAEELGHRDVARYL 130

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 91  IEHGGDVNAAD--HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
           + HG DVN  +      T L  +    ++   E LL+ GA VN AD  G    H A   G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
            T  L  +  K  AD    D++GR PL  A     AD + LL
Sbjct: 280 HTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 91  IEHGGDVNAAD--HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
           + HG DVN  +      T L  +    ++   E LL+ GA VN AD  G    H A   G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
            T  L  +  K  AD    D++GR PL  A     AD + LL
Sbjct: 280 HTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 34/130 (26%)
Query: 77  WAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY 136
           WA  N      +  +  G DVN     G+  LH++A  G +++ E LL +GA +NA    
Sbjct: 13  WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA---- 68
Query: 137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
                                         PD    +PL  A Y+G   C++LLL   A 
Sbjct: 69  ------------------------------PDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 197 RGRQDKEGCT 206
           +  +  +G T
Sbjct: 99  KTVKGPDGLT 108

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 20/200 (10%)
Query: 75  LQWAALNNRTAAAQYIIEH-GGDV---NAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
           L  A ++   A    +I    GD+   N  ++  QT LH + +    ++AE LL  G   
Sbjct: 9   LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 131 NAADMYGYQTTHVAAQYG---------QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYK 181
              D  G    H+A + G         Q+    H+ S   A     + +G + LH A+  
Sbjct: 69  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT----NYNGHTCLHLASIH 124
Query: 182 GFADCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
           G+   + LL+ L A    Q+   G T LH A    N +  ++L++ G   D+      G 
Sbjct: 125 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA--DVNRVTYQGY 182
Query: 241 TPAQLASDKNHRQVAFFLGN 260
           +P QL   +   ++   LG 
Sbjct: 183 SPYQLTWGRPSTRIQQQLGQ 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	634
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-50
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-39
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-49
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-46
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-44
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-44
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-44
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-38
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-43
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-42
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-41
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-41
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-28
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-40
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-40
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-40
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-40
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-38
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-40
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-40
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-38
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-39
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-37
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-37
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-34
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-37
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	5e-36
2rfa_A	232	Transient receptor potential cation channel subfa	5e-24
2rfa_A	232	Transient receptor potential cation channel subfa	6e-24
2rfa_A	232	Transient receptor potential cation channel subfa	5e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-36
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-29
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-35
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-35
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-34
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-32
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-15
2etb_A	256	Transient receptor potential cation channel subfam	7e-32
2etb_A	256	Transient receptor potential cation channel subfam	2e-26
2etb_A	256	Transient receptor potential cation channel subfam	1e-10
2etb_A	256	Transient receptor potential cation channel subfam	3e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-31
2pnn_A	273	Transient receptor potential cation channel subfa	6e-27
2pnn_A	273	Transient receptor potential cation channel subfa	3e-09
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-31
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-29
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-23
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  173 bits (442), Expect = 2e-50
 Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 7/220 (3%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             A  YG  E+ + LVE  G  V +PD      L WAA+NNR    +Y I  G  V+   
Sbjct: 14  VKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72

Query: 102 H-TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
                T LHW+  +G + +   L++ GA  +  D  G    H+AAQ+G T+ + ++++K 
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK- 131

Query: 161 NADPDVPDNDGRSPLHWAAYKGF-ADCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLE 218
             D D+ D +G +PL WAAY+    D  RLLL  +      DK    T LHWA + GN  
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191

Query: 219 ACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
             ++L++AG   ++   +  G +   LA  + +  +   L
Sbjct: 192 VISLLLEAGA--NVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  146 bits (371), Expect = 2e-40
 Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 6/198 (3%)

Query: 64  VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELL 123
           ++  D    + +  A         + ++E G DV   D    T LHW+A+   I + +  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 124 LREGARVNAADMYGYQTT-HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG 182
           + +GA V+        T  H A + G  + +  ++    ADP + D +G S +H AA  G
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFG 120

Query: 183 FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN-LEACTVLVQAGKKEDLMVTDNT-GL 240
               +  L+         D+ G TPL WAA R + ++   +L+       + + D     
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN--VSVNLGDKYHKN 178

Query: 241 TPAQLASDKNHRQVAFFL 258
           T    A    +  V   L
Sbjct: 179 TALHWAVLAGNTTVISLL 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  144 bits (366), Expect = 1e-39
 Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 13/193 (6%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDG-LGYYALQWAALNNRTAAAQYIIEHGGDVNAADH 102
           AA    ++ ++  +  +G  V +  G L    L WA      +    ++++G D +  D 
Sbjct: 49  AAINNRIDLVKYYIS-KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107

Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT--HVAAQYGQTAFLYHIVS-- 158
            G + +H +A  G   +   L+ +G  V+  D  G   T    AA    +          
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM--TPLMWAAYRTHSV---DPTRLL 162

Query: 159 -KWNADPDVPDN-DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN 216
             +N   ++ D     + LHWA   G    I LLL   A    Q+ +G + L  A  R N
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222

Query: 217 LEACTVLVQAGKK 229
           +     L +A + 
Sbjct: 223 VWMINHLQEARQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYG-DLEKLQRLVECEGCSVSEPDGL-GYYALQWAAL 80
           + G  VD      +  T    AA     ++  + L+     SV+  D      AL WA L
Sbjct: 130 AKGQDVDMMD--QNGMTPLMWAAYRTHSVDPTRLLLT-FNVSVNLGDKYHKNTALHWAVL 186

Query: 81  NNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNA 132
              T     ++E G +V+A +  G++AL  +  R  + +   L         
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  175 bits (447), Expect = 8e-49
 Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 4/217 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + A  + +L+ ++ L+   G S   P   GY  L  AA  N+   A+ ++++GG  NA  
Sbjct: 184 HVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
             G T LH +A  G  ++  LLL + A  N  +  G    H+ AQ G       ++    
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-G 301

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
              D     G +PLH A++ G    ++ LL   A    + K G +PLH AA +G+ +  T
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 361

Query: 222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           +L++ G         + G TP  +A    +  V   L
Sbjct: 362 LLLKNG--ASPNEVSSDGTTPLAIAKRLGYISVTDVL 396

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  174 bits (445), Expect = 1e-48
 Identities = 68/236 (28%), Positives = 99/236 (41%), Gaps = 10/236 (4%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
           S G+            T    A+  G L  ++ L++  G S +  +      L  AA   
Sbjct: 2   SPGISGGGGG--ESGLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAG 58

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTH 142
            T  A+Y++++   VNA     QT LH +A  G   + +LLL   A  N A   G+   H
Sbjct: 59  HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118

Query: 143 VAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDK 202
           +AA+ G    +  ++ K  A        G +PLH AA  G      LLL  DA+     K
Sbjct: 119 IAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

Query: 203 EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            G TPLH A    NL+   +L+  G           G TP  +A+ +N  +VA  L
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPH--SPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  160 bits (407), Expect = 3e-43
 Identities = 60/242 (24%), Positives = 97/242 (40%), Gaps = 16/242 (6%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
             G      +   + YT    AA    +E  + L++  G S +     G   L  AA   
Sbjct: 200 PRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEG 256

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTH 142
                  ++    + N  + +G T LH  A  G + VA++L++ G  V+A    GY   H
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316

Query: 143 VAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDK 202
           VA+ YG    +  ++    AD +     G SPLH AA +G  D + LLL   A       
Sbjct: 317 VASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375

Query: 203 EGCTPLHWAAIRGNLEACTVLVQAGKKE-DLMVTDNTGLTPAQLA-------SDKNHRQV 254
           +G TPL  A   G +    VL     +   ++V+D   ++  +          D+    +
Sbjct: 376 DGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELI 435

Query: 255 AF 256
           +F
Sbjct: 436 SF 437

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  161 bits (411), Expect = 6e-46
 Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 5/218 (2%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + AA  G ++    LV+  G ++          L  AA NN   A +Y+I+ G  V+  D
Sbjct: 16  HAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
             G T LH +A +G  +V + LL  G   VN  D  G+     A +Y     +  ++SK 
Sbjct: 75  AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK- 133

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
            +D ++ DN+    LHWAA+ G  D   +LL         +  G +PLH AA     +  
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193

Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            + +      D+ + +  G TP Q AS  +    A  +
Sbjct: 194 VLFLSRD--SDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  153 bits (390), Expect = 6e-43
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 2/195 (1%)

Query: 64  VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELL 123
                      L  AA          +++ G +++      +T L  +A    ++  + L
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 124 LREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF 183
           ++ GA V+  D  G    H+AA+ G    + +++S    D +  D+ G +P+ WA     
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 184 ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA 243
            D ++LLL   +    +D E    LHWAA  G ++   +L+ A    DL   +  G +P 
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK--CDLHAVNIHGDSPL 181

Query: 244 QLASDKNHRQVAFFL 258
            +A+ +N        
Sbjct: 182 HIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  147 bits (373), Expect = 1e-40
 Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 3/187 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG-GDVNAA 100
             AA    LE ++ L++  G  V   D  G   L  AA        QY++ +G  DVN  
Sbjct: 49  MEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
           D  G T + W+     + + +LLL +G+ +N  D       H AA  G       +++  
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA- 166

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
             D    +  G SPLH AA +   DC+ L L  D+    ++KEG TPL  A++   + + 
Sbjct: 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA 226

Query: 221 TVLVQAG 227
             + +A 
Sbjct: 227 LQMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  128 bits (325), Expect = 5e-34
 Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 96  DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYH 155
           +        ++ LH +A  G + +  +L++ GA ++            AA+      + +
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 156 IVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR-GRQDKEGCTPLHWAAIR 214
           ++    A  D  D +G + LH AA KG  + ++ LL         QD  G TP+ WA   
Sbjct: 63  LIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 215 GNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            +++   +L+  G   D+ + DN        A+      +A  L
Sbjct: 122 KHVDLVKLLLSKG--SDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.8 bits (211), Expect = 1e-18
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
           + +  +   + RSPLH AA  G  D   +L+   A      ++  TPL  AA   +LEA 
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
             L++AG    +   D  G T   LA+ K H +V  +L
Sbjct: 61  KYLIKAG--ALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.0 bits (183), Expect = 5e-15
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
           S G  ++     N+       AA  G ++  + L+    C +   +  G   L  AA  N
Sbjct: 132 SKGSDINIRD--NEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAAREN 188

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGA 128
           R       +    DV   +  G+T L  +++   +  A  + +   
Sbjct: 189 RYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  157 bits (399), Expect = 3e-44
 Identities = 55/223 (24%), Positives = 83/223 (37%), Gaps = 11/223 (4%)

Query: 44  AAAYGDLEKLQRLVECE---GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           A   G+L  + RLV      G  +   + L    L  A +    +  + ++  G    A 
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGAR----VNAADMYGYQTTHVAAQYGQTAFLYHI 156
           D  GQTA H +    +      LL   A     + A +  G    HVA        +  +
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 157 VSKWNADPDVPD-NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG 215
           + +  AD D  D   GRSPL  A        ++LLL   A    Q   G + LH A+ RG
Sbjct: 136 LER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194

Query: 216 NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            L     LV++G   D  + +    TP  +A  +    +    
Sbjct: 195 LLPLVRTLVRSG--ADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  145 bits (369), Expect = 5e-40
 Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 10/196 (5%)

Query: 71  GYYALQWAALNNRTAAAQYIIE----HGGDVNAADHTGQTALHWSAVRGAIQVAELLLRE 126
           G   L  A +     A   ++      G +++  ++  QT LH + +     V  LL+  
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68

Query: 127 GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK---WNADPDVPDNDGRSPLHWAAYKGF 183
           GA   A D +G    H+A ++     L  ++        D +  + DG + LH A     
Sbjct: 69  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128

Query: 184 ADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP 242
            + ++LLL   A     D K G +PL  A    +L    +L+Q G   ++     +G + 
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG--ANVNAQMYSGSSA 186

Query: 243 AQLASDKNHRQVAFFL 258
              AS +    +   L
Sbjct: 187 LHSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  136 bits (344), Expect = 1e-36
 Identities = 40/189 (21%), Positives = 71/189 (37%), Gaps = 7/189 (3%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG----GDVNA 99
           A        ++ LV   G S    D  G  A   A  +      + +++       D+ A
Sbjct: 53  AVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA 111

Query: 100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADM-YGYQTTHVAAQYGQTAFLYHIVS 158
            ++ G TALH +      +  +LLL  GA ++A D+  G      A +    + +  ++ 
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171

Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
              A+ +     G S LH A+ +G    +R L+   A    ++    TPL  A  R  ++
Sbjct: 172 H-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230

Query: 219 ACTVLVQAG 227
                    
Sbjct: 231 ILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  117 bits (297), Expect = 3e-30
 Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 97  VNAADHTGQTALHWSAVRGAIQVAELLL----REGARVNAADMYGYQTTHVAAQYGQTA- 151
              AD  G T LH + V+G +     L+    + G  ++  +       H+A      + 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 152 --FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGR----QDKEGC 205
              L   V+   A P   D  G++  H A       C+R LL   A        ++ +G 
Sbjct: 62  VRLL---VTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL 117

Query: 206 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTD-NTGLTPAQLASDKNHRQVAFFL 258
           T LH A      E   +L++ G   D+   D  +G +P   A + N   +   L
Sbjct: 118 TALHVAVNTECQETVQLLLERGA--DIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  115 bits (291), Expect = 2e-29
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 5/154 (3%)

Query: 42  YTAAAYGDLEKLQRLVE---CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           + A  +     L+ L++        +   +  G  AL  A         Q ++E G D++
Sbjct: 84  HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID 143

Query: 99  AAD-HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
           A D  +G++ L  +    ++ + +LLL+ GA VNA    G    H A+  G    +  +V
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
               AD  + +    +PL  A  +   D +R   
Sbjct: 204 RS-GADSSLKNCHNDTPLMVARSRRVIDILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.9 bits (180), Expect = 1e-14
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             A     L  +Q L++  G +V+     G  AL  A+        + ++  G D +  +
Sbjct: 155 IHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGA 128
               T L  +  R  I +        A
Sbjct: 214 CHNDTPLMVARSRRVIDILRGKATRPA 240

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  157 bits (400), Expect = 3e-44
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 4/192 (2%)

Query: 68  DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREG 127
           D  G  AL  AA  +R+ AA+ ++E   D N  D+ G+T LH +    A  V ++L+R  
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113

Query: 128 AR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADC 186
           A  ++A    G     +AA+      L  +++  +AD +  D+ G+S LHWAA     D 
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDA 172

Query: 187 IRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
             +LL   A +  Q+    TPL  AA  G+ E   VL+      +  +TD+    P  +A
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLPRDIA 230

Query: 247 SDKNHRQVAFFL 258
            ++ H  +   L
Sbjct: 231 QERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  143 bits (363), Expect = 5e-39
 Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 3/185 (1%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-DVNAADH 102
           AA Y   +  +RL+E      +  D +G   L  A   +     Q +I +   D++A  H
Sbjct: 64  AARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
            G T L  +A      + E L+   A VNA D  G    H AA          ++    A
Sbjct: 123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GA 181

Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
           + D+ +N   +PL  AA +G  +  ++LL   A R   D     P   A  R + +   +
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241

Query: 223 LVQAG 227
           L    
Sbjct: 242 LDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  138 bits (350), Expect = 2e-37
 Identities = 52/191 (27%), Positives = 74/191 (38%), Gaps = 3/191 (1%)

Query: 69  GLGYYALQWAALNNRTAAAQYIIEHGGDV-NAADHTGQTALHWSAVRGAIQVAELLLREG 127
           G G          +  A     I  G  + N  D TG+TALH +A       A+ LL   
Sbjct: 21  GGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS 80

Query: 128 ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
           A  N  D  G    H A           ++     D D   +DG +PL  AA       +
Sbjct: 81  ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140

Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
             L+   A     D  G + LHWAA   N++A  VL++ G   +  + +N   TP  LA+
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG--ANKDMQNNREETPLFLAA 198

Query: 248 DKNHRQVAFFL 258
            +   + A  L
Sbjct: 199 REGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  111 bits (281), Expect = 6e-28
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 18/178 (10%)

Query: 96  DVNAADHTGQTALHWSAVRGA-------------IQVAELLLREGARV-NAADMYGYQTT 141
           DVN     G T L  ++  G                V    + +GA + N  D  G    
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 142 HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR-GRQ 200
           H+AA+Y ++     ++   +AD ++ DN GR+PLH A         ++L+   A     +
Sbjct: 62  HLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 201 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
             +G TPL  AA          L+ +    D+   D+ G +    A+  N+   A  L
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHA--DVNAVDDLGKSALHWAAAVNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 94.8 bits (237), Expect = 4e-22
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 35/150 (23%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             AA       L+ L+      V+  D LG  AL WAA  N   AA  ++++G + +  +
Sbjct: 129 ILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
           +  +T L  +A  G+ + A++LL   A  +                              
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDIT---------------------------- 219

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                 D+  R P   A  +   D +RLL 
Sbjct: 220 ------DHMDRLPRDIAQERMHHDIVRLLD 243

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 73.7 bits (182), Expect = 8e-15
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AAA  +++    L++  G +    +      L  AA       A+ +++H  + +  DH 
Sbjct: 164 AAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVN 131
            +     +  R    +  LL  E    +
Sbjct: 223 DRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  157 bits (399), Expect = 9e-44
 Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 6/230 (2%)

Query: 27  SNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAA 86
           SN ++ D  S  + ++ AA +G    L+ L+  +G +V+         L  A L    + 
Sbjct: 49  SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSC 107

Query: 87  AQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ 146
            + +++HG  VN       T L  + V G+     LLL+ GA V           H AA+
Sbjct: 108 VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR 166

Query: 147 YGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCT 206
            G    +  +++    + D   +   +PL+ A       C++ LL   A    Q K   +
Sbjct: 167 RGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDS 224

Query: 207 PLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAF 256
           PLH      + E   +L+  G   D    +  G  P +L   ++     F
Sbjct: 225 PLHAVVRTASEELACLLMDFG--ADTQAKNAEGKRPVELVPPESPLAQLF 272

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  153 bits (388), Expect = 4e-42
 Identities = 37/188 (19%), Positives = 72/188 (38%), Gaps = 5/188 (2%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
            +  +  AA++    + + +I  G  VN       + LH + + G +   ++LL+ GA+V
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           N      +     A   G    +  ++    A    P++D  SP+H AA +G  +C+  L
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQ-PESDLASPIHEAARRGHVECVNSL 176

Query: 191 LFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN 250
           +        +     TPL+ A           L+++G   +         +P        
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLHAVVRTA 233

Query: 251 HRQVAFFL 258
             ++A  L
Sbjct: 234 SEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  136 bits (345), Expect = 3e-36
 Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 13/234 (5%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
            +++        LV   G  ++  DG             R      ++ +    +A    
Sbjct: 2   GSSHHHHHHSSGLVP-RGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-- 58

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
             + +H +A+ G       L+ +G  VN          H A   G  + +  ++    A 
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-GAQ 117

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRG---RQDKEGCTPLHWAAIRGNLEAC 220
            +    D  +PL  A   G  DC+ LLL      G   + + +  +P+H AA RG++E  
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLL----QHGASVQPESDLASPIHEAARRGHVECV 173

Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSP 274
             L+  G   ++    +   TP  LA +   R     L  +   +++    +SP
Sbjct: 174 NSLIAYGG--NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP 225

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  114 bits (287), Expect = 2e-28
 Identities = 33/186 (17%), Positives = 55/186 (29%), Gaps = 38/186 (20%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + A   G  + +  L++  G SV +P+      +  AA          +I +GG+++   
Sbjct: 130 FNACVSGSWDCVNLLLQ-HGASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
               T L+ +         + LL  GA VN                              
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGADVNQ----------------------------- 218

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT 221
                      SPLH        +   LL+   A    ++ EG  P+        L    
Sbjct: 219 ------GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL- 271

Query: 222 VLVQAG 227
            L + G
Sbjct: 272 FLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
           + G  +D +   + + T    A        +++L+E  G  V++  G     L       
Sbjct: 178 AYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLE-SGADVNQGKG-QDSPLHAVVRTA 233

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
               A  +++ G D  A +  G+  +        +     L REGA +   
Sbjct: 234 SEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLPKP 283

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  154 bits (392), Expect = 2e-43
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR- 129
           G  AL  AA  +R+ AA+ ++E   D N  D+ G+T LH +    A  V ++L+R  A  
Sbjct: 25  GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84

Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
           ++A    G     +AA+      L  +++  +AD +  D+ G+S LHWAA     D   +
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVV 143

Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 249
           LL   A +  Q+    TPL  AA  G+ E   VL+      +  +TD+    P  +A ++
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLPRDIAQER 201

Query: 250 NHRQVAFFL 258
            H  +   L
Sbjct: 202 MHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  139 bits (354), Expect = 4e-38
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 3/185 (1%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-DVNAADH 102
           AA Y   +  +RL+E      +  D +G   L  A   +     Q +I +   D++A  H
Sbjct: 32  AARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 90

Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
            G T L  +A      + E L+   A VNA D  G    H AA          ++    A
Sbjct: 91  DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GA 149

Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
           + D+ +N   +PL  AA +G  +  ++LL   A R   D     P   A  R + +   +
Sbjct: 150 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 209

Query: 223 LVQAG 227
           L +  
Sbjct: 210 LDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  131 bits (332), Expect = 4e-35
 Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 3/178 (1%)

Query: 82  NRTAAAQYIIEHGGDV-NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQT 140
           +  A     I  G  + N  D TG+TALH +A       A+ LL   A  N  D  G   
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 141 THVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQ 200
            H A           ++     D D   +DG +PL  AA       +  L+   A     
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 201 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           D  G + LHWAA   N++A  VL++ G   +  + +N   TP  LA+ +   + A  L
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGA--NKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.6 bits (234), Expect = 6e-22
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 35/150 (23%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             AA       L+ L+      V+  D LG  AL WAA  N   AA  ++++G + +  +
Sbjct: 97  ILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
           +  +T L  +A  G+ + A++LL   A  +                              
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDHFANRDIT---------------------------- 187

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                 D+  R P   A  +   D +RLL 
Sbjct: 188 ------DHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 76.3 bits (189), Expect = 6e-16
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + AAA  +++    L++  G +    +      L  AA       A+ +++H  + +  D
Sbjct: 130 HWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           H  +     +  R    +  LL       +   
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  155 bits (395), Expect = 2e-42
 Identities = 51/236 (21%), Positives = 85/236 (36%), Gaps = 23/236 (9%)

Query: 44  AAAYGDLEKLQRLVE-------CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGD 96
            A+    EK + L+          G  V+  D      L  A L  R     Y+++ G D
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 97  VNAADHTGQTALHWSAVRGAIQVAELLL---REGARVNAADMYGYQTTHVAAQYGQTAFL 153
               + + ++ALH +A      +   +L   +    +   D  G     + A       +
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 154 YH----------IVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-FLDAYRGRQDK 202
                       +     A  D     GR+ LH+AA       ++ L+    + + +QD+
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 203 EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           +G TP+  AA  G +E    L+Q G    +   D T  T  QLA   NH  +    
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  135 bits (341), Expect = 7e-35
 Identities = 35/221 (15%), Positives = 67/221 (30%), Gaps = 13/221 (5%)

Query: 64  VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELL 123
            +E      Y       N       +   +       +      LH     G+  + E +
Sbjct: 54  RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHT-EAAGSYAITEPI 112

Query: 124 LREGARVNAADMYGYQTTHVAAQYGQTA----FLYHIVSKW---NADPDVPDNDGRSPLH 176
            RE   +     +     H  A           + H   +     AD +  D D  +PL 
Sbjct: 113 TRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 171

Query: 177 WAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE-DLMVT 235
            A        +  L+   A     +K   + LH AA   +      ++ + K + D+   
Sbjct: 172 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 231

Query: 236 DNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIG 276
           D  G+T   + +    R     + +A+ L++K    +    
Sbjct: 232 DRNGMTALMIVAHNEGRDQ---VASAKLLVEKGAKVDYDGA 269

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  132 bits (335), Expect = 4e-34
 Identities = 42/202 (20%), Positives = 75/202 (37%), Gaps = 15/202 (7%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEH---GGDVNAA 100
           A        +  L++  G   +  +     AL  AA N       Y++      GD+   
Sbjct: 173 AVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 231

Query: 101 DHTGQTALHWSAVRG---AIQVAELLLREGARVN--------AADMYGYQTTHVAAQYGQ 149
           D  G TAL   A       +  A+LL+ +GA+V+        +    G    H AAQ   
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
              + ++V +  ++ D  D DG++P+  AA +G  + +  L+   A     D    T   
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ 351

Query: 210 WAAIRGNLEACTVLVQAGKKED 231
            A    +     +  +   + +
Sbjct: 352 LAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (263), Expect = 1e-24
 Identities = 30/209 (14%), Positives = 58/209 (27%), Gaps = 22/209 (10%)

Query: 58  ECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI 117
           E +     +      ++L  A+ +                N   H            G  
Sbjct: 24  EEKNRKNHQSITSSQHSLLEASYDG---------YIKRQRNELQHYSLYPNPQGYGNGND 74

Query: 118 QVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
            + +            +       H  A  G  A    I  + + +        R+ LHW
Sbjct: 75  FLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRE-SVNIID-PRHNRTVLHW 131

Query: 178 AAYKGFADCIRLLLFLDA----YRG----RQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
            A    A+    L+  +A      G      D +  TPL  A +         L++AG  
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA- 190

Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            D  + + +  +    A+      +  ++
Sbjct: 191 -DPTIYNKSERSALHQAAANRDFGMMVYM 218

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  147 bits (374), Expect = 1e-41
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 8/172 (4%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGD-VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNA 132
           ++   A        +  +  G + VN  D  G T L W++  G I+    LL  GA  + 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 133 ADMYGYQTT--HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
                   +   +A+  G T  +  ++ + + D ++ D +G +PL +A       C+  L
Sbjct: 65  LAKERE--SALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 191 LFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP 242
           L   A    +   G TP+  A   G  +   V+        L  ++     P
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL--KLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  126 bits (319), Expect = 6e-34
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 10/159 (6%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGA-RVNAADMYGYQTTHVAAQYGQTAFLYHIVS---K 159
              ++H  A +G +   +  LR+G   VN  D  G+     A+ +G+       V    +
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIE----TVRFLLE 57

Query: 160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEA 219
           W ADP +   +  S L  A+  G+ D + LLL  D      D  G TPL +A    +++ 
Sbjct: 58  WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKC 117

Query: 220 CTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
              L+  G   DL    ++G TP  LA    +R+V   +
Sbjct: 118 VEALLARG--ADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  148 bits (377), Expect = 3e-41
 Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 22/225 (9%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + A    +  K+Q L+  +   + + D  G   L W+          +++    +VN  D
Sbjct: 7   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66

Query: 102 HT---GQTALHWSAVRGAIQVAELLL--REGARVNAADMYGYQTTHVAAQYGQTA---FL 153
           +    G T  H +   G ++V + L        +N     G    H+A          FL
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126

Query: 154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-----FLDAYRGRQDKEGCTPL 208
              +    A   + D   + PLH AA  G    I LL       ++     QDK+G TPL
Sbjct: 127 ---IEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW----QDKQGWTPL 178

Query: 209 HWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ 253
             A   G+ +A  +LV+     +  + DN G     +A ++  ++
Sbjct: 179 FHALAEGHGDAAVLLVEK-YGAEYDLVDNKGAKAEDVALNEQVKK 222

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  142 bits (360), Expect = 6e-39
 Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 6/194 (3%)

Query: 70  LGYYALQWAALNNRTAA-AQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGA 128
           +  Y L  A + N      + +      +   D  G+  LHWS    A ++   LL +  
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 129 RVNAADM---YGYQTTHVAAQYGQTAFLYHIVSKW-NADPDVPDNDGRSPLHWAAYKGFA 184
            VN  D     G+   H+A   G    +  +  +    D +   N G + LH A  K + 
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 185 DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQ 244
           +  + L+   A    +DK    PLH AA  G+L+   +L   G K  +   D  G TP  
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLF 179

Query: 245 LASDKNHRQVAFFL 258
            A  + H   A  L
Sbjct: 180 HALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  112 bits (283), Expect = 2e-28
 Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 5/152 (3%)

Query: 42  YTAAAYGDLEKLQRLVE-CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           + A + G+LE ++ L +      +++    G   L  A        +Q++IE+G  V   
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREG-ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK 159
           D   Q  LH +A  G++++ ELL   G + VN  D  G+     A   G       +V K
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
           + A+ D+ DN G      A  +      +  L
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNE---QVKKFFL 225

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  149 bits (380), Expect = 4e-41
 Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 20/233 (8%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDG-LGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
             A    D++ +Q+L+E  G +V+  +   G+  L  A   +R    + ++ HG D    
Sbjct: 10  IKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA---FLY--- 154
              G T    +A+ G++++ +L L +GA VN  D YG+     AA YG+     FLY   
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 155 ---HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRG----RQDKEGCTP 207
              ++  K   D +     G + L  AA KG  + +++LL      G      D  G   
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL---DEMGADVNACDNMGRNA 185

Query: 208 LHWAAIRGNLEACTVLVQA--GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           L  A +  +      +         D+ V    G TP  LA +K H  +   L
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  148 bits (377), Expect = 1e-40
 Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 18/230 (7%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A      + ++ L+   G         G      AA+       +  +  G DVN  D  
Sbjct: 46  AVQMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY 104

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT----------HVAAQYGQTAFL 153
           G TA   +AV G ++  + L + GA VN                      AA+ G    L
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADC----IRLLLFLDAYRGRQDKEGCTPLH 209
             ++ +  AD +  DN GR+ L  A              LLL   A    + + G TPL 
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224

Query: 210 WAAIRGNLEACTVLV-QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            A  + +L     L+ Q     ++  TD+ G T   LA +   +++A  L
Sbjct: 225 LAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  136 bits (346), Expect = 2e-36
 Identities = 52/205 (25%), Positives = 83/205 (40%), Gaps = 24/205 (11%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             AA  G ++ L+  +  +G  V+E D  G+ A   AA+  +  A +++ + G +VN   
Sbjct: 77  LLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135

Query: 102 ----------HTGQTALHWSAVRGAIQVAELLLRE-GARVNAADMYGYQTTHVAAQYGQT 150
                       G TAL  +A +G ++V ++LL E GA VNA D  G      A      
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195

Query: 151 AFLYHIV----SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRG----RQDK 202
           + +  I         AD +V    G++PL  A  K     ++ LL             D 
Sbjct: 196 SDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLL---EQEHIEINDTDS 251

Query: 203 EGCTPLHWAAIRGNLEACTVLVQAG 227
           +G T L  A      +   +L + G
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  135 bits (342), Expect = 8e-36
 Identities = 51/194 (26%), Positives = 73/194 (37%), Gaps = 15/194 (7%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAAD-HTGQTALHWSAVRGAIQVAELLLREGAR 129
             + L  A  N      Q ++E G +VN  +   G T LH +       + ELLLR GA 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
                  G     +AA  G    L   +SK  AD +  D  G +    AA  G    ++ 
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 190 LLFLDA----------YRGRQDKEGCTPLHWAAIRGNLEACTVLV-QAGKKEDLMVTDNT 238
           L    A           + R  K G T L  AA +G++E   +L+ + G   D+   DN 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA--DVNACDNM 181

Query: 239 GLTPAQLASDKNHR 252
           G      A   +  
Sbjct: 182 GRNALIHALLSSDD 195

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (310), Expect = 2e-31
 Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 10/168 (5%)

Query: 100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT-HVAAQYGQTAFLYHIVS 158
           A       L  +     + + + LL  GA VN  +  G  T  H A Q  +   +  ++ 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
              ADP +   +G +P   AA  G    ++L L   A     D  G T    AA+ G ++
Sbjct: 61  H-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 219 ACTVLVQAG--------KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           A   L + G         KED       G T    A++K H +V   L
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.8 bits (198), Expect = 1e-16
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 42  YTAAAYGDLEKLQRLVEC---EGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-DV 97
             A    D   ++ +       G  V+     G   L  A         Q ++E    ++
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADM 135
           N  D  G+TAL  +      ++AELL + GA  +  D+
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  149 bits (378), Expect = 7e-41
 Identities = 52/231 (22%), Positives = 79/231 (34%), Gaps = 18/231 (7%)

Query: 44  AAAYGDLEKLQRLVE--CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           A  +     L  L+        +   + LG  AL  AA+    +  + +   G  V  A+
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNA--ADMYGYQTTHVAAQYGQTAFLYHIVSK 159
             G TALH +    A   A +LL+         +D Y  Q+                   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 160 -----------WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE-GCTP 207
                      W    +  + DG +PLH A     A+ +RLL    A   + +   G TP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 208 LHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           LH A          +L++AG   D       G TP   A  + +  +A  L
Sbjct: 196 LHLAVEAQAASVLELLLKAG--ADPTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  136 bits (344), Expect = 4e-36
 Identities = 46/227 (20%), Positives = 73/227 (32%), Gaps = 19/227 (8%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA---- 99
           AA  G+   +++L    G  V   +  G+ AL  A        A  +++           
Sbjct: 52  AAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

Query: 100 ------ADHTGQT----ALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ 149
                  D T  T    A   S      +          ++ A +  G+   HVA  +  
Sbjct: 111 TYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD 170

Query: 150 TAFLYHIVSKWNADPDVPDND-GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPL 208
              +  +     AD + P+   GR+PLH A     A  + LLL   A    +   G TPL
Sbjct: 171 AEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229

Query: 209 HWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA 255
             A +R N     +L   G            L+P   +   +     
Sbjct: 230 GSALLRPNPILARLLRAHGA--PEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  122 bits (308), Expect = 3e-31
 Identities = 40/206 (19%), Positives = 65/206 (31%), Gaps = 27/206 (13%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGD---VNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
           AL  A ++       +++        ++  +  GQTALH +A+ G     E L   GA V
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP--------------LH 176
             A+  G+   H+A +         ++           +D                    
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 177 WAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG----KKEDL 232
            +      +              ++ +G TPLH A I  + E   +L  AG    K    
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--- 187

Query: 233 MVTDNTGLTPAQLASDKNHRQVAFFL 258
                 G TP  LA +     V   L
Sbjct: 188 --EPTCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  105 bits (265), Expect = 2e-25
 Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 20/179 (11%)

Query: 97  VNAADHTGQTALHWSAVRGAIQVAELLLREGA---RVNAADMYGYQTTHVAAQYGQTAFL 153
                  G TALH + +       + LL   A    ++  +  G    H+AA  G+ + +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP------ 207
             + +   A   V +  G + LH A       C  +LL       R   +          
Sbjct: 62  EKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 208 --------LHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
                      +      E             L   +  G TP  +A      ++   L
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWR--LQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 42/170 (24%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDG-LGYYALQWAALN 81
              + ++ E+   D +T    A  + D E ++ L +  G  +++P+   G   L  A   
Sbjct: 146 DWRLQLEAEN--YDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEA 202

Query: 82  NRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT 141
              +  + +++ G D  A  + G+T L  + +R    +A LL   GA             
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED-------- 254

Query: 142 HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                                       D  SP   +     +D      
Sbjct: 255 --------------------------GGDKLSPCSSSGSDSDSDNRDEGD 278

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  148 bits (375), Expect = 2e-40
 Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 16/233 (6%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
                  ++L+  +        + D  G+ A  +A  +N       ++  G   N  +  
Sbjct: 6   RINTWKSKQLKSFLS--SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
            +  LH +A     ++ ++LL  G   +  D  G    + A   G    +   V K N  
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWR 120

Query: 164 PDVPDNDG-RSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
                  G ++  + A        +   L              + +H     G+++   +
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMIL 179

Query: 223 LVQAGKKEDLMVTDNTGLTPA-QLASDKNHRQVAFFLGNARRLLDKRCDGNSP 274
           L+           ++    P  +LA D    ++       + L     +  S 
Sbjct: 180 LLDYM--TSTNTNNSLLFIPDIKLAIDNKDIEM------LQALFKYDINIYSA 224

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  128 bits (324), Expect = 2e-33
 Identities = 34/216 (15%), Positives = 66/216 (30%), Gaps = 19/216 (8%)

Query: 73  YALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNA 132
             L             ++     D   AD  G +A +++     +++   LL  GA  N 
Sbjct: 2   MDLSRINTWKSKQLKSFL--SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 133 ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF 192
            +       H AA    T  +  ++     D    D+ G + L++A   G    ++L + 
Sbjct: 60  LE--NEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 193 LDAYRGRQDKEG-CTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 251
            +       K G  T  + A +  ++   +  +               L+   +     H
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGH 173

Query: 252 RQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPAL 287
             +         LLD     N      + L   P +
Sbjct: 174 VDM------MILLLDYMTSTN----TNNSLLFIPDI 199

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  126 bits (320), Expect = 7e-33
 Identities = 24/212 (11%), Positives = 66/212 (31%), Gaps = 14/212 (6%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + AA   D + ++ L+   G   S+ D  G  AL +A  +      +  ++    +    
Sbjct: 67  HQAATLEDTKIVKILLF-SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG 125

Query: 102 HTG-QTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
            TG +T+ + + +   + +    L E               H+  + G    +  ++   
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDY- 183

Query: 161 NADPDVPDNDGRSP-LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEA 219
               +  ++    P +  A      + ++ L   D      +    +      +  + E 
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-----NIY--SANLENVLLDDAEI 236

Query: 220 CTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 251
             ++++     +      T        +  + 
Sbjct: 237 AKMIIEKHV--EYKSDSYTKDLDIVKNNKLDE 266

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.2 bits (178), Expect = 5e-14
 Identities = 9/110 (8%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGY-YALQWAALNNRTAAAQYIIEHGGDVNAA 100
           +     G ++ +  L++    S +  + L +   ++ A  N      Q + ++  ++   
Sbjct: 166 HITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-- 222

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
                +A   + +    ++A++++ +     +             +  + 
Sbjct: 223 -----SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 8/84 (9%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             A    D+E LQ L +    ++   +           L +    A+ IIE   +  +  
Sbjct: 200 KLAIDNKDIEMLQALFK-YDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSDS 251

Query: 102 HTGQTALHWSAVRGAIQVAELLLR 125
           +T    +  +     I      LR
Sbjct: 252 YTKDLDIVKNNKLDEIISKNKELR 275

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  145 bits (369), Expect = 2e-40
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 8/211 (3%)

Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           V+ A    +      L   E   +     +            RT      +     V   
Sbjct: 16  VFRALYTFEPRTPDELYI-EEGDIIYITDMSDTNWWKGTSKGRTG-----LIPSNYVAEQ 69

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
             +    LH +A RG +      L     VN  D  G    + A   G    +  + ++ 
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQP 129

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
           N + +  +  G + LH AA+KG+AD ++LLL   A    ++ E       A         
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLL 189

Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 251
                      L  ++       + +  ++H
Sbjct: 190 KKKQGTDAVRTL--SNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  135 bits (342), Expect = 1e-36
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 15/192 (7%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
           G   +  A           +    GD+        T       +G        L     V
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIPSNYV 66

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
                      H AA+ G  ++L   +       +  D  G + L+WA + G  D + +L
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 191 LFLDAYRG----RQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
                       +Q+K G T LH AA +G  +   +L+  G      + +        +A
Sbjct: 126 F---TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA--RTDLRNIEKKLAFDMA 180

Query: 247 SDKNHRQVAFFL 258
           ++     +    
Sbjct: 181 TNAACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  129 bits (327), Expect = 1e-34
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 8/177 (4%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           +   + G    +      E              L  AA     +  +  +++   VN  D
Sbjct: 50  WKGTSKGRTGLIPSNYVAEQ------AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD 103

Query: 102 HTGQTALHWSAVRGAIQVAELLLRE-GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
             G TAL+W+   G   + E+L  +    +N  +  G    H AA  G    +  +++K 
Sbjct: 104 KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK- 162

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
            A  D+ + + +     A     A  ++     DA R   + E       + +  + 
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  111 bits (279), Expect = 5e-28
 Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 9/162 (5%)

Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
                 GQ  +  +      +  + L  E   +                 G+T  +    
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPS-- 63

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
                          +PLH AA +G    +R  L         DK G T L+WA   G+ 
Sbjct: 64  ----NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 218 EACTVLV-QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           +   +L  Q     +L   +  G T    A+ K +  +   L
Sbjct: 120 DIVEMLFTQPN--IELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 16/109 (14%), Positives = 27/109 (24%), Gaps = 13/109 (11%)

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
           P  P   G+  +  A Y         L   +           T       +G       L
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG----L 60

Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGN 272
           + +     +     +   P   A+ + +          R  LD R   N
Sbjct: 61  IPSN---YVAEQAESIDNPLHEAAKRGNLSW------LRECLDNRVGVN 100

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  146 bits (371), Expect = 2e-40
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 13/222 (5%)

Query: 44  AAAYGDLEKLQRLVEC---EGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           A  + +      ++     +   ++  + L    L  A + N+   A+ ++  G D    
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGA------RVNAADMYGYQTTHVAAQYGQTAFLY 154
           D  G T LH +  +G +    +L +          + A +  G+   H+A+ +G    + 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 155 HIVSKWNADPDVPDN-DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAI 213
            +VS   AD +  +  +GR+ LH A      D + LLL   A   R   +G +P      
Sbjct: 135 LLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 193

Query: 214 RGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA 255
           R +      L Q     + +             ++    +  
Sbjct: 194 RPSTRIQQQLGQLTL--ENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  141 bits (359), Expect = 1e-38
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 12/195 (6%)

Query: 74  ALQWAALNNRTAAAQYIIE----HGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
            L  A ++   A    +I         +N  ++  QT LH + +    ++AE LL  G  
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70

Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSK-----WNADPDVPDNDGRSPLHWAAYKGFA 184
               D  G    H+A + G  A +  +         ++     + +G + LH A+  G+ 
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 185 DCIRLLLFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA 243
             + LL+ L A    Q+   G T LH A    N +  ++L++ G   D+      G +P 
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA--DVNRVTYQGYSPY 188

Query: 244 QLASDKNHRQVAFFL 258
           QL   +   ++   L
Sbjct: 189 QLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  117 bits (295), Expect = 6e-30
 Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 99  AADHTGQTALHWSAVRG----AIQVAELLLREGARVNAADMYGYQTT-HVAAQYGQTAFL 153
                G + LH + +       ++V   +  + A +N  +    QT  H+A    Q    
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ-QTPLHLAVITNQPEIA 61

Query: 154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGR------QDKEGCTP 207
             ++     DP++ D  G +PLH A  +G    + +L                +  G T 
Sbjct: 62  EALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

Query: 208 LHWAAIRGNLEACTVLVQAGKKEDLMVTDNT-GLTPAQLASDKNHRQVAFFL 258
           LH A+I G L    +LV  G   D+   +   G T   LA D  +  +   L
Sbjct: 121 LHLASIHGYLGIVELLVSLGA--DVNAQEPCNGRTALHLAVDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.3 bits (129), Expect = 5e-08
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A    + + +  L++C G  V+     GY   Q       T   Q + +   +       
Sbjct: 158 AVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 216

Query: 104 GQTALHWSAVRGAIQVAE 121
            +    +       +  E
Sbjct: 217 SEDEESYDTESEFTEFTE 234

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  149 bits (378), Expect = 5e-40
 Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 27/239 (11%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AA  G+ EKL  L+     +    DG     L  AA  NR    Q +++HG DV+A D  
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G   LH +   G  +V ELLL+ GA VNA D++ +   H AA   +      ++S   AD
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GAD 149

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLL-----LFLDAYRG----------------RQDK 202
           P + +  G+S +  A      + +        L   A                   +Q +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209

Query: 203 EGCTPLHWAAIRG---NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
              T LH A         +   +L++ G   ++   +   +TP  +A+++ H  V   L
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGA--NVNEKNKDFMTPLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  136 bits (346), Expect = 1e-35
 Identities = 44/202 (21%), Positives = 68/202 (33%), Gaps = 15/202 (7%)

Query: 60  EGCSVSEPDGLGYYALQWAA-LNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
                          L  AA   N       +     + +A+D    T LH +A    ++
Sbjct: 13  PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR 72

Query: 119 VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWA 178
           + +LLL+ GA V+A D  G    H A  YG       ++    A  +  D    +PLH A
Sbjct: 73  IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEA 131

Query: 179 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 238
           A K   +   LLL   A     +  G + +  A      E  T   +             
Sbjct: 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK------------- 178

Query: 239 GLTPAQLASDKNHRQVAFFLGN 260
           G +  Q A + +  +V   L  
Sbjct: 179 GHSLLQAAREADLAKVKKTLAL 200

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  135 bits (342), Expect = 4e-35
 Identities = 43/192 (22%), Positives = 70/192 (36%), Gaps = 8/192 (4%)

Query: 87  AQYIIEHGGDVNAADHTGQTALHWSAVRG-AIQVAELLLREGARVNAADMYGYQTT--HV 143
           A  + +            +  L  +A  G   ++  LL       +A+D      T  H+
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS--TPLHL 64

Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
           AA Y +   +  ++    AD    D  G  PLH A   G  +   LLL   A     D  
Sbjct: 65  AAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123

Query: 204 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
             TPLH AA +  +E C++L+  G   D  + +  G +   +A     R+   +      
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGA--DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 264 LLDKRCDGNSPI 275
           LL    + +   
Sbjct: 182 LLQAAREADLAK 193

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  134 bits (340), Expect = 6e-35
 Identities = 44/220 (20%), Positives = 74/220 (33%), Gaps = 19/220 (8%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + A +YG  E  + L++  G  V+  D   +  L  AA  NR      ++ HG D    +
Sbjct: 96  HNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
             G++A+  +      +      +  + +             A +         +     
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLL-----------QAAREADLAKVKKTLAL--E 201

Query: 162 ADPDVPDNDGRSPLHWAAYKGFA---DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
                      + LH A             LLL   A    ++K+  TPLH AA R + +
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261

Query: 219 ACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
              VL + G    +   D+ G T    A+   H Q    L
Sbjct: 262 VMEVLHKHG--AKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  119 bits (301), Expect = 1e-29
 Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALN---NRTAAAQYIIEHGGDVNAA 100
           AA   DL K+++ +  E  +  +P      AL  A  +    R   A+ ++  G +VN  
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQS-HETALHCAVASLHPKRKQVAELLLRKGANVNEK 243

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
           +    T LH +A R    V E+L + GA++NA D  G    H AA  G       ++S  
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY- 302

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN 216
            +DP +    G +           + ++ +L         D +    L  A+  G+
Sbjct: 303 GSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDY--RLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (293), Expect = 1e-28
 Identities = 44/191 (23%), Positives = 65/191 (34%), Gaps = 26/191 (13%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             A      E+L                   ++L  AA     A  +  +          
Sbjct: 162 DMAPTPELRERLTYE-------------FKGHSLLQAAREADLAKVKKTLALEIINFKQP 208

Query: 102 HTGQTALHWSAVRG---AIQVAELLLREGARVNAADMYGYQTT--HVAAQYGQTAFLYHI 156
            + +TALH +         QVAELLLR+GA VN  +      T  HVAA+      +  +
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM--TPLHVAAERAHNDVMEVL 266

Query: 157 VSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN 216
                A  +  D+ G++ LH AA  G     RLLL   +       +G T          
Sbjct: 267 HKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN---- 321

Query: 217 LEACTVLVQAG 227
            EA   ++   
Sbjct: 322 -EAVQQILSES 331

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  101 bits (254), Expect = 1e-23
 Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 2/140 (1%)

Query: 119 VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWA 178
            A  L    A+      Y       AA+ G    L  +++  N +    D    +PLH A
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

Query: 179 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNT 238
           A       ++LLL   A    +DK G  PLH A   G+ E   +L++ G    +   D  
Sbjct: 66  AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNAMDLW 123

Query: 239 GLTPAQLASDKNHRQVAFFL 258
             TP   A+ KN  +V   L
Sbjct: 124 QFTPLHEAASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.1 bits (248), Expect = 1e-22
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 16/162 (9%)

Query: 27  SNGVVVDEESLRNDVYTA---AAYGDLEKLQRLVEC---EGCSVSEPDGLGYYALQWAAL 80
           +  ++  ++       TA   A      K +++ E    +G +V+E +      L  AA 
Sbjct: 199 ALEIINFKQP--QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256

Query: 81  NNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQT 140
                  + + +HG  +NA D  GQTALH +A+ G +Q   LLL  G+  +   + G+  
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316

Query: 141 THVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG 182
             +  +  Q   L       +      D D    L  A+  G
Sbjct: 317 AQMGNEAVQQ-ILSE-----STPMRTSDVDY--RLLEASKAG 350

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  145 bits (367), Expect = 6e-40
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 4/203 (1%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
               A         + I+         D   +TALHW+   G  ++ E LL+ G  VN  
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
           D  G+   H+AA  G    +  ++ K  A  +  + +G +PLH+AA K   +   +LL  
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128

Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ 253
            A    +D    T +H AA +GNL+   +L+         + D  G TP  LA D+   +
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA--STNIQDTEGNTPLHLACDEERVE 186

Query: 254 VA-FFLGNARRLLDKRCDGNSPI 275
            A F +     +  +  +  +P+
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPL 209

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  139 bits (352), Expect = 6e-38
 Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 6/215 (2%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A +    E  +R++  +    +  D     AL WA     T   +++++ G  VN  D  
Sbjct: 14  AYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G + LH +A  G  ++ + LL +GA VNA +  G    H AA   +      ++    A+
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GAN 131

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
           PD  D+   + +H AA KG    + +LLF  A    QD EG TPLH A     +E    L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           V  G    + + +    TP Q+A       +    
Sbjct: 192 VTQGA--SIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (278), Expect = 8e-28
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 10/183 (5%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA---FLYHIVSKW 160
                + +      ++ E +L + +     D       H A   G T    FL   +   
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL---LQL- 62

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
               +  D+ G SPLH AA  G  + ++ LL   A+    ++ GCTPLH+AA +   E  
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122

Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA-FFLGNARRLLDKRCDGNSPIGKIS 279
            +L++ G   +    D+   T    A+ K + ++    L        +  +GN+P+    
Sbjct: 123 VMLLEGGA--NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180

Query: 280 KLG 282
              
Sbjct: 181 DEE 183

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.6 bits (165), Expect = 7e-13
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 169 NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK 228
                  + A      +    +L   +   R D++  T LHWA   G+ E    L+Q G 
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 229 KEDLMVTDNTGLTPAQLASDKNHRQVA-FFLGNARRLLDKRCDGNSPIGKISKLG 282
              +   D+ G +P  +A+     ++    L     +     +G +P+   +   
Sbjct: 65  --PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 65.3 bits (159), Expect = 4e-12
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 14  SSQNHHNHDQSSPSNGVVVDEESL--RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLG 71
           +S+N H         G   D +       ++ AAA G+L+ +  L+     S +  D  G
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEG 172

Query: 72  YYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
              L  A    R   A++++  G  +   +   +T L  +   G + +    L EG   +
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  142 bits (361), Expect = 8e-40
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 1/154 (0%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
           ++   A           IE    +N  D  G T L W+A  G I V E LL+ GA     
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
                    +A   G T  +  ++     D +  D +G +PL +A +     C+++LL  
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124

Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
            A    +   G   +  A   G      V+    
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  129 bits (327), Expect = 4e-35
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 9/158 (5%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS---KW 160
              ++H  A +G +      + +   +N  D  G+     AA +GQ A    +V    + 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIA----VVEFLLQN 58

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
            ADP +      S L  A  KG+ D +++LL         D  G TPL +A    +++  
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            +L+++G   D  +  ++G     LA    +R V   +
Sbjct: 119 KMLLESGA--DPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.4 bits (197), Expect = 2e-17
 Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 1/93 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             A + G  + ++ L++C G  V+E D  G   L +A   N     + ++E G D     
Sbjct: 74  SLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
            +G  ++  +   G   V +++     ++    
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.5 bits (187), Expect = 3e-16
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
                +H  A +G    +   +  +      D+EG TPL WAA  G +     L+Q G  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-- 59

Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            D  +      +   LA  K +  +   L
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVKML 88

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  146 bits (370), Expect = 1e-39
 Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 10/215 (4%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A + GD E++ RL+E  G  ++  +  G  AL  A +++     ++++E+G ++N  D+ 
Sbjct: 47  ACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G   LH +A  G + +AE L+ +GA V A +  G     +A +      L + V++    
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV- 164

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
                 D  +           D  + L        R  K G T LH AA +G  E   +L
Sbjct: 165 ------DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           +QA    D+ + D  G TP   A+     +    L
Sbjct: 219 IQAR--YDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  144 bits (366), Expect = 5e-39
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 12/215 (5%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + A    +++ ++ LVE  G ++++PD  G+  L  AA       A+Y+I  G  V A +
Sbjct: 78  HQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136

Query: 102 HTGQTALHWSAVRGAIQVAELLLRE-GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
             G T L  +      ++ +  +   G  + AA     +     A+          ++  
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR--------QWLNSG 188

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
           + +       G + LH AA KG+ + ++LL+        +D +G TPLH AA  G  EAC
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA 255
            +LV+     D+   +  G T   +A +     + 
Sbjct: 249 RILVENLC--DMEAVNKVGQTAFDVADEDILGYLE 281

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  132 bits (335), Expect = 1e-34
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 11/215 (5%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
               G    L+  V  +          G      A  +  T     ++E G D+N A+  
Sbjct: 15  KRWIGSETDLEPPVV-KRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADINYANVD 72

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G TALH + +   + + + L+  GA +N  D  G+   H AA  G      +++S+  A 
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAH 131

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
               +++G +PL  A  +   + ++  +       RQ  +              +A   L
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEV------NRQGVDIEAARKEEERIMLRDARQWL 185

Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
                 +       +G T   +A+ K + +V   L
Sbjct: 186 NSGHINDV--RHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  115 bits (291), Expect = 9e-29
 Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 4/162 (2%)

Query: 97  VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHI 156
           +  AD   +         G+    E  + +  +       G      A   G T  +  +
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 157 VSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN 216
           + +  AD +  + DG + LH A      D ++ L+   A   + D EG  PLH AA  G 
Sbjct: 60  LER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118

Query: 217 LEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           L+    L+  G    +   ++ G TP  +A ++   ++    
Sbjct: 119 LDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  105 bits (264), Expect = 3e-25
 Identities = 43/211 (20%), Positives = 70/211 (33%), Gaps = 22/211 (10%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
            NG  +++    N+ +     AA+ G L+  + L+  +G  V   +  G   L  A    
Sbjct: 94  ENGANINQPD--NEGWIPLHAAASCGYLDIAEYLIS-QGAHVGAVNSEGDTPLDIAEEEA 150

Query: 83  RTAAAQYIIEHGG-DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT 141
                Q  +   G D+ AA    +  +            + L             G    
Sbjct: 151 MEELLQNEVNRQGVDIEAARKEEERIML-------RDARQWLNSGHINDVRHAKSGGTAL 203

Query: 142 HVAAQYGQT---AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRG 198
           HVAA  G T     L   +     D ++ D DG +PLH AA+ G  +  R+L+       
Sbjct: 204 HVAAAKGYTEVLKLL---IQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259

Query: 199 RQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
             +K G T    A          +  +    
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  104 bits (261), Expect = 7e-25
 Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 8/162 (4%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             A      E LQ  V  +G  +         A +         A Q++     +     
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEA-------ARKEEERIMLRDARQWLNSGHINDVRHA 196

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
            +G TALH +A +G  +V +LL++    VN  D  G+   H AA +G+      +V    
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN-L 255

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
            D +  +  G++    A          L    +     + ++
Sbjct: 256 CDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  141 bits (358), Expect = 5e-39
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 16/198 (8%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
               L+ A   +     + + +    V+  D  G T L+ +     I++A+ L+  GA +
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           N  +         A   G+T  L +++     D +  +  G + L  AA KG  D ++LL
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125

Query: 191 LFLDAYRGR-----QDKEGCTPLHWAAI-----RGNLEACTVLVQAGKKEDLMVTDNTGL 240
           L      GR     Q+  G T L  A       +   +   +L++ G   D  + DN+G 
Sbjct: 126 LE----DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG--ADQSIKDNSGR 179

Query: 241 TPAQLASDKNHRQVAFFL 258
           T    A+ K + +++  L
Sbjct: 180 TAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  139 bits (352), Expect = 3e-38
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 7/190 (3%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             A      +  + L +     V E D  G   L  A  NN    A+ +I+ G D+N  +
Sbjct: 11  EAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN 69

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGAR-VNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
               +   ++  +G  ++   +L+     +N  + YG      AA+ G    +  ++   
Sbjct: 70  SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129

Query: 161 NADPDVPDNDGRSPLHWAA-----YKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG 215
             D D  ++ G + L  A       + + D ++LL+   A +  +D  G T + +A  +G
Sbjct: 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189

Query: 216 NLEACTVLVQ 225
             E   +L Q
Sbjct: 190 YTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  111 bits (279), Expect = 3e-28
 Identities = 29/164 (17%), Positives = 68/164 (41%), Gaps = 8/164 (4%)

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
            +     L  +  R   +V E+L     +V+  D  G    ++A           ++ + 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR- 61

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR-GRQDKEGCTPLHWAAIRGNLEA 219
            AD ++ ++   SP  +A  +G  + +  +L        + ++ G   L  AA +G+++ 
Sbjct: 62  GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121

Query: 220 CTVLVQAGKKEDLMVTDNTGLTPAQLA-----SDKNHRQVAFFL 258
             +L++ G +ED+   ++ G T    A      ++ ++ +   L
Sbjct: 122 VKLLLEDG-REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 200 QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           +  E    L  A  R   +   +L        +   D  G TP  +A   N  ++A  L
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTY--QVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  139 bits (352), Expect = 2e-38
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 2/158 (1%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
               +          A +  +++   D+N  D  G + LHW+   G   V E+L+  GAR
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64

Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
           +N  +       H+AA +G    +  ++    AD +  +  G  PLH+A + G       
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAED 123

Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           L+   A     +K G  P+  A             + G
Sbjct: 124 LVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  129 bits (327), Expect = 5e-35
 Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           +T    G+   ++  ++     +++ D  G+  L WA    R+A  + +I  G  +N  +
Sbjct: 10  FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
               T LH +A  G   + + LL+  A +NA + +G    H A  +GQ      +V+   
Sbjct: 70  RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-G 128

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
           A   + +  G  P+  A              +             P      +G  
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ------NLNRIPYKDTFWKGTT 178

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  136 bits (345), Expect = 1e-37
 Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 1/152 (0%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
            L  AA   R    + ++ +G DVNA D +G T LH +A  G +++ E+LL+ GA VNA 
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
           D  G     +AA +G    +  ++    AD +  D +G +PLH AA  G  + + +LL  
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135

Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
            A    QDK G T    +   GN +   +L +
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  138 bits (349), Expect = 2e-37
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 7/204 (3%)

Query: 67  PDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLRE 126
           P+  G  +L      N        I HG  V          L  S++ G   + + ++ E
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYE 59

Query: 127 GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADC 186
               +  +  G    H A   G T  +  +V     + +  D+DG +PLH AA       
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 187 IRLLLFLDAY---RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA 243
            + L+   A        D +           G  +    L      E + + +   +   
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ--EKMGIMNKGVIYAL 176

Query: 244 QLASDKNHRQVAFFLGNARRLLDK 267
                +N  ++    G+   ++ +
Sbjct: 177 WDYEPQNDDELPMKEGDCMTIIHR 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  129 bits (326), Expect = 3e-34
 Identities = 43/223 (19%), Positives = 70/223 (31%), Gaps = 23/223 (10%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
                    +     +   G  V   + L    L  ++L       Q II    D +  +
Sbjct: 10  PPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
             G TALH +   G  ++ + L++ G  VNAAD  G+   H AA          +V    
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-G 126

Query: 162 ADP---DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
           A        D    +       +G+  C + L  +    G  +K     L     + + E
Sbjct: 127 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186

Query: 219 ACTVLVQAG------KKEDLMVT--------DNTGLTPAQLAS 247
              + ++ G       +ED            D  G  P  L  
Sbjct: 187 ---LPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  141 bits (357), Expect = 4e-37
 Identities = 35/237 (14%), Positives = 64/237 (27%), Gaps = 30/237 (12%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAAL--NNRTAAAQYIIEHGGDVNA 99
                  + E  +                G  AL W            + +++ G    A
Sbjct: 116 SLLNECDEREVNEIGSH-------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168

Query: 100 ADHTGQTALHWSAVRGAIQVAELLL-----REGARVNAADMYGYQTTHVAAQYGQTAFLY 154
            D   +T L  +      +  +L++     +   R++ A+  G    H A          
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQ-------------D 201
             V     D ++ DN+   PL+ +         + LL        Q              
Sbjct: 229 RFVEM-GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 202 KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
                 +  AA     E   +L +     +++ + NTG   A     K    V    
Sbjct: 288 VVWLDFVPAAADPSKQEVLQLLQEKLD--EVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  129 bits (327), Expect = 5e-33
 Identities = 40/205 (19%), Positives = 68/205 (33%), Gaps = 19/205 (9%)

Query: 56  LVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRG 115
           + +    +  + D      +  AA   +T   + +IE G      +  G TALH +   G
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 116 AIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPL 175
            +  A+ L   G   +     G +  H+A    +T  +  +V             G+ P 
Sbjct: 65  CVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEG-------AKERGQMPE 115

Query: 176 HWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN--LEACTVLVQAGKKEDLM 233
                    +   +          +  +G T LHW    G   LE   +LVQ G      
Sbjct: 116 SLLNECDEREVNEIG--SHV----KHCKGQTALHWCVGLGPEYLEMIKILVQLG--ASPT 167

Query: 234 VTDNTGLTPAQLASDKNHRQVAFFL 258
             D    TP   A +  +R+    +
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  126 bits (319), Expect = 5e-32
 Identities = 26/209 (12%), Positives = 53/209 (25%), Gaps = 27/209 (12%)

Query: 42  YTAAAYGDLEKLQRLVECEGCS----VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV 97
             A  + + E L  +++         +   +  G   L WA L N    A   +E G DV
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV 237

Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
           N  D+     L+ S     + + + LL++                               
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY-------------------- 277

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
                            +  AA     + ++LL        R    G         +   
Sbjct: 278 -HNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAP 336

Query: 218 EACTVLVQAGKKEDLMVTDNTGLTPAQLA 246
               + +       +     +    + ++
Sbjct: 337 AVKRMKLAPSA--PVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =   99 bits (250), Expect = 6e-23
 Identities = 27/179 (15%), Positives = 47/179 (26%), Gaps = 49/179 (27%)

Query: 96  DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYH 155
           +   +D      +H +A +G       L+  G      +                     
Sbjct: 12  NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN--------------------- 50

Query: 156 IVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG 215
                          G + LH A   G  D  + L  +          G  P+H A +  
Sbjct: 51  -------------RFGCTALHLACKFGCVDTAKYLASVGE--VHSLWHGQKPIHLAVMAN 95

Query: 216 NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSP 274
             +    LV+             G  P  L ++ + R+V     +      K C G + 
Sbjct: 96  KTDLVVALVEGA--------KERGQMPESLLNECDEREVNEIGSHV-----KHCKGQTA 141

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.1 bits (201), Expect = 1e-16
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 155 HIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIR 214
            +      +    D++    +H AA KG  D +R L+        Q++ GCT LH A   
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 215 GNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           G ++    L   G+      +   G  P  LA   N   +   L
Sbjct: 64  GCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVAL 103

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  135 bits (342), Expect = 8e-37
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 1/161 (0%)

Query: 68  DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREG 127
           D      L  A +     A   ++E+   +   D  G TAL W+     + +AE LL +G
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91

Query: 128 ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
           + VN  D  G      +  +G +   Y ++    A+ +  + +G +PL  A+  G ++ +
Sbjct: 92  SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIV 150

Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK 228
           + LL L A    +D  G T    A I G  E   +  +  +
Sbjct: 151 KKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  127 bits (323), Expect = 3e-34
 Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 8/183 (4%)

Query: 81  NNRTA---AAQYIIEHGGDV--NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADM 135
           N         +  I    D   N  D   +T L  + + G     + L+    ++   D+
Sbjct: 7   NGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI 66

Query: 136 YGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA 195
            G      A +  +      ++SK  ++ +  D  G++PL W+   G+++    LL   A
Sbjct: 67  EGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125

Query: 196 YRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA 255
               ++ EG TPL  A+  G  E    L++ G   D+   D TGLT    A     ++V 
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGA--DISARDLTGLTAEASARIFGRQEVI 183

Query: 256 FFL 258
              
Sbjct: 184 KIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (253), Expect = 1e-24
 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 9/161 (5%)

Query: 98  NAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
           +  D  G+        +   Q  + L       N  D Y      VA   G    +  +V
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
                  +  D +G + L WA           LL   +    +D  G TPL W+ I G  
Sbjct: 56  EN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS 114

Query: 218 EACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           E    L++ G   ++   +  G TP  +AS     ++   L
Sbjct: 115 EMSYFLLEHGA--NVNDRNLEGETPLIVASKYGRSEIVKKL 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  133 bits (338), Expect = 9e-37
 Identities = 42/147 (28%), Positives = 56/147 (38%), Gaps = 10/147 (6%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
            L  AA   R    + ++E G + NA +  G+  +    + G+ +VAELLL  GA  N A
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCA 73

Query: 134 DMYGYQTT--HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
           D     T   H AA+ G    L  +     A  DV D  GR P+  A   G  D  R L 
Sbjct: 74  DPATL-TRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLR 131

Query: 192 FLDAYRGRQDKEGCTPLHWAAIRGNLE 218
                       G       A  G  +
Sbjct: 132 AAAG-----GTRGSNHARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  121 bits (305), Expect = 3e-32
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 91  IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
           +E     +         L  +A RG ++    LL  GA  NA + YG +   V    G  
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 151 AFLYHIVSKWNADPDVPDNDGR-SPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
                ++    A+P+  D      P+H AA +GF D + +L    A    +D  G  P+ 
Sbjct: 58  RVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116

Query: 210 WAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA 255
            A   G+ +    L  A            G   A++ + +    + 
Sbjct: 117 LAEELGHRDVARYLRAAA-------GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.8 bits (203), Expect = 2e-18
 Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 12/126 (9%)

Query: 27  SNGVVVDEESLRNDVYTA---AAYGDLEKLQRLVECEGCSVSEPDGLGY-YALQWAALNN 82
             G   +  +  +           G     + L+   G   +  D       +  AA   
Sbjct: 33  EAGANPNAPN--SYGRRPIQVMMMGSARVAELLLL-HGAEPNCADPATLTRPVHDAAREG 89

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTH 142
                  +   G  ++  D  G+  +  +   G   VA  L         ++        
Sbjct: 90  FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HAR 144

Query: 143 VAAQYG 148
           + A  G
Sbjct: 145 IDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + AA  G L+ L  L    G  +   D  G   +  A        A+Y+    G      
Sbjct: 83  HDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--- 138

Query: 102 HTGQTALHWSAVRGAIQVAE 121
             G       A  G   + +
Sbjct: 139 --GSNHARIDAAEGPSDIPD 156

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  134 bits (339), Expect = 5e-36
 Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 34/228 (14%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV-----N 98
           AA   D++ L +L++ EGC V +   +G  AL  AAL +   AA  ++E   ++      
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
           +  + GQTALH + +   + +   LL  GA V+A                          
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR---------------- 113

Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
                P      G  PL +AA  G  + +RLL+   A    QD  G T LH   ++ N  
Sbjct: 114 -----PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKT 168

Query: 219 ACT----VLVQAG----KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
                  +L+        K   +V +N GLTP +LA  + +  +   L
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =   99 bits (250), Expect = 5e-24
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 20/175 (11%)

Query: 104 GQTALHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYG--QTA--FLYHIVS 158
            ++ L  +A    +Q +++LL  EG  V+     G    H+AA Y   + A   +     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-------------FLDAYRGRQDKEGC 205
                      +G++ LH A      + +R LL                         G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 206 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN 260
            PL +AA  G+ E   +L++ G   D+   D+ G T   +   + ++  A  + N
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGA--DIRAQDSLGNTVLHILILQPNKTFACQMYN 175

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 99.6 bits (249), Expect = 6e-24
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 26/174 (14%)

Query: 44  AAAYGDLEKLQRLVE----CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA 99
           AA Y +LE    L+E         ++     G  AL  A +N      + ++  G  V+A
Sbjct: 44  AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103

Query: 100 AD-------------HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ 146
                          + G+  L ++A  G+ ++  LL+  GA + A D  G    H+   
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163

Query: 147 YGQTAFLYHIVS---KWNAD------PDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                F   + +    ++          VP+N G +P   A  +G     + L+
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  130 bits (331), Expect = 9e-36
 Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 2/148 (1%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
               L  AA   +    + ++ +G      D  G + LH +A  G     E+LLR G   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           +A         H+AA  G    +  ++    AD +  D    + LHWA      + + LL
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 191 LFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
           +   A    Q K   T    +   GN +
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNED 147

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  113 bits (285), Expect = 2e-29
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 3/149 (2%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             AA  G  ++++ L+   G   +  D LG   L  AA     +  + ++  G   +A  
Sbjct: 7   LEAARAGQDDEVRILMAN-GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
              +T LH +A  G   + E+LL+ GA VNA DM      H A ++     +  ++    
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-G 123

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           AD        ++    +   G  D   +L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.9 bits (162), Expect = 5e-13
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
           D    L  AA  G  D +R+L+   A     D  G +PLH AA  G+     VL++AG  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG-- 57

Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
                      TP  +A+ + H  +   L
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVL 86

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  131 bits (332), Expect = 4e-35
 Identities = 39/201 (19%), Positives = 67/201 (33%), Gaps = 10/201 (4%)

Query: 60  EGCSVSEPDGLGYY---ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA 116
           +  S  +           L  AAL       Q  ++   D +  +  G TALH +     
Sbjct: 7   KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGAN 66

Query: 117 IQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-NDGRSPL 175
             + + L+  GA VN+ D +G+   H AA    T     +V    A       +DG +  
Sbjct: 67  YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAF 125

Query: 176 HWAA--YKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 233
                  +G+ADC   L  ++   G  +      L   +     E   +  + G+   ++
Sbjct: 126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE---LSFREGESVTVL 182

Query: 234 VTDNTGLTPAQLASDKNHRQV 254
             D    T    A+       
Sbjct: 183 RRDGPEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  120 bits (302), Expect = 5e-31
 Identities = 30/193 (15%), Positives = 68/193 (35%), Gaps = 9/193 (4%)

Query: 88  QYIIEHGGDVNAADH---TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVA 144
           + ++   G    A          L  +A+ G ++V +  ++E    +  +  G    H A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 145 AQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-KE 203
                 + +  +++   A+ + PD+ G +PLH AA          L+   A        +
Sbjct: 62  ICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 204 GCTPLHWAAI--RGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA 261
           G T          G  +  T L      + + + ++  +      S +   +++F  G +
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVE--QSMGLMNSGAVYALWDYSAEFGDELSFREGES 178

Query: 262 RRLLDKRCDGNSP 274
             +L +     + 
Sbjct: 179 VTVLRRDGPEETD 191

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  129 bits (326), Expect = 4e-35
 Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 4/152 (2%)

Query: 74  ALQWAALNNRTAAAQY-IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNA 132
            L  AA        +  +       +A +  G+TAL    + G+  +A  LL++GA  N 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV 63

Query: 133 ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF 192
            D  G    H AA+ G    L  +V    AD +VPD  G  P+H A  +G    +  L  
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA- 121

Query: 193 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV 224
            ++   R+D  G TPL  A  RG  +   +L 
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  127 bits (322), Expect = 2e-34
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 9/151 (5%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AAA GD+++++RL+  E       +  G  ALQ       TA A  +++ G   N  D +
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS 67

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA---FLYHIVSKW 160
           G + +H +A  G +   ++L+  GA VN  D  G    H+A Q G TA   FL       
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA----- 122

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
            +D    D  G +PL  A  +G  D + +L 
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 88.6 bits (221), Expect = 8e-21
 Identities = 42/156 (26%), Positives = 55/156 (35%), Gaps = 38/156 (24%)

Query: 104 GQTALHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
               L  +A RG +Q V  LL RE    +A +                            
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALN---------------------------- 33

Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
                   G++ L    + G       LL   A    QD  G +P+H AA  G L+   V
Sbjct: 34  ------RFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKV 86

Query: 223 LVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           LV+ G   D+ V D TG  P  LA  + H  V  FL
Sbjct: 87  LVEHGA--DVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  128 bits (324), Expect = 1e-34
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
            L  AA          ++++  +VNA +  G+TAL      G  ++A  LL  GA  +  
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLK 66

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
           D  G+   H AA+ G    L  ++    AD ++ DN+G  PLH AA +G    +  L+  
Sbjct: 67  DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125

Query: 194 DAYR-GRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
            A   G ++ +G T    A + G  E  +++   G
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  115 bits (291), Expect = 3e-30
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 3/155 (1%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
               L  +A RG ++    LL+    VNA + +G     V    G       ++ +  A+
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR-GAN 62

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
           PD+ D  G + +H AA  GF D ++ LL   A    +D EG  PLH AA  G+L     L
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           V+     ++   ++ G T   LA      +V   +
Sbjct: 123 VKHT-ASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 71.6 bits (177), Expect = 6e-15
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG-GDVNAA 100
           + AA  G L+ LQ L+E     V+  D  G   L  AA        +++++H   +V   
Sbjct: 75  HDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGA 128
           +H G TA   + + G  +V  L+   GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
                + L  AA +G  + +  LL  +     Q+  G T L    + GN E    L+  G
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60

Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
              +  + D TG      A+          L
Sbjct: 61  A--NPDLKDRTGFAVIHDAARAGFLDTLQTL 89

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  125 bits (317), Expect = 9e-34
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 3/158 (1%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTALHWSAVRGAIQVAELLLREGAR 129
               L  AA        + +      +    +    T LH++A    + V E LL+ GA 
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67

Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL 189
           V+A D  G    H A  YG       +V    A  +V D    +PLH AA KG  +  +L
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKL 126

Query: 190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           LL   A   +++++G TPL      G+ +   +L    
Sbjct: 127 LLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.8 bits (167), Expect = 2e-13
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
            +G  V  +            A +YG  E  + LV+  G  V+  D   +  L  AA   
Sbjct: 63  QHGADVHAKD--KGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKG 119

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGA 128
           +    + +++HG D    +  G T L      G   + +LL  + A
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAA 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  124 bits (315), Expect = 3e-33
 Identities = 37/171 (21%), Positives = 54/171 (31%), Gaps = 6/171 (3%)

Query: 58  ECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI 117
           E      S   G G         +  + +         DV +     +T    +A +   
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADE 57

Query: 118 QVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-NDGRSPLH 176
           Q    LL E   V+A D  G       A  G    +  +     AD D  D   G + LH
Sbjct: 58  QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALH 115

Query: 177 WAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
            AA     + +  L+ L A    +D+ G T L  A            +Q G
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  115 bits (291), Expect = 4e-30
 Identities = 40/167 (23%), Positives = 55/167 (32%), Gaps = 16/167 (9%)

Query: 97  VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT-HVAAQYGQTA---F 152
            +     G          G            A V +      +T    AA+         
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQ 62

Query: 153 LYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-KEGCTPLHWA 211
           L       + D D  D +GR+ L + A  G   C+RLL    A    +D + G T LH A
Sbjct: 63  LLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 212 AIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           A     E    LV+ G   D+ V D  GLT  +LA +          
Sbjct: 118 AGYVRPEVVEALVELGA--DIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGL-GYYALQWAALNNRTAAAQYIIEHGGDVNAADH 102
            A  G  + ++ L E  G  +   D   G  AL  AA   R    + ++E G D+   D 
Sbjct: 83  VAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141

Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADM 135
            G TAL  +            ++ G R+    +
Sbjct: 142 RGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  123 bits (312), Expect = 4e-32
 Identities = 41/211 (19%), Positives = 66/211 (31%), Gaps = 18/211 (8%)

Query: 65  SEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLL 124
           S   G G         +  + +         DV +     +T    +A +   Q    LL
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL 65

Query: 125 REGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-NDGRSPLHWAAYKGF 183
            E   V+A D  G       A  G    +  +     AD D  D   G + LH AA    
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVR 123

Query: 184 ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPA 243
            + +  L+ L A    +D+ G T L  A            +Q G++  L       +   
Sbjct: 124 PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL-----EKVINV 178

Query: 244 QLASDKNHRQVAFFLGNARRLLDKRCDGNSP 274
                  + +V         +++KR  G   
Sbjct: 179 LEGQVFEYAEVD-------EIVEKRGKGKDV 202

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  122 bits (308), Expect = 1e-31
 Identities = 41/186 (22%), Positives = 64/186 (34%), Gaps = 16/186 (8%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
               AA      A   ++    DV+A D  G+TAL + A  G+ +   LL   GA ++  
Sbjct: 48  PWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

Query: 134 DMYGYQTT-HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF 192
           DM G  T  H+AA Y +   +  +V    AD +V D  G + L  A            + 
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQ 165

Query: 193 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 252
                 R   E    +    +    E   ++ + GK          G     L   K+  
Sbjct: 166 FGR---RIGLEKVINVLEGQVFEYAEVDEIVEKRGK----------GKDVEYLVRWKDGG 212

Query: 253 QVAFFL 258
              +  
Sbjct: 213 DCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  100 bits (252), Expect = 4e-24
 Identities = 34/175 (19%), Positives = 56/175 (32%), Gaps = 16/175 (9%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGL-GYYALQWAALNNRTAAAQYIIEHGGDVNAADH 102
            A  G  + ++ L E  G  +   D   G  AL  AA   R    + ++E G D+   D 
Sbjct: 84  VAGLGSDKCVRLLAE-AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 142

Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
            G TAL  +            ++ G R+    +           +     +  IV K   
Sbjct: 143 RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINV---LEGQVFEYAE-VDEIVEK--- 195

Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
                   G+   +   +K   DC  +     A    +D E    L +A     +
Sbjct: 196 -----RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESVI 243

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  119 bits (302), Expect = 4e-32
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 3/135 (2%)

Query: 94  GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL 153
              ++    +    L  +A RG ++    LL  GA  NA + +G +   V    G     
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60

Query: 154 YHIVSKWNADPDVPDNDGR-SPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA 212
             ++    A+P+  D      P+H AA +GF D + +L    A     D  G  P+  A 
Sbjct: 61  ELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 213 IRGNLEACTVLVQAG 227
            +G+ +    L  A 
Sbjct: 120 EQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 71.3 bits (176), Expect = 4e-15
 Identities = 13/106 (12%), Positives = 28/106 (26%), Gaps = 7/106 (6%)

Query: 27  SNGVVVDEESLRNDVYTA---AAYGDLEKLQRLVECEGCSVSEPDGLGY-YALQWAALNN 82
             G   +  +              G  +  + L+   G   +  D       +  AA   
Sbjct: 33  EAGADPNALN--RFGRRPIQVMMMGSAQVAELLLL-HGAEPNCADPATLTRPVHDAAREG 89

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGA 128
                  +   G  ++  D  G+  +  +  +G   +A  L     
Sbjct: 90  FLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  123 bits (310), Expect = 7e-32
 Identities = 49/261 (18%), Positives = 84/261 (32%), Gaps = 63/261 (24%)

Query: 38  RNDVYTAAAYGDLEKLQRLVE-------CEGCSVSEPDGLGYYALQWAALN---NRTAAA 87
           R+ +++  + G  E+L  L+E           S       G   L  A LN      A  
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 88  QYIIEHGGD-----------VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY 136
             +++   D                + G +ALH +  + ++Q  +LL+  GA V+     
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL---FL 193
            +   H                            G  PL  AA     D +  LL     
Sbjct: 123 RFFQKH---------------------QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161

Query: 194 DAYRGRQDKEGCTPLHWAAI----------------RGNLEACTVLVQAGKKEDLMVTDN 237
            A     D  G T LH   +                 G L+    L    + E+  ++++
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE--ISNH 219

Query: 238 TGLTPAQLASDKNHRQVAFFL 258
            GLTP +LA+ +   ++   +
Sbjct: 220 QGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  107 bits (270), Expect = 2e-26
 Identities = 33/187 (17%), Positives = 52/187 (27%), Gaps = 34/187 (18%)

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD-------------HTGQTA 107
               ++    G+ AL  A         + ++E+G DV+                + G+  
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 108 LHWSAVRGAIQVAELLLREG---ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADP 164
           L  +A      V   LL      A + A D  G    H                      
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD--------------- 184

Query: 165 DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV 224
              ++   S L    Y G       L          + +G TPL  AA  G +E    ++
Sbjct: 185 ---NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241

Query: 225 QAGKKED 231
           Q      
Sbjct: 242 QREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 12/77 (15%), Positives = 24/77 (31%)

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVA 120
              +   +     AL     +        +         ++H G T L  +A  G I++ 
Sbjct: 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237

Query: 121 ELLLREGARVNAADMYG 137
             +L+      AA  + 
Sbjct: 238 RHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
                 G L+   RL           +  G   L+ AA   +    ++I++      AA 
Sbjct: 193 VIHMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAH 251

Query: 102 HTG 104
           H  
Sbjct: 252 HHH 254

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  122 bits (307), Expect = 2e-31
 Identities = 49/275 (17%), Positives = 82/275 (29%), Gaps = 64/275 (23%)

Query: 38  RNDVYTAAAYGDLEKLQRLVE------CEGCSVSEPDG-LGYYALQWAALN---NRTAAA 87
           R  ++ A A  + ++L+ L+                D   G   L  A LN    +    
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 88  QYIIEHGGDVNAA-----------DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY 136
             +++     ++             + GQTALH +  R  + +  LL+  GA V AA   
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL---FL 193
            +                                G  PL  AA       ++ LL   + 
Sbjct: 134 DFFKKT--------------------KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173

Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLE---------ACTVLVQAGKK-----EDLMVTDNTG 239
            A    +D  G T LH      +               ++  G K     +   +T+  G
Sbjct: 174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233

Query: 240 LTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSP 274
           LTP  LA+      V  +      +L +       
Sbjct: 234 LTPLALAASSGKIGVLAY------ILQREIHEPEC 262

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  109 bits (274), Expect = 6e-27
 Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 42/200 (21%)

Query: 49  DLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD------- 101
             + L++ V     S ++    G  AL  A           ++E+G DV AA        
Sbjct: 82  KTDSLKQFV---NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKK 138

Query: 102 -------HTGQTALHWSAVRGAIQVAELLLREG---ARVNAADMYGYQTTHVAAQYG--- 148
                  + G+  L  +A    + + + LL+     A ++A D  G    H   +     
Sbjct: 139 TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNT 198

Query: 149 --QTAFLYHIVS----------KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
              T F+  + +                ++ +  G +PL  AA  G    +  +L     
Sbjct: 199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL----- 253

Query: 197 RGRQDKEGCTPLHWAAIRGN 216
             +++       H AA   +
Sbjct: 254 --QREIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 20/118 (16%)

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQ--------DKEGCTPLHWAA 212
           +A    P    R  +  A  +     +  LL       ++         + G T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 213 I---RGNLEACTVLVQAGKKEDLMVT---------DNTGLTPAQLASDKNHRQVAFFL 258
           +    G  +   +L+   +K D +              G T   +A ++ +  +   L
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 7/81 (8%)

Query: 35  ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG 94
            ++ N  +  + Y ++  L   +          +  G   L  AA + +     YI++  
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE 256

Query: 95  GDVNAADHTGQTALHWSAVRG 115
                         H +A   
Sbjct: 257 IH-------EPECRHAAAHHH 270

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  116 bits (293), Expect = 7e-31
 Identities = 55/157 (35%), Positives = 73/157 (46%), Gaps = 34/157 (21%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
           G   L  AA N      + ++E G DVNA D  G+T LH +A  G ++V +LLL  GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           NA                                   D +GR+PLH AA  G  + ++LL
Sbjct: 62  NAK----------------------------------DKNGRTPLHLAARNGHLEVVKLL 87

Query: 191 LFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           L   A    +DK G TPLH AA  G+LE   +L++AG
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 97.4 bits (244), Expect = 2e-24
 Identities = 53/155 (34%), Positives = 71/155 (45%), Gaps = 36/155 (23%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G+T LH +A  G ++V +LLL  GA VNA D                             
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----------------------------- 32

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
                 +GR+PLH AA  G  + ++LLL   A    +DK G TPLH AA  G+LE   +L
Sbjct: 33  -----KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           ++AG   D+   D  G TP  LA+   H +V   L
Sbjct: 88  LEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 97.0 bits (243), Expect = 3e-24
 Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 35/155 (22%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + AA  G LE ++ L+E  G  V+  D  G   L  AA N      + ++E G DVNA D
Sbjct: 7   HLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN 161
             G+T LH +A  G ++V +LLL  GA VNA                             
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK---------------------------- 97

Query: 162 ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY 196
                 D +GR+PLH AA  G  + ++LLL   AY
Sbjct: 98  ------DKNGRTPLHLAARNGHLEVVKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 74.7 bits (185), Expect = 2e-16
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
           +GR+PLH AA  G  + ++LLL   A    +DK G TPLH AA  G+LE   +L++AG  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-- 58

Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            D+   D  G TP  LA+   H +V   L
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.5 bits (182), Expect = 6e-16
 Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
             G  V+ +    +  T    AA  G LE ++ L+E  G  V+  D  G   L  AA N 
Sbjct: 23  EAGADVNAKD--KNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNG 79

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGA 128
                + ++E G DVNA D  G+T LH +A  G ++V +LLL  GA
Sbjct: 80  HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  115 bits (289), Expect = 8e-30
 Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 16/165 (9%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDG---LGYYALQWAALNNRTAAAQYIIEHGGDVN 98
             AA  G  E    L E +G    E      + Y  L+      R   + ++I  G D+ 
Sbjct: 11  SAAAMLGTYEDFLELFE-KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69

Query: 99  AADHTGQTALHWSAVRG------AIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF 152
           +    G T        G        ++ ++ L +GA + A                    
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE 129

Query: 153 LYH------IVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                    I S+      + D  G + L +         ++++ 
Sbjct: 130 NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  114 bits (288), Expect = 1e-29
 Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 17/183 (9%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADH---TGQTALHWSAVRGAIQVAELLLREG 127
            Y  +  AA+         + E G +   +          L  +      +++  L+ +G
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 128 ARVNAADMYGYQTTHVAAQYGQTAFLYHI-VSKW----NADPDVPDNDGRSPLHWAAYKG 182
           A + +    G        Q G         + K      AD        +  +    +  
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 183 FADCIRLLLFLDAY---RG----RQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVT 235
           F D   ++          G     +DK G T L +        A  ++    K     + 
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK--KYNLK 183

Query: 236 DNT 238
           +N+
Sbjct: 184 ENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.8 bits (231), Expect = 6e-22
 Identities = 20/173 (11%), Positives = 43/173 (24%), Gaps = 21/173 (12%)

Query: 103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW-- 160
           +    +  +A+ G  +    L  +G      +                    + +S +  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 161 --NADPDVPDNDGRSPLHWAAYKGFAD------CIRLLLFLDAYRGRQDKEGCTPLHWAA 212
              AD      +G +        G  D        ++ L   A      K     +    
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 213 IRGNLEAC-------TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
               ++          +  Q+G    L++ D  GLT  +             +
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGL--QLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 11/103 (10%), Positives = 25/103 (24%), Gaps = 12/103 (11%)

Query: 44  AAAYGDLEKLQRLVECE-----GCSVSEPDGLGYYALQWAALNNRTAAAQ-------YII 91
               G  +       C+     G  ++         +     N      +          
Sbjct: 82  LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141

Query: 92  EHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           + G  +   D  G TAL +          +++     + N  +
Sbjct: 142 QSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 13/106 (12%), Positives = 22/106 (20%), Gaps = 5/106 (4%)

Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDA---YRGRQDKEGCTPLHWAAIRGNLEACTVLVQA 226
                +  AA  G  +    L            +       L         +    L+  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 227 GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGN 272
           G   D+      G T            +       +  L+K  D  
Sbjct: 65  G--ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  110 bits (279), Expect = 7e-29
 Identities = 37/160 (23%), Positives = 57/160 (35%), Gaps = 34/160 (21%)

Query: 68  DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREG 127
           +  G   L  A++     + +Y++++G D N  DH G T LH +   G ++V ELLL+  
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 128 ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI 187
           A VN                                         SPLH AA  G  D +
Sbjct: 67  ALVNTT----------------------------------GYQNDSPLHDAAKNGHVDIV 92

Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
           +LLL   A R   +  G  P+ +           +  +  
Sbjct: 93  KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 90.6 bits (226), Expect = 9e-22
 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A+  GD+  ++ L++  G   +  D  G+  L  A  +      + +++H   VN   + 
Sbjct: 17  ASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
             + LH +A  G + + +LLL  GA  NA +++G +         
Sbjct: 76  NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 72.1 bits (178), Expect = 3e-15
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 27  SNGVVVDEESLRNDVYT----AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
            NG   + +   +  +T    A  +G L+ ++ L++     V+         L  AA N 
Sbjct: 31  QNGSDPNVKD--HAGWTPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDAAKNG 87

Query: 83  RTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
                + ++ +G   NA +  G   + ++       +  L  +  +  +A+
Sbjct: 88  HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES-SSAS 137

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (276), Expect = 1e-28
 Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 34/145 (23%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
              WA  N      +  +  G DVN     G+  LH++A  G +++ E LL +GA +NA 
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
                                             D    +PL  A Y+G   C++LLL  
Sbjct: 70  ----------------------------------DKHHITPLLSAVYEGHVSCVKLLLSK 95

Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLE 218
            A +  +  +G T       +    
Sbjct: 96  GADKTVKGPDGLTAFEATDNQAIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.0 bits (248), Expect = 6e-25
 Identities = 30/151 (19%), Positives = 47/151 (31%), Gaps = 36/151 (23%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
                 W+   G +   +  + +G  VN                                
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTL----------------------------- 37

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
                  GR PLH+AA  G  + +  LL   A     DK   TPL  A   G++    +L
Sbjct: 38  -----EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92

Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
           +  G   D  V    GLT  +   ++  + +
Sbjct: 93  LSKGA--DKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.1 bits (225), Expect = 7e-22
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A   GDL++++  V  +G  V+     G   L +AA   +    ++++  G D+NA D  
Sbjct: 14  ALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG 148
             T L  +   G +   +LLL +GA        G           
Sbjct: 73  HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.9 bits (188), Expect = 9e-17
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
            +       WA   G  D ++  +       R  + G  PLH+AA  G LE    L+  G
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
              D+   D   +TP   A  + H      L
Sbjct: 64  --ADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AA  G LE L+ L+  +G  ++ PD      L  A      +  + ++  G D       
Sbjct: 47  AADCGQLEILEFLLL-KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 105

Query: 104 GQTALHWSAVRGAIQVAE 121
           G TA   +  +    + +
Sbjct: 106 GLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.6 bits (130), Expect = 6e-09
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFF 257
           G           WA   G+L+     V  G  ED+  T   G  P   A+D    ++  F
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEF 58

Query: 258 L 258
           L
Sbjct: 59  L 59

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  112 bits (283), Expect = 3e-28
 Identities = 45/259 (17%), Positives = 76/259 (29%), Gaps = 58/259 (22%)

Query: 38  RNDVYTAAAYGDLEKLQRLVE---CEGCSVSEPDG----LGYYALQWAALN---NRTAAA 87
           R  ++   + G  + L+ L+         +++ +      G   L  A LN    R    
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 88  QYIIEHGGD-----------VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY 136
             +++                    + GQTALH +  R      ELL+ +GA V+A    
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 137 GYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL---FL 193
            +                        D       G  PL  AA       +  L      
Sbjct: 126 RFFQPK--------------------DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165

Query: 194 DAYRGRQDKEGCTPLHWAAIRGN---------LEACTVLVQAG-----KKEDLMVTDNTG 239
            A   RQD  G T LH      +          +   +L+              + +N G
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225

Query: 240 LTPAQLASDKNHRQVAFFL 258
           L+P  +A+      +   +
Sbjct: 226 LSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 87.9 bits (218), Expect = 1e-19
 Identities = 32/178 (17%), Positives = 48/178 (26%), Gaps = 36/178 (20%)

Query: 64  VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT--------------GQTALH 109
             +    G  AL  A         + ++E G DV+A                  G+  L 
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145

Query: 110 WSAVRGAIQVAELLLREG---ARVNAADMYGYQTTHVAAQYG-----QTAFLYHIVS--- 158
            +A      +   L   G   A +   D  G    H            T F+  +     
Sbjct: 146 LAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL 205

Query: 159 -------KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH 209
                         + +NDG SPL  AA  G     + ++     R   D       H
Sbjct: 206 IKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII----RREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 18/114 (15%)

Query: 44  AAAYGDLEKLQRLVE--CEGCSVSEPDGLGYYALQWAALNN---------RTAAAQYIIE 92
           AA       +  L E   +   +   D  G   L                 T     ++ 
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 93  HGGDVNAA-------DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQ 139
               +          ++ G + L  +A  G I + + ++R      AA  + + 
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHHH 260

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  107 bits (269), Expect = 2e-27
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
            L  AA   +    + ++ +G DVNA D  G T L+ +   G +++ E+LL+ GA VNA 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
           D  G+   H+AA  G       ++    AD +  D  G++    +   G  D   +L 
Sbjct: 77  DAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  102 bits (257), Expect = 6e-26
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 86  AAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAA 145
            + +   HG D+          L  +A  G      +L+  GA VNA D YG    ++A 
Sbjct: 3   GSHHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLAT 55

Query: 146 QYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGC 205
            +G    +  ++    AD +  D  G +PLH AA+ G  +   +LL   A    QDK G 
Sbjct: 56  AHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK 114

Query: 206 TPLHWAAIRGNLE 218
           T    +   GN +
Sbjct: 115 TAFDISIGNGNED 127

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.2 bits (168), Expect = 5e-14
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 169 NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK 228
           +D    L  AA  G  D +R+L+   A    +D+ G TPL+ A   G+LE   VL++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 229 KEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
             D+   D  G TP  LA+   H ++A  L
Sbjct: 72  --DVNAVDAIGFTPLHLAAFIGHLEIAEVL 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 66.6 bits (164), Expect = 2e-13
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           Y A A+G LE ++ L++  G  V+  D +G+  L  AA       A+ +++HG DVNA D
Sbjct: 52  YLATAHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

Query: 102 HTGQTALHWSAVRGAIQVAELLL 124
             G+TA   S   G   +AE+L 
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQ 133

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  105 bits (263), Expect = 5e-25
 Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 24/252 (9%)

Query: 17  NHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGD--LEKLQRLVECEGCSVSEP-DGLGYY 73
                  S  ++    + E   ++        D  L+++         +++ P D  G  
Sbjct: 74  EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 133

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRG----AIQVAELLLREGAR 129
            L W          +++++HG +    D+ G++ L  +        +     LL      
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193

Query: 130 VNAADMYG------------YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW 177
           +   D                     AA+Y     +  IV K N       N+  S  + 
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253

Query: 178 AAYKGFADCIRLLLFLDAYRGR---QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMV 234
              +     +  L            QD  G T L+ AA  GN+     L+  G   D  +
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA--DPFI 311

Query: 235 TDNTGLTPAQLA 246
            + +GL P    
Sbjct: 312 ANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  104 bits (260), Expect = 1e-24
 Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 20/188 (10%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN----RTAAAQYIIEHGGDVNA 99
             +  +LE ++ LV+  G +    D +G   L  A  +            +      +  
Sbjct: 138 LTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

Query: 100 ADHTGQTALHWSAVRGAI------------QVAELLLREGARVNAADMYGYQTTHVAAQY 147
            D   +T LH   +   +             +   ++++  R   +     ++       
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256

Query: 148 GQTAFLYHIVS---KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEG 204
            +   +   +          +  D++G + L+ AA  G    +  LL   A     +K G
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316

Query: 205 CTPLHWAA 212
             P+ + A
Sbjct: 317 LRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 98.6 bits (245), Expect = 1e-22
 Identities = 29/256 (11%), Positives = 79/256 (30%), Gaps = 20/256 (7%)

Query: 23  QSSPSNGVVVDEESLRNDVY-TAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAAL- 80
           ++ PS  V  +E+ ++ + +     + +++++   +  +  + +   G      Q  +  
Sbjct: 47  KALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD 106

Query: 81  NNRTAAAQYIIEHGGDVNAA-DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQ 139
           +              ++N   D  G T LHW      +++ + L++ G+     D  G  
Sbjct: 107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166

Query: 140 TTHVAAQYG---QTAFLYHIVSKWNADPDVPDNDGRSPLHWAA----YKGFADCIR---- 188
               A +      +     ++        + D+  R+ LH         G +   +    
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 226

Query: 189 ----LLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMV--TDNTGLTP 242
                ++       +                  ++    +        M+   D+ G T 
Sbjct: 227 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 286

Query: 243 AQLASDKNHRQVAFFL 258
             +A+   +  +   L
Sbjct: 287 LNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.0 bits (145), Expect = 7e-10
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 3/116 (2%)

Query: 34  EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYI--- 90
             S       AA Y     +  +V+ +   +                  + +  + +   
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 91  IEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ 146
                 +NA D  G T L+ +A  G I + + LL  GA    A+  G +     A 
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 98.6 bits (247), Expect = 7e-25
 Identities = 34/139 (24%), Positives = 47/139 (33%), Gaps = 34/139 (24%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
           G   L  AA N      + ++  G DVNA    G T LH +A  G  ++ +LLL +GA V
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           NA                                     DG +P H A   G  + ++LL
Sbjct: 69  NAR----------------------------------SKDGNTPEHLAKKNGHHEIVKLL 94

Query: 191 LFLDAYRGRQDKEGCTPLH 209
               A    +        H
Sbjct: 95  DAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 84.0 bits (209), Expect = 1e-19
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + AA  G  E++++L+  +G  V+     G   L  AA N      + ++  G DVNA  
Sbjct: 14  HNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYH 155
             G T  H +   G  ++ +LL  +GA VNA                     +H
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS-----------WGSSHHHHHH 115

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.0 bits (191), Expect = 3e-17
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 165 DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV 224
                DG +PLH AA  G A+ ++ LL   A    + K+G TPLH AA  G+ E   +L+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 225 QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
             G   D+      G TP  LA    H ++   L
Sbjct: 63  AKGA--DVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  100 bits (249), Expect = 6e-23
 Identities = 43/261 (16%), Positives = 73/261 (27%), Gaps = 35/261 (13%)

Query: 27  SNGVVVDEESLRND--VYTAAAYGDLEKLQRLVECEG-CSVSEPDGLGYYALQWAALNNR 83
           ++  +V      N      AA  G L  L RL E      ++      Y+A + AA N  
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

Query: 84  TAAAQYIIEHGGDVNAADHT--GQTALHWSAVR-GAIQVAELLLREGARVNAADMYGYQT 140
                 + E       A        A  W+AV  G   V   LL     +  A+++ ++ 
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEY 235

Query: 141 THVAAQYGQTAFLYHIVSKWNA-------------DPDVPDNDGRSPLHWAAYKGFADCI 187
                       +  +    +A                     G   L     +     +
Sbjct: 236 GEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS-ECLQGFYMLRNLIRRNDEVLL 294

Query: 188 RLLLFL--------DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG------KKEDLM 233
             + FL         A       +    L  A   GN  AC +L+         K  +  
Sbjct: 295 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYY 354

Query: 234 VTDNTGLTP-AQLASDKNHRQ 253
           + +  G      +A + +H  
Sbjct: 355 INETGGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 82.7 bits (204), Expect = 4e-17
 Identities = 25/278 (8%), Positives = 56/278 (20%), Gaps = 58/278 (20%)

Query: 38  RNDVYTAAAYGDLEKLQRLVECEGCSVS-EPDGLGYYALQWAALNNRTAAAQYIIEHGGD 96
           +        Y    +  + +  +      + + + + A      +        ++     
Sbjct: 62  QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSS-ALDTLCLLLTSDEI 120

Query: 97  VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT--HVAAQYGQTAFLY 154
           V         A   +A  G + V   L         A +         +AA+ G    L 
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 155 HIVSKW-NADPDVPDNDGRSPLHWAAY-KGFADCIRLLLFLDAYRGRQDKEGC------- 205
            +          +   +      WAA  +G  + I  LL         +           
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 240

Query: 206 ---------------TPLHWAAIRGNLE------------ACTVLVQAGKKE-------- 230
                               +   G  +                L++   +         
Sbjct: 241 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 300

Query: 231 ----------DLMVTDNTGLTPAQLASDKNHRQVAFFL 258
                                  +LA    ++     L
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.1 bits (122), Expect = 6e-07
 Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 9/115 (7%)

Query: 162 ADPDVPDNDGRSPLHWAAYKG---FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLE 218
           +D              AA  G     D + LLL  D        E       AA  G+L 
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142

Query: 219 ACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNS 273
               L +    E + +         +LA++  H  V        RL +      +
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV------LNRLCELAPTEAT 191

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 37/146 (25%)

Query: 78  AALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYG 137
            + ++    +  ++  G  + +        L  +A  G      +L+  GA V A D   
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKD--- 54

Query: 138 YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
                                           +G +PLH AA  G  + ++LLL   A  
Sbjct: 55  -------------------------------KNGSTPLHLAARNGHLEVVKLLLEAGADV 83

Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVL 223
             QDK G T    +   GN +   +L
Sbjct: 84  XAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 82.6 bits (205), Expect = 3e-19
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
            +++        LV   G  +          L  AA   +    + ++ +G DV A D  
Sbjct: 1   GSSHHHHHHSSGLVP-RGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT 150
           G T LH +A  G ++V +LLL  GA V A D +G     ++   G  
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNE 103

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 76.5 bits (189), Expect = 4e-17
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE 203
            + +        +V +  +      +D    L  AA  G  D +R+L+   A    +DK 
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 204 GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           G TPLH AA  G+LE   +L++AG   D+   D  G T   ++ D  +  +A  L
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGA--DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.5 bits (145), Expect = 4e-11
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
             AA  G  ++++ L+   G  V+  D  G   L  AA N      + ++E G DV A D
Sbjct: 29  LEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87

Query: 102 HTGQTALHWSAVRGAIQVAELL 123
             G+TA   S   G   +AE+L
Sbjct: 88  KFGKTAFDISIDNGNEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 89.0 bits (222), Expect = 9e-22
 Identities = 41/126 (32%), Positives = 54/126 (42%), Gaps = 34/126 (26%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
           G   L  AA N      + ++E G DVNA D  G+T LH +A  G ++V +LLL  GA V
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
           NA                                   D +GR+PLH AA  G  + ++LL
Sbjct: 62  NAK----------------------------------DKNGRTPLHLAARNGHLEVVKLL 87

Query: 191 LFLDAY 196
           L   AY
Sbjct: 88  LEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.9 bits (209), Expect = 5e-20
 Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 34/124 (27%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G+T LH +A  G ++V +LLL  GA VNA D                             
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----------------------------- 32

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
                 +GR+PLH AA  G  + ++LLL   A    +DK G TPLH AA  G+LE   +L
Sbjct: 33  -----KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 224 VQAG 227
           ++AG
Sbjct: 88  LEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.1 bits (186), Expect = 8e-17
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK 229
           +GR+PLH AA  G  + ++LLL   A    +DK G TPLH AA  G+LE   +L++AG  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59

Query: 230 EDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            D+   D  G TP  LA+   H +V   L
Sbjct: 60  -DVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.5 bits (182), Expect = 3e-16
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + AA  G LE ++ L+E  G  V+  D  G   L  AA N      + ++E G DVNA D
Sbjct: 7   HLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGA 128
             G+T LH +A  G ++V +LLL  GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 33/204 (16%), Positives = 62/204 (30%), Gaps = 22/204 (10%)

Query: 2   SSEIEVVEEVGQSSQNH---HNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVE 58
           +SE+ + + +G +  N           P       +   R D Y  A Y      +R   
Sbjct: 67  TSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKD-YITAKY----MERRYAR 121

Query: 59  CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT------GQTALH--- 109
            +    +       ++L  A               G D+             +TALH   
Sbjct: 122 KKHADTAAKL----HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAV 177

Query: 110 WSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDN 169
            S  R ++ + + L++    ++     G    H          L  ++ +  A  ++ + 
Sbjct: 178 RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KLLLRGKASIEIANE 236

Query: 170 DGRSPLHWAAYKGFADCIRLLLFL 193
            G +PL  A       C  LL   
Sbjct: 237 SGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRG---RQDKEGCTPLHWAAIRGNLEACTVLV 224
                + LH A        + ++ FL    G   +Q  +G T LH+  +  N E   +L+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 225 QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR 262
           +      + + + +G TP  +A    H      L  A 
Sbjct: 226 RGKA--SIEIANESGETPLDIAKRLKHEHCEELLTQAL 261

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 142 HVAAQYGQTAFLYHIVSK--WN-ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRG 198
           H+A +      L HIV     N  + D     G + LH+      A+C++LLL   A   
Sbjct: 174 HLAVRSVDRTSL-HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

Query: 199 RQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE 230
             ++ G TPL  A    +     +L QA    
Sbjct: 233 IANESGETPLDIAKRLKHEHCEELLTQALSGR 264

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRG---RQDKEGCTPLHWAAIRGN 216
                          LH A        + L+ F+    G    +  +G T LH+AA+   
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238

Query: 217 LEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
            +   +L++      +   +  G T   +A  K+H++    L  A+ 
Sbjct: 239 PDCLKLLLKGRA--LVGTVNEAGETALDIARKKHHKECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 11/142 (7%)

Query: 99  AADHTGQTALHWSAVR-GAIQVAELLLREGARVNAADMYGYQTT------HVAAQYGQTA 151
           A   T +    W+A+    +         G                    H+A +    A
Sbjct: 145 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 204

Query: 152 FLYHIVS--KWN-ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPL 208
            L  +V     N    D    DG + LH+AA     DC++LLL   A  G  ++ G T L
Sbjct: 205 SL-PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 263

Query: 209 HWAAIRGNLEACTVLVQAGKKE 230
             A  + + E   +L QA    
Sbjct: 264 DIARKKHHKECEELLEQAQAGT 285

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 59.2 bits (143), Expect = 9e-10
 Identities = 32/168 (19%), Positives = 50/168 (29%), Gaps = 42/168 (25%)

Query: 31  VVDEESLRNDVYTAAAYGDLEKLQRLV---ECEGCSVSEPDGL--GYYALQWAALNNRTA 85
                     ++TA    DL  +       +  G  +  PD        L  A      A
Sbjct: 145 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 204

Query: 86  ---AAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTH 142
                 +II++GG ++A    G TALH++A+       +LLL+                 
Sbjct: 205 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR--------------- 249

Query: 143 VAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
                              A     +  G + L  A  K   +C  LL
Sbjct: 250 -------------------ALVGTVNEAGETALDIARKKHHKECEELL 278

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 63.3 bits (153), Expect = 7e-11
 Identities = 33/182 (18%), Positives = 56/182 (30%), Gaps = 36/182 (19%)

Query: 13  QSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGL-- 70
                  +           +        ++ A+ +             G  V+  +G   
Sbjct: 175 SIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQD 234

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV 130
               L  A   N   A ++++++G +VN AD  G+  LH + + G   +A L L+ G   
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG--- 291

Query: 131 NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
                                          AD    D++GR PL  A     AD + LL
Sbjct: 292 -------------------------------ADLGARDSEGRDPLTIAMETANADIVTLL 320

Query: 191 LF 192
             
Sbjct: 321 RL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 63.3 bits (153), Expect = 7e-11
 Identities = 38/171 (22%), Positives = 51/171 (29%), Gaps = 36/171 (21%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAA--DHTGQTALHWSAVRGAIQVAELLLREGA 128
           G    + +            + HG DVN         T L  +    ++   E LL    
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL---- 255

Query: 129 RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIR 188
                            Q G             A+ +  D+ GR PLH A   G      
Sbjct: 256 -----------------QNG-------------ANVNQADSAGRGPLHHATILGHTGLAC 285

Query: 189 LLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTG 239
           L L   A  G +D EG  PL  A    N +  T+L  A  +E        G
Sbjct: 286 LFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDAYRG---RQDKEGCTPLHWAAIRGNLEACTVLV 224
                  LH A        + L+ F+    G    +  +G T LH+AA+    +   +L+
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227

Query: 225 QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR 263
           +          +  G T   +A  K+H++    L  A+ 
Sbjct: 228 KGRALVG--TVNEAGETALDIARKKHHKECEELLEQAQA 264

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 95/664 (14%), Positives = 188/664 (28%), Gaps = 213/664 (32%)

Query: 10  EVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLV----ECEGCSVS 65
           E G+    +   D       + V E++  ++        D++ + + +    E +   +S
Sbjct: 10  ETGE--HQYQYKDI------LSVFEDAFVDNF----DCKDVQDMPKSILSKEEIDHIIMS 57

Query: 66  EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN-----------AADHTGQTALHWSAV- 113
           +    G   L W  L+ +    Q  +E    +N               +  T ++     
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 114 ---------------RG----AIQVAELLLREGARVNAADMYGYQTTHVAAQ-------- 146
                          R      ++ A L LR    V    + G   T VA          
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 147 -----------YGQT-----------AFLYHIVSKWNADPDVPDNDGRSPLHWA------ 178
                                       LY I   W +  D   N  +  +H        
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRR 236

Query: 179 --AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV------------ 224
               K + +C   LL L      Q+ +      W A   NL  C +L+            
Sbjct: 237 LLKSKPYENC---LLVLL---NVQNAK-----AWNAF--NLS-CKILLTTRFKQVTDFLS 282

Query: 225 QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLA 284
            A      +   +  LTP ++ S      +  +L    + L +     +P  ++S +  +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKS-----LLLKYLDCRPQDLPREVLTTNPR-RLSIIAES 336

Query: 285 ----PALWCVILLMLVTYMHSVIMASNLPKLTAG-----FGLLAWSGVFLATGGLVLFYR 335
                A W     +    + ++I +S L  L        F  L+   VF           
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLS---VF----------- 381

Query: 336 CSRKDPGYIRMNVHDP--------QNMKDDEPLLKI-EMNNPALLAGNWS---------Q 377
                        H P         ++   + ++ + +++  +L+               
Sbjct: 382 --PPS-------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 378 LCATCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKNKWD--FFLFLVLEVSAMLV 435
           L    K+     A H       V+ ++    + S+ +      D  F+  +   +  +  
Sbjct: 433 LELKVKL-ENEYALH----RSIVDHYNIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEH 486

Query: 436 TGAVTVIR-VFTDPVAPSSFGAWM------SYASTHHIGALSFLIADFSLFFGVAVLTAV 488
              +T+ R VF D      F  ++         + +  G++   +     +         
Sbjct: 487 PERMTLFRMVFLD------FR-FLEQKIRHDSTAWNASGSILNTLQQLKFY--------- 530

Query: 489 QASQISRNITTNE-MANALRYNYLRGAGGR-FRNPYDHGCKRNCSDFL-INGFNEDVECV 545
               I  N    E + NA+  ++L         + Y        +D L I    ED    
Sbjct: 531 -KPYICDNDPKYERLVNAIL-DFLPKIEENLICSKY--------TDLLRIALMAEDEAIF 580

Query: 546 EDSA 549
           E++ 
Sbjct: 581 EEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 59/523 (11%), Positives = 131/523 (25%), Gaps = 165/523 (31%)

Query: 146 QYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL----FLDAYRGRQD 201
           QY     L      +  + D  D                D  + +L           +  
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKD--------------VQDMPKSILSKEEIDHIIMSKDA 60

Query: 202 KEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA 261
             G   L W  +    E     V     E+++   N     + + +++    +   +   
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFV-----EEVL-RINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 262 RRLLDKRCDGNSPIGK--------ISKL-----GLAPALWCVILLMLVTYMH-------S 301
           +R  D+  + N    K          KL      L PA   +I                +
Sbjct: 115 QR--DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--------DGVLGSGKT 164

Query: 302 VIMASNL--PKLTAGFGLLAWSGVFLATGGLV------------LFYR-----CSRKDPG 342
            +        K+           +F                   L Y+      SR D  
Sbjct: 165 WVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 343 Y-IRMNVHDPQNMKDDEPLLKIEMNNPALLAGNWSQLCATCKIVRPLRAKHCSTCDRCVE 401
             I++ +H  Q       LLK +     LL            ++  ++        +   
Sbjct: 221 SNIKLRIHSIQAELRR--LLKSKPYENCLL------------VLLNVQNA------KAWN 260

Query: 402 QFDHHCPWVSNCIGKKNKWDFFLFLVL----EVSAMLVTGAVTVIRV------FTDPVAP 451
            F+  C                  L+     +V+  L     T I +       T     
Sbjct: 261 AFNLSCK----------------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 452 SSFGAWMSYASTHHIGALSFLIADFSLFFGVAVLTAVQASQISR-----NITTNEMANAL 506
           S    ++          L   +   +    ++++       ++      ++  +++   +
Sbjct: 305 SLLLKYLD----CRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 507 R--YNYLRGAGGRFRNPYDHGCKRNCSDFLINGFNEDVE------CV--EDSAGTEGIGM 556
               N L         P ++  ++      +  F            +   D   ++ + +
Sbjct: 360 ESSLNVL--------EPAEY--RKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 557 MHMSRNSNLQNGDG-----HIHHANGNGHVAINVNSNNTNSHH 594
           ++     +L           I       ++ + V   N  + H
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPS----IYLELKVKLENEYALH 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	634
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.5e-39  Score=325.38  Aligned_cols=228  Identities=28%  Similarity=0.349  Sum_probs=185.7

Q ss_pred             CcccccchhhHHHHHHHcC-------------CHHHHHHHHhccCCCCcC-CCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q 006702           30 VVVDEESLRNDVYTAAAYG-------------DLEKLQRLVECEGCSVSE-PDGLGYYALQWAALNNRTAAAQYIIEHGG   95 (634)
Q Consensus        30 ~~~~~~~~~~~L~~Aa~~g-------------~~~~v~~Ll~~~~~~~~~-~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga   95 (634)
                      ++..++.+.||||.|+..|             +.++++.|++ .|.+++. .|..|.||||+|+..|+.+++++|+++|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY-QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH-ccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            3456788999999999987             8999999998 6777654 58999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCC-CCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChH
Q 006702           96 DVNAADHTGQTALHWSAVRGAIQVAELLLREGA-RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP  174 (634)
Q Consensus        96 d~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~ga-d~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  174 (634)
                      +++.+|..|.||||+|+..|+.+++++|+++|+ +++.++..|.||||+|+..|+.+++++|++. |++++.+|..|.||
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~  160 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSA  160 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence            999999999999999999999999999999998 8999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHH
Q 006702          175 LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV  254 (634)
Q Consensus       175 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i  254 (634)
                      ||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|+||+++|+++|+.++
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF--ANRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCccccccCCCCHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999  6788999999999999999999999


Q ss_pred             HHHHHHH
Q 006702          255 AFFLGNA  261 (634)
Q Consensus       255 ~~~L~~~  261 (634)
                      +++|...
T Consensus       239 ~~~l~~~  245 (253)
T 1yyh_A          239 VRLLDLE  245 (253)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            9998643

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9e-39  Score=315.89  Aligned_cols=226  Identities=27%  Similarity=0.362  Sum_probs=216.3

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      ....++|+.|++.|+++.++.|++..+..++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence            35678999999999999999999976667888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC
Q 006702          115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD  194 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  194 (634)
                      |+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  162 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK  162 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999988 9999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH
Q 006702          195 AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR  263 (634)
Q Consensus       195 a~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~  263 (634)
                      ++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||+++|+..++.+++++|.+.+.
T Consensus       163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG--ASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            999999999999999999999999999999999  6788999999999999999999999999876543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.4e-39  Score=317.82  Aligned_cols=226  Identities=25%  Similarity=0.275  Sum_probs=213.1

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHh---ccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVE---CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTAL  108 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpL  108 (634)
                      ..++.+.|+||.|++.|+.+++++|++   ..+.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            457789999999999999999999997   47899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCC----CCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCC-CCCChHHHHHHhcCC
Q 006702          109 HWSAVRGAIQVAELLLREGA----RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-NDGRSPLHWAAYKGF  183 (634)
Q Consensus       109 h~A~~~g~~~iv~~Ll~~ga----d~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~  183 (634)
                      |+|+..|+.+++++|+++++    +++.+|..|.||||+|+..|+.+++++|++. |++++..+ ..|.||||+|+..|+
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCC
Confidence            99999999999999999998    8899999999999999999999999999988 99999999 889999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHH
Q 006702          184 ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN  260 (634)
Q Consensus       184 ~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~  260 (634)
                      .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||+++|+..++.++++.|.+
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG--ADSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC--CCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999  6788999999999999999999999988754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.6e-38  Score=310.92  Aligned_cols=225  Identities=28%  Similarity=0.396  Sum_probs=215.2

Q ss_pred             CcccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 006702           30 VVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALH  109 (634)
Q Consensus        30 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh  109 (634)
                      ....++.+.++||.|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHH-cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            34567889999999999999999999999 79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcC-CCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHH
Q 006702          110 WSAVRGAIQVAELLLREG-ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIR  188 (634)
Q Consensus       110 ~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~  188 (634)
                      +|+..|+.+++++|+++| ++++..+..|.||||.|+..++.+++++|++. |++++.+|..|.||||+|+..|+.++++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999999 89999999999999999999999999999987 9999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHH
Q 006702          189 LLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL  258 (634)
Q Consensus       189 ~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L  258 (634)
                      +|++.|++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||+++|+..++.+.+..|
T Consensus       162 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--ad~~~~d~~g~t~l~~A~~~~~~~~~~~l  229 (237)
T 3b7b_A          162 ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD--SDVTLKNKEGETPLQCASLNSQVWSALQM  229 (237)
T ss_dssp             HHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC--CCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999  67889999999999999999998655554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-37  Score=316.68  Aligned_cols=221  Identities=26%  Similarity=0.372  Sum_probs=190.0

Q ss_pred             chhhHHHHHHHcCCHHHHHHHHhccCCCCcCC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           36 SLRNDVYTAAAYGDLEKLQRLVECEGCSVSEP-DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        36 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~-d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      .+.++|+.|++.|+.+++++|++ .+.+++.. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            56788888888888888888888 67788776 77788888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCC----------CCCCChHHHHHHhcCCH
Q 006702          115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP----------DNDGRSPLHWAAYKGFA  184 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~t~Lh~A~~~g~~  184 (634)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +++++..          +..|.||||+|+..|+.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence            888888888888888888888888888888888888888888887 8888776          67788888888888888


Q ss_pred             HHHHHHhhc-CCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHH
Q 006702          185 DCIRLLLFL-DAYRGRQDKEGCTPLHWAAIRGN----LEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG  259 (634)
Q Consensus       185 ~~v~~Ll~~-ga~~~~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~  259 (634)
                      +++++|++. |++++.+|..|.||||+|+..++    .+++++|+++|  ++++.+|..|.||||+|+..++.+++++|.
T Consensus       162 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  239 (285)
T 1wdy_A          162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG--ADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT--CCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            888888876 88888888888888888888888    88888888888  567788888888888888888888888875


Q ss_pred             H
Q 006702          260 N  260 (634)
Q Consensus       260 ~  260 (634)
                      +
T Consensus       240 ~  240 (285)
T 1wdy_A          240 E  240 (285)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.4e-37  Score=312.42  Aligned_cols=226  Identities=25%  Similarity=0.254  Sum_probs=216.9

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV  113 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~  113 (634)
                      +..+.++||.|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  114 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV  114 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHH
Confidence            5668899999999999999999998 799999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCcc----------ccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC
Q 006702          114 RGAIQVAELLLREGARVNAA----------DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF  183 (634)
Q Consensus       114 ~g~~~iv~~Ll~~gad~~~~----------d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  183 (634)
                      .|+.+++++|+++|++++.+          +..|.||||.|+..|+.+++++|++..+++++.+|..|.||||+|+..++
T Consensus       115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  194 (285)
T 1wdy_A          115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD  194 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC
T ss_pred             hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc
Confidence            99999999999999999887          78899999999999999999999998899999999999999999999999


Q ss_pred             ----HHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccccCCCCCCHHHHHHhcCcHHHHHHH
Q 006702          184 ----ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ-AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL  258 (634)
Q Consensus       184 ----~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L  258 (634)
                          .+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|  ++++.+|..|.||||+|++.++.+++++|
T Consensus       195 ~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g--~~~~~~~~~g~t~l~~A~~~~~~~i~~~L  272 (285)
T 1wdy_A          195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             TTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS--CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC--CCccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence                899999999999999999999999999999999999999999 67  68889999999999999999999999998


Q ss_pred             HHHH
Q 006702          259 GNAR  262 (634)
Q Consensus       259 ~~~~  262 (634)
                      .+.+
T Consensus       273 l~~G  276 (285)
T 1wdy_A          273 CKRG  276 (285)
T ss_dssp             HHHS
T ss_pred             HHcC
Confidence            6643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.8e-37  Score=325.18  Aligned_cols=227  Identities=26%  Similarity=0.280  Sum_probs=204.6

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCC-------------
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDG-LGYYALQWAALNNRTAAAQYIIEHGGDVN-------------   98 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n-------------   98 (634)
                      ....+.++|+.||+.|++++|+.||+ .|+++|.++. .|.||||+||..|+.++|++|+++|++++             
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~-~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            44567899999999999999999999 7999998875 59999999999999999999999987654             


Q ss_pred             --------------------CCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCcc----------ccCCChHHHHHHHhC
Q 006702           99 --------------------AADHTGQTALHWSAVRGAIQVAELLLREGARVNAA----------DMYGYQTTHVAAQYG  148 (634)
Q Consensus        99 --------------------~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~----------d~~g~t~L~~Aa~~g  148 (634)
                                          .+|..|.||||+|+..|+.+++++|+++|++++.+          +..|.||||+|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                                45677899999999999999999999999998754          456899999999999


Q ss_pred             CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC----HHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 006702          149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF----ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV  224 (634)
Q Consensus       149 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  224 (634)
                      +.+++++|+++.|++++.+|..|.|+|+.++..+.    ..++++|++.|++++.+|..|+||||+|+..|+.++++.|+
T Consensus       180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            99999999988799999999999999998876554    36889999999999999999999999999999999999999


Q ss_pred             HcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          225 QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       225 ~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      +.+ .++++.+|.+|.||||+|++.|+.+++++|.+.
T Consensus       260 ~~~-~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          260 EQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             TST-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             Hhc-CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            863 268899999999999999999999999997543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=317.13  Aligned_cols=224  Identities=22%  Similarity=0.259  Sum_probs=211.1

Q ss_pred             CcccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 006702           30 VVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALH  109 (634)
Q Consensus        30 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh  109 (634)
                      ...++..+.|+||.||..|+.++++.|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLF  130 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            34578889999999999999999999999 78999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHH
Q 006702          110 WSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL  189 (634)
Q Consensus       110 ~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  189 (634)
                      +|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|++. +++++.+|..|.||||+|+..|+.+++++
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            9999999999999999999998654 499999999999999999999987 99999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       190 Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      |++.|++++. |..|.||||+|+..|+.+++++|+++|  ++++.+|..|+||+++|+.  +.+++++|.+.
T Consensus       209 Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--ad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~  275 (285)
T 3d9h_A          209 LLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFG--ADTQAKNAEGKRPVELVPP--ESPLAQLFLER  275 (285)
T ss_dssp             HHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred             HHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence            9999999995 889999999999999999999999999  6788999999999999994  46788887654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3e-37  Score=323.58  Aligned_cols=246  Identities=30%  Similarity=0.358  Sum_probs=223.0

Q ss_pred             cccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 006702           31 VVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW  110 (634)
Q Consensus        31 ~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~  110 (634)
                      ...++.+.++|+.||+.|+.+.++.|++..+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        18 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   97 (351)
T 3utm_A           18 VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             eeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            34567789999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCC----------------------
Q 006702          111 SAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD----------------------  168 (634)
Q Consensus       111 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d----------------------  168 (634)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++..+                      
T Consensus        98 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence            9999999999999999999999999999999999999999999999988 88877654                      


Q ss_pred             --------------------------------CCCChHHHHHHhc---CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHH
Q 006702          169 --------------------------------NDGRSPLHWAAYK---GFADCIRLLLFLDAYRGRQDKEGCTPLHWAAI  213 (634)
Q Consensus       169 --------------------------------~~g~t~Lh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~  213 (634)
                                                      ..|.||||+|+..   +..+++++|++.|++++.+|..|.||||+|+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  256 (351)
T 3utm_A          177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE  256 (351)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Confidence                                            5567999999998   55799999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHHHhcccCCCCCCcccccccCcchhHHH
Q 006702          214 RGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWC  289 (634)
Q Consensus       214 ~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~l~~~~~~~~~~~~~~~~~g~~~l~~~  289 (634)
                      .|+.+++++|+++|  ++++.+|..|.||||+|+..++.+++++|.+.+      .+.    ......|.+|+.++
T Consensus       257 ~g~~~~v~~Ll~~g--a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g------ad~----~~~~~~g~tal~~a  320 (351)
T 3utm_A          257 RAHNDVMEVLHKHG--AKMNALDSLGQTALHRAALAGHLQTCRLLLSYG------SDP----SIISLQGFTAAQMG  320 (351)
T ss_dssp             TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT------CCT----TCCCTTSCCHHHHS
T ss_pred             cCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC------CCC----CCcCCCCCChhhhh
Confidence            99999999999999  678899999999999999999999999986543      222    22345566766654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-38  Score=321.54  Aligned_cols=220  Identities=25%  Similarity=0.296  Sum_probs=179.0

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCC--------CcCCCCCCchHHHHHHHcCCH-HHHHHHHhcCCCCCCCCCC
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCS--------VSEPDGLGYYALQWAALNNRT-AAAQYIIEHGGDVNAADHT  103 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~--------~~~~d~~g~t~Lh~Aa~~g~~-~~v~~Ll~~gad~n~~~~~  103 (634)
                      ++.+..++|+.||+.|+.++|+.||+ .+.+        ++..+..|.||||+|+..+.. +++++|++.|+++|.+|.+
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~-~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLE-WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHT-CC----------------------------------------CCCCTTCCCTT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHH-CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            45567899999999999999999998 4432        456778899999999988875 4889999999999999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC
Q 006702          104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF  183 (634)
Q Consensus       104 g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  183 (634)
                      |.||||+|+..|+.++|++|++.|++++.++..|.||++.|+..++.++++.|++. |++++.+|..|.||||+|+..|+
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999988 99999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHH
Q 006702          184 ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL  258 (634)
Q Consensus       184 ~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L  258 (634)
                      .+++++|++.|++++.+|..|.||||+|+..|+.++|++|+++|  +|++.+|..|+||||+|+++++  ++++|
T Consensus       165 ~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G--ad~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG--ASVQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             GGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             HHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            99999999999999999999999999999999999999999999  6788999999999999988775  45544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.4e-38  Score=330.88  Aligned_cols=227  Identities=20%  Similarity=0.257  Sum_probs=213.9

Q ss_pred             CcccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 006702           30 VVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALH  109 (634)
Q Consensus        30 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh  109 (634)
                      ....++.+.++||.||..|+.++|++|++ .|++++..|..|.||||+|+..|+.++|++|+++|++++.  ..|.||||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~   89 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH   89 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence            34567889999999999999999999998 7899999999999999999999999999999999997655  47999999


Q ss_pred             HHHHhCCHHHHHHHHhc----CCCCCc-----------------cccCCChHHHHHHHhC--CHHHHHHHHHccCCCCCC
Q 006702          110 WSAVRGAIQVAELLLRE----GARVNA-----------------ADMYGYQTTHVAAQYG--QTAFLYHIVSKWNADPDV  166 (634)
Q Consensus       110 ~A~~~g~~~iv~~Ll~~----gad~~~-----------------~d~~g~t~L~~Aa~~g--~~~~v~~Ll~~~~~~~~~  166 (634)
                      +|+..|+.+++++|+++    |++++.                 +|..|.||||+|+..|  +.+++++|++. |++++.
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~  168 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTA  168 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcc
Confidence            99999999999999999    888877                 8999999999999999  99999999998 999999


Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHhhcCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCC
Q 006702          167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAY-----RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT  241 (634)
Q Consensus       167 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~T  241 (634)
                      +|..|.||||+|+..|+.+++++|++.|++     ++.+|..|.||||+|+..|+.++|++|+++|  ++++.+|..|.|
T Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--ad~~~~d~~g~t  246 (364)
T 3ljn_A          169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG--IDVNMEDNEHTV  246 (364)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT--CCTTCCCTTSCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCC
Confidence            999999999999999999999999999998     9999999999999999999999999999999  678899999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHHH
Q 006702          242 PAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       242 pl~~A~~~~~~~i~~~L~~~~  262 (634)
                      ||++|+..++.+++++|.+.+
T Consensus       247 pL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          247 PLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHS
T ss_pred             HHHHHHHhChHHHHHHHHHcC
Confidence            999999999999999997754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-37  Score=334.12  Aligned_cols=228  Identities=29%  Similarity=0.323  Sum_probs=213.0

Q ss_pred             CcccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 006702           30 VVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALH  109 (634)
Q Consensus        30 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh  109 (634)
                      ....++.+.||||.||..|+.++|++|++ .|++++..+..|.||||+|+..|+.+++++|+++|+++|.++..|.||||
T Consensus         7 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A            7 GGGGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             --------CCHHHHHHHHTCHHHHHHHHH-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            34567889999999999999999999999 79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHH
Q 006702          110 WSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL  189 (634)
Q Consensus       110 ~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  189 (634)
                      +|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++. +.+.+..+..|.||||+|+..|+.+++++
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~  164 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAEL  164 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999988 89999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          190 LLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       190 Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      |++.|++++..|..|.||||+|+..|+.+++++|+++|  .+++..+..|.|||++|+..++.+++++|.+.
T Consensus       165 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  234 (437)
T 1n11_A          165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY  234 (437)
T ss_dssp             HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999  56778899999999999999999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-37  Score=316.23  Aligned_cols=216  Identities=24%  Similarity=0.239  Sum_probs=186.0

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCC---CcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCS---VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTAL  108 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~---~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpL  108 (634)
                      ..++.+.||||.|++.|+.+++++|++ .+.+   ++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            457789999999999999999999998 5666   888999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCCC-----------------------------------------------CCccccCCChHH
Q 006702          109 HWSAVRGAIQVAELLLREGAR-----------------------------------------------VNAADMYGYQTT  141 (634)
Q Consensus       109 h~A~~~g~~~iv~~Ll~~gad-----------------------------------------------~~~~d~~g~t~L  141 (634)
                      |+|+..|+.+++++|+++|++                                               ++.+|..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            999999999999999998865                                               667788899999


Q ss_pred             HHHHHhCCHHHHHHHHHccCCCCCCCCCC-CChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 006702          142 HVAAQYGQTAFLYHIVSKWNADPDVPDND-GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC  220 (634)
Q Consensus       142 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv  220 (634)
                      |+|+..|+.+++++|++. |++++.++.. |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v  241 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence            999999999999999987 8999988854 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCccccCCCCCCHHHHHHhcCc
Q 006702          221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNH  251 (634)
Q Consensus       221 ~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~  251 (634)
                      ++|+++|  ++++.+|..|.||+++|.....
T Consensus       242 ~~Ll~~g--a~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          242 RLLRAHG--APEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHTT--CCCCCCC---------------
T ss_pred             HHHHHcC--CCcCcCCCcccccccccCCccc
Confidence            9999999  5778899999999999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-36  Score=330.49  Aligned_cols=224  Identities=25%  Similarity=0.374  Sum_probs=173.5

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV  113 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~  113 (634)
                      +..+.++|+.|+..|+.++++.|++ .+++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus       143 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  221 (437)
T 1n11_A          143 TKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK  221 (437)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence            4456677777777777777777777 677777777777777777777777777777777777777777777777777777


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhc
Q 006702          114 RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL  193 (634)
Q Consensus       114 ~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  193 (634)
                      .|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ +++++..|..|.||||+|+..|+.+++++|++.
T Consensus       222 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  300 (437)
T 1n11_A          222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH  300 (437)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            7777777777777777777777777888888888888887777776 777777777788888888888888888888888


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       194 ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      |++++.+|..|.||||+|+..|+.++|++|+++|  ++++.+|..|.||||+|+..++.+++++|.+.
T Consensus       301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  366 (437)
T 1n11_A          301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ--ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN  366 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC
Confidence            8888777778888888888888888888888877  56677777788888888888888887776553

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=6.8e-38  Score=322.10  Aligned_cols=223  Identities=27%  Similarity=0.378  Sum_probs=205.7

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSA  112 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~  112 (634)
                      .+..+.++|+.|+..|+.+.++.|++ .|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            35568899999999999999999998 78999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCC--------------------------CC
Q 006702          113 VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADP--------------------------DV  166 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~--------------------------~~  166 (634)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++++...+.++                          ..
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            9999999999999999999999999999999999999999988887655543                          33


Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHH
Q 006702          167 PDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA  246 (634)
Q Consensus       167 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A  246 (634)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||+++|
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g--ad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL--CDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCTTTSC
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHH
Confidence            6778999999999999999999999999999999999999999999999999999999999  67889999999999999


Q ss_pred             HhcCcHHHHHHH
Q 006702          247 SDKNHRQVAFFL  258 (634)
Q Consensus       247 ~~~~~~~i~~~L  258 (634)
                      ++.....+.+++
T Consensus       273 ~~~~~~~l~~l~  284 (299)
T 1s70_B          273 DEDILGYLEELQ  284 (299)
T ss_dssp             CSGGGHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            876544444443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=311.55  Aligned_cols=242  Identities=17%  Similarity=0.207  Sum_probs=195.6

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhcc----------CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECE----------GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT  103 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~----------~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~  103 (634)
                      ...+.++||.|+..|+.+.+..++...          ...++..|..|.||||+|+..|+.+++++|++.|++++.+|..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            346889999999999988888876532          1235678899999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC
Q 006702          104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF  183 (634)
Q Consensus       104 g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  183 (634)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +++++..+ .|.||||+|+..|+
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~-~g~t~L~~A~~~g~  169 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPES-DLASPIHEAARRGH  169 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCSC-TTSCHHHHHHHHTC
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCCC-CCCCHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999987 88887644 59999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH
Q 006702          184 ADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR  263 (634)
Q Consensus       184 ~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~  263 (634)
                      .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+  +++ .|..|.||||+|+..++.+++++|.+.+.
T Consensus       170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  246 (285)
T 3d9h_A          170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA--DVN-QGKGQDSPLHAVVRTASEELACLLMDFGA  246 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC--CTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC--CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999995  555 48899999999999999999999876543


Q ss_pred             -HhcccCCCCCCcccccc
Q 006702          264 -LLDKRCDGNSPIGKISK  280 (634)
Q Consensus       264 -l~~~~~~~~~~~~~~~~  280 (634)
                       +..++..+.+|++.+..
T Consensus       247 d~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          247 DTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             CTTCCCTTSCCGGGGSCT
T ss_pred             CCCCcCCCCCCHHHHhcC
Confidence             34456677777777663

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.7e-37  Score=300.81  Aligned_cols=216  Identities=23%  Similarity=0.308  Sum_probs=200.1

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcC--CCCCC-CCCCCCcHHHHHHH
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG--GDVNA-ADHTGQTALHWSAV  113 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g--ad~n~-~~~~g~tpLh~A~~  113 (634)
                      +++|||.|++.|+.+.++.|++......+..|..|.||||+|+..|+.+++++|+++|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            4789999999999999999999544445568999999999999999999999999999  56666 78899999999999


Q ss_pred             hCCHHHHHHHHhcC--CCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHh
Q 006702          114 RGAIQVAELLLREG--ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL  191 (634)
Q Consensus       114 ~g~~~iv~~Ll~~g--ad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  191 (634)
                      .|+.+++++|+++|  ++++.++..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999  89999999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             hcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHH
Q 006702          192 FLD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLV-QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL  258 (634)
Q Consensus       192 ~~g-a~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll-~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L  258 (634)
                      +.| ++++.+|..|+||||+|+..|+.+++++|+ ++|  ++++.+|..|+||+++|++.+   ++++|
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g--a~~~~~~~~g~t~l~~A~~~~---~~~~l  224 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG--AEYDLVDNKGAKAEDVALNEQ---VKKFF  224 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--CCSCCBCTTSCBGGGGCSSTT---HHHHH
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC--CCCCccCCCCCcHHHHHHHHH---HHHHH
Confidence            999 999999999999999999999999999999 888  678899999999999998764   45554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=298.11  Aligned_cols=227  Identities=32%  Similarity=0.525  Sum_probs=214.2

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCcHHHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADH-TGQTALHWS  111 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~-~g~tpLh~A  111 (634)
                      -++.+.++|+.|++.|+.+.+++|++ .|.+++.++..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHH-cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            46788899999999999999999999 7899999999999999999999999999999999999886654 599999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC-HHHHHHH
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF-ADCIRLL  190 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~L  190 (634)
                      +..|+.+++++|++.|++++.++..|.||||.|+..|+.+++++|++. +++++.+|..|.||||+|+..+. .+++++|
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence            999999999999999999999999999999999999999999999998 99999999999999999997776 7999999


Q ss_pred             hhcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH
Q 006702          191 LFLDAYRGRQDK-EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR  263 (634)
Q Consensus       191 l~~ga~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~  263 (634)
                      ++.|++++..+. .|.||||+|+..|+.+++++|+++|  ++++.+|..|.||+++|++.++.+++++|.+.+.
T Consensus       163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG--ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            999999999997 8999999999999999999999999  6788999999999999999999999999976543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.3e-36  Score=314.13  Aligned_cols=225  Identities=26%  Similarity=0.331  Sum_probs=208.3

Q ss_pred             cccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 006702           31 VVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW  110 (634)
Q Consensus        31 ~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~  110 (634)
                      ...+..+.||||.|+..|+.++++.|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus        52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~  130 (351)
T 3utm_A           52 HASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE  130 (351)
T ss_dssp             CCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            3456778999999999999999999999 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCCCCCccc------------------------------------------------------cC
Q 006702          111 SAVRGAIQVAELLLREGARVNAAD------------------------------------------------------MY  136 (634)
Q Consensus       111 A~~~g~~~iv~~Ll~~gad~~~~d------------------------------------------------------~~  136 (634)
                      |+..|+.+++++|+++|++++..+                                                      ..
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  210 (351)
T 3utm_A          131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS  210 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCC
Confidence            999999999999999999987654                                                      45


Q ss_pred             CChHHHHHHHh---CCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHH
Q 006702          137 GYQTTHVAAQY---GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAI  213 (634)
Q Consensus       137 g~t~L~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~  213 (634)
                      |.||||+|+..   +..+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL  289 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            67899999998   557899999987 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH
Q 006702          214 RGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR  263 (634)
Q Consensus       214 ~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~  263 (634)
                      .|+.++|++|+++|  ++++.+|..|.||+++|    +.+++++|.+...
T Consensus       290 ~~~~~~v~~Ll~~g--ad~~~~~~~g~tal~~a----~~~~~~~l~~~~~  333 (351)
T 3utm_A          290 AGHLQTCRLLLSYG--SDPSIISLQGFTAAQMG----NEAVQQILSESTP  333 (351)
T ss_dssp             HTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHS----CHHHHHHHHHC--
T ss_pred             cCcHHHHHHHHHcC--CCCCCcCCCCCChhhhh----hHHHHHHHHhccc
Confidence            99999999999999  67889999999999998    5678888866543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-37  Score=326.93  Aligned_cols=224  Identities=25%  Similarity=0.321  Sum_probs=209.5

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHh-------ccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcH
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVE-------CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTA  107 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~-------~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tp  107 (634)
                      ..++|+||.|+..|+.++++.|+.       ..|++++.+|..|.||||+|+..|+.++|++|+++|++++.++..|.||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            679999999999999988888873       4799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcC---CCCCccccCCChHHHHHHHhC---CHHHHHHHHHccCCCCCC--------CCCCCCh
Q 006702          108 LHWSAVRGAIQVAELLLREG---ARVNAADMYGYQTTHVAAQYG---QTAFLYHIVSKWNADPDV--------PDNDGRS  173 (634)
Q Consensus       108 Lh~A~~~g~~~iv~~Ll~~g---ad~~~~d~~g~t~L~~Aa~~g---~~~~v~~Ll~~~~~~~~~--------~d~~g~t  173 (634)
                      ||+|+..|+.+++++|+++|   ++++..|..|.||||+|+..+   +.+++++|++. |++++.        .|..|.|
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCC
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCC
Confidence            99999999999999999998   899999999999999999998   88999999988 888876        6778999


Q ss_pred             HHHHHHhcCCHHHHHHHhhcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcH
Q 006702          174 PLHWAAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR  252 (634)
Q Consensus       174 ~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~  252 (634)
                      |||+|+..|+.+++++|++.+ ++++.+|..|.||||+|+..|+.++|++|+++|  ++++.+|..|.|||++|+..++.
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--ad~~~~d~~g~t~l~~A~~~g~~  359 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG--ASVEAVDATDHTARQLAQANNHH  359 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccCCCCCCCCHHHHHHHcCCH
Confidence            999999999999999999886 999999999999999999999999999999999  67888999999999999999999


Q ss_pred             HHHHHHHHH
Q 006702          253 QVAFFLGNA  261 (634)
Q Consensus       253 ~i~~~L~~~  261 (634)
                      +++++|.+.
T Consensus       360 ~iv~~Ll~~  368 (373)
T 2fo1_E          360 NIVDIFDRC  368 (373)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999998643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.6e-36  Score=298.09  Aligned_cols=211  Identities=28%  Similarity=0.371  Sum_probs=193.9

Q ss_pred             CCHHHHHHHHhccCCCCcCC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 006702           48 GDLEKLQRLVECEGCSVSEP-DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLRE  126 (634)
Q Consensus        48 g~~~~v~~Ll~~~~~~~~~~-d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~  126 (634)
                      |+.+++++|++ .|.+++.. |..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus         2 g~~~~i~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIY-QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEE-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHH-cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            67788888888 67777765 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCC
Q 006702          127 GA-RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGC  205 (634)
Q Consensus       127 ga-d~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~  205 (634)
                      ++ +++.++..|.||||+|+..++.+++++|++. +++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  159 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  159 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence            87 8899999999999999999999999999987 999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH
Q 006702          206 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       206 TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~  262 (634)
                      ||||+|+..|+.+++++|+++|  ++++.+|..|.||+++|++.++.+++++|.+.+
T Consensus       160 t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVLLDHF--ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC--CCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            9999999999999999999999  577889999999999999999999999986543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.2e-36  Score=301.17  Aligned_cols=224  Identities=24%  Similarity=0.242  Sum_probs=167.0

Q ss_pred             CCCcCCCCCCchHHHHHHHcC-------------CHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCCHHHHHHHHhcC
Q 006702           62 CSVSEPDGLGYYALQWAALNN-------------RTAAAQYIIEHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREG  127 (634)
Q Consensus        62 ~~~~~~d~~g~t~Lh~Aa~~g-------------~~~~v~~Ll~~gad~n~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~g  127 (634)
                      .++|.+|..|.||||+|+..|             +.+++++|+++|++++. .|..|.||||+|+..|+.+++++|+++|
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   80 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS   80 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            367889999999999999977             89999999999999865 4889999999999999999999999999


Q ss_pred             CCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcH
Q 006702          128 ARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP  207 (634)
Q Consensus       128 ad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp  207 (634)
                      ++++.+|..|.||||+|+..|+.+++++|++....+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~  160 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA  160 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            99999999999999999999999999999998555999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccccCcchh
Q 006702          208 LHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKLGLAPA  286 (634)
Q Consensus       208 Lh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~g~~~l  286 (634)
                      ||+|+..|+.+++++|+++|  ++++.+|..|.||||+|+..++.+++++|.+.+. ...++..+.+|++.+.+.|...+
T Consensus       161 L~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNG--ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHH
Confidence            99999999999999999999  6788899999999999999999999999876542 22344455566666555555554


Q ss_pred             H
Q 006702          287 L  287 (634)
Q Consensus       287 ~  287 (634)
                      .
T Consensus       239 ~  239 (253)
T 1yyh_A          239 V  239 (253)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2e-35  Score=300.45  Aligned_cols=210  Identities=24%  Similarity=0.273  Sum_probs=186.6

Q ss_pred             CcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChH
Q 006702           64 VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGD---VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQT  140 (634)
Q Consensus        64 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad---~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~  140 (634)
                      ++.+|..|.||||+|+..|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            467899999999999999999999999999998   88999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHccCC-----------------------------------------------CCCCCCCCCCh
Q 006702          141 THVAAQYGQTAFLYHIVSKWNA-----------------------------------------------DPDVPDNDGRS  173 (634)
Q Consensus       141 L~~Aa~~g~~~~v~~Ll~~~~~-----------------------------------------------~~~~~d~~g~t  173 (634)
                      ||+|+..|+.+++++|++. +.                                               +++.+|..|.|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            9999999999999999976 33                                               37788999999


Q ss_pred             HHHHHHhcCCHHHHHHHhhcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcH
Q 006702          174 PLHWAAYKGFADCIRLLLFLDAYRGRQDKE-GCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR  252 (634)
Q Consensus       174 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~  252 (634)
                      |||+|+..|+.+++++|++.|++++.++.. |.||||+|+..|+.++|++|+++|  ++++.+|..|.||||+|+..++.
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--ad~~~~d~~g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG--ADPTARMYGGRTPLGSALLRPNP  238 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC--CCCcccccCCCCHHHHHHHcCCc
Confidence            999999999999999999999999999865 999999999999999999999999  67889999999999999999999


Q ss_pred             HHHHHHHHHHH-HhcccCCCCCCcc
Q 006702          253 QVAFFLGNARR-LLDKRCDGNSPIG  276 (634)
Q Consensus       253 ~i~~~L~~~~~-l~~~~~~~~~~~~  276 (634)
                      +++++|.+.+. +..++..+.+|+.
T Consensus       239 ~~v~~Ll~~ga~~~~~~~~g~tpl~  263 (282)
T 1oy3_D          239 ILARLLRAHGAPEPEDGGDKLSPCS  263 (282)
T ss_dssp             HHHHHHHHTTCCCCCCC--------
T ss_pred             HHHHHHHHcCCCcCcCCCccccccc
Confidence            99999876443 2223334444443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.6e-35  Score=288.48  Aligned_cols=219  Identities=22%  Similarity=0.323  Sum_probs=200.1

Q ss_pred             CCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHH
Q 006702           62 CSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT  141 (634)
Q Consensus        62 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L  141 (634)
                      .+++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 006702          142 HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACT  221 (634)
Q Consensus       142 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~  221 (634)
                      |+|+..|+.+++++|++..+.+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999999855999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccccC
Q 006702          222 VLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKLG  282 (634)
Q Consensus       222 ~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~g  282 (634)
                      +|+++|  ++++.+|..|.||||+|+..++.+++++|.+.+. +..++..+.+|++.+...+
T Consensus       162 ~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          162 ILLAAK--CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS  221 (237)
T ss_dssp             HHHTTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred             HHHHcC--CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence            999999  6788899999999999999999999999865432 2233445555555555444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.6e-34  Score=286.82  Aligned_cols=220  Identities=22%  Similarity=0.273  Sum_probs=197.4

Q ss_pred             CcCCCCCCchHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCCh
Q 006702           64 VSEPDGLGYYALQWAALNNRTAAAQYIIE----HGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQ  139 (634)
Q Consensus        64 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~----~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t  139 (634)
                      ++.+|..|.||||+|+..|+.+++++|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            35789999999999999999999999997    79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHccCC----CCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCC-CCCCcHHHHHHHc
Q 006702          140 TTHVAAQYGQTAFLYHIVSKWNA----DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIR  214 (634)
Q Consensus       140 ~L~~Aa~~g~~~~v~~Ll~~~~~----~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~  214 (634)
                      |||+|+..|+.+++++|++. +.    +++..|..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence            99999999999999999998 54    889999999999999999999999999999999999998 8899999999999


Q ss_pred             CCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccccCcchh
Q 006702          215 GNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKLGLAPA  286 (634)
Q Consensus       215 g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~g~~~l  286 (634)
                      |+.+++++|+++|  ++++.+|..|.||||+|+..++.+++++|.+.+. +..++..+.+|++.+...|...+
T Consensus       161 ~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i  231 (241)
T 1k1a_A          161 NSLSMVQLLLQHG--ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI  231 (241)
T ss_dssp             TCHHHHHHHHHTT--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             CCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHH
Confidence            9999999999999  6788999999999999999999999999876543 33355667777777766655443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.5e-36  Score=319.50  Aligned_cols=247  Identities=21%  Similarity=0.198  Sum_probs=210.4

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCC-CCCchHHHHHHHcCCHHHHHHHH--------hcCCCCCCCCC
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPD-GLGYYALQWAALNNRTAAAQYII--------EHGGDVNAADH  102 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~gad~n~~~~  102 (634)
                      ..+..+.++||.|+..|+ ++++.|+.   .+++..| ..|.||||+|+..|+.+++++|+        +.|+++|.+|.
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~  164 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC  164 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence            346678999999999654 67777754   4678888 78999999999999998887776        88999999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccC---CCCCCCCCCCChHHHHHH
Q 006702          103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN---ADPDVPDNDGRSPLHWAA  179 (634)
Q Consensus       103 ~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~---~~~~~~d~~g~t~Lh~A~  179 (634)
                      .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|++. +   .+++..|..|.||||+|+
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS-TKLKGDIEELDRNGMTALMIVA  243 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS-HHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhc-CccccChhhcCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987 4   799999999999999999


Q ss_pred             hcC---CHHHHHHHhhcCCCCCC--------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHh
Q 006702          180 YKG---FADCIRLLLFLDAYRGR--------QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD  248 (634)
Q Consensus       180 ~~g---~~~~v~~Ll~~ga~~~~--------~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~  248 (634)
                      ..+   +.+++++|++.|++++.        +|..|.||||+|+..|+.++|++|++++. ++++.+|..|.||||+|+.
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~n~~d~~g~TpL~~A~~  322 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG-SNKDKQDEDGKTPIMLAAQ  322 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC-CCTTCCCTTCCCHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC-CCccCcCCCCCCHHHHHHH
Confidence            998   88999999999999886        67799999999999999999999998863 5788999999999999999


Q ss_pred             cCcHHHHHHHHHHHH-HhcccCCCCCCcccccccCcc
Q 006702          249 KNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKLGLA  284 (634)
Q Consensus       249 ~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~g~~  284 (634)
                      .|+.+++++|.+.+. +...+..+.++++.+...|..
T Consensus       323 ~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~  359 (373)
T 2fo1_E          323 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH  359 (373)
T ss_dssp             HTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCH
Confidence            999999999876432 122333344444444444443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.7e-35  Score=299.90  Aligned_cols=222  Identities=16%  Similarity=0.115  Sum_probs=200.9

Q ss_pred             cccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 006702           31 VVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW  110 (634)
Q Consensus        31 ~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~  110 (634)
                      ...+..+.||||.|+..|+.++++.|++ .|++++..|  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence            4567789999999999999999999999 688888874  8999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCCCCCccccCC-ChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHH
Q 006702          111 SAVRGAIQVAELLLREGARVNAADMYG-YQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL  189 (634)
Q Consensus       111 A~~~g~~~iv~~Ll~~gad~~~~d~~g-~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  189 (634)
                      |+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|++. +.+.... ..|.||||+|+..|+.+++++
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~g~t~L~~A~~~g~~~~v~~  179 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFDL-AILLSCIHITIKNGHVDMMIL  179 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCCC-STHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCccccc-cCCccHHHHHHHcChHHHHHH
Confidence            999999999999999999999999999 7999999999999999999988 6655222 289999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHHHhc
Q 006702          190 LLFLDAYRGRQDKEGCTP-LHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLD  266 (634)
Q Consensus       190 Ll~~ga~~~~~d~~g~Tp-Lh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~l~~  266 (634)
                      |++.|++++.+|..|.|| ||+|+..|+.+++++|+++|  ++++.+|       +.|+..++.+++++|.+.+.-..
T Consensus       180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g--ad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD--INIYSAN-------LENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             HHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC--BCSTTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC--CCCCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence            999999999999999998 99999999999999999999  5666776       35678899999999987765443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1e-33  Score=278.04  Aligned_cols=195  Identities=24%  Similarity=0.246  Sum_probs=189.2

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTALHWS  111 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga-d~n~~~~~g~tpLh~A  111 (634)
                      .+..+.++||.|++.|+.++++.|++ .+++++..|..|.||||+|+..|+.+++++|+++++ +++..+..|.||||+|
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   99 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA   99 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH
Confidence            36678999999999999999999998 799999999999999999999999999999999987 8999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHh
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL  191 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  191 (634)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+
T Consensus       100 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  178 (223)
T 2f8y_A          100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLL  178 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 006702          192 FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK  229 (634)
Q Consensus       192 ~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~  229 (634)
                      +.|++++.+|..|.||||+|+..++.+++++|+++|+.
T Consensus       179 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          179 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999954

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1e-33  Score=296.59  Aligned_cols=220  Identities=24%  Similarity=0.242  Sum_probs=196.1

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCC---------------------------------CcCCCCCCchHHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCS---------------------------------VSEPDGLGYYALQWAAL   80 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~---------------------------------~~~~d~~g~t~Lh~Aa~   80 (634)
                      ++.+.||||.||+.|+.++|+.||+ .|++                                 ++..|..|.||||+|+.
T Consensus        56 ~~~g~TpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~  134 (337)
T 4g8k_A           56 EEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV  134 (337)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHH
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHH-cCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHH
Confidence            4558999999999999999999998 5554                                 45667889999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCC----------CCCCCcHHHHHHHhCCHHHHHHHHh-cCCCCCccccCCChHHHHHHHhCC
Q 006702           81 NNRTAAAQYIIEHGGDVNAA----------DHTGQTALHWSAVRGAIQVAELLLR-EGARVNAADMYGYQTTHVAAQYGQ  149 (634)
Q Consensus        81 ~g~~~~v~~Ll~~gad~n~~----------~~~g~tpLh~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~L~~Aa~~g~  149 (634)
                      .|+.+++++|+++|++++..          +..|.||||+|+..|+.++|++|++ .|++++.+|..|.|+++.++..+.
T Consensus       135 ~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~  214 (337)
T 4g8k_A          135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD  214 (337)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSC
T ss_pred             cCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcC
Confidence            99999999999999988754          3458999999999999999999996 699999999999999999887654


Q ss_pred             ----HHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 006702          150 ----TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-DAYRGRQDKEGCTPLHWAAIRGNLEACTVLV  224 (634)
Q Consensus       150 ----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  224 (634)
                          ..++++|++. |++++.+|..|.||||+|+..|+.++++.|++. |++++.+|.+|+||||+|+..|+.++|++|+
T Consensus       215 ~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll  293 (337)
T 4g8k_A          215 DSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC  293 (337)
T ss_dssp             TTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                3467777776 999999999999999999999999999999985 8999999999999999999999999999999


Q ss_pred             HcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH
Q 006702          225 QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       225 ~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~  262 (634)
                      ++|+  +++     ..+||++|+..++.+++++|.+.+
T Consensus       294 ~~GA--d~n-----~~~~L~~A~~~~~~~iv~~Ll~~G  324 (337)
T 4g8k_A          294 KRGA--STD-----CGDLVMTARRNYDHSLVKVLLSHG  324 (337)
T ss_dssp             TTSC--SST-----TCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HCCC--CCC-----CCCHHHHHHHcCCHHHHHHHHHCc
Confidence            9995  443     456999999999999999986644

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.6e-34  Score=273.86  Aligned_cols=193  Identities=22%  Similarity=0.272  Sum_probs=149.3

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      +...++|+.|+..|+.+.++.|++..+.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            34567788888888888888877766667777777778888888888888888888888888777777778888888888


Q ss_pred             CCHHHHHHHH-hcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC-----HHHHH
Q 006702          115 GAIQVAELLL-REGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF-----ADCIR  188 (634)
Q Consensus       115 g~~~iv~~Ll-~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~~v~  188 (634)
                      |+.+++++|+ ..+++++.+|..|.||||.|+..|+.+++++|++..+++++.+|..|.||||+|+..+.     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            8888888777 55667777777777888888887888887777777337777777777788888777776     77777


Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          189 LLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       189 ~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      +|++.|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            777777777777777778888888777788887777765

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=4.8e-34  Score=282.27  Aligned_cols=206  Identities=29%  Similarity=0.377  Sum_probs=146.3

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC-----CCCCCCCCcHHHHH
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV-----NAADHTGQTALHWS  111 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~-----n~~~~~g~tpLh~A  111 (634)
                      ++||||.|++.|+.+.++.|++..+.+++.+|..|.||||+|+..|+.+++++|+++|+++     +..|..|.||||+|
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A   82 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA   82 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence            5678888888888888888887557888888888888888888888888888888888776     56667788888888


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHh
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL  191 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  191 (634)
                      +..|+.+++++|+++|++++.++....                     .....+..|..|.||||+|+..|+.+++++|+
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~---------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  141 (232)
T 2rfa_A           83 VINQNVNLVRALLARGASVSARATGSV---------------------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI  141 (232)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCSGG---------------------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCcc---------------------eeecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            888888888888888888877654210                     01223344556677777777777777777777


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCc----cccCCCCCCHHHHHHhcCcHHHHHHHHHHHH
Q 006702          192 FLDAYRGRQDKEGCTPLHWAAIRGNLEAC----TVLVQAGKKEDL----MVTDNTGLTPAQLASDKNHRQVAFFLGNARR  263 (634)
Q Consensus       192 ~~ga~~~~~d~~g~TpLh~A~~~g~~~iv----~~Ll~~g~~~d~----~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~  263 (634)
                      +.|++++.+|..|.||||+|+..|+.+++    ++|+++|++.+.    +.+|..|.|||++|++.|+.+++++|.+.+.
T Consensus       142 ~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          142 EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            77777777777777777777777766666    666666643221    4566667777777777777777766665544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.1e-34  Score=295.00  Aligned_cols=232  Identities=15%  Similarity=0.058  Sum_probs=203.7

Q ss_pred             HHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHH
Q 006702           44 AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELL  123 (634)
Q Consensus        44 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~L  123 (634)
                      ++...+.+.++.+|.+.  +++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|
T Consensus         6 ~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             TGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence            34567777788888744  688999999999999999999999999999999999884  89999999999999999999


Q ss_pred             HhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCC-ChHHHHHHhcCCHHHHHHHhhcCCCCCCCCC
Q 006702          124 LREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDG-RSPLHWAAYKGFADCIRLLLFLDAYRGRQDK  202 (634)
Q Consensus       124 l~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~  202 (634)
                      +++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..| .||||+|+..|+.+++++|++.|++.... .
T Consensus        82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~  159 (285)
T 3kea_A           82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-A  159 (285)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-S
T ss_pred             HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-c
Confidence            999999999999999999999999999999999998 99999999999 89999999999999999999999877332 2


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCH-HHHHHhcCcHHHHHHHHHHHHHhcccCCCCCCccccccc
Q 006702          203 EGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTP-AQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKL  281 (634)
Q Consensus       203 ~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tp-l~~A~~~~~~~i~~~L~~~~~l~~~~~~~~~~~~~~~~~  281 (634)
                      .|.||||+|+..|+.+++++|+++|  ++++.+|..|.|| ||+|+..++.+++++|.      +.+.+.+..-..+...
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~g--ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll------~~gad~~~~~~~a~~~  231 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDYM--TSTNTNNSLLFIPDIKLAIDNKDIEMLQALF------KYDINIYSANLENVLL  231 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHH--HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHT------TSCBCSTTTTGGGGTT
T ss_pred             CCccHHHHHHHcChHHHHHHHHHcC--CCCCcccCCCCChHHHHHHHcCCHHHHHHHH------HcCCCCCCCChhhhhc
Confidence            8999999999999999999999999  6788999999998 99999999999999964      3455554443344444


Q ss_pred             CcchhHHH
Q 006702          282 GLAPALWC  289 (634)
Q Consensus       282 g~~~l~~~  289 (634)
                      |...++-+
T Consensus       232 ~~~~iv~~  239 (285)
T 3kea_A          232 DDAEIAKM  239 (285)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHH
Confidence            55444433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.7e-35  Score=293.86  Aligned_cols=216  Identities=20%  Similarity=0.187  Sum_probs=192.0

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhcc---CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECE---GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALH  109 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~---~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh  109 (634)
                      .++.+.|+||.|+..|+.++++.|++..   +.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            4677899999999999999999999832   2378999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCCC------CCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCC-CCChHHHHHHhcC
Q 006702          110 WSAVRGAIQVAELLLREGAR------VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDN-DGRSPLHWAAYKG  182 (634)
Q Consensus       110 ~A~~~g~~~iv~~Ll~~gad------~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g  182 (634)
                      +|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|++. |++++.++. .|.||||+|+..|
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999999999876      467788899999999999999999999987 999999998 9999999999999


Q ss_pred             CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhc
Q 006702          183 FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK  249 (634)
Q Consensus       183 ~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~  249 (634)
                      +.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++.....++.+|.||.+.+.+.
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            9999999999999999999999999999999999999999999997666668888898887766543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.6e-33  Score=278.55  Aligned_cols=199  Identities=19%  Similarity=0.209  Sum_probs=161.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCC-----CccccCCChHHHH
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEH-GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV-----NAADMYGYQTTHV  143 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~-gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~-----~~~d~~g~t~L~~  143 (634)
                      .|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+++     +.+|..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            478999999999999999999987 8999999999999999999999999999999998876     4555667777777


Q ss_pred             HHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 006702          144 AAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL  223 (634)
Q Consensus       144 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~L  223 (634)
                      |+..|+.+++++|++. |++++.++....                    .....+..|..|.||||+|+..|+.+++++|
T Consensus        82 A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~--------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  140 (232)
T 2rfa_A           82 AVINQNVNLVRALLAR-GASVSARATGSV--------------------FHYRPHNLIYYGEHPLSFAACVGSEEIVRLL  140 (232)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCCSGG--------------------GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhC-CCCCCcccCCcc--------------------eeecccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            7777777777766665 666666554321                    0113445566899999999999999999999


Q ss_pred             HHcCCCCCccccCCCCCCHHHHHHhcCcHHHH----HHHHHHHHH-------hcccCCCCCCcccccccCcchhHHHHH
Q 006702          224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVA----FFLGNARRL-------LDKRCDGNSPIGKISKLGLAPALWCVI  291 (634)
Q Consensus       224 l~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~----~~L~~~~~l-------~~~~~~~~~~~~~~~~~g~~~l~~~~i  291 (634)
                      +++|  ++++.+|..|.||||+|+..++.+++    ++|.+.+..       ..++..+.+|++.+...|...++..++
T Consensus       141 l~~g--a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll  217 (232)
T 2rfa_A          141 IEHG--ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM  217 (232)
T ss_dssp             HHTT--CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHCC--CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999  67889999999999999999999988    787765542       256778999999999999888776654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5e-33  Score=268.51  Aligned_cols=191  Identities=25%  Similarity=0.253  Sum_probs=182.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHH
Q 006702           68 DGLGYYALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ  146 (634)
Q Consensus        68 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga-d~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~  146 (634)
                      +..+.||||.|+..|+.+.++.|++.+. +++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            3568899999999999999999999876 999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC-CCCCCCCCCCCcHHHHHHHcCC-----HHHH
Q 006702          147 YGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD-AYRGRQDKEGCTPLHWAAIRGN-----LEAC  220 (634)
Q Consensus       147 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~~g~-----~~iv  220 (634)
                      .|+.+++++|++..+.+++.+|..|.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            999999999998879999999999999999999999999999999999 9999999999999999999998     9999


Q ss_pred             HHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHH
Q 006702          221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN  260 (634)
Q Consensus       221 ~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~  260 (634)
                      ++|+++|  ++++.+|..|.|||++|+..++.+++++|.+
T Consensus       162 ~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          162 KLLMENG--ADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHCC--CCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            9999999  6788999999999999999999999999853

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.7e-33  Score=277.99  Aligned_cols=195  Identities=25%  Similarity=0.319  Sum_probs=189.0

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      ..+..+.++||.|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  113 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA  113 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            346678999999999999999999998 7999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHh
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL  191 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  191 (634)
                      +..|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+
T Consensus       114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  192 (231)
T 3aji_A          114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLV  192 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987 9999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 006702          192 FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK  228 (634)
Q Consensus       192 ~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~  228 (634)
                      +.|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus       193 ~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          193 TQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             HTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            9999999999999999999999999999999999873

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.4e-33  Score=275.10  Aligned_cols=210  Identities=23%  Similarity=0.271  Sum_probs=188.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCcHHHHHHHhCCHHHHHHHHhcC--CCCCc-cccCCChHHHHHHH
Q 006702           71 GYYALQWAALNNRTAAAQYIIEHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREG--ARVNA-ADMYGYQTTHVAAQ  146 (634)
Q Consensus        71 g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~g--ad~~~-~d~~g~t~L~~Aa~  146 (634)
                      |.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|+++|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            78999999999999999999999988654 8899999999999999999999999999  55555 78999999999999


Q ss_pred             hCCHHHHHHHHHccC--CCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 006702          147 YGQTAFLYHIVSKWN--ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLV  224 (634)
Q Consensus       147 ~g~~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  224 (634)
                      .|+.+++++|++. +  .+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999987 6  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHH-HHH-HHhcccCCCCCCcccccccC
Q 006702          225 QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLG-NAR-RLLDKRCDGNSPIGKISKLG  282 (634)
Q Consensus       225 ~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~-~~~-~l~~~~~~~~~~~~~~~~~g  282 (634)
                      ++|. .+++.+|..|.||||+|+..++.+++++|. +.+ .+..++..+.+|++.+.+.+
T Consensus       161 ~~g~-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          161 GLGK-SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             TTTC-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             hcCc-ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence            9983 578889999999999999999999999987 433 33345556667776665543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.5e-34  Score=302.59  Aligned_cols=224  Identities=20%  Similarity=0.207  Sum_probs=202.7

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhc----CCCCCC--------
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEH----GGDVNA--------   99 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~----gad~n~--------   99 (634)
                      ..+..+.||||.|+..|+.++++.|++ .+.+++.  ..|.||||+|+..|+.+++++|+++    |++++.        
T Consensus        48 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  124 (364)
T 3ljn_A           48 IQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDER  124 (364)
T ss_dssp             CCCTTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchH
Confidence            456778999999999999999999999 6664443  4799999999999999999999998    888777        


Q ss_pred             ---------CCCCCCcHHHHHHHhC--CHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCC-----
Q 006702          100 ---------ADHTGQTALHWSAVRG--AIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD-----  163 (634)
Q Consensus       100 ---------~~~~g~tpLh~A~~~g--~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~-----  163 (634)
                               ++..|.||||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +++     
T Consensus       125 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~  203 (364)
T 3ljn_A          125 EVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDT-VPSKSSLR  203 (364)
T ss_dssp             CEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCC
T ss_pred             hhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccc
Confidence                     8889999999999999  99999999999999999999999999999999999999999987 777     


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------cc
Q 006702          164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED----------LM  233 (634)
Q Consensus       164 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d----------~~  233 (634)
                      ++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++|++|+++|++.+          ..
T Consensus       204 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  283 (364)
T 3ljn_A          204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV  283 (364)
T ss_dssp             TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSB
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999984321          12


Q ss_pred             ccCCCCCCHHHHHHhcCcHHHHHHHH
Q 006702          234 VTDNTGLTPAQLASDKNHRQVAFFLG  259 (634)
Q Consensus       234 ~~d~~g~Tpl~~A~~~~~~~i~~~L~  259 (634)
                      ..+..+.||++.|+..++.+.+..|.
T Consensus       284 ~~~~~~~~~l~~aa~~~~~~~v~~ll  309 (364)
T 3ljn_A          284 LPDRVVWLDFVPAAADPSKQEVLQLL  309 (364)
T ss_dssp             CGGGCCCCTTSCSSCCHHHHHHHHHH
T ss_pred             cccccccccchhhhhccCHHHHHHHH
Confidence            35678899999999998776555543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.6e-33  Score=261.10  Aligned_cols=156  Identities=38%  Similarity=0.519  Sum_probs=104.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHH
Q 006702           74 ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL  153 (634)
Q Consensus        74 ~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v  153 (634)
                      +|+.||..|+.++|++|+++|+|+|.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence            46666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 006702          154 YHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE  230 (634)
Q Consensus       154 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~  230 (634)
                      ++|++. |++++.+|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus        87 ~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           87 KLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            666665 6666666777777777777777777777777777777777777777777777777777777777777443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.7e-33  Score=286.73  Aligned_cols=235  Identities=23%  Similarity=0.277  Sum_probs=205.1

Q ss_pred             HHHHcCCHHHHHHHHhccCCCCc---------CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 006702           43 TAAAYGDLEKLQRLVECEGCSVS---------EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV  113 (634)
Q Consensus        43 ~Aa~~g~~~~v~~Ll~~~~~~~~---------~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~  113 (634)
                      .+++.+..+.++.++.+. .++.         ..+..|.||||.||..|+.+++++|+++|+++|..|..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSE-TDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTT-TSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccc-cccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            577888888888888743 2221         123457899999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh-
Q 006702          114 RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF-  192 (634)
Q Consensus       114 ~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-  192 (634)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++..|..|.||||+|+..++.++++.++. 
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  161 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999998 99999999999999999999999999987764 


Q ss_pred             cCCCC--------------------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHH
Q 006702          193 LDAYR--------------------------GRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA  246 (634)
Q Consensus       193 ~ga~~--------------------------~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A  246 (634)
                      .+.++                          ...+..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||||+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~d~~~~d~~g~tpL~~A  239 (299)
T 1s70_B          162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR--YDVNIKDYDGWTPLHAA  239 (299)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHH
T ss_pred             cCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC--CCCCCcCCCCCcHHHHH
Confidence            34443                          235678999999999999999999999999  67889999999999999


Q ss_pred             HhcCcHHHHHHHHHHHH-HhcccCCCCCCccccccc
Q 006702          247 SDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKL  281 (634)
Q Consensus       247 ~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~  281 (634)
                      +..++.+++++|.+.+. +...+..+.+|++.+.+.
T Consensus       240 ~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             HhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            99999999999876543 344566777888777553

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=284.21  Aligned_cols=215  Identities=22%  Similarity=0.228  Sum_probs=166.9

Q ss_pred             cCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC--------CCCCCCCCCcHHHHHHHhCCH-HHHHHHHhcCCCCCcccc
Q 006702           65 SEPDGLGYYALQWAALNNRTAAAQYIIEHGGD--------VNAADHTGQTALHWSAVRGAI-QVAELLLREGARVNAADM  135 (634)
Q Consensus        65 ~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad--------~n~~~~~g~tpLh~A~~~g~~-~iv~~Ll~~gad~~~~d~  135 (634)
                      ..+|..+.++|+.||..|+.++|++|++.|++        ++..+..|.|||+.|+..+.. .++++|++.|++++.+|.
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            34677788999999999999999999999875        456677899999999988776 488999999999999999


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcC
Q 006702          136 YGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRG  215 (634)
Q Consensus       136 ~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g  215 (634)
                      .|.||||+|+..|+.+++++|++. +++++.++..|.||+|+|+..++.+++++|++.|++++.+|..|.||||+|+..|
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            999999999999999999999987 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH-HHhcccCCCCCCcccccccC
Q 006702          216 NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR-RLLDKRCDGNSPIGKISKLG  282 (634)
Q Consensus       216 ~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~-~l~~~~~~~~~~~~~~~~~g  282 (634)
                      +.++|++|+++|  ++++.+|..|.||||+|+..|+.+++++|.+.+ .+..++..+.+|++.+.+.+
T Consensus       164 ~~~~v~~Ll~~g--advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          164 HHELVALLLQHG--ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             CGGGHHHHHHTT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             CHHHHHHHHHCC--CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence            999999999999  678899999999999999999999999987654 23344556667776665443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=9.3e-34  Score=287.83  Aligned_cols=211  Identities=23%  Similarity=0.245  Sum_probs=167.0

Q ss_pred             cccccchhhHHHHHHHcCCHHHHHHHHh---ccCCCCc----CCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCC---
Q 006702           31 VVDEESLRNDVYTAAAYGDLEKLQRLVE---CEGCSVS----EPDGLGYYALQWAALN---NRTAAAQYIIEHGGDV---   97 (634)
Q Consensus        31 ~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~---~~~~~~~----~~d~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gad~---   97 (634)
                      ...+..++++||.||+.|+.++|+.|++   ..+.+++    ..|..|.||||+|+..   |+.+++++|+++|+++   
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            3457788999999999999999999887   3566665    4578899999999987   9999999999988652   


Q ss_pred             ----CC----CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCcccc--------------CCChHHHHHHHhCCHHHHHH
Q 006702           98 ----NA----ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADM--------------YGYQTTHVAAQYGQTAFLYH  155 (634)
Q Consensus        98 ----n~----~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~--------------~g~t~L~~Aa~~g~~~~v~~  155 (634)
                          |.    .|..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                32    566899999999999999999999999999999887              78888888888888888888


Q ss_pred             HHHc--cCCCCCCCCCCCChHHHHHHhcCC---------HHHHHHHhhcCCCCC-------CCCCCCCcHHHHHHHcCCH
Q 006702          156 IVSK--WNADPDVPDNDGRSPLHWAAYKGF---------ADCIRLLLFLDAYRG-------RQDKEGCTPLHWAAIRGNL  217 (634)
Q Consensus       156 Ll~~--~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~ga~~~-------~~d~~g~TpLh~A~~~g~~  217 (634)
                      |++.  .|++++.+|..|+||||+|+..|+         .+++++|++.|++++       .+|..|.||||+|+..|+.
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            8883  388888888888888888888887         788888888888886       4788888888888888888


Q ss_pred             HHHHHHHHcCCCCCccccCCCCCCH
Q 006702          218 EACTVLVQAGKKEDLMVTDNTGLTP  242 (634)
Q Consensus       218 ~iv~~Ll~~g~~~d~~~~d~~g~Tp  242 (634)
                      +++++|+++|++ |.......+.+|
T Consensus       247 ~iv~~Ll~~ga~-dp~~~~~~~~~~  270 (273)
T 2pnn_A          247 GVLAYILQREIH-EPECRHAAAHHH  270 (273)
T ss_dssp             HHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHCCCC-Cchhhhhhhhhc
Confidence            888888888852 555555555444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.3e-33  Score=281.96  Aligned_cols=202  Identities=23%  Similarity=0.246  Sum_probs=126.6

Q ss_pred             hhhHHHHHHHcCCHHHH----HHHHhccCCCCcC----CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCC-----
Q 006702           37 LRNDVYTAAAYGDLEKL----QRLVECEGCSVSE----PDGLGYYALQWAALN---NRTAAAQYIIEHGGDVNAA-----  100 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v----~~Ll~~~~~~~~~----~d~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gad~n~~-----  100 (634)
                      ++++||.||+.|+.+.+    ++|++ .+.+++.    .|..|.||||+|+..   |+.+++++|+++|++++..     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHH-cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            56788888888888744    44444 6778887    788888888888888   8888888888887766533     


Q ss_pred             ------CCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChH
Q 006702          101 ------DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP  174 (634)
Q Consensus       101 ------~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  174 (634)
                            |..|.||||+|+..|+.+++++|+++|++++.++..+..                     ..+.+..|..|.||
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~---------------------~~~~~~~~~~g~tp  139 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF---------------------QKHQGTCFYFGELP  139 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG---------------------SCCSSSCCCSCSSH
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccc---------------------cccccccccCCCCH
Confidence                  356888888888888888888888888888877765210                     11122222335555


Q ss_pred             HHHHHhcCCHHHHHHHhh---cCCCCCCCCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCCCc-------ccc
Q 006702          175 LHWAAYKGFADCIRLLLF---LDAYRGRQDKEGCTPLHWAAI--RGNLE-------ACTVLVQAGKKEDL-------MVT  235 (634)
Q Consensus       175 Lh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpLh~A~~--~g~~~-------iv~~Ll~~g~~~d~-------~~~  235 (634)
                      ||+|+..|+.+++++|++   .|++++.+|..|+||||+|+.  .++.+       ++++|+++|  +++       +.+
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g--a~~~~~~~~~~~~  217 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG--ARLCPTVQLEEIS  217 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH--HHHSTTCCGGGCC
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC--CCccccccccccc
Confidence            555555555555555555   555555555555555555555  44444       555555555  233       445


Q ss_pred             CCCCCCHHHHHHhcCcHHHHHHHHHHH
Q 006702          236 DNTGLTPAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       236 d~~g~Tpl~~A~~~~~~~i~~~L~~~~  262 (634)
                      |..|.||||+|+..|+.+++++|.+.+
T Consensus       218 d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          218 NHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            555555555555555555555554433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.3e-34  Score=282.05  Aligned_cols=210  Identities=22%  Similarity=0.263  Sum_probs=184.4

Q ss_pred             cCCCCCCchHHHHHHHcCCHHHHHHHHhcCC----CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChH
Q 006702           65 SEPDGLGYYALQWAALNNRTAAAQYIIEHGG----DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQT  140 (634)
Q Consensus        65 ~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga----d~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~  140 (634)
                      +.+|..|.||||+|+..|+.+++++|++.+.    ++|.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            3568899999999999999999999998765    799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHccCCC------CCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCC-CCCcHHHHHHH
Q 006702          141 THVAAQYGQTAFLYHIVSKWNAD------PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDK-EGCTPLHWAAI  213 (634)
Q Consensus       141 L~~Aa~~g~~~~v~~Ll~~~~~~------~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~TpLh~A~~  213 (634)
                      ||+|+..|+.+++++|++. +.+      ++..|..|.||||+|+..|+.+++++|++.|++++.+|. .|.||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhc-ccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999987 544      577889999999999999999999999999999999998 99999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHHHh---cccCCCCCCccc
Q 006702          214 RGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLL---DKRCDGNSPIGK  277 (634)
Q Consensus       214 ~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~l~---~~~~~~~~~~~~  277 (634)
                      .|+.+++++|+++|  ++++.+|..|.|||++|+..++.+++++|.+.+.-.   ..+.++.++...
T Consensus       161 ~~~~~~v~~Ll~~g--a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~  225 (236)
T 1ikn_D          161 LQNPDLVSLLLKCG--ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT  225 (236)
T ss_dssp             TTCHHHHHHHHTTT--CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCC
T ss_pred             cCCHHHHHHHHHcC--CCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhh
Confidence            99999999999999  678899999999999999999999999987654321   233344455443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.3e-32  Score=257.38  Aligned_cols=161  Identities=34%  Similarity=0.511  Sum_probs=151.7

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA  116 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~  116 (634)
                      ..+.|+.||+.|+.++|+.||+ .|+++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         4 lg~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            4 LGKRLIEAAENGNKDRVKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            3467999999999999999999 899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCC
Q 006702          117 IQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY  196 (634)
Q Consensus       117 ~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~  196 (634)
                      .++|++|+++|+|++.+|..|.||||+|+..|+.+++++|++. |++++.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999999988 999999999999999999999999999999999999


Q ss_pred             CCC
Q 006702          197 RGR  199 (634)
Q Consensus       197 ~~~  199 (634)
                      ++.
T Consensus       162 ie~  164 (169)
T 4gpm_A          162 LEH  164 (169)
T ss_dssp             ---
T ss_pred             cCC
Confidence            875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=7.2e-33  Score=278.39  Aligned_cols=198  Identities=21%  Similarity=0.144  Sum_probs=163.7

Q ss_pred             CCchHHHHHHHcCCHH----HHHHHHhcCCCCCC----CCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCccccCCC
Q 006702           70 LGYYALQWAALNNRTA----AAQYIIEHGGDVNA----ADHTGQTALHWSAVR---GAIQVAELLLREGARVNAADMYGY  138 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~----~v~~Ll~~gad~n~----~~~~g~tpLh~A~~~---g~~~iv~~Ll~~gad~~~~d~~g~  138 (634)
                      .|.||||+|+..|+.+    ++++|+++|++++.    +|..|.||||+|+..   |+.+++++|+++|++++..+.   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~---   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP---   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence            4789999999999997    56777778999998    899999999999999   999999999999988765431   


Q ss_pred             hHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCC-------------CC
Q 006702          139 QTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE-------------GC  205 (634)
Q Consensus       139 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~  205 (634)
                                       ++   ......+|..|.||||+|+..|+.+++++|++.|++++.+|..             |.
T Consensus        78 -----------------~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~  137 (256)
T 2etb_A           78 -----------------LV---NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE  137 (256)
T ss_dssp             -----------------GG---GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCS
T ss_pred             -----------------hc---ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCC
Confidence                             11   1233445567788888888888888888888888888777765             99


Q ss_pred             cHHHHHHHcCCHHHHHHHHH---cCCCCCccccCCCCCCHHHHHHh--cCcHH-------HHHHHHHHHH-H-------h
Q 006702          206 TPLHWAAIRGNLEACTVLVQ---AGKKEDLMVTDNTGLTPAQLASD--KNHRQ-------VAFFLGNARR-L-------L  265 (634)
Q Consensus       206 TpLh~A~~~g~~~iv~~Ll~---~g~~~d~~~~d~~g~Tpl~~A~~--~~~~~-------i~~~L~~~~~-l-------~  265 (634)
                      ||||+|+..|+.+++++|++   +|  ++++.+|..|.||||+|+.  .++.+       ++++|.+.+. +       .
T Consensus       138 tpL~~A~~~~~~~~v~~Ll~~~~~g--a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~  215 (256)
T 2etb_A          138 LPLSLAACTKQWDVVTYLLENPHQP--ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE  215 (256)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCC--CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccC--CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Confidence            99999999999999999999   78  6888999999999999999  78888       9999876554 4       4


Q ss_pred             cccCCCCCCcccccccCcchhHHHHHH
Q 006702          266 DKRCDGNSPIGKISKLGLAPALWCVIL  292 (634)
Q Consensus       266 ~~~~~~~~~~~~~~~~g~~~l~~~~i~  292 (634)
                      .++..+.+|++.+...|...++..++-
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~  242 (256)
T 2etb_A          216 ISNHQGLTPLKLAAKEGKIEIFRHILQ  242 (256)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence            577889999999999999888766543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=1.4e-31  Score=264.83  Aligned_cols=217  Identities=22%  Similarity=0.305  Sum_probs=191.1

Q ss_pred             CcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccc-cCCChHHH
Q 006702           64 VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD-MYGYQTTH  142 (634)
Q Consensus        64 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~t~L~  142 (634)
                      ++..|..|.|+|++|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            45678889999999999999999999999999999999999999999999999999999999999997655 45999999


Q ss_pred             HHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCC-HHHHH
Q 006702          143 VAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN-LEACT  221 (634)
Q Consensus       143 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~-~~iv~  221 (634)
                      +|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++ .++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR  160 (240)
T ss_dssp             HHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred             HHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence            99999999999999987 99999999999999999999999999999999999999999999999999997776 89999


Q ss_pred             HHHHcCCCCCccccCC-CCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccccCc
Q 006702          222 VLVQAGKKEDLMVTDN-TGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKLGL  283 (634)
Q Consensus       222 ~Ll~~g~~~d~~~~d~-~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~g~  283 (634)
                      +|++.|  ++++..+. .|.||||+|+..++.+++++|.+.+. +...+..+.+|++.+.+.|.
T Consensus       161 ~L~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          161 LLLTFN--VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             HHHHTT--CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHhcC--CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence            999999  57777886 89999999999999999999876532 22223333444444444333

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=1.8e-32  Score=278.26  Aligned_cols=203  Identities=21%  Similarity=0.215  Sum_probs=175.9

Q ss_pred             cCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHh----cCCCCC----CCCCCCCcHHHHHHHh---CCHHHHHHHHhcCC
Q 006702           60 EGCSVSEPDGLGYYALQWAALNNRTAAAQYIIE----HGGDVN----AADHTGQTALHWSAVR---GAIQVAELLLREGA  128 (634)
Q Consensus        60 ~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~----~gad~n----~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~ga  128 (634)
                      .++..+..|..|.||||+|+..|+.++|+.|++    .+++++    ..|..|.||||+|+..   |+.+++++|+++|+
T Consensus         2 ~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             ---------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             CcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            345667789999999999999999999998886    566766    4578999999999987   99999999999987


Q ss_pred             CC-------Cc----cccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCC--------------CCChHHHHHHhcCC
Q 006702          129 RV-------NA----ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDN--------------DGRSPLHWAAYKGF  183 (634)
Q Consensus       129 d~-------~~----~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~g~  183 (634)
                      ++       +.    +|..|.||||+|+..|+.+++++|++. |++++.++.              .|.||||+|+..|+
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~  160 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ  160 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCC
Confidence            63       22    567999999999999999999999998 999999987              79999999999999


Q ss_pred             HHHHHHHhh---cCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCc-----cccCCCCCCHHHHH
Q 006702          184 ADCIRLLLF---LDAYRGRQDKEGCTPLHWAAIRGN---------LEACTVLVQAGKKEDL-----MVTDNTGLTPAQLA  246 (634)
Q Consensus       184 ~~~v~~Ll~---~ga~~~~~d~~g~TpLh~A~~~g~---------~~iv~~Ll~~g~~~d~-----~~~d~~g~Tpl~~A  246 (634)
                      .+++++|++   .|++++.+|..|+||||+|+..|+         .+++++|+++|++++.     +.+|..|.||||+|
T Consensus       161 ~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            999999999   999999999999999999999998         8999999999954432     35899999999999


Q ss_pred             HhcCcHHHHHHHHHHHH
Q 006702          247 SDKNHRQVAFFLGNARR  263 (634)
Q Consensus       247 ~~~~~~~i~~~L~~~~~  263 (634)
                      +..|+.+++++|.+.+.
T Consensus       241 ~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          241 ASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHTTCHHHHHHHHHHHT
T ss_pred             HHhChHHHHHHHHHCCC
Confidence            99999999999877654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.6e-32  Score=274.77  Aligned_cols=192  Identities=22%  Similarity=0.242  Sum_probs=119.3

Q ss_pred             chhhHHHHHHHcCCHHHHHHHHh---ccCCCCcCCC----CCCchHHHHHH---HcCCHHHHHHHHhcCCC---------
Q 006702           36 SLRNDVYTAAAYGDLEKLQRLVE---CEGCSVSEPD----GLGYYALQWAA---LNNRTAAAQYIIEHGGD---------   96 (634)
Q Consensus        36 ~~~~~L~~Aa~~g~~~~v~~Ll~---~~~~~~~~~d----~~g~t~Lh~Aa---~~g~~~~v~~Ll~~gad---------   96 (634)
                      .++++||.||+.|+.+.++.|++   ..+.+++..+    ..|.||||+|+   ..|+.+++++|++.|++         
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            46778888888888886555555   3667776554    66888888888   56888888888887643         


Q ss_pred             --CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCcccc--------------CCChHHHHHHHhCCHHHHHHHHHc-
Q 006702           97 --VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADM--------------YGYQTTHVAAQYGQTAFLYHIVSK-  159 (634)
Q Consensus        97 --~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~--------------~g~t~L~~Aa~~g~~~~v~~Ll~~-  159 (634)
                        ++..|..|.||||+|+..|+.++|++|+++|++++.++.              .|.||||+|+..|+.+++++|++. 
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence              344445788888888888888888888888888887773              455555555555555555555541 


Q ss_pred             -cCCCCCCCCCCCChHHHHHHhcCC---------HHHHHHHhhcCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHH
Q 006702          160 -WNADPDVPDNDGRSPLHWAAYKGF---------ADCIRLLLFLDAYR-------GRQDKEGCTPLHWAAIRGNLEACTV  222 (634)
Q Consensus       160 -~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~ga~~-------~~~d~~g~TpLh~A~~~g~~~iv~~  222 (634)
                       .|++++.+|..|+||||+|+..++         .+++++|++.|+++       +.+|..|.||||+|+..|+.+++++
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  243 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH  243 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence             245555555555555555554444         34555555555444       3344555555555555555555555


Q ss_pred             HHHcC
Q 006702          223 LVQAG  227 (634)
Q Consensus       223 Ll~~g  227 (634)
                      |+++|
T Consensus       244 Ll~~g  248 (260)
T 3jxi_A          244 IIRRE  248 (260)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            55544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-32  Score=286.99  Aligned_cols=199  Identities=17%  Similarity=0.164  Sum_probs=168.9

Q ss_pred             HHHHHHcCCHHHHHHHHhccCCCCcC-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC---
Q 006702           41 VYTAAAYGDLEKLQRLVECEGCSVSE-PDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA---  116 (634)
Q Consensus        41 L~~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~---  116 (634)
                      ++.|+..+..++++.|++ .|++++. .|..|.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+   
T Consensus       101 ~~~a~~~~~~~~~~~l~~-~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~  179 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPN-TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD  179 (327)
T ss_dssp             ---CHHHHHHHHHHHCTT-SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHH
T ss_pred             hHHHHHhhHHHHHHHHHh-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccccc
Confidence            466777777777777776 8999999 89999999999999999999999999999999999999999999999998   


Q ss_pred             HHHHHHHHhcC-CCCCccccCCChHHHHHHH----hCCHHHHHHHHHcc-------------------CCCCCCCCCCCC
Q 006702          117 IQVAELLLREG-ARVNAADMYGYQTTHVAAQ----YGQTAFLYHIVSKW-------------------NADPDVPDNDGR  172 (634)
Q Consensus       117 ~~iv~~Ll~~g-ad~~~~d~~g~t~L~~Aa~----~g~~~~v~~Ll~~~-------------------~~~~~~~d~~g~  172 (634)
                      .++++.|++.+ ++++.+|..|.||||+|+.    .|+.+++++|++..                   +++++.+|..|.
T Consensus       180 ~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~  259 (327)
T 1sw6_A          180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  259 (327)
T ss_dssp             TTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             HHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence            78888888887 7899999999999999999    89999999998763                   899999999999


Q ss_pred             hHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcC
Q 006702          173 SPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKN  250 (634)
Q Consensus       173 t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~  250 (634)
                      ||||+|+.      +++|++.  +++.+|..|+||||+|+..|+.++|++|+++|  +|++.+|..|+||||+|++.|
T Consensus       260 t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G--ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          260 DSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYG--ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT--CCTTCCCTTSCCGGGGTCC--
T ss_pred             ChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHhcC
Confidence            99999996      8999988  58899999999999999999999999999999  678899999999999998764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.3e-31  Score=267.95  Aligned_cols=197  Identities=19%  Similarity=0.171  Sum_probs=176.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHH----HHHhcCCCCCCCC----CCCCcHHHHHH---HhCCHHHHHHHHhcCCC-------
Q 006702           68 DGLGYYALQWAALNNRTAAAQ----YIIEHGGDVNAAD----HTGQTALHWSA---VRGAIQVAELLLREGAR-------  129 (634)
Q Consensus        68 d~~g~t~Lh~Aa~~g~~~~v~----~Ll~~gad~n~~~----~~g~tpLh~A~---~~g~~~iv~~Ll~~gad-------  129 (634)
                      +..+.|+||.|+..|+.+.++    +|++.|++++..+    ..|.||||+|+   +.|+.+++++|++.|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            457899999999999999554    5555999998766    67999999999   77999999999998854       


Q ss_pred             ----CCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCC--------------CCCChHHHHHHhcCCHHHHHHHh
Q 006702          130 ----VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD--------------NDGRSPLHWAAYKGFADCIRLLL  191 (634)
Q Consensus       130 ----~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~~v~~Ll  191 (634)
                          ++..|..|.||||+|+..|+.+++++|++. |++++.+|              ..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                455566999999999999999999999997 99999999              68999999999999999999999


Q ss_pred             h---cCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCc-----cccCCCCCCHHHHHHhcCcHHH
Q 006702          192 F---LDAYRGRQDKEGCTPLHWAAIRGN---------LEACTVLVQAGKKEDL-----MVTDNTGLTPAQLASDKNHRQV  254 (634)
Q Consensus       192 ~---~ga~~~~~d~~g~TpLh~A~~~g~---------~~iv~~Ll~~g~~~d~-----~~~d~~g~Tpl~~A~~~~~~~i  254 (634)
                      +   .|++++.+|..|+||||+|+..++         .+++++|+++|++++.     +.+|..|.||||+|+..|+.++
T Consensus       161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  240 (260)
T 3jxi_A          161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI  240 (260)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence            9   999999999999999999999888         7999999999954433     7899999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 006702          255 AFFLGNARRLL  265 (634)
Q Consensus       255 ~~~L~~~~~l~  265 (634)
                      +++|.+.+...
T Consensus       241 v~~Ll~~g~~~  251 (260)
T 3jxi_A          241 FQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhCCCc
Confidence            99998766543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.9e-30  Score=248.96  Aligned_cols=164  Identities=24%  Similarity=0.304  Sum_probs=148.8

Q ss_pred             CCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHH
Q 006702           63 SVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTH  142 (634)
Q Consensus        63 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~  142 (634)
                      .++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            35678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 006702          143 VAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV  222 (634)
Q Consensus       143 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~  222 (634)
                      +|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            99999999999998887 88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcC
Q 006702          223 LVQAG  227 (634)
Q Consensus       223 Ll~~g  227 (634)
                      |+++|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            98875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-31  Score=279.32  Aligned_cols=232  Identities=13%  Similarity=0.053  Sum_probs=179.1

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcC-----------------CCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSE-----------------PDGLGYYALQWAALNNRTAAAQYIIEHGG   95 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~-----------------~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga   95 (634)
                      .+..+.++++     |+.++++.||+ .|++++.                 ......+.+|.|+..+..+++++|++.|+
T Consensus        48 ~~~~g~~~~~-----g~~~~v~~Ll~-~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~  121 (327)
T 1sw6_A           48 ALPSPVVNDN-----EQKMKLEAFLQ-RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL  121 (327)
T ss_dssp             CBCCCCCCCH-----HHHHHHHHHHH-HHHC-------------------------------CHHHHHHHHHHHCTTSCC
T ss_pred             CCCCCCcccC-----chhHHHHHHHH-hccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCC
Confidence            3455666655     99999999998 5666544                 11122234588888888999999999999


Q ss_pred             CCCC-CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC---HHHHHHHHHccCCCCCCCCCCC
Q 006702           96 DVNA-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ---TAFLYHIVSKWNADPDVPDNDG  171 (634)
Q Consensus        96 d~n~-~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~---~~~v~~Ll~~~~~~~~~~d~~g  171 (634)
                      ++|. +|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+   .++++.|++....+++.+|..|
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g  201 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  201 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCC
Confidence            9999 89999999999999999999999999999999999999999999999998   6777788877557899999999


Q ss_pred             ChHHHHHHh----cCCHHHHHHHhhc--------------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          172 RSPLHWAAY----KGFADCIRLLLFL--------------------DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       172 ~t~Lh~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      .||||+|+.    .|+.+++++|++.                    |++++.+|..|.||||+|+.      +++|+++ 
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~-  274 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN-  274 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH-
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh-
Confidence            999999999    8999999999987                    89999999999999999985      9999998 


Q ss_pred             CCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccc
Q 006702          228 KKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISK  280 (634)
Q Consensus       228 ~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~  280 (634)
                         +++.+|..|.||||+|+..|+.+++++|.+.+. +..++..+.+|++.+.+
T Consensus       275 ---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          275 ---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             ---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence               477899999999999999999999999876542 33344555566555544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=9.4e-31  Score=266.63  Aligned_cols=186  Identities=24%  Similarity=0.298  Sum_probs=119.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCC-CCCccccCCChHHHHHH---
Q 006702           72 YYALQWAALNNRTAAAQYIIEHGGD--VNAADHTGQTALHWSAVRGAIQVAELLLREGA-RVNAADMYGYQTTHVAA---  145 (634)
Q Consensus        72 ~t~Lh~Aa~~g~~~~v~~Ll~~gad--~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~ga-d~~~~d~~g~t~L~~Aa---  145 (634)
                      .+++|.|+..++.+.++.|++.+.+  +|.+|..|.||||+|+..|+.+++++|++.|+ +++..|..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            3455666666666666666655544  56666666666666666666666666666665 66666666666666666   


Q ss_pred             --HhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 006702          146 --QYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL  223 (634)
Q Consensus       146 --~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~L  223 (634)
                        ..++.+++++|++. |.+.+..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|
T Consensus       157 ~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence              44556666666655 566666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HH-cCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHH
Q 006702          224 VQ-AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN  260 (634)
Q Consensus       224 l~-~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~  260 (634)
                      ++ .|  ++++.+|..|.|||++|+..|+.+++++|.+
T Consensus       236 l~~~g--ad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          236 LAVPS--CDISLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             HTSTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HhcCC--CCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            66 55  4555666666666666666666666666644

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5.8e-30  Score=240.99  Aligned_cols=168  Identities=21%  Similarity=0.290  Sum_probs=118.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCH
Q 006702           72 YYALQWAALNNRTAAAQYIIEHGGD-VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT  150 (634)
Q Consensus        72 ~t~Lh~Aa~~g~~~~v~~Ll~~gad-~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~  150 (634)
                      .||||.|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            4677777777777777777777665 666677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 006702          151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE  230 (634)
Q Consensus       151 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~  230 (634)
                      +++++|++. +++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  +
T Consensus        83 ~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~--~  159 (172)
T 3v30_A           83 DIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI--L  159 (172)
T ss_dssp             HHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH--H
T ss_pred             HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH--H
Confidence            777777765 7777777777777777777777777777777777777777777777777777777777777777777  4


Q ss_pred             CccccCCCCCCH
Q 006702          231 DLMVTDNTGLTP  242 (634)
Q Consensus       231 d~~~~d~~g~Tp  242 (634)
                      ++..++..|.||
T Consensus       160 ~~~~~~~~~~~p  171 (172)
T 3v30_A          160 KLFQSNLVPADP  171 (172)
T ss_dssp             HHSCC-------
T ss_pred             HHhcccCCCCCC
Confidence            555666666665

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.3e-29  Score=236.53  Aligned_cols=159  Identities=31%  Similarity=0.416  Sum_probs=116.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHh
Q 006702           68 DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY  147 (634)
Q Consensus        68 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~  147 (634)
                      ...+.++|++|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            34456677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       148 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      |+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        91 ~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           91 GHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            777777777765 7777777777777777777777777777777777777777777777777777777777777777654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.8e-30  Score=263.08  Aligned_cols=188  Identities=22%  Similarity=0.270  Sum_probs=178.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCC--CcCCCCCCchHHHHHHHcCCHHHHHHHHhcCC-CCCCCCCCCCcHHHHHH--
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCS--VSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTALHWSA--  112 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~ga-d~n~~~~~g~tpLh~A~--  112 (634)
                      .++++.|+..|+.+.++.+++ .+.+  +|.+|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+  
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~-~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSA-RLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCH-HHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHH-HHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            455678899999999999987 4343  88999999999999999999999999999998 99999999999999999  


Q ss_pred             ---HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHH
Q 006702          113 ---VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL  189 (634)
Q Consensus       113 ---~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  189 (634)
                         ..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence               77899999999999999999999999999999999999999999998 99999999999999999999999999999


Q ss_pred             Hhh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          190 LLF-LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       190 Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      |++ .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999 89999999999999999999999999999999986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.8e-29  Score=234.93  Aligned_cols=157  Identities=27%  Similarity=0.343  Sum_probs=119.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ  149 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~  149 (634)
                      ...||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            34577777777777777777777777777777777777777777 77777777777777777777777777777777777


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 006702          150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAY-RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK  228 (634)
Q Consensus       150 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~  228 (634)
                      .+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        83 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           83 LDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            7777777766 777777777778888888888888888888887776 47777788888888888888888888888774

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3.5e-29  Score=234.46  Aligned_cols=157  Identities=22%  Similarity=0.270  Sum_probs=135.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ  149 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~  149 (634)
                      .|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       150 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      .+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus        82 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           82 TDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            8888888877 8888888888888888888888888888888888888888888888888888888888888888876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.6e-29  Score=238.02  Aligned_cols=169  Identities=19%  Similarity=0.286  Sum_probs=155.9

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI  117 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~  117 (634)
                      .++||.||..|+.+.++.|++.....++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            57899999999999999999955555899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCC
Q 006702          118 QVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR  197 (634)
Q Consensus       118 ~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~  197 (634)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           83 DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987 9999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcH
Q 006702          198 GRQDKEGCTP  207 (634)
Q Consensus       198 ~~~d~~g~Tp  207 (634)
                      ..++..|.||
T Consensus       162 ~~~~~~~~~p  171 (172)
T 3v30_A          162 FQSNLVPADP  171 (172)
T ss_dssp             SCC-------
T ss_pred             hcccCCCCCC
Confidence            9888888887

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=5.9e-29  Score=238.61  Aligned_cols=163  Identities=24%  Similarity=0.305  Sum_probs=157.3

Q ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHH
Q 006702           97 VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLH  176 (634)
Q Consensus        97 ~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  176 (634)
                      +|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHH
Confidence            567889999999999999999999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHH
Q 006702          177 WAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAF  256 (634)
Q Consensus       177 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~  256 (634)
                      +|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||+++|+..++.++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG--ADISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999  678899999999999999999999999


Q ss_pred             HHHHHH
Q 006702          257 FLGNAR  262 (634)
Q Consensus       257 ~L~~~~  262 (634)
                      +|.+.+
T Consensus       185 ~Ll~~~  190 (192)
T 2rfm_A          185 IFTEVR  190 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            997654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=7.7e-29  Score=230.61  Aligned_cols=159  Identities=28%  Similarity=0.353  Sum_probs=150.8

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      +...++|+.|+..|+.+.++.|++ .+.+++.+|..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            467899999999999999999998 889999999999999999999 999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCC-CCCCCCCCChHHHHHHhcCCHHHHHHHhhc
Q 006702          115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD-PDVPDNDGRSPLHWAAYKGFADCIRLLLFL  193 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  193 (634)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998 666 699999999999999999999999999999


Q ss_pred             CCC
Q 006702          194 DAY  196 (634)
Q Consensus       194 ga~  196 (634)
                      |+|
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.9e-28  Score=230.26  Aligned_cols=160  Identities=30%  Similarity=0.487  Sum_probs=152.8

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSA  112 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~  112 (634)
                      ......++|+.||+.|+.+++++|++ .|.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            45678899999999999999999999 79999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh
Q 006702          113 VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF  192 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  192 (634)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988 99999999999999999999999999999998


Q ss_pred             cC
Q 006702          193 LD  194 (634)
Q Consensus       193 ~g  194 (634)
                      .|
T Consensus       168 ~G  169 (169)
T 2y1l_E          168 LN  169 (169)
T ss_dssp             C-
T ss_pred             cC
Confidence            76

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.1e-31  Score=265.87  Aligned_cols=200  Identities=19%  Similarity=0.195  Sum_probs=173.6

Q ss_pred             HHHHHhccCCCCcC---CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Q 006702           53 LQRLVECEGCSVSE---PDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGAR  129 (634)
Q Consensus        53 v~~Ll~~~~~~~~~---~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad  129 (634)
                      ++.||+ .+.+++.   .+..+.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++
T Consensus         1 v~~ll~-~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLR-KAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             Ceehhc-cCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            456777 5666554   456677899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCC-CCCChHHHHH--HhcCCHHHHHHHhhcCCCCCCCCCCCCc
Q 006702          130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-NDGRSPLHWA--AYKGFADCIRLLLFLDAYRGRQDKEGCT  206 (634)
Q Consensus       130 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A--~~~g~~~~v~~Ll~~ga~~~~~d~~g~T  206 (634)
                      ++.+|..|.||||+|+..|+.+++++|++. |++++.++ ..|.||||+|  +..|+.+++++|++.|++++.+|..|.|
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~  158 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY  158 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence            999999999999999999999999999987 99999987 6999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHH
Q 006702          207 PLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFF  257 (634)
Q Consensus       207 pLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~  257 (634)
                      |++.++..+   .+++|++.|++++++.+|..|.||||+|+..|+.++++.
T Consensus       159 ~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          159 ALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             ESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             HHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            999665544   336788889777788999999999999999999988754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.6e-28  Score=224.35  Aligned_cols=150  Identities=24%  Similarity=0.303  Sum_probs=97.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHH
Q 006702           72 YYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA  151 (634)
Q Consensus        72 ~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~  151 (634)
                      .|+||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            456666666666666666666666655 3556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 006702          152 FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL  223 (634)
Q Consensus       152 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~L  223 (634)
                      ++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus        82 ~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           82 IVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            66666654 666666666666666666666666666666666666666666666666666666666666655

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.6e-28  Score=232.84  Aligned_cols=161  Identities=21%  Similarity=0.290  Sum_probs=80.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI  117 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~  117 (634)
                      .++|+.|++.|+.+.++.|++..+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   85 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHR   85 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            34455555555555555555544444555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCC
Q 006702          118 QVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR  197 (634)
Q Consensus       118 ~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~  197 (634)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.|||++|+..++.+++++|++.|+++
T Consensus        86 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           86 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            555555555555544444444444444444444444444443 4444444444444444444444444444444444444


Q ss_pred             CC
Q 006702          198 GR  199 (634)
Q Consensus       198 ~~  199 (634)
                      +.
T Consensus       165 ~~  166 (179)
T 3f6q_A          165 NR  166 (179)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=7.7e-28  Score=225.27  Aligned_cols=159  Identities=23%  Similarity=0.321  Sum_probs=152.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcC
Q 006702          103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG  182 (634)
Q Consensus       103 ~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  182 (634)
                      .|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcC
Confidence            588999999999999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH
Q 006702          183 FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       183 ~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~  262 (634)
                      +.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||+++|+..++.+++++|.+..
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG--ADPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999  677889999999999999999999999997765


Q ss_pred             HH
Q 006702          263 RL  264 (634)
Q Consensus       263 ~l  264 (634)
                      .-
T Consensus       159 ~~  160 (167)
T 3v31_A          159 LK  160 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=2e-28  Score=232.28  Aligned_cols=168  Identities=21%  Similarity=0.266  Sum_probs=155.3

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHh
Q 006702           69 GLGYYALQWAALNNRTAAAQYIIEH-GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY  147 (634)
Q Consensus        69 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~-gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~  147 (634)
                      .++.++||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4578999999999999999999998 678999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       148 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      |+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.|||++|+..++.+++++|+++|
T Consensus        83 ~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           83 GHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            999999999988 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCC
Q 006702          228 KKEDLMVTDNTG  239 (634)
Q Consensus       228 ~~~d~~~~d~~g  239 (634)
                      +  +++..+..+
T Consensus       162 ~--~~~~~~~~~  171 (179)
T 3f6q_A          162 Q--NLNRIPYKD  171 (179)
T ss_dssp             C--CCSCBCCCC
T ss_pred             c--CcccCCccc
Confidence            4  555555443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.6e-28  Score=227.09  Aligned_cols=160  Identities=31%  Similarity=0.467  Sum_probs=102.5

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV  113 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~  113 (634)
                      ++.+.++|+.|++.|+.+.++.|++..+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            45566777777777777777777765566666666666777777777777777777777777777777777777777777


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhc
Q 006702          114 RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL  193 (634)
Q Consensus       114 ~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  193 (634)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+. |+.+++++|++.
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            7777777777776666666666666666666665555555555554 55555555555555555444 555555555554


Q ss_pred             CC
Q 006702          194 DA  195 (634)
Q Consensus       194 ga  195 (634)
                      |+
T Consensus       163 gA  164 (165)
T 3twr_A          163 AA  164 (165)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.5e-28  Score=228.10  Aligned_cols=160  Identities=26%  Similarity=0.280  Sum_probs=144.7

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHH
Q 006702           67 PDGLGYYALQWAALNNRTAAAQYIIE-HGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAA  145 (634)
Q Consensus        67 ~d~~g~t~Lh~Aa~~g~~~~v~~Ll~-~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa  145 (634)
                      .|..|.|+||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            35678899999999999999999998 45678888888999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 006702          146 QYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ  225 (634)
Q Consensus       146 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~  225 (634)
                      ..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+. |+.+++++|++
T Consensus        84 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A           84 SYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            99999999999987 99999999999999999999999999999999999999999999999999776 88999999998


Q ss_pred             cCC
Q 006702          226 AGK  228 (634)
Q Consensus       226 ~g~  228 (634)
                      +|+
T Consensus       162 ~gA  164 (165)
T 3twr_A          162 DAA  164 (165)
T ss_dssp             C--
T ss_pred             ccc
Confidence            873

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.8e-27  Score=220.04  Aligned_cols=151  Identities=29%  Similarity=0.399  Sum_probs=83.0

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI  117 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~  117 (634)
                      .++|+.|+..|+.+.++.|++..+.+++..|..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            4555566666666666665554334555555555566655 555556666665555555555555555555555555555


Q ss_pred             HHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHh
Q 006702          118 QVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL  191 (634)
Q Consensus       118 ~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  191 (634)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|++.  ++++.+|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            555555555555555555555555555555555555554443  444444444444444444444444444444

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.5e-27  Score=218.66  Aligned_cols=151  Identities=24%  Similarity=0.337  Sum_probs=145.5

Q ss_pred             hhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCC
Q 006702           37 LRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA  116 (634)
Q Consensus        37 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~  116 (634)
                      ..++|+.|++.|+.+.++.|++ .+.+++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMA-NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH-HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHH-cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            5789999999999999999999 677776 58889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 006702          117 IQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL  190 (634)
Q Consensus       117 ~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  190 (634)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999999999999999999998 999999999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.3e-27  Score=221.05  Aligned_cols=153  Identities=29%  Similarity=0.343  Sum_probs=141.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC
Q 006702           71 GYYALQWAALNNRTAAAQYIIEH-GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ  149 (634)
Q Consensus        71 g~t~Lh~Aa~~g~~~~v~~Ll~~-gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~  149 (634)
                      +.|+||+|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            56899999999999999999988 44899999999999999 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 006702          150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA  226 (634)
Q Consensus       150 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  226 (634)
                      .+++++|++. |++++.+|..|.||||+|+..|+.+++++|++. ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999987 899999999999999999999999999999988 99999999999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.3e-30  Score=258.12  Aligned_cols=188  Identities=21%  Similarity=0.152  Sum_probs=174.4

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      ..+..+.++|+.|+..|+.++++.|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            356678899999999999999999998 7899999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccc-cCCChHHHHH--HHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHH
Q 006702          112 AVRGAIQVAELLLREGARVNAAD-MYGYQTTHVA--AQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIR  188 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d-~~g~t~L~~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~  188 (634)
                      +..|+.+++++|+++|++++.++ ..|.||||+|  +..|+.+++++|++. |++++.+|..|.||++.++..+.   .+
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~~---~~  170 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAEFG---DE  170 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCSST---TB
T ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHHHhhccc---cc
Confidence            99999999999999999999986 6999999999  999999999999998 99999999999999997665543   36


Q ss_pred             HHhhcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 006702          189 LLLFLDAY--RGRQDKEGCTPLHWAAIRGNLEACTVLV  224 (634)
Q Consensus       189 ~Ll~~ga~--~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  224 (634)
                      +|++.|++  ++.+|..|+||||+|+..|+.++|+.++
T Consensus       171 ~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          171 LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             CCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            88899988  6789999999999999999999998644

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.3e-28  Score=245.17  Aligned_cols=182  Identities=19%  Similarity=0.151  Sum_probs=129.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHh
Q 006702           68 DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQY  147 (634)
Q Consensus        68 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~  147 (634)
                      +..|.||||.|+..++.++++.|+++|++++.. ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            346889999999999999999999999998864 6788999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCC-cHHHHH--HHcCCHHHHHHHH
Q 006702          148 GQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGC-TPLHWA--AIRGNLEACTVLV  224 (634)
Q Consensus       148 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpLh~A--~~~g~~~iv~~Ll  224 (634)
                      |+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|. ||||+|  +..|+.+++++|+
T Consensus        81 g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B           81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             TCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence            999999999987 999999999999999999999999999999999999999988776 999998  7888999999999


Q ss_pred             HcCCCCCcc-------ccCCCCCCHHHHHHhcCc
Q 006702          225 QAGKKEDLM-------VTDNTGLTPAQLASDKNH  251 (634)
Q Consensus       225 ~~g~~~d~~-------~~d~~g~Tpl~~A~~~~~  251 (634)
                      ++|++.+..       ..|..+.+++++|...|.
T Consensus       160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            988544321       226678888888888775

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=6.7e-28  Score=240.00  Aligned_cols=208  Identities=20%  Similarity=0.196  Sum_probs=148.9

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      ..+.|+|+.|++.|+.+.++.|++ .|++++.. ..|.||||+|+..|+.+++++|++.|+++|.+|..|.||||+|+..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhc-cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            468999999999999999999998 88888854 7799999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCC-hHHHHH--HhcCCHHHHHHHh
Q 006702          115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGR-SPLHWA--AYKGFADCIRLLL  191 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~g~~~~v~~Ll  191 (634)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|. ||||+|  +..|+.+++++|+
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence            999999999999999999999999999999999999999999988 999999998887 999999  7889999999999


Q ss_pred             hcCCCCCCC---------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----CccccCCCCCCHHHHHH
Q 006702          192 FLDAYRGRQ---------DKEGCTPLHWAAIRGNLEACTVLVQAGKKE----DLMVTDNTGLTPAQLAS  247 (634)
Q Consensus       192 ~~ga~~~~~---------d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~----d~~~~d~~g~Tpl~~A~  247 (634)
                      +.|++++..         |..+.+++++|...|.  +++.|.+.+.+.    .....+..|.+|..+..
T Consensus       160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~  226 (239)
T 1ycs_B          160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG  226 (239)
T ss_dssp             HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred             HhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence            999988765         5678889988887775  344444333110    01234445556655543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.3e-28  Score=261.07  Aligned_cols=238  Identities=13%  Similarity=-0.021  Sum_probs=169.6

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCC---CcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCcH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCS---VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV---NAADHTGQTA  107 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~---~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~---n~~~~~g~tp  107 (634)
                      +....|+||.||+.|+.+++++|++ .+..   .+..+..|.||||+||.+|+.++|++|+++|+++   +..+.+ .||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            3446799999999999999999998 5542   2244556889999999999999999999999862   333233 899


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCc--cccCCChHHHHHH-HhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCH
Q 006702          108 LHWSAVRGAIQVAELLLREGARVNA--ADMYGYQTTHVAA-QYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA  184 (634)
Q Consensus       108 Lh~A~~~g~~~iv~~Ll~~gad~~~--~d~~g~t~L~~Aa-~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  184 (634)
                      ||+|+..|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.+++++|++. |.       .|.||||+|+..|+.
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~  238 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCCH
Confidence            9999999999999999999999887  8889999999999 99999999999985 43       388999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCC---------------------------HHHHHHHHHcCCC---CCccc
Q 006702          185 DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN---------------------------LEACTVLVQAGKK---EDLMV  234 (634)
Q Consensus       185 ~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~---------------------------~~iv~~Ll~~g~~---~d~~~  234 (634)
                      +++++|++.|++++..|.    ++++|+..|+                           .+.+++|++.+.-   .+...
T Consensus       239 evv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~  314 (376)
T 2aja_A          239 YVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT  314 (376)
T ss_dssp             THHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCS
T ss_pred             HHHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCC
Confidence            999999999987765432    3344444443                           3445555543210   01112


Q ss_pred             cCCCCCCHHHHHHhcCcHHHHHHHHHHHHHhcccCCCCCCcccccccCcchhH
Q 006702          235 TDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPAL  287 (634)
Q Consensus       235 ~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~l~~~~~~~~~~~~~~~~~g~~~l~  287 (634)
                      ..+.+.||+++|+..|+.+++++|.+.+.+  ++..+++++..+...|...+.
T Consensus       315 ~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v--~~~~~~~~~~~~~~~~~~~~~  365 (376)
T 2aja_A          315 IPGDANELLRLALRLGNQGACALLLSIPSV--LALTKANNYYINETGGRLDLR  365 (376)
T ss_dssp             STTCCCHHHHHHHHHTCTTHHHHHTTSHHH--HHSCC----------------
T ss_pred             CCCCccHHHHHHHHcCcHHHHHHHHcChHH--HHHHHHhccccccccccccHH
Confidence            334577899999999999999999775543  344566666666666655443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=8.7e-26  Score=204.10  Aligned_cols=131  Identities=29%  Similarity=0.319  Sum_probs=71.0

Q ss_pred             CCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHH
Q 006702           62 CSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT  141 (634)
Q Consensus        62 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L  141 (634)
                      .+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++.         
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~---------   72 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC---------   72 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC---------
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC---------
Confidence            3445555555555555555555555555555555555555555555555555 555555555555555544         


Q ss_pred             HHHHHhCCHHHHHHHHHccCCCCCCCCCC-CChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 006702          142 HVAAQYGQTAFLYHIVSKWNADPDVPDND-GRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC  220 (634)
Q Consensus       142 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv  220 (634)
                                               +|.. |.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++
T Consensus        73 -------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~  127 (136)
T 1d9s_A           73 -------------------------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIA  127 (136)
T ss_dssp             -------------------------CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHH
T ss_pred             -------------------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence                                     4444 55555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcC
Q 006702          221 TVLVQAG  227 (634)
Q Consensus       221 ~~Ll~~g  227 (634)
                      ++|+++|
T Consensus       128 ~~Ll~~G  134 (136)
T 1d9s_A          128 RYLHAAT  134 (136)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            5555555

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=6.5e-26  Score=210.03  Aligned_cols=142  Identities=27%  Similarity=0.242  Sum_probs=91.8

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCCh-HHHHH
Q 006702           66 EPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQ-TTHVA  144 (634)
Q Consensus        66 ~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t-~L~~A  144 (634)
                      ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            44566777777777777777777777777777777777777777775 77777777777777777777777776 77777


Q ss_pred             HHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHH
Q 006702          145 AQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLH  209 (634)
Q Consensus       145 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh  209 (634)
                      +..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||.+
T Consensus        86 ~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           86 AREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            777777777777665 6777777777777777777777777777777777777777666666655

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=9.1e-26  Score=203.96  Aligned_cols=132  Identities=30%  Similarity=0.360  Sum_probs=117.1

Q ss_pred             CCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCC-CC
Q 006702          127 GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKE-GC  205 (634)
Q Consensus       127 gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~  205 (634)
                      +++++.+|..|.||||.|+..|+.+++++|++. |++++.+|..|.||||+|+. |+.+++++|++.|++++.+|.. |.
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            456677777777777777777777777777766 77778888889999999999 9999999999999999999999 99


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH
Q 006702          206 TPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       206 TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~  262 (634)
                      ||||+|+..|+.+++++|+++|  ++++.+|..|.|||++|+..++.+++++|.+.+
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAG--ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTC--CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999999  678899999999999999999999999997754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.5e-26  Score=221.18  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=109.4

Q ss_pred             chhhHHHHHHHcCCHHHHHHHHhccCCCCcCCC-CCCchHHHHHHHcCCH----HHHHHHHhcCCCCCCCCCCCCcHHHH
Q 006702           36 SLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPD-GLGYYALQWAALNNRT----AAAQYIIEHGGDVNAADHTGQTALHW  110 (634)
Q Consensus        36 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~Aa~~g~~----~~v~~Ll~~gad~n~~~~~g~tpLh~  110 (634)
                      +..++|+.||+.|+.+.++.+++ .+  ++..+ ..|.||||+|+.+|+.    +++++|+++|+|+|.+|..|+||||+
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~-~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFE-KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHH-HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHh-cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45678899999999999988887 33  34444 6688999999998875    48999999999999999999999999


Q ss_pred             HHHhCC------HHHHHHHHhcCCCCCccccCCC-hHHHHHHHhCC-----HHHHHHHHHccCCCCCCCCCCCChHHHHH
Q 006702          111 SAVRGA------IQVAELLLREGARVNAADMYGY-QTTHVAAQYGQ-----TAFLYHIVSKWNADPDVPDNDGRSPLHWA  178 (634)
Q Consensus       111 A~~~g~------~~iv~~Ll~~gad~~~~d~~g~-t~L~~Aa~~g~-----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  178 (634)
                      |+..|+      .+++++|+++|+|++.+|..|. ||||+|+..+.     .+++++|++..|++++.+|..|.||||+|
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            998886      5678888888888888877777 77777776332     23444444422455555555555555555


Q ss_pred             HhcCCHHHHHHHhhc
Q 006702          179 AYKGFADCIRLLLFL  193 (634)
Q Consensus       179 ~~~g~~~~v~~Ll~~  193 (634)
                      +..|+.+++++|.+.
T Consensus       162 ~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          162 KRCQKPIALKMMEDY  176 (186)
T ss_dssp             HTTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            555555555544443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.4e-25  Score=207.73  Aligned_cols=146  Identities=23%  Similarity=0.290  Sum_probs=121.4

Q ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCCh-HH
Q 006702           97 VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRS-PL  175 (634)
Q Consensus        97 ~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~L  175 (634)
                      .+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ .|+.+++++|++. |++++.+|..|.| ||
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPV   82 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence            3455678999999999999999999999999999999999999999985 9999999999987 9999999999999 99


Q ss_pred             HHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHH
Q 006702          176 HWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLA  246 (634)
Q Consensus       176 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A  246 (634)
                      |+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|  ++++.+|..|.||.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA--GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC--CCCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999  67889999999998744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=4.3e-26  Score=218.02  Aligned_cols=154  Identities=15%  Similarity=0.022  Sum_probs=119.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHHHhCCH----HHHHHHHhcCCCCCccccCCChHHHHHH
Q 006702           71 GYYALQWAALNNRTAAAQYIIEHGGDVNAAD-HTGQTALHWSAVRGAI----QVAELLLREGARVNAADMYGYQTTHVAA  145 (634)
Q Consensus        71 g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~-~~g~tpLh~A~~~g~~----~iv~~Ll~~gad~~~~d~~g~t~L~~Aa  145 (634)
                      ++++|+.|+..|+.+.++.+++.+.  +.++ ..|+||||+|+..|+.    +++++|+++|+|++.+|..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4577888999999988888887653  4455 5688999999888875    4888888989988888888888888888


Q ss_pred             HhCC------HHHHHHHHHccCCCCCCCCCCCC-hHHHHHHhcCC-----HHHHHHHhh-cCCCCCCCCCCCCcHHHHHH
Q 006702          146 QYGQ------TAFLYHIVSKWNADPDVPDNDGR-SPLHWAAYKGF-----ADCIRLLLF-LDAYRGRQDKEGCTPLHWAA  212 (634)
Q Consensus       146 ~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g~-----~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~  212 (634)
                      ..++      .+++++|++. |++++.+|..|. ||||+|+..+.     .+++++|++ .|++++.+|..|.||||+|+
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            8876      4667777776 777777777777 77777777443     357777777 77777777777777777777


Q ss_pred             HcCCHHHHHHHHHcC
Q 006702          213 IRGNLEACTVLVQAG  227 (634)
Q Consensus       213 ~~g~~~iv~~Ll~~g  227 (634)
                      ..|+.++|++|++..
T Consensus       163 ~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          163 RCQKPIALKMMEDYI  177 (186)
T ss_dssp             TTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            777777777777664

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=7.8e-24  Score=191.19  Aligned_cols=122  Identities=28%  Similarity=0.369  Sum_probs=58.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ  149 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~  149 (634)
                      .+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~   92 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH   92 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            34455555555555555555555555555555555555555555555555555555555544444444444444444444


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh
Q 006702          150 TAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF  192 (634)
Q Consensus       150 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  192 (634)
                      .+++++|++. |++++.+|..|.||||+|+..|+.+++++|++
T Consensus        93 ~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           93 LEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            4444444433 44444444444444444444444444444433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.6e-23  Score=185.38  Aligned_cols=124  Identities=39%  Similarity=0.583  Sum_probs=64.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCH
Q 006702           71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT  150 (634)
Q Consensus        71 g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~  150 (634)
                      |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            45555555555555555555555555555555555555555555555555555555555555544444444444444444


Q ss_pred             HHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCC
Q 006702          151 AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA  195 (634)
Q Consensus       151 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga  195 (634)
                      +++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        82 ~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           82 EVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            444444443 44444444444444444444444444444444443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.3e-23  Score=189.85  Aligned_cols=126  Identities=28%  Similarity=0.318  Sum_probs=118.3

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHh
Q 006702          101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAY  180 (634)
Q Consensus       101 ~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  180 (634)
                      ...+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+.
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999987 99999999999999999999


Q ss_pred             cCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          181 KGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       181 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      .|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.8e-23  Score=183.68  Aligned_cols=125  Identities=41%  Similarity=0.619  Sum_probs=120.8

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcC
Q 006702          103 TGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKG  182 (634)
Q Consensus       103 ~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  182 (634)
                      +|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..++.+++++|++. +++++.+|..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcC
Confidence            489999999999999999999999999999999999999999999999999999987 9999999999999999999999


Q ss_pred             CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 006702          183 FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK  228 (634)
Q Consensus       183 ~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~  228 (634)
                      +.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999984

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.7e-26  Score=244.79  Aligned_cols=193  Identities=13%  Similarity=0.069  Sum_probs=112.1

Q ss_pred             hHHHHHHH-cCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCcHHHHHHHh
Q 006702           39 NDVYTAAA-YGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDV---NAADHTGQTALHWSAVR  114 (634)
Q Consensus        39 ~~L~~Aa~-~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~---n~~~~~g~tpLh~A~~~  114 (634)
                      +.++.|+. .++.+.++++++ .+.       .+.||||+||..|+.++|++|+++|+..   +..+..|.||||+|+..
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~-~g~-------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHK-KGI-------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHH-HTC-------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCHHHHHHHHH-cCC-------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            34455544 355666666665 332       2346777777777777777777666522   12233456677777777


Q ss_pred             CCHHHHHHHHhcCCCC---CccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCC--CCCCCChHHHHHH-hcCCHHHHH
Q 006702          115 GAIQVAELLLREGARV---NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV--PDNDGRSPLHWAA-YKGFADCIR  188 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~---~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~~v~  188 (634)
                      |+.++|++|+++|+|+   +..+.. .||||+|+..|+.+++++|++. |++++.  .|..|.||||+|+ ..|+.++++
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            7777777777776542   222222 6666666666666666666665 666555  5666666666666 666666666


Q ss_pred             HHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHH
Q 006702          189 LLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV  254 (634)
Q Consensus       189 ~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i  254 (634)
                      +|++.|++       |.||||+|+..|+.+++++|+++|  .+++.+|    ++++.|+..|+.++
T Consensus       217 ~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~g--a~~~~~~----~~l~~A~~~g~~~v  269 (376)
T 2aja_A          217 FLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHV--NRLKEMH----DAFKLSNPDGVFDL  269 (376)
T ss_dssp             HHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHH--HHHHHHH----TTTTTTSSSSCCCC
T ss_pred             HHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcC--ccccccc----HHHHHHHHCCChhh
Confidence            66665532       556666666666666666666666  2333333    24555555555543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1e-23  Score=190.48  Aligned_cols=131  Identities=24%  Similarity=0.315  Sum_probs=89.7

Q ss_pred             CCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHH
Q 006702           62 CSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT  141 (634)
Q Consensus        62 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L  141 (634)
                      +|+ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL   80 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHH
Confidence            444 5566777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC
Q 006702          142 HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD  194 (634)
Q Consensus       142 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  194 (634)
                      |+|+..|+.+++++|++. |++++.+|..|.||||+|+..+..+++++|.+.+
T Consensus        81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            777777777777766665 6666667777777777776666666666555433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=2.6e-23  Score=197.89  Aligned_cols=137  Identities=26%  Similarity=0.255  Sum_probs=71.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccc-cCCChHHHHHHHhC
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD-MYGYQTTHVAAQYG  148 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~t~L~~Aa~~g  148 (634)
                      .|.||||+|+..|+.+++++|++ |+++|.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            44555555555555555555555 55555555555555555555555555555555555555544 44555555555555


Q ss_pred             CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 006702          149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ  225 (634)
Q Consensus       149 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~  225 (634)
                      +.+++++|++. |++++.+|..|.||||+|+..++.                 ..+.+||++|+..|..+++++|.+
T Consensus       122 ~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          122 RPEVVEALVEL-GADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             CHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            55555555544 555555555555555555442211                 223455555555555555555544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=9.9e-24  Score=190.59  Aligned_cols=131  Identities=27%  Similarity=0.367  Sum_probs=83.3

Q ss_pred             CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCCh
Q 006702           94 GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRS  173 (634)
Q Consensus        94 gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  173 (634)
                      |+|+ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCC
Confidence            4555 5566677777777777777777777777777766666666666666666666666666655 6666666666666


Q ss_pred             HHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 006702          174 PLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA  226 (634)
Q Consensus       174 ~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  226 (634)
                      |||+|+..|+.+++++|++.|++++.+|..|.||||+|+..+..+++++|.+.
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            66666666666666666666666666666666666666665555555555443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=9e-23  Score=203.62  Aligned_cols=139  Identities=26%  Similarity=0.241  Sum_probs=89.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccc-cCCChHHHHHHHhC
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD-MYGYQTTHVAAQYG  148 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~t~L~~Aa~~g  148 (634)
                      .|.||||+|+..|+.+++++|++ |+++|.+|..|.||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            45666666666666666666666 66666666666666666666666666666666666666665 55666666666666


Q ss_pred             CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       149 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      +.+++++|++. |++++.+|..|.||||+|+..+.                 +..+.||||+|+..|+.+++++|++++
T Consensus       123 ~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          123 RPEVVEALVEL-GADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            66666666655 66666666666666666654211                 134567777777777777777777653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=9.6e-23  Score=193.93  Aligned_cols=140  Identities=26%  Similarity=0.292  Sum_probs=130.7

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD-HTGQTALHWSA  112 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~-~~g~tpLh~A~  112 (634)
                      +..+.+|||.|++.|+.+.++.|++  +.+++.+|..|.||||+|+..|+.+++++|+++|+++|.++ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            5678999999999999999999998  88999999999999999999999999999999999999998 88999999999


Q ss_pred             HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh
Q 006702          113 VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF  192 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  192 (634)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..++.                  ..+.++|++|+..|..+++++|.+
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            99999999999999999999999999999999975322                  346799999999999999999976


Q ss_pred             c
Q 006702          193 L  193 (634)
Q Consensus       193 ~  193 (634)
                      +
T Consensus       181 ~  181 (183)
T 3deo_A          181 Q  181 (183)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=9.6e-23  Score=203.43  Aligned_cols=143  Identities=24%  Similarity=0.262  Sum_probs=132.7

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCcHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD-HTGQTALHWSA  112 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~-~~g~tpLh~A~  112 (634)
                      +..+.|+||.|++.|+.++++.|++  +.+++.+|..|.||||+|+..|+.+++++|+++|+++|.++ ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3578999999999999999999998  88999999999999999999999999999999999999998 78999999999


Q ss_pred             HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh
Q 006702          113 VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF  192 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  192 (634)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..++                  ...+.|||++|+..|+.+++++|++
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence            9999999999999999999999999999999986322                  2567899999999999999999998


Q ss_pred             cCCC
Q 006702          193 LDAY  196 (634)
Q Consensus       193 ~ga~  196 (634)
                      .+.+
T Consensus       182 ~~~~  185 (244)
T 3ui2_A          182 QVFE  185 (244)
T ss_dssp             HHEE
T ss_pred             hccc
Confidence            6544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.3e-22  Score=207.11  Aligned_cols=142  Identities=21%  Similarity=0.207  Sum_probs=125.6

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCCCCCc------cccCCChHHHHHHHh---CCHHHHHHHHHccCCCCCCCCCCCC
Q 006702          102 HTGQTALHWSAVRGAIQVAELLLREGARVNA------ADMYGYQTTHVAAQY---GQTAFLYHIVSKWNADPDVPDNDGR  172 (634)
Q Consensus       102 ~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~------~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~  172 (634)
                      ....++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|++. |++++.+|..|.
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~  227 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGN  227 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCC
Confidence            3456889999999999999999999999988      689999999999997   899999999998 999999999999


Q ss_pred             hHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcH
Q 006702          173 SPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR  252 (634)
Q Consensus       173 t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~  252 (634)
                      ||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++        .|.||||+|++.|+.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999999843        588999999998875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=7.2e-23  Score=200.86  Aligned_cols=134  Identities=21%  Similarity=0.234  Sum_probs=83.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCCCccccCCChHHHHHHH
Q 006702           68 DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLRE-GARVNAADMYGYQTTHVAAQ  146 (634)
Q Consensus        68 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~L~~Aa~  146 (634)
                      +..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            44566777777777777777777777777777777777777777777777777777776 67776666666666666666


Q ss_pred             hCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCC
Q 006702          147 YGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDK  202 (634)
Q Consensus       147 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~  202 (634)
                      .|+.+++++|++. |++++.+|..|.||||+|+..+..++++.|++.|+..+..+.
T Consensus       150 ~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          150 KGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             HTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             cCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence            6666666666665 666666666666666666666666666666666665554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.8e-22  Score=206.50  Aligned_cols=143  Identities=20%  Similarity=0.179  Sum_probs=125.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC------CCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCccccCCC
Q 006702           68 DGLGYYALQWAALNNRTAAAQYIIEHGGDVNA------ADHTGQTALHWSAVR---GAIQVAELLLREGARVNAADMYGY  138 (634)
Q Consensus        68 d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~------~~~~g~tpLh~A~~~---g~~~iv~~Ll~~gad~~~~d~~g~  138 (634)
                      .....++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            34456899999999999999999999999998      688999999999997   899999999999999999999999


Q ss_pred             hHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCH
Q 006702          139 QTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL  217 (634)
Q Consensus       139 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~  217 (634)
                      ||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|++      .|.||||+|+..|+.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999987 999999999999999999999999999999999886      478999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=4.1e-22  Score=176.45  Aligned_cols=108  Identities=27%  Similarity=0.372  Sum_probs=58.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC
Q 006702           70 LGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ  149 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~  149 (634)
                      .|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~   85 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   85 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCChHHHHH
Q 006702          150 TAFLYHIVSKWNADPDVPDNDGRSPLHWA  178 (634)
Q Consensus       150 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  178 (634)
                      .+++++|++. |++++.+|..|.||||+|
T Consensus        86 ~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           86 VSCVKLLLSK-GADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHC
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCCHHHHh
Confidence            5555555544 455555555555555554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=1e-22  Score=199.85  Aligned_cols=129  Identities=22%  Similarity=0.202  Sum_probs=116.5

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHH
Q 006702          100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAA  179 (634)
Q Consensus       100 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  179 (634)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++..|++++.+|..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999998779999999999999999999


Q ss_pred             hcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 006702          180 YKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK  228 (634)
Q Consensus       180 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~  228 (634)
                      ..|+.+++++|++.|++++.+|..|.||||+|+..++.++++.|++.|+
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            9999999999999999999999999999999999999999999999984

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=8e-22  Score=174.57  Aligned_cols=115  Identities=22%  Similarity=0.280  Sum_probs=107.2

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV  113 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~  113 (634)
                      ...+.++||.|+..|+.+.++.|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            3467899999999999999999998 789999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCC
Q 006702          114 RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQ  149 (634)
Q Consensus       114 ~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~  149 (634)
                      .|+.+++++|+++|++++.+|..|.||||+|...+.
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHH
Confidence            999999999999999999999999999999954433

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2e-20  Score=197.43  Aligned_cols=121  Identities=29%  Similarity=0.347  Sum_probs=67.4

Q ss_pred             chHHHHHHHc-CCHHHHHHHHhcCCCCCCCC--CCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhC
Q 006702           72 YYALQWAALN-NRTAAAQYIIEHGGDVNAAD--HTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYG  148 (634)
Q Consensus        72 ~t~Lh~Aa~~-g~~~~v~~Ll~~gad~n~~~--~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g  148 (634)
                      .|+||+|+.. |+.+++++|+++|+++|..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  279 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG  279 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4555555555 55555555555555555555  45555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhc
Q 006702          149 QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL  193 (634)
Q Consensus       149 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  193 (634)
                      +.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+..
T Consensus       280 ~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          280 HTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            55555555544 555555555555555555555555555555543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=1.2e-19  Score=184.61  Aligned_cols=121  Identities=20%  Similarity=0.199  Sum_probs=66.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCCC------ccccCCChHHHHHHHh---CCHHHHHHHHHccCCCCCCCCCCCChHHH
Q 006702          106 TALHWSAVRGAIQVAELLLREGARVN------AADMYGYQTTHVAAQY---GQTAFLYHIVSKWNADPDVPDNDGRSPLH  176 (634)
Q Consensus       106 tpLh~A~~~g~~~iv~~Ll~~gad~~------~~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  176 (634)
                      ++|+.|+..|+.+.++.+++.|++++      ..|..|.||||+|+..   |+.+++++|++. |++++.+|..|.||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHH
Confidence            45555555555555555555555532      2245555555555555   455555555554 5555555555555555


Q ss_pred             HHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          177 WAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       177 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      +|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            555555555555555555555555555555555555555555555555554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2.9e-20  Score=196.15  Aligned_cols=149  Identities=19%  Similarity=0.220  Sum_probs=120.0

Q ss_pred             ccccchhhHHHHHHHc-CCHHHHHHHHhccCCCCcCCC--CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHH
Q 006702           32 VDEESLRNDVYTAAAY-GDLEKLQRLVECEGCSVSEPD--GLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTAL  108 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpL  108 (634)
                      .......++||.|+.. |++++++.|++ .|++++..+  ..|.||||+|+..|+.+++++|+++|+++|.+|..|.|||
T Consensus       194 l~~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          194 LGSLHPGALLFRASGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL  272 (368)
T ss_dssp             ---CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            3344567899999999 99999999998 899999988  8999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccC--CCCCCCCCCCChHHHHHHhc
Q 006702          109 HWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN--ADPDVPDNDGRSPLHWAAYK  181 (634)
Q Consensus       109 h~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~  181 (634)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+....  .+....+..+.|+++.+...
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987632  23334455667777766543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=1.2e-19  Score=184.67  Aligned_cols=125  Identities=17%  Similarity=0.219  Sum_probs=117.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCC------CCCCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCccccCCChHHH
Q 006702           72 YYALQWAALNNRTAAAQYIIEHGGDVN------AADHTGQTALHWSAVR---GAIQVAELLLREGARVNAADMYGYQTTH  142 (634)
Q Consensus        72 ~t~Lh~Aa~~g~~~~v~~Ll~~gad~n------~~~~~g~tpLh~A~~~---g~~~iv~~Ll~~gad~~~~d~~g~t~L~  142 (634)
                      .++|+.|+..|+.+.++.+++.|++++      ..+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            468999999999999999999999954      4578899999999999   8999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCC
Q 006702          143 VAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR  197 (634)
Q Consensus       143 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~  197 (634)
                      +|+..|+.+++++|++. |++++.+|.+|.||||+|+..|+.+++++|++.|++.
T Consensus       211 ~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999987 9999999999999999999999999999999998854

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.9e-19  Score=150.93  Aligned_cols=89  Identities=37%  Similarity=0.544  Sum_probs=53.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCH
Q 006702           71 GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQT  150 (634)
Q Consensus        71 g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~  150 (634)
                      |.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            55666666666666666666666666666666666666666666666666666666666655555555555555555555


Q ss_pred             HHHHHHHHc
Q 006702          151 AFLYHIVSK  159 (634)
Q Consensus       151 ~~v~~Ll~~  159 (634)
                      +++++|++.
T Consensus        82 ~~~~~Ll~~   90 (93)
T 1n0q_A           82 EVVKLLLEA   90 (93)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            555555544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=5.9e-19  Score=147.93  Aligned_cols=91  Identities=40%  Similarity=0.609  Sum_probs=45.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCC
Q 006702          104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGF  183 (634)
Q Consensus       104 g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  183 (634)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCC
Confidence            45555555555555555555555555555555444444444444444444444443 44444444444444444444444


Q ss_pred             HHHHHHHhhcCC
Q 006702          184 ADCIRLLLFLDA  195 (634)
Q Consensus       184 ~~~v~~Ll~~ga  195 (634)
                      .+++++|++.|+
T Consensus        81 ~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 LEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            444444444443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=1.3e-19  Score=158.04  Aligned_cols=63  Identities=37%  Similarity=0.515  Sum_probs=25.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCC
Q 006702           69 GLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN  131 (634)
Q Consensus        69 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~  131 (634)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   69 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN   69 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc
Confidence            334444444444444444444444444444444444444444444444444444444333333

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=3.1e-19  Score=155.76  Aligned_cols=107  Identities=28%  Similarity=0.373  Sum_probs=57.1

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHH
Q 006702          100 ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAA  179 (634)
Q Consensus       100 ~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  179 (634)
                      +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++. |++++.+|..|.||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHH
Confidence            445566666666666666666666666655555555555555555555555555555544 4555555555555555555


Q ss_pred             hcCCHHHHHHHhhcCCCCCCCCCCCCcH
Q 006702          180 YKGFADCIRLLLFLDAYRGRQDKEGCTP  207 (634)
Q Consensus       180 ~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp  207 (634)
                      ..|+.+++++|++.|++++.++..|.||
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            5555555555555555555544444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=4.3e-17  Score=141.17  Aligned_cols=89  Identities=30%  Similarity=0.414  Sum_probs=44.0

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV  113 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~  113 (634)
                      +..+.++||.|+..|+.++++.|++ .+++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            3344455555555555555555554 344444444455555555555555555555555555555555455555555555


Q ss_pred             hCCHHHHHHH
Q 006702          114 RGAIQVAELL  123 (634)
Q Consensus       114 ~g~~~iv~~L  123 (634)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            5555554443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=4.1e-16  Score=134.99  Aligned_cols=94  Identities=28%  Similarity=0.344  Sum_probs=86.3

Q ss_pred             CCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHH
Q 006702           63 SVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTH  142 (634)
Q Consensus        63 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~  142 (634)
                      .....|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHH
Q 006702          143 VAAQYGQTAFLYHI  156 (634)
Q Consensus       143 ~Aa~~g~~~~v~~L  156 (634)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	634
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-31
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-27
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-21
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-20
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-11
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 4e-31
 Identities = 60/215 (27%), Positives = 86/215 (40%), Gaps = 4/215 (1%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A+  G L  ++ L++  G S +  +      L  AA    T  A+Y++++   VNA    
Sbjct: 7   ASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 65

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
            QT LH +A  G   + +LLL   A  N        T    A           + +  A 
Sbjct: 66  DQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEAS 124

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
                  G +PLH AA  G      LLL  DA+     K G TPLH A    NL+   +L
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 224 VQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           +  G           G TP  +A+ +N  +VA  L
Sbjct: 185 LPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 3e-25
 Identities = 63/287 (21%), Positives = 107/287 (37%), Gaps = 36/287 (12%)

Query: 59  CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
            +  S +     G+  L  AA   +   A+ ++E     NAA   G T LH +     + 
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 119 VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWA 178
           + +LLL  G   ++    GY   H+AA+  Q      ++       +     G +PLH A
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLA 238

Query: 179 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM----- 233
           A +G A+ + LLL   A     +K G TPLH  A  G++    VL++ G   D       
Sbjct: 239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 298

Query: 234 --------------------------VTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDK 267
                                          G +P   A+ + H  +   L       ++
Sbjct: 299 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 358

Query: 268 R-CDGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNLPKLTA 313
              DG +P+    +LG         +L +VT   S ++ S+  +++ 
Sbjct: 359 VSSDGTTPLAIAKRLGYIS---VTDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 9e-25
 Identities = 57/288 (19%), Positives = 101/288 (35%), Gaps = 40/288 (13%)

Query: 16  QNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYAL 75
                              +     ++ AA YG +   + L+E      +     G   L
Sbjct: 111 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPL 169

Query: 76  QWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADM 135
             A  +N     + ++  GG  ++    G T LH +A +  ++VA  LL+ G   NA  +
Sbjct: 170 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 229

Query: 136 YGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA 195
            G    H+AAQ G    +  ++SK   + ++ +  G +PLH  A +G      +L+    
Sbjct: 230 QGVTPLHLAAQEGHAEMVALLLSKQA-NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

Query: 196 YRGRQDKEGCTPLH---------------------------------WAAIRGNLEACTV 222
                 + G TPLH                                  AA +G+ +  T+
Sbjct: 289 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 348

Query: 223 LVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCD 270
           L++ G         + G TP  +A    +  V   L   + + D+   
Sbjct: 349 LLKNGA--SPNEVSSDGTTPLAIAKRLGYISVTDVL---KVVTDETSF 391

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 4e-24
 Identities = 55/231 (23%), Positives = 92/231 (39%), Gaps = 5/231 (2%)

Query: 14  SSQNHHNHDQSSPSNGVVVDEESL--RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLG 71
              N+ +  +     G      +      ++ AA    +E  + L++    S +     G
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQG 231

Query: 72  YYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
              L  AA          ++    + N  + +G T LH  A  G + VA++L++ G  V+
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

Query: 132 AADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
           A    GY   HVA+ YG    +  ++     D +     G SPLH AA +G  D + LLL
Sbjct: 292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

Query: 192 FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE-DLMVTDNTGLT 241
              A       +G TPL  A   G +    VL     +   ++V+D   ++
Sbjct: 351 KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 7e-20
 Identities = 49/237 (20%), Positives = 86/237 (36%), Gaps = 37/237 (15%)

Query: 106 TALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD 165
           T LH ++  G + + + LL+ GA  N +++      H+AA+ G T    +++    A  +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVN 60

Query: 166 VPDNDGRSPLHWAAYKGFADCIRLLL---------------------------------F 192
               D ++PLH AA  G  + ++LLL                                  
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 193 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 252
            +A +    K+G TPLH AA  G +    +L++             GLTP  +A   N+ 
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNL 178

Query: 253 QVAFFLGNARRLLDKRC-DGNSPIGKISKLGLAPALWCVILLMLVTYMHSVIMASNL 308
            +   L            +G +P+   +K         ++         SV   + L
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL 235

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 7e-27
 Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 3/218 (1%)

Query: 41  VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           V   A  G LE+L+  +  +    +  D     AL WA     T   +++++ G  VN  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
           D  G + LH +A  G  ++ + LL +GA+VNA +  G    H AA   +      ++   
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG- 125

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
            A+PD  D+   + +H AA KG    I +LL+  A    QD EG TPLH A     +E  
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 185

Query: 221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            +LV  G    + + +    TP Q+A       +   +
Sbjct: 186 KLLVSQGA--SIYIENKEEKTPLQVAKGGLGLILKRMV 221

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 1e-22
 Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 15/201 (7%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           +  AA     KL +L   +G  V+E D  G+ A   AA+  +  A +++ + G +VN   
Sbjct: 76  FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135

Query: 102 HT----------GQTALHWSAVRGAIQVAELLLRE-GARVNAADMYGYQTTHVAAQYGQT 150
            T          G TAL  +A +G ++V ++LL E GA VNA D  G      A      
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195

Query: 151 AFLYHIVS---KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-FLDAYRGRQDKEGCT 206
           + +  I        AD +V    G++PL  A  K     ++ LL          D +G T
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 207 PLHWAAIRGNLEACTVLVQAG 227
            L  A      +   +L + G
Sbjct: 256 ALLLAVELKLKKIAELLCKRG 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 5e-18
 Identities = 57/265 (21%), Positives = 101/265 (38%), Gaps = 50/265 (18%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDG-LGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
             A    D++ +Q+L+E  G +V+  +   G+  L  A   +R    + ++ HG D    
Sbjct: 10  IKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK- 159
              G T    +A+ G++++ +L L +GA VN  D YG+     AA YG+   L  +  + 
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 160 --------WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF------------------- 192
                      D +     G + L  AA KG  + +++LL                    
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 193 -------------------LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 233
                                A    + + G TPL  A  + +L     L++     ++ 
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-EIN 247

Query: 234 VTDNTGLTPAQLASDKNHRQVAFFL 258
            TD+ G T   LA +   +++A  L
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 3e-16
 Identities = 54/211 (25%), Positives = 76/211 (36%), Gaps = 15/211 (7%)

Query: 73  YALQWAALNNRTAAAQYIIEHGGDVNAAD-HTGQTALHWSAVRGAIQVAELLLREGARVN 131
           + L  A  N      Q ++E G +VN  +   G T LH +       + ELLLR GA   
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 132 AADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                G     +AA  G    L   +SK   D +  D  G +    AA  G    ++ L 
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 192 FLDA----------YRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLT 241
              A           + R  K G T L  AA +G++E   +L+      D+   DN G  
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE-MGADVNACDNMGRN 184

Query: 242 PAQLASDKNHRQVAFFLGNARRLLDKRCDGN 272
               A   +       +     LLD   D N
Sbjct: 185 ALIHALLSSDDSDVEAIT--HLLLDHGADVN 213

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 2e-12
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 61  GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTALHWSAVRGAIQV 119
           G  V+     G   L  A         Q ++E    ++N  D  G+TAL  +      ++
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268

Query: 120 AELLLREGARVNAADM 135
           AELL + GA  +  D+
Sbjct: 269 AELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 7e-10
 Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 10/164 (6%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT-HVAAQYGQTAFLYHIVSKWNA 162
               L  +     + + + LL  GA VN  +  G  T  H A Q  +   +  ++     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
                 N        AA  G    ++L L   A     D  G T    AA+ G ++A   
Sbjct: 65  PVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 223 LVQAGKKED--------LMVTDNTGLTPAQLASDKNHRQVAFFL 258
           L + G   +               G T    A++K H +V   L
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 7e-07
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           A     L  +QRL+E E   +++ D  G  AL  A        A+ + + G   +  D
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.3 bits (225), Expect = 7e-21
 Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 21/198 (10%)

Query: 68  DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW-------SAVRGAIQVA 120
           D  G   L W          +++++HG +    D+ G++ L                 + 
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 121 ELLLREGARVN---------AADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDG 171
           + L       +              G      AA+Y     +  IV K N       N+ 
Sbjct: 164 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223

Query: 172 RSPLHWAAYKGFADCIRLLL---FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGK 228
            S  +    +     +  L     +      QD  G T L+ AA  GN+     L+  G 
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

Query: 229 KEDLMVTDNTGLTPAQLA 246
             D  + + +GL P    
Sbjct: 284 --DPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.4 bits (202), Expect = 8e-18
 Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 20/188 (10%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGY----YALQWAALNNRTAAAQYIIEHGGDVNA 99
             +  +LE ++ LV+  G +    D +G      A++     +       +      +  
Sbjct: 114 LTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 172

Query: 100 ADHTGQTALHWSAVRGA-------------IQVAELLLREGARVNAADMYGYQTTHVAAQ 146
            D   +T LH   +                I +  ++ ++   + +         +    
Sbjct: 173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 232

Query: 147 YGQTAFLYHIVSKW--NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEG 204
             + + L ++  KW      +  D++G + L+ AA  G    +  LL   A     +K G
Sbjct: 233 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 292

Query: 205 CTPLHWAA 212
             P+ + A
Sbjct: 293 LRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 31/255 (12%), Positives = 78/255 (30%), Gaps = 20/255 (7%)

Query: 24  SSPSNGVVVDEESLRND-VYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNN 82
           + PS  V  +E+ ++ +       + +++++   +  +  + +   G      Q  + ++
Sbjct: 24  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 83

Query: 83  RTAAAQY-IIEHGGDVNAA-DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQT 140
                         ++N   D  G T LHW      +++ + L++ G+     D  G   
Sbjct: 84  LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 143

Query: 141 THVAAQYGQTAFLYHI---VSKWNADPDVPDNDGRSPLHWAA----YKGFADCIR----- 188
              A +             +        + D+  R+ LH         G +   +     
Sbjct: 144 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 203

Query: 189 ----LLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL-VQAGKKEDLMVTDNTGLTPA 243
               ++   +        E  +  +             L ++      L   D+ G T  
Sbjct: 204 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 263

Query: 244 QLASDKNHRQVAFFL 258
            +A+   +  +   L
Sbjct: 264 NIAARLGNISIVDAL 278

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 28/225 (12%), Positives = 57/225 (25%), Gaps = 6/225 (2%)

Query: 72  YYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
            + L    L++     + +     + N      +  L         ++   L  + +  N
Sbjct: 7   THDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN 66

Query: 132 AADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP-DNDGRSPLHWAAYKGFADCIRLL 190
           +      Q     +       +         + ++P D  G +PLHW       + ++ L
Sbjct: 67  SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 126

Query: 191 LFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTD-----NTGLTPAQL 245
           +   + R   D  G + L  A    N                 +        T L    +
Sbjct: 127 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII 186

Query: 246 ASDKNHRQVAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCV 290
            S       A        +       N PI   +    +      
Sbjct: 187 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 29/223 (13%), Positives = 59/223 (26%), Gaps = 22/223 (9%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ-VAELLLREGARVNA 132
            LQ             +     + N+   +        +    +Q V +        +N 
Sbjct: 42  FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 101

Query: 133 A-DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI---- 187
             D +G    H          + H+V    ++    DN G S L  A             
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGN-----------LEACTVLVQAGKKEDLMVTD 236
            LL +L      +D    T LH   I              L+     +   +   +    
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 237 NTGLTPAQLASDKNHRQVAFFLGNARRLLD----KRCDGNSPI 275
           N   +     + +    +   L     + +    +  +G++ +
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 263

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 91.9 bits (227), Expect = 9e-21
 Identities = 33/248 (13%), Positives = 51/248 (20%), Gaps = 37/248 (14%)

Query: 42  YTAAAYGDLEKLQ--RLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA 99
           + AA  G    L    L+      V       Y A + AA N        + E       
Sbjct: 95  FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154

Query: 100 ADHT--GQTALHWSAVRGAIQVAELLLREGARVN---AADMYGYQTTHVAAQYGQT---- 150
           A        A   +A  G + V   L                 Y     A   G      
Sbjct: 155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 151 -----------------AFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
                             +    V+ + A       +       +   G  D +      
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV------ 268

Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM---VTDNTGLTPAQLASDKN 250
                 Q       L        L+    L+     + L              +LA    
Sbjct: 269 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 328

Query: 251 HRQVAFFL 258
           ++     L
Sbjct: 329 NQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 90.3 bits (223), Expect = 3e-20
 Identities = 36/226 (15%), Positives = 64/226 (28%), Gaps = 28/226 (12%)

Query: 27  SNGVVVDEESLRND--VYTAAAYGDLEKLQRLVECEG-CSVSEPDGLGYYALQWAALNNR 83
           ++  +V      N      AA  G L  L RL E      ++      Y+A + AA N  
Sbjct: 114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 173

Query: 84  TAAAQYIIEHGGDVN---AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQT 140
                 + E                     +  RG   V   LL     +  A+++ ++ 
Sbjct: 174 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEY 233

Query: 141 TH---------VAAQYGQTAFLYHIVSKWNADPDVPDND-------GRSPLHWAAYKGFA 184
                         +  +    + + +  +   D+               L     +   
Sbjct: 234 GEKYVNPFIARHVNRLKEMHDAFKLSNP-DGVFDLVTKSECLQGFYMLRNLIRRNDEVLL 292

Query: 185 DCIRLLLFLDAYR-----GRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
           D IR LL +   +          +    L  A   GN  AC +L+ 
Sbjct: 293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.2 bits (168), Expect = 3e-13
 Identities = 28/224 (12%), Positives = 50/224 (22%), Gaps = 29/224 (12%)

Query: 75  LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           + W    N      +I  +   +    +     +     +   QV +LL    A  N   
Sbjct: 19  IPWILWENLFQ--HFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNA 76

Query: 135 MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL- 193
              +   H                                   AA  G +  +  L  L 
Sbjct: 77  KQLWSDAHKK-----------------------GIKSEVICFVAAITGCSSALDTLCLLL 113

Query: 194 --DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH 251
             D        E       AA  G+L     L +    E + +         +LA++  H
Sbjct: 114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 173

Query: 252 RQ-VAFFLGNARRLLDKRCDGNSPIGKISKLGLAPALWCVILLM 294
              +      A           +                +  L+
Sbjct: 174 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 25/204 (12%), Positives = 40/204 (19%), Gaps = 26/204 (12%)

Query: 14  SSQNHHNHDQSSPSNGVVVDEESLRNDVYTA----AAYGDLEKLQRLVE--CEGCSVSEP 67
           +   H +                ++ + Y A    A  G L  L RL E      +    
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193

Query: 68  DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAE------ 121
               Y     A          ++++    +  A+                +         
Sbjct: 194 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 253

Query: 122 ---LLLREGARVNAAD-------MYGYQTTHVAAQYGQTA----FLYHIVSKWNADPDVP 167
               L       +           Y  +                 L     K  A     
Sbjct: 254 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 313

Query: 168 DNDGRSPLHWAAYKGFADCIRLLL 191
             D    L  A   G      LLL
Sbjct: 314 PGDANELLRLALRLGNQGACALLL 337

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 88.6 bits (218), Expect = 6e-20
 Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 29/235 (12%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A + GD E++ RL+E  G  ++  +  G  AL  A +++     ++++E+G ++N  D+ 
Sbjct: 47  ACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G   LH +A  G + +AE L+ +GA V A +  G     +A +      L + V++   D
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165

Query: 164 --------------------------PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR 197
                                            G + LH AA KG+ + ++LL+      
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHR 252
             +D +G TPLH AA  G  EAC +LV+     D+   +  G T   +A +    
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENL--CDMEAVNKVGQTAFDVADEDILG 278

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 59  CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ 118
            +G  V   +  G   L  A         Q  +   G    A    +  +          
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML------RD 180

Query: 119 VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWA 178
             + L             G    HVAA  G T  L  ++ +   D ++ D DG +PLH A
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTPLHAA 239

Query: 179 AYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 233
           A+ G  +  R+L+         +K G T    A      +    L +  KK++L+
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 1/120 (0%)

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW 160
                     +   G  +    LL  GA +N A++ G    H A        +   + + 
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNV-DMVKFLVEN 95

Query: 161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEAC 220
            A+ + PDN+G  PLH AA  G+ D    L+   A+ G  + EG TPL  A      E  
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 197 RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAF 256
           + +   +       A   G+ E    L++ G   D+   +  GLT    A   ++  +  
Sbjct: 33  KTKVKFDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQACIDDNVDMVK 90

Query: 257 F 257
           F
Sbjct: 91  F 91

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 75.5 bits (184), Expect = 1e-15
 Identities = 55/253 (21%), Positives = 89/253 (35%), Gaps = 23/253 (9%)

Query: 31  VVDEESLRNDVYTAAAYGDLEKLQRLVECE-------GCSVSEPDGLGYYALQWAALNNR 83
           ++D    R  ++  A+    EK + L+  E       G  V+  D      L  A L  R
Sbjct: 27  IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 86

Query: 84  TAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARV---NAADMYGYQT 140
                Y+++ G D    + + ++ALH +A      +   +L            D  G   
Sbjct: 87  RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 146

Query: 141 THVAAQYG----------QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLL 190
             + A                    +     A  D     GR+ LH+AA       ++ L
Sbjct: 147 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 206

Query: 191 -LFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDK 249
                + + +QD++G TP+  AA  G +E    L+Q G    +   D T  T  QLA   
Sbjct: 207 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQAN 264

Query: 250 NHRQVAFFLGNAR 262
           NH  +       R
Sbjct: 265 NHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 173 SPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKE-- 230
           SP+        +  I   +  ++      +   T LHW A   + E    L+    KE  
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 231 ----DLMVTDNTGLTP 242
               D+   D    TP
Sbjct: 62  AAGADVNAMDCDENTP 77

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 1e-14
 Identities = 39/237 (16%), Positives = 61/237 (25%), Gaps = 49/237 (20%)

Query: 44  AAAYGDLEKLQRLVE--CEGCSVSEPDGLGYYALQWAALNNR------------------ 83
           A  +     L  L+        +   + LG  AL  AA+                     
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 84  ---------------TAAAQYIIEHGGDVN--------------AADHTGQTALHWSAVR 114
                             A  +++                      D +   A   S   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSP 174
              +          ++ A +  G+   HVA  +     +  +              GR+P
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 175 LHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKED 231
           LH A     A  + LLL   A    +   G TPL  A +R N     +L   G  E 
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (155), Expect = 5e-12
 Identities = 47/238 (19%), Positives = 72/238 (30%), Gaps = 52/238 (21%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGD---VNAADHTGQTALHWSAVRG------------ 115
           G  AL  A ++       +++        ++  +  GQTALH +A+ G            
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 116 ---------------------AIQVAELLLREGARVNAADMYGYQT-------------T 141
                                A   A +LL+            Y T              
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 142 HVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL-FLDAYRGRQ 200
            V +Q             W    +  + DG +PLH A     A+ +RLL          +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 201 DKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
              G TPLH A          +L++AG   D       G TP   A  + +  +A  L
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGA--DPTARMYGGRTPLGSALLRPNPILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 5e-10
 Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 4/137 (2%)

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGA---RVNAADMYGYQTTHVAAQYGQTAFLYHIV 157
              G TALH + +       + LL   A    ++  +  G    H+AA  G+ + +  + 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 158 SKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNL 217
           +              +  H A       C  +LL       R   +              
Sbjct: 66  AAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 218 EACTVLVQAGKKEDLMV 234
            A   +      E+   
Sbjct: 125 HAPAAVDSQPNPENEEE 141

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 8e-09
 Identities = 26/94 (27%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 168 DNDGRSPLHWAAYKGFADCIRLLLFLDA---YRGRQDKEGCTPLHWAAIRGNLEACTVLV 224
             DG + LH A        +  LL   A   Y   Q+  G T LH AAI G       L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 225 QAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
            AG    +        T   LA        A  L
Sbjct: 66  AAGAGVLVAERGGH--TALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAG-KKEDLMVTDNTGLTPAQLASDKNH 251
           G   ++G T LH A I  +      L+      E L + ++ G T   LA+    
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE 57

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 70.2 bits (170), Expect = 3e-14
 Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 36/205 (17%)

Query: 88  QYIIEHGGDVNA-ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQ 146
             ++  G ++NA  D TG+T+LH +A       A+ LL  GA  N+ D  G    H A  
Sbjct: 6   SDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVA 65

Query: 147 YGQTAFLYHIVSKWN---------------------------------ADPDVPDNDGRS 173
                    ++                                     AD +  DN G++
Sbjct: 66  ADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKT 125

Query: 174 PLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLM 233
            LHWAA     + + +LL   A R  QD +  TPL  AA  G+ EA   L+      +  
Sbjct: 126 ALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA--NRE 183

Query: 234 VTDNTGLTPAQLASDKNHRQVAFFL 258
           +TD+    P  +AS++ H  +   L
Sbjct: 184 ITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.5 bits (150), Expect = 1e-11
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 1/180 (0%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AA +   +  +RL++    + S+ +          A +        +     ++NA  H 
Sbjct: 30  AARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD 89

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
           G T L  +A      + E L+   A +NAAD  G    H AA    T  +  ++     +
Sbjct: 90  GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA-N 148

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
            D  D+   +PL  AA +G  +  + LL   A R   D     P   A+ R + +   +L
Sbjct: 149 RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 6/215 (2%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           A    +  K+Q L+  +   + + D  G   L W+          +++    +VN  D+ 
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 104 GQTALHWSAV----RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK 159
             +      +         V  L  R              T    A   +   +   + +
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 126

Query: 160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR-GRQDKEGCTPLHWAAIRGNLE 218
             A   + D   + PLH AA  G    I LL  L       QDK+G TPL  A   G+ +
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 219 ACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQ 253
           A  +LV+     +  + DN G     +A ++  ++
Sbjct: 187 AAVLLVEKYGA-EYDLVDNKGAKAEDVALNEQVKK 220

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (152), Expect = 7e-12
 Identities = 46/191 (24%), Positives = 68/191 (35%), Gaps = 6/191 (3%)

Query: 73  YALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVN 131
           Y L  A + N     Q ++      +   D  G+  LHWS    A ++   LL +   VN
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 132 AADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDG----RSPLHWAAYKGFADCI 187
             D                  L  + S ++       N       + LH A  K + +  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS 247
           + L+   A    +DK    PLH AA  G+L+   +L   GK   +   D  G TP   A 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS-AVNWQDKQGWTPLFHAL 180

Query: 248 DKNHRQVAFFL 258
            + H   A  L
Sbjct: 181 AEGHGDAAVLL 191

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 59  CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGD-VNAADHTGQTALHWSAVRGAI 117
             G SV   D      L  AA        + +   G   VN  D  G T L  +   G  
Sbjct: 126 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 185

Query: 118 QVAELLL-REGARVNAADMYGYQTTHVAAQYGQTAFL 153
             A LL+ + GA  +  D  G +   VA       F 
Sbjct: 186 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (161), Expect = 4e-13
 Identities = 51/218 (23%), Positives = 77/218 (35%), Gaps = 9/218 (4%)

Query: 44  AAAYGDLEKLQRLVECE---GCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAA 100
           A   G+L  + RLV      G  +   + L    L  A +    +  + ++  G    A 
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 69

Query: 101 DHTGQTALHWSAVRGAIQVAELLLREGARVNAADMY----GYQTTHVAAQYGQTAFLYHI 156
           D  GQTA H +    +      LL   A            G    HVA        +  +
Sbjct: 70  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129

Query: 157 VSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGN 216
           + +      V    GRSPL  A        ++LLL   A    Q   G + LH A+ RG 
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189

Query: 217 LEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQV 254
           L     LV++G   D  + +    TP  +A  +    +
Sbjct: 190 LPLVRTLVRSG--ADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 71  GYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGA-IQVAELLLREGAR 129
           G  AL  A         Q ++E G D++A D     +    AV    + + +LLL+ GA 
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 169

Query: 130 VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIR 188
           VNA    G    H A+  G    +  +V    AD  + +    +PL  A  +   D +R
Sbjct: 170 VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 8e-07
 Identities = 27/100 (27%), Positives = 45/100 (45%)

Query: 54  QRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAV 113
           Q L+E      +     G   L  A  NN  +  Q +++HG +VNA  ++G +ALH ++ 
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 186

Query: 114 RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL 153
           RG + +   L+R GA  +  + +      VA        L
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 170 DGRSPLHWAAYKGFADCIRLLLFLDAYRG----RQDKEGCTPLHWA 211
           DG +PLH A  +G    +  L+ L    G      +    TPLH A
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 9/187 (4%)

Query: 104 GQTALHWSAVRGAIQVAELLLRE----GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSK 159
           G T LH + V+G +     L+      G  ++  +       H+A      +    ++  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV-VRLLVT 61

Query: 160 WNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA----YRGRQDKEGCTPLHWAAIRG 215
             A P   D  G++  H A       C+R LL   A        ++ +G T LH A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 216 NLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARRLLDKRCDGNSPI 275
             E   +L++ G   D +   +          + +   V   L +   +  +   G+S +
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 276 GKISKLG 282
              S  G
Sbjct: 182 HSASGRG 188

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 203 EGCTPLHWAAIRGNLEACTVLVQAGKKE--DLMVTDNTGLTPAQLASDKNHRQ 253
           +G TPLH A ++GNL A   LV   ++   +L + +N   TP  LA       
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 54

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 12/201 (5%)

Query: 71  GYYALQWAALNNRTAAAQYIIE----HGGDVNAADHTGQTALHWSAVRGAIQVAELLLRE 126
           G   L  A ++   A    +I         +N  ++  QT LH + +    ++AE LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 127 GARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV-----PDNDGRSPLHWAAYK 181
           G      D  G    H+A + G  A +  +                + +G + LH A+  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 182 GFADCIRLLLFLDAY-RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL 240
           G+   + LL+ L A    ++   G T LH A    N +  ++L++ G   D+      G 
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA--DVNRVTYQGY 179

Query: 241 TPAQLASDKNHRQVAFFLGNA 261
           +P QL   +   ++   LG  
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 16/87 (18%), Positives = 34/87 (39%)

Query: 42  YTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAAD 101
           + A+ +G L  ++ LV       ++    G  AL  A           +++ G DVN   
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 175

Query: 102 HTGQTALHWSAVRGAIQVAELLLREGA 128
           + G +    +  R + ++ + L +   
Sbjct: 176 YQGYSPYQLTWGRPSTRIQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 170 DGRSPLHWAAYKGFADC----IRLLLFLDAYRGRQDKEGCTPLHWA 211
           DG S LH A            IR +    A+   Q+    TPLH A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 203 EGCTPLHWAAIRGNLEACTVLVQA--GKKEDLMVTDNTGLTPAQLASDKNHRQ 253
           +G + LH A I         +++   G    L   +N   TP  LA   N  +
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPE 53

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-11
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 3/153 (1%)

Query: 39  NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           + +  AAA GD+++++RL+  E       +  G  ALQ       TA A  +++ G   N
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
             D +G + +H +A  G +   ++L+  GA VN  D  G    H+     +         
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL--AVQEGHTAVVSFL 120

Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
              +D    D  G +PL  A  +G  D + +L 
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 3e-09
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 4/153 (2%)

Query: 74  ALQWAALNNRTAAAQYIIEHGG-DVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNA 132
            L  AA        + ++       +A +  G+TAL            EL   +      
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL--LKQGASPN 62

Query: 133 ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF 192
                  +    A          ++ +  AD +VPD  G  P+H A  +G    +  L  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122

Query: 193 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
            ++   R+D  G TPL  A  RG  +   +L  
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-07
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 6/156 (3%)

Query: 104 GQTALHWSAVRGAIQ-VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNA 162
               L  +A RG +Q V  LL RE    +A + +G   T +      +  +   + K  A
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK--TALQVMMFGSTAIALELLKQGA 59

Query: 163 DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTV 222
            P+V D  G SP+H AA  GF D +++L+   A     D  G  P+H A   G+     V
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH---TAV 116

Query: 223 LVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
           +     + DL   D  GLTP +LA  +  + +   L
Sbjct: 117 VSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (136), Expect = 2e-10
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 2/150 (1%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
            L  AA   +    + ++ +G         G + LH +A  G     E+L         A
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVL-LRAGVSRDA 62

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
                +T    A     A +  ++ K  AD +  D    + LHWA      + + LL+  
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
            A    Q K   T    +   GN +   +L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 44  AAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHT 103
           AA  G  ++++ L+   G   +     G   L  AA     +  + ++  G   +A    
Sbjct: 9   AARAGQDDEVRILMAN-GAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
            +T LH +A  G   + E+LL+ GA VNA DM      H A ++     +  ++ K+ AD
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ-EVVELLIKYGAD 125

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLL 190
                   ++    +   G  D   +L
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 5e-10
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 1/154 (0%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
            L  AA          ++++  +VNA +  G+TAL    +        LL   GA  +  
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLL-LRGANPDLK 62

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL 193
           D  G+   H AA+ G    L  ++          +         A          L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 194 DAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG 227
            +  G ++ +G T    A + G  E  +++   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 6e-09
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 39  NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVN 98
           N++ +AAA GDLE+L  L++    +V+  +G G  ALQ          A+ ++  G + +
Sbjct: 3   NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD 60

Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS 158
             D TG   +H +A  G +   + LL   A VN  D  G    H+AA+ G    +  +V 
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 120

Query: 159 KWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
              ++    ++ G +    A   G  + + L+ 
Sbjct: 121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 6e-08
 Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 106 TALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD 165
             L  +A RG ++    LL+    VNA + +G     V         +   +    A+PD
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV--MKLGNPEIARRLLLRGANPD 60

Query: 166 VPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ 225
           + D  G + +H AA  GF D ++ LL   A    +D EG  PLH AA  G+L      + 
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF-LV 119

Query: 226 AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL 258
                ++   ++ G T   LA      +V   +
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 7e-09
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 8/140 (5%)

Query: 99  AADHTGQTALHWSAVRGAIQVAELLLREGARVNA------ADMYGYQTTHVAAQYGQTAF 152
           A       +L  +     I        +G  +                 H+A +      
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 153 LYHI--VSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHW 210
           L+ +  + + + + D     G + LH+      A+C++LLL   A     ++ G TPL  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 211 AAIRGNLEACTVLVQAGKKE 230
           A    +     +L QA    
Sbjct: 121 AKRLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 8   VEEVGQSSQNHHNHDQSSPSNGVVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEP 67
           +  + Q+  +  +  +  P       +E+  +    +     L  +  LV+    ++ + 
Sbjct: 19  IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQ 77

Query: 68  DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREG 127
            G G  AL +  L +     + ++     +  A+ +G+T L  +         ELL +  
Sbjct: 78  TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 137

Query: 128 AR 129
           + 
Sbjct: 138 SG 139

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-07
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 1/123 (0%)

Query: 104 GQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNAD 163
               L  +A RG ++    LL  GA  NA + YG +   V            ++     +
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 164 PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL 223
              P    R     A        + L     A    +D  G  P+  A   G+ +    L
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 224 VQA 226
             A
Sbjct: 122 RAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-05
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
            L  AA   R    + ++E G + NA +  G+  +    +  A     LLL       A 
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
                +  H AA+ G       ++ +  A  DV D  GR P+  A   G  D  R L 
Sbjct: 66  PATLTRPVHDAAREGFLDT-LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 8e-07
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 106 TALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD 165
             L  S++ G   + + ++ E    +  +  G    H A   G T      + ++  + +
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI-VKFLVQFGVNVN 61

Query: 166 VPDNDGRSPLHWAAYKGFADCIRLLLFLDA---YRGRQDKEGCTPLHWAAIRGNLEACTV 222
             D+DG +PLH AA        + L+   A        D +           G  +    
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 223 LVQAGKK 229
           L    +K
Sbjct: 122 LYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 75  LQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD 134
           L  ++L       Q II    D +  +  G TALH +   G  ++ + L++ G  VNAAD
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 135 MYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDN-DGRSP--LHWAAYKGFADCIRLLL 191
             G+   H AA          +V    A        D ++         +G+  C + L 
Sbjct: 65  SDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 1/107 (0%)

Query: 106 TALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPD 165
               W+   G +   +  +          + G +     A       +   +    AD +
Sbjct: 4   KEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 166 VPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA 212
            PD    +PL  A Y+G   C++LLL   A +  +  +G T L    
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 74  ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAA 133
              WA  N      +  +  G DVN     G+  LH++A  G +++ E LL +GA +NA 
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64

Query: 134 DMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL 191
           D +       A   G  +    ++    AD  V   DG + L     +     I+ LL
Sbjct: 65  DKHHITPLLSAVYEGHVSC-VKLLLSKGADKTVKGPDGLTALEATDNQ----AIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	634
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-37  Score=298.38  Aligned_cols=219  Identities=28%  Similarity=0.390  Sum_probs=210.0

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI  117 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~  117 (634)
                      .+.|+.+|..|+++.++.+|+..+.+++.+|..|+||||+||..|+.+++++|++.+.+....+..+.++++.|+..|+.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            56789999999999999999988899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCC
Q 006702          118 QVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYR  197 (634)
Q Consensus       118 ~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~  197 (634)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..++.+++++|++.+.++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i  162 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST  162 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee
Confidence            999999999999999999999999999999999999999987 9999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHH
Q 006702          198 GRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN  260 (634)
Q Consensus       198 ~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~  260 (634)
                      +.+|..|+||||+|+..|+.++|++|+++|  +|++.+|.+|+||||+| ..++.+++++|.+
T Consensus       163 ~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G--ad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         163 NIQDTEGNTPLHLACDEERVEEAKLLVSQG--ASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeccCCCCceeccccccCcHHHHHHHHHCC--CCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            999999999999999999999999999999  67889999999999998 5799999988753

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-34  Score=285.18  Aligned_cols=227  Identities=23%  Similarity=0.193  Sum_probs=184.6

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCC---CcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCS---VSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHW  110 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~---~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~  110 (634)
                      ++.+.||||.||+.|+.+++++|++ .+++   ++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~-~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            4678999999999999999999998 5655   67788999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCCCCCcccc----------CCCh---HHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHH
Q 006702          111 SAVRGAIQVAELLLREGARVNAADM----------YGYQ---TTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHW  177 (634)
Q Consensus       111 A~~~g~~~iv~~Ll~~gad~~~~d~----------~g~t---~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  177 (634)
                      |+..|+.+++++|++.+........          .+.+   .+..............+....+.+++.+|.+|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            9999999999999987654322111          1111   11111111122223333333467788999999999999


Q ss_pred             HHhcCCHHHHHHHhhcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHH
Q 006702          178 AAYKGFADCIRLLLFLDAYRGR-QDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAF  256 (634)
Q Consensus       178 A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~  256 (634)
                      |+..++.+++++|++.+++.+. ++..|.||||+|+..|+.+++++|+++|  ++++.+|..|+||||+|+..++.++++
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g--adin~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG--ADPTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             cccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            9999999999999999998876 4678999999999999999999999999  678899999999999999999999999


Q ss_pred             HHHHHHH
Q 006702          257 FLGNARR  263 (634)
Q Consensus       257 ~L~~~~~  263 (634)
                      +|.+.++
T Consensus       243 ~Ll~~Ga  249 (255)
T d1oy3d_         243 LLRAHGA  249 (255)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9877554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-33  Score=295.88  Aligned_cols=242  Identities=26%  Similarity=0.389  Sum_probs=180.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHH
Q 006702           39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ  118 (634)
Q Consensus        39 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~  118 (634)
                      ||||.||..|++++|++|++ .|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~-~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             ChHHHHHHCcCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            78999999999999999998 68889988888999999999999999999999999999988888889988888777655


Q ss_pred             H------------------------------------------------------------------HHHHHhcCCCCCc
Q 006702          119 V------------------------------------------------------------------AELLLREGARVNA  132 (634)
Q Consensus       119 i------------------------------------------------------------------v~~Ll~~gad~~~  132 (634)
                      +                                                                  ++.|+++|++++.
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            4                                                                  4455566777777


Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCC---------------------------------------------
Q 006702          133 ADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVP---------------------------------------------  167 (634)
Q Consensus       133 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~---------------------------------------------  167 (634)
                      .+..|.+|||+|+..|+.+++++|+.+ |++++..                                             
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH
Confidence            777888888888888888888887765 5544332                                             


Q ss_pred             ---------------------CCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 006702          168 ---------------------DNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA  226 (634)
Q Consensus       168 ---------------------d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  226 (634)
                                           |..|.|||+.|+..++.+++++|++.|++++..+..+.||||.|+..++.++++++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             HhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccc
Confidence                                 33444555556666666677777777777766666667777777777777777777776


Q ss_pred             CCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHHH-HhcccCCCCCCcccccccCcc
Q 006702          227 GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNARR-LLDKRCDGNSPIGKISKLGLA  284 (634)
Q Consensus       227 g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~~-l~~~~~~~~~~~~~~~~~g~~  284 (634)
                      |  ++++.+|.+|.||||+|++.|+.+++++|.+.+. +..++.+|.+|++.+.+.|..
T Consensus       320 g--~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         320 Q--ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             T--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             c--ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            6  5677888899999999999999999988765432 223344455555555444443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.4e-33  Score=286.23  Aligned_cols=220  Identities=27%  Similarity=0.405  Sum_probs=202.7

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHh
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVR  114 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~  114 (634)
                      -.+.++|+.||..|+++.|+.||+ .|+++|..|..|.||||+|+.+|+.+++++|+++|++.+..+..+.+||+.|+..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~-~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            346799999999999999999998 8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccC--------------------------CCCCCCC
Q 006702          115 GAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWN--------------------------ADPDVPD  168 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~--------------------------~~~~~~d  168 (634)
                      ++.++++.|+++|+..+..|..+.+++++|+..+..+.+..++...+                          .+....+
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            99999999999999999999999999999999988888888776433                          3345678


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHh
Q 006702          169 NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD  248 (634)
Q Consensus       169 ~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~  248 (634)
                      ..|.||||.|+..|+.++++.|++.|++++.+|..|+||||+|+..|+.++|++|+++|  +|++.+|..|+||||+|++
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G--adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL--CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999  5788999999999999975


Q ss_pred             cCcHHHHHHHHHH
Q 006702          249 KNHRQVAFFLGNA  261 (634)
Q Consensus       249 ~~~~~i~~~L~~~  261 (634)
                          +++++|.+.
T Consensus       275 ----~~~~~L~~~  283 (291)
T d1s70b_         275 ----DILGYLEEL  283 (291)
T ss_dssp             ----GGGHHHHHH
T ss_pred             ----HHHHHHHHH
Confidence                566666543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-33  Score=271.81  Aligned_cols=218  Identities=25%  Similarity=0.313  Sum_probs=200.2

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC---CCCCCCcHHHHHHHh
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA---ADHTGQTALHWSAVR  114 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~---~~~~g~tpLh~A~~~  114 (634)
                      .+|||.||..|+.+.++.||+..+.+++.+|.+|.||||+|+..|+.+++++|+++|++++.   .+..|.+|+|+|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            37999999999999999999988889999999999999999999999999999999999864   566899999999999


Q ss_pred             CCHHHHHHHHhcCCCC--CccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh
Q 006702          115 GAIQVAELLLREGARV--NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF  192 (634)
Q Consensus       115 g~~~iv~~Ll~~gad~--~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  192 (634)
                      +..++++.++..+.+.  ...+..+.++++.++..++.+++.+|+.. +.+.+.+|..|.||||+|+..|+.+++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhcccccccccccc
Confidence            9999999999998754  45678899999999999999999999987 89999999999999999999999999999999


Q ss_pred             cC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH
Q 006702          193 LD-AYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ-AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA  261 (634)
Q Consensus       193 ~g-a~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~  261 (634)
                      .+ .+++.+|.+|+||||+|+.+|+.++|++|++ .|  +|++.+|.+|+||||+|++   .+++++|.+.
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g--ad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~  225 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG--AEYDLVDNKGAKAEDVALN---EQVKKFFLNN  225 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--CCSCCCCTTSCCTGGGCSC---HHHHHHHHHH
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcC--CCCCCcCCCCCCHHHHHhh---HHHHHHHHHc
Confidence            87 6789999999999999999999999999997 48  6788999999999999985   4688887543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=8e-34  Score=285.34  Aligned_cols=226  Identities=24%  Similarity=0.310  Sum_probs=195.7

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHh-------ccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVE-------CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQ  105 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~-------~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~  105 (634)
                      +...++||||.||..|+.++++.|+.       ..|+++|.+|.+|.||||+|+..|+.+++++|+++|+|++.+|..|.
T Consensus        29 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~  108 (277)
T d2fo1e1          29 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSER  108 (277)
T ss_dssp             CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccc
Confidence            34568999999999999999988754       25899999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHhcC---CCCCccccCCChHHHHHHHhCCHH---HHHHHHHcc-------CCCCCCCCCCCC
Q 006702          106 TALHWSAVRGAIQVAELLLREG---ARVNAADMYGYQTTHVAAQYGQTA---FLYHIVSKW-------NADPDVPDNDGR  172 (634)
Q Consensus       106 tpLh~A~~~g~~~iv~~Ll~~g---ad~~~~d~~g~t~L~~Aa~~g~~~---~v~~Ll~~~-------~~~~~~~d~~g~  172 (634)
                      |||++|+..++.++++++...+   ..++..+..+.++.+.+...+..+   .+..+....       ....+..+..|.
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            9999999999999999988764   456778888999999998877543   333333331       122355678899


Q ss_pred             hHHHHHHhcCCHHHHHHHh-hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCc
Q 006702          173 SPLHWAAYKGFADCIRLLL-FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNH  251 (634)
Q Consensus       173 t~Lh~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~  251 (634)
                      ||||+++..++.+++++++ ..+.+.+.+|..|.||||+|+..|+.++|++|+++|  +|++.+|..|.||||+|++.|+
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g--adin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG--ASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCcCCCCCCHHHHHHHcCC
Confidence            9999999999999998755 678899999999999999999999999999999999  6788999999999999999999


Q ss_pred             HHHHHHHHH
Q 006702          252 RQVAFFLGN  260 (634)
Q Consensus       252 ~~i~~~L~~  260 (634)
                      .+++++|.+
T Consensus       267 ~~iv~lL~~  275 (277)
T d2fo1e1         267 HNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999853

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.2e-32  Score=263.97  Aligned_cols=191  Identities=27%  Similarity=0.367  Sum_probs=182.6

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      ..|+.++||||.||..|+.++++.+++ .+......+..+.++++.|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A  110 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA  110 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHhhhhcccccccc-cccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHH
Confidence            467789999999999999999999998 6777788888899999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHh
Q 006702          112 AVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLL  191 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  191 (634)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+.. +.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus       111 ~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~-~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL  189 (223)
T d1uoha_         111 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQDTEGNTPLHLACDEERVEEAKLLV  189 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc-cceeeeccCCCCceeccccccCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999998876 9999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 006702          192 FLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ  225 (634)
Q Consensus       192 ~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~  225 (634)
                      +.|++++.+|.+|+||||+|+ .|+.+++++|++
T Consensus       190 ~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         190 SQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             HCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            999999999999999999984 799999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.8e-30  Score=270.47  Aligned_cols=222  Identities=25%  Similarity=0.316  Sum_probs=186.1

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC--------------
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNA--------------   99 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~--------------   99 (634)
                      +..+.++++.|+..++.++++.|++ .+.+++..+..|.+|||+|+..|+.+++++|+++|++++.              
T Consensus       129 ~~~~~~~l~~a~~~~~~~~v~~ll~-~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~  207 (408)
T d1n11a_         129 TKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK  207 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhc
Confidence            3445556666666666666666665 4556666666666666666666666666666666655543              


Q ss_pred             -------------------CCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHcc
Q 006702          100 -------------------ADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW  160 (634)
Q Consensus       100 -------------------~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~  160 (634)
                                         .+..+.|||+.|+..++.++++.+++.+.+.+..+..|.||++.|+..++.+++++|+++ 
T Consensus       208 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-  286 (408)
T d1n11a_         208 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-  286 (408)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-
T ss_pred             cchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHC-
Confidence                               445567788888888888899999999999999999999999999999999999999987 


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCC
Q 006702          161 NADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGL  240 (634)
Q Consensus       161 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~  240 (634)
                      |++++..+..+.||||.|+..+..++++++++.|++++.+|.+|+||||+|++.|+.++|++|+++|  +|++.+|.+|+
T Consensus       287 g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G--Ad~n~~d~~G~  364 (408)
T d1n11a_         287 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG--ASPNEVSSDGT  364 (408)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCSSSC
T ss_pred             CCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999  57889999999


Q ss_pred             CHHHHHHhcCcHHHHHHHH
Q 006702          241 TPAQLASDKNHRQVAFFLG  259 (634)
Q Consensus       241 Tpl~~A~~~~~~~i~~~L~  259 (634)
                      ||||+|++.|+.+++++|.
T Consensus       365 t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         365 TPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999984

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.7e-30  Score=246.96  Aligned_cols=220  Identities=24%  Similarity=0.256  Sum_probs=200.8

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHh---ccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHH
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVE---CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWS  111 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A  111 (634)
                      |.++||||.||+.|+.++++.|++   +.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            468999999999999999999986   47899999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCC----CCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHH
Q 006702          112 AVRGAIQVAELLLREGAR----VNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCI  187 (634)
Q Consensus       112 ~~~g~~~iv~~Ll~~gad----~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  187 (634)
                      ...++.++++.+......    .+.......++|+.+...........|...........+..+.++|+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            999999999988775432    3455667889999999999999999988875555566778899999999999999999


Q ss_pred             HHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHH
Q 006702          188 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAF  256 (634)
Q Consensus       188 ~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~  256 (634)
                      +.+++.|.+.+.+|..|.||||+|+..|+.+++++|+++|  +|++.+|.+|.||||+|+++++.|+++
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G--ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG--ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999999999999999999999999  678899999999999999999988874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-29  Score=252.66  Aligned_cols=224  Identities=26%  Similarity=0.287  Sum_probs=193.1

Q ss_pred             chhhHHHHHHHcCCHHHHHHHHhccCCCCcCCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC--------------
Q 006702           36 SLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPD-GLGYYALQWAALNNRTAAAQYIIEHGGDVNAA--------------  100 (634)
Q Consensus        36 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~--------------  100 (634)
                      ...+.|+.|++.|+.++|+.|++ .|++++.++ ..|.||||+|+..|+.+++++|++.+.+.+..              
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~-~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHH-CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            46789999999999999999999 799998765 57999999999999999999999987765433              


Q ss_pred             -------------------CCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCcc----------ccCCChHHHHHHHhCCHH
Q 006702          101 -------------------DHTGQTALHWSAVRGAIQVAELLLREGARVNAA----------DMYGYQTTHVAAQYGQTA  151 (634)
Q Consensus       101 -------------------~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~----------d~~g~t~L~~Aa~~g~~~  151 (634)
                                         +..+.|++++|+..|+...++.+++...+++.+          +..|.||||+|+..|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                               334667777777777777777777776665443          356899999999999999


Q ss_pred             HHHHHHHccCCCCCCCCCCCChHHHHHHhcC----CHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-
Q 006702          152 FLYHIVSKWNADPDVPDNDGRSPLHWAAYKG----FADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA-  226 (634)
Q Consensus       152 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g----~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-  226 (634)
                      ++++|+++.|++++..+..|.++++.+...+    ..+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++ 
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            9999999889999999999999888765433    34799999999999999999999999999999999999999986 


Q ss_pred             CCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH
Q 006702          227 GKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR  262 (634)
Q Consensus       227 g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~  262 (634)
                      |  ++++.+|.+|.||||+|++.++.+++++|.+.+
T Consensus       243 g--~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         243 H--IEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             S--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             C--CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            5  788999999999999999999999999976543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=4.2e-30  Score=257.91  Aligned_cols=195  Identities=22%  Similarity=0.246  Sum_probs=173.7

Q ss_pred             CcccccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcC---CCCCCCCCCCCc
Q 006702           30 VVVDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHG---GDVNAADHTGQT  106 (634)
Q Consensus        30 ~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~g---ad~n~~~~~g~t  106 (634)
                      ++..+..++||||.|++.|+.++++.|++ .|++++.+|..|.|||++|+..++.++++.+...+   ..++..+..+.+
T Consensus        67 vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  145 (277)
T d2fo1e1          67 VNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT  145 (277)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             ccccCCCCCeeeccccccccccccccccc-cccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccch
Confidence            34567889999999999999999999999 79999999999999999999999999999998764   467778888999


Q ss_pred             HHHHHHHhCCHH---HHHHHHhcCC--------CCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHH
Q 006702          107 ALHWSAVRGAIQ---VAELLLREGA--------RVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPL  175 (634)
Q Consensus       107 pLh~A~~~g~~~---iv~~Ll~~ga--------d~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  175 (634)
                      +.+.+...+..+   .++.+.+...        ..+..+..|.||||.++..++.+++++++...+.+.+.+|..|.|||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL  225 (277)
T d2fo1e1         146 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  225 (277)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             hHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHH
Confidence            999999877544   4445554432        23556788999999999999999999988888999999999999999


Q ss_pred             HHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 006702          176 HWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ  225 (634)
Q Consensus       176 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~  225 (634)
                      |+|+..|+.+++++|++.|++++.+|.+|.||||+|++.|+.++|++|++
T Consensus       226 ~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         226 MLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-30  Score=252.17  Aligned_cols=188  Identities=24%  Similarity=0.302  Sum_probs=126.2

Q ss_pred             CCchHHHHHHHcCCHH----HHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHH
Q 006702           70 LGYYALQWAALNNRTA----AAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAA  145 (634)
Q Consensus        70 ~g~t~Lh~Aa~~g~~~----~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa  145 (634)
                      +|.||||+|+..|+.+    +++++...|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||+.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            3667777777777643    344455566677777777777777777777777777777777777777777777777777


Q ss_pred             HhCCHHHHHHHHHccCCC------CCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCC-CCCCcHHHHHHHcCCHH
Q 006702          146 QYGQTAFLYHIVSKWNAD------PDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-KEGCTPLHWAAIRGNLE  218 (634)
Q Consensus       146 ~~g~~~~v~~Ll~~~~~~------~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~g~~~  218 (634)
                      ..++.++++.|+.. +..      .......|.||||.|+..++.+++++|+..|+.++..+ .+|.||||+|++.|+.+
T Consensus        81 ~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          81 EQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHTCHHHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             ccccccccchhhhh-cccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            77777777766654 222      22334456777777777777777777777777766554 45777777777777777


Q ss_pred             HHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHH
Q 006702          219 ACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGN  260 (634)
Q Consensus       219 iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~  260 (634)
                      ++++|+++|  +|++.+|.+|+||||+|+..++.+++++|.+
T Consensus       160 ~v~~Ll~~g--ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         160 LVSLLLKCG--ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             HHHHHHTTT--CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             HHHHHHhcC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            777777777  5666777777777777777777777777643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.4e-29  Score=240.79  Aligned_cols=205  Identities=30%  Similarity=0.442  Sum_probs=189.1

Q ss_pred             HHHHHHHHhccCCCCcC-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Q 006702           50 LEKLQRLVECEGCSVSE-PDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGA  128 (634)
Q Consensus        50 ~~~v~~Ll~~~~~~~~~-~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~ga  128 (634)
                      .|+|+.|++ .|++++. .|.+|.||||+||..|+.+++++|++.|+++|.++..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~-~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLA-QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHH-CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            478999999 8899987 58999999999999999999999999999999999999999999999999988877776654


Q ss_pred             CC-CccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcH
Q 006702          129 RV-NAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTP  207 (634)
Q Consensus       129 d~-~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp  207 (634)
                      .. ......|.++.+.+.........+.|+.. +.+++.++..|.|||++|+..+..++++.|++.+.+++.+|..|.||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~Tp  159 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP  159 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             cccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccc
Confidence            33 44566788899999988888888888876 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHH
Q 006702          208 LHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL  258 (634)
Q Consensus       208 Lh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L  258 (634)
                      ||+|+..|+.++|++|+++|  +|++.+|..|.||||+|+++|+.+++++|
T Consensus       160 L~~A~~~g~~~~v~~Ll~~g--ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDNF--ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchhccccHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999  57889999999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=247.04  Aligned_cols=193  Identities=21%  Similarity=0.208  Sum_probs=173.8

Q ss_pred             chhhHHHHHHHcCCHHHHHHHHh---ccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHH
Q 006702           36 SLRNDVYTAAAYGDLEKLQRLVE---CEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSA  112 (634)
Q Consensus        36 ~~~~~L~~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~  112 (634)
                      .+.||||.|+..|+.+.++.+++   ..+.++|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            37899999999999766665443   268899999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhcCCCCC------ccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCC-CCCChHHHHHHhcCCHH
Q 006702          113 VRGAIQVAELLLREGARVN------AADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPD-NDGRSPLHWAAYKGFAD  185 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~gad~~------~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~  185 (634)
                      ..|+.++++.|++.+.+..      .....|.||||.|+..++.+.+.+|+.. +..++..+ .+|.||||+|+..|+.+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc-CcccccccccCCCCccccccccccHH
Confidence            9999999999999876643      3446689999999999999999999987 77777655 67999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 006702          186 CIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKK  229 (634)
Q Consensus       186 ~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~  229 (634)
                      ++++|++.|+|++.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus       160 ~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         160 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999998743

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-28  Score=238.61  Aligned_cols=207  Identities=25%  Similarity=0.281  Sum_probs=184.6

Q ss_pred             chHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCc---cccCCChHHHHHHHh
Q 006702           72 YYALQWAALNNRTAAAQYIIEH-GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNA---ADMYGYQTTHVAAQY  147 (634)
Q Consensus        72 ~t~Lh~Aa~~g~~~~v~~Ll~~-gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~---~d~~g~t~L~~Aa~~  147 (634)
                      +||||+||..|+.++++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+|+++|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4899999999999999999874 678999999999999999999999999999999999864   567899999999999


Q ss_pred             CCHHHHHHHHHccCC--CCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 006702          148 GQTAFLYHIVSKWNA--DPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQ  225 (634)
Q Consensus       148 g~~~~v~~Ll~~~~~--~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~  225 (634)
                      +..++++.++.. +.  +....+..+.|+++.++..++.+++++|++.|.+.+.+|..|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSS-SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccc-cccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence            999999988866 44  455677889999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHH-H-HHhcccCCCCCCcccccc
Q 006702          226 AGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNA-R-RLLDKRCDGNSPIGKISK  280 (634)
Q Consensus       226 ~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~-~-~l~~~~~~~~~~~~~~~~  280 (634)
                      .+. .+++.+|.+|.||||+|+..++.+++++|.+. + .+..++.+|.+|++.+.+
T Consensus       160 ~~~-~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         160 LGK-SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             TTC-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             ccc-ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            874 57889999999999999999999999998753 2 455566677777776654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.4e-29  Score=247.73  Aligned_cols=220  Identities=21%  Similarity=0.200  Sum_probs=162.4

Q ss_pred             cCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHH
Q 006702           65 SEPDGLGYYALQWAALNNRTAAAQYIIEHGGD---VNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTT  141 (634)
Q Consensus        65 ~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad---~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L  141 (634)
                      +..+++|.||||+||.+|+.+++++|+++|++   ++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            46788999999999999999999999999988   677888999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHccCCCCCCC---------CCCCChHHHHHH---hcC-CHHHHHHHhhcCCCCCCCCCCCCcHH
Q 006702          142 HVAAQYGQTAFLYHIVSKWNADPDVP---------DNDGRSPLHWAA---YKG-FADCIRLLLFLDAYRGRQDKEGCTPL  208 (634)
Q Consensus       142 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~---------d~~g~t~Lh~A~---~~g-~~~~v~~Ll~~ga~~~~~d~~g~TpL  208 (634)
                      |+|+..++.++++.|++.........         +....+.+..+.   ... .......+...+.+++.+|..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            99999999999999987632211100         011111111111   111 11223333455778889999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH-HHhcccCCCCCCcccccccCcch
Q 006702          209 HWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR-RLLDKRCDGNSPIGKISKLGLAP  285 (634)
Q Consensus       209 h~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~-~l~~~~~~~~~~~~~~~~~g~~~  285 (634)
                      |+|+..++.+++++|++++.+.+ ..++..|.||||+|++.++.+++++|.+.+ .+..++..+.+|++.+.+.+...
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             cccccccccccccchhccccccc-ccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            99999999999999999985432 346788999999999999999999986543 22233334444444444444433

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=3.5e-28  Score=246.08  Aligned_cols=232  Identities=24%  Similarity=0.304  Sum_probs=198.1

Q ss_pred             HHcCCHHHHHHHHhccCCCCcCC---------CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhC
Q 006702           45 AAYGDLEKLQRLVECEGCSVSEP---------DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRG  115 (634)
Q Consensus        45 a~~g~~~~v~~Ll~~~~~~~~~~---------d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g  115 (634)
                      ++....+.++.++... .+.+.+         +..+.|+|+.||..|+.++|++||++|+|+|.+|.+|.||||+|+..|
T Consensus         6 ~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g   84 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSE-TDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD   84 (291)
T ss_dssp             HHHHHHHHHHHHHHTT-TSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT
T ss_pred             HhHhhHHHHHHHHhCc-ccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcC
Confidence            3344456777776632 222211         123569999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhc-C
Q 006702          116 AIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFL-D  194 (634)
Q Consensus       116 ~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g  194 (634)
                      +.++|++|+++|++....+..+.+||+.|+..++.++++.|++. +...+..|..+.+++++|+..+..+.++.++.. +
T Consensus        85 ~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~  163 (291)
T d1s70b_          85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG  163 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred             Cceeeeeecccccccccccccccccccccccccccchhhccccc-CcccccccccCccccccccccccchhccccccccc
Confidence            99999999999999999999999999999999999999999987 899999999999999999999998888887743 2


Q ss_pred             C--------------------------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHh
Q 006702          195 A--------------------------YRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASD  248 (634)
Q Consensus       195 a--------------------------~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~  248 (634)
                      .                          +....+..|.||||.|+..|+.++++.|+++|  ++++.+|..|.||||+|+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g--~din~~~~~g~TpL~~A~~  241 (291)
T d1s70b_         164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR--YDVNIKDYDGWTPLHAAAH  241 (291)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHH
T ss_pred             cccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccce--ecccccccCCCCHHHHHHH
Confidence            2                          23456788999999999999999999999999  5788899999999999999


Q ss_pred             cCcHHHHHHHHHHH-HHhcccCCCCCCcccccc
Q 006702          249 KNHRQVAFFLGNAR-RLLDKRCDGNSPIGKISK  280 (634)
Q Consensus       249 ~~~~~i~~~L~~~~-~l~~~~~~~~~~~~~~~~  280 (634)
                      .|+.+++++|.+.+ .+..++..|.+|++.+.+
T Consensus       242 ~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         242 WGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999987654 344456677888888765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.8e-28  Score=220.77  Aligned_cols=153  Identities=28%  Similarity=0.368  Sum_probs=134.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHH
Q 006702           73 YALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF  152 (634)
Q Consensus        73 t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~  152 (634)
                      +|||+||..|+.++|++|+++|+|+|.+|..|.||||+|+ .|+.+++++|+++|++++.++..|.++++.++..++.+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7889999999999999999999999888888999998776 688889999999999888888888899999998888888


Q ss_pred             HHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 006702          153 LYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDA-YRGRQDKEGCTPLHWAAIRGNLEACTVLVQAG  227 (634)
Q Consensus       153 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  227 (634)
                      ++.|+.. +.+++..|..|.+|||+|+..++.+++++|+++++ +++.+|..|+||||+|++.++.+++++|+++|
T Consensus        82 ~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            8888876 88888888889999999999999999998888876 77888888999999999999999999998876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.5e-26  Score=209.17  Aligned_cols=154  Identities=26%  Similarity=0.339  Sum_probs=149.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHH
Q 006702           39 NDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQ  118 (634)
Q Consensus        39 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~  118 (634)
                      ++||.||..|++++|+.|++ .|++++.+|..|.||||+|+ .|+.+++++|+++|++++.++..|.+||+.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~-~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            79999999999999999999 79999999999999999886 78999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC
Q 006702          119 VAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD  194 (634)
Q Consensus       119 iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  194 (634)
                      .++.|++.+.+++..|..|.+|++.|+..++.+++++|+++.+.+.+.+|.+|.||||+|+..++.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999967799999999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-26  Score=209.46  Aligned_cols=152  Identities=29%  Similarity=0.373  Sum_probs=100.7

Q ss_pred             hhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH
Q 006702           38 RNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI  117 (634)
Q Consensus        38 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~  117 (634)
                      .+.|+.||..|+.+.|+.||++.+.+++.+|..|.||||+|+ .|+.+++++|++++++++..+..|.+|++.|+..++.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            345777777777777777776666677777777777777665 3666777777777777777766777777777777777


Q ss_pred             HHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh
Q 006702          118 QVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF  192 (634)
Q Consensus       118 ~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  192 (634)
                      +++++++++|++++.+|..|.||||+|+..|+.+++++|+ . +++++.+|.+|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-A-ESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-T-TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccccccccccCCCCeeecccccccccccccccc-c-cccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            7777777777666666666666666666666666665554 2 45556566666666666666666666665554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-25  Score=222.73  Aligned_cols=201  Identities=26%  Similarity=0.281  Sum_probs=172.2

Q ss_pred             cccchhhHHHHHHHcCCHHHHHHHHhccCCCCc---------------------------------CCCCCCchHHHHHH
Q 006702           33 DEESLRNDVYTAAAYGDLEKLQRLVECEGCSVS---------------------------------EPDGLGYYALQWAA   79 (634)
Q Consensus        33 ~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~---------------------------------~~d~~g~t~Lh~Aa   79 (634)
                      +++.+.||||.|+..|+.++++.|++ .+....                                 ..+..+.++|++|+
T Consensus        35 ~~~~g~tpL~~A~~~~~~eiv~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~  113 (285)
T d1wdya_          35 EEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA  113 (285)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHhhhhcc-ccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHH
Confidence            45578999999999999999999987 333322                                 22345678888888


Q ss_pred             HcCCHHHHHHHHhcCCCCCCC----------CCCCCcHHHHHHHhCCHHHHHHHHhc-CCCCCccccCCChHHHHHHHhC
Q 006702           80 LNNRTAAAQYIIEHGGDVNAA----------DHTGQTALHWSAVRGAIQVAELLLRE-GARVNAADMYGYQTTHVAAQYG  148 (634)
Q Consensus        80 ~~g~~~~v~~Ll~~gad~n~~----------~~~g~tpLh~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~L~~Aa~~g  148 (634)
                      ..++...++.+++...+++..          +..|.||||+|++.|+.+++++|+++ |++++..+..|.+++..+...+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~  193 (285)
T d1wdya_         114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS  193 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred             HhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccc
Confidence            888888888888877665543          34589999999999999999999965 8999999999999888776543


Q ss_pred             ----CHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 006702          149 ----QTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF-LDAYRGRQDKEGCTPLHWAAIRGNLEACTVL  223 (634)
Q Consensus       149 ----~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~L  223 (634)
                          ..+++++|+++ |++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|++.|+.++|++|
T Consensus       194 ~~~~~~~i~~~Li~~-ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~L  272 (285)
T d1wdya_         194 DDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             CTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHC-CCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                34688999987 99999999999999999999999999999997 4899999999999999999999999999999


Q ss_pred             HHcCCCCCccccCC
Q 006702          224 VQAGKKEDLMVTDN  237 (634)
Q Consensus       224 l~~g~~~d~~~~d~  237 (634)
                      +++|  +|+|++|.
T Consensus       273 l~~G--Ad~n~~d~  284 (285)
T d1wdya_         273 CKRG--ASTDCGDL  284 (285)
T ss_dssp             HHHS--SCSCCSSC
T ss_pred             HHCC--CCCCcccC
Confidence            9999  57777773

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.5e-26  Score=209.04  Aligned_cols=151  Identities=29%  Similarity=0.371  Sum_probs=137.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHH
Q 006702           73 YALQWAALNNRTAAAQYIIEH-GGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTA  151 (634)
Q Consensus        73 t~Lh~Aa~~g~~~~v~~Ll~~-gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~  151 (634)
                      +.|+.||..|+.++|+.|++. ++++|.+|..|.||||+|+. |+.+++++|++++++++..+..|.+|++.|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            469999999999999999875 78999999999999998874 7889999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 006702          152 FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQA  226 (634)
Q Consensus       152 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  226 (634)
                      +++.+++. +++++.+|.+|.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~-~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccc-ccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999987 8899999999999999999999999999877 6889999999999999999999999999999876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.4e-25  Score=211.71  Aligned_cols=215  Identities=21%  Similarity=0.247  Sum_probs=187.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHH
Q 006702           69 GLGYYALQWAALNNRTAAAQYIIE----HGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVA  144 (634)
Q Consensus        69 ~~g~t~Lh~Aa~~g~~~~v~~Ll~----~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~A  144 (634)
                      ++|.||||+||..|+.++++.|++    .|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999998874    7999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHccC---CCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCC-CCCCCCCcHHHHHHHcCCHHHH
Q 006702          145 AQYGQTAFLYHIVSKWN---ADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRG-RQDKEGCTPLHWAAIRGNLEAC  220 (634)
Q Consensus       145 a~~g~~~~v~~Ll~~~~---~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~TpLh~A~~~g~~~iv  220 (634)
                      ...++.++++.+.....   ...+.......++|+.+.........+.|.....+.. ..+..+.+||+.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            99999998887766522   2345566778899999999999999999988776653 4566899999999999999999


Q ss_pred             HHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHHHH-HHhcccCCCCCCcccccccCcch
Q 006702          221 TVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFLGNAR-RLLDKRCDGNSPIGKISKLGLAP  285 (634)
Q Consensus       221 ~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L~~~~-~l~~~~~~~~~~~~~~~~~g~~~  285 (634)
                      +.++++|  .+.+.+|..|.|||++|+..|+.+++++|.+.+ .+..++.+|.+|++.+.+.|...
T Consensus       161 ~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         161 QLLLQHG--ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             HHHHHTT--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             hhhhhhc--cccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcc
Confidence            9999998  577889999999999999999999999997755 34455677888888777666543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=9.5e-26  Score=205.56  Aligned_cols=149  Identities=24%  Similarity=0.314  Sum_probs=99.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHH
Q 006702           73 YALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF  152 (634)
Q Consensus        73 t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~  152 (634)
                      ||||.||+.|+.++|++||++|++++ .|..|+||||+|+..++.++++.++.........+..+.++++.++...+.+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            66777777777777777777776665 46667777777777777777776666666666666666666666666666666


Q ss_pred             HHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 006702          153 LYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVL  223 (634)
Q Consensus       153 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~L  223 (634)
                      +++++.. +++.+.+|.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.+|+.|++++|
T Consensus        83 ~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeccccc-CCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            6666554 666666666666666666666666666666666666666666666666666666666666654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=4e-25  Score=211.98  Aligned_cols=188  Identities=24%  Similarity=0.270  Sum_probs=175.2

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCcHHHHHH
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGD-VNAADHTGQTALHWSA  112 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad-~n~~~~~g~tpLh~A~  112 (634)
                      ++.+.||||.||+.|+.++++.|++ .+++++.++..+.++++.++..++.+........... .......+.++.+.+.
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~-~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLD-AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-hccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6779999999999999999999998 8999999999999999999999999988877765443 3334457889999999


Q ss_pred             HhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh
Q 006702          113 VRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF  192 (634)
Q Consensus       113 ~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  192 (634)
                      ......+.+.|.+.+++++.++..|.|||+.|+..+..+++..++.. +.+++.+|..|.||||+|+..|+.+++++|++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  177 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLFLAAREGSYEASKALLD  177 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc-cccccccccccccccchhccccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988 89999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 006702          193 LDAYRGRQDKEGCTPLHWAAIRGNLEACTVL  223 (634)
Q Consensus       193 ~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~L  223 (634)
                      .|++++.+|..|+||||+|+++|+.++|++|
T Consensus       178 ~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         178 NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=4.3e-28  Score=252.60  Aligned_cols=231  Identities=13%  Similarity=-0.013  Sum_probs=175.6

Q ss_pred             ccccchhhHHHHHHHcCCHHHHHHH--HhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--CCCcH
Q 006702           32 VDEESLRNDVYTAAAYGDLEKLQRL--VECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADH--TGQTA  107 (634)
Q Consensus        32 ~~~~~~~~~L~~Aa~~g~~~~v~~L--l~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~--~g~tp  107 (634)
                      ..+..+.++|+.||+.|+.+.++.+  |.+.|++++.+|..|.||||+||.+|+.++|++|+++|++++..+.  .|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            3456789999999999999887763  3348999999999999999999999999999999999999988763  58999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCC---ccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCC-------CCCCCChHHHH
Q 006702          108 LHWSAVRGAIQVAELLLREGARVN---AADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDV-------PDNDGRSPLHW  177 (634)
Q Consensus       108 Lh~A~~~g~~~iv~~Ll~~gad~~---~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~-------~d~~g~t~Lh~  177 (634)
                      ||+|+..|+.++|++|++.|++..   ..+..+.||++.|+.+|+.+++++|++. |++++.       ....+.++++.
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HHHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC-CCCcchHHHHHHHcCcHhhhHHHH
Confidence            999999999999999999998753   3445667888889999999999999976 554332       23334466666


Q ss_pred             HHhcCCHHHHHHHhhcCCC--CCCCCC-------CCCcHHHHHHHcCCHHHHHHHHHcCCCC---CccccCCCCCCHHHH
Q 006702          178 AAYKGFADCIRLLLFLDAY--RGRQDK-------EGCTPLHWAAIRGNLEACTVLVQAGKKE---DLMVTDNTGLTPAQL  245 (634)
Q Consensus       178 A~~~g~~~~v~~Ll~~ga~--~~~~d~-------~g~TpLh~A~~~g~~~iv~~Ll~~g~~~---d~~~~d~~g~Tpl~~  245 (634)
                      +...+..+....+.....+  .+..+.       .+.++|+.|+..+..+++++|++.+...   +....+.+|.||||+
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl  323 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  323 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH
Confidence            6666655555444433222  222222       2347888999999999999999987421   233455679999999


Q ss_pred             HHhcCcHHHHHHHHHHHH
Q 006702          246 ASDKNHRQVAFFLGNARR  263 (634)
Q Consensus       246 A~~~~~~~i~~~L~~~~~  263 (634)
                      |++.|+.+++++|.+...
T Consensus       324 A~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         324 ALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             HHHHTCTTHHHHHTTSHH
T ss_pred             HHHcCcHHHHHHHhCCCC
Confidence            999999999999965443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=7.3e-25  Score=199.62  Aligned_cols=150  Identities=27%  Similarity=0.357  Sum_probs=141.9

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCH
Q 006702          105 QTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFA  184 (634)
Q Consensus       105 ~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  184 (634)
                      .||||.||+.|+.++|++|+++|++++ .|..|.||||+|+..++.+++..++.. .......+..+.++++.++...+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            399999999999999999999999987 699999999999999999999998877 666677788889999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHHhcCcHHHHHHH
Q 006702          185 DCIRLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLASDKNHRQVAFFL  258 (634)
Q Consensus       185 ~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~~~~~~~i~~~L  258 (634)
                      +.+++++..|++.+.+|.+|.||||+|+..|+.++|++|+++|  ++++.+|..|.||||+|+++|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g--ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG--ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccc--cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999999999999999999999  67889999999999999999999999987

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.6e-25  Score=222.92  Aligned_cols=183  Identities=20%  Similarity=0.227  Sum_probs=129.5

Q ss_pred             cCCCCcCC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCH-------HHHHHHHhcCCCCC
Q 006702           60 EGCSVSEP-DGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAI-------QVAELLLREGARVN  131 (634)
Q Consensus        60 ~~~~~~~~-d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~-------~iv~~Ll~~gad~~  131 (634)
                      .+.++|.+ |..|+||||+||..|+.++|++|+++|+|++.+|..|+||||.|+..++.       +++++|.   .++.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhh
Confidence            46677765 88999999999999999999999999999999999999999999987652       3444443   3466


Q ss_pred             ccccCCChHHHHHHHhCC----HH--------HHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhh---cCCC
Q 006702          132 AADMYGYQTTHVAAQYGQ----TA--------FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLF---LDAY  196 (634)
Q Consensus       132 ~~d~~g~t~L~~Aa~~g~----~~--------~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~---~ga~  196 (634)
                      .+|..|+||||.|+..+.    ..        ++.+++.............+.++++.+........++.+..   .+..
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            788899999998886543    22        33444555444445556666677776666555444433211   1234


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Q 006702          197 RGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGLTPAQLAS  247 (634)
Q Consensus       197 ~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g~~~d~~~~d~~g~Tpl~~A~  247 (634)
                      +|.+|.+|+||||+|++.|+.++|++|+++|  +|++.+|+.|.|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G--Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYG--ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT--CCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHcC
Confidence            7889999999999999999999999999999  678899999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=184.88  Aligned_cols=115  Identities=32%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCC-hHHHHHHHhCCHH
Q 006702           73 YALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGY-QTTHVAAQYGQTA  151 (634)
Q Consensus        73 t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~-t~L~~Aa~~g~~~  151 (634)
                      ++||+||..|+.++|++|+++|+|+|.+|..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||.|+..|+.+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~   83 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   83 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            4444444444444444444444444444444444444332 3444444444444444444433332 2333333333333


Q ss_pred             HHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHH
Q 006702          152 FLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRL  189 (634)
Q Consensus       152 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  189 (634)
                      ++++|++. |++++.+|..|.||||+|+.+|+.+++++
T Consensus        84 ~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~  120 (125)
T d1bi7b_          84 TLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARY  120 (125)
T ss_dssp             HHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHH
Confidence            33333333 33333333333333333333333333333

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-23  Score=183.88  Aligned_cols=122  Identities=25%  Similarity=0.376  Sum_probs=114.8

Q ss_pred             cchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-cHHHHHHH
Q 006702           35 ESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQ-TALHWSAV  113 (634)
Q Consensus        35 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~-tpLh~A~~  113 (634)
                      |+..+.||.|++.|++++++.|++ .|++++.+|..|.||||+|+ .|+.+++++|+++|+++|.++..+. ||||+|++
T Consensus         1 ep~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           1 EPSADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CCChhHHHHHHHCCCHHHHHHHHH-cCCccccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            356789999999999999999998 79999999999999999765 7999999999999999999998765 69999999


Q ss_pred             hCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHH
Q 006702          114 RGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVS  158 (634)
Q Consensus       114 ~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~  158 (634)
                      .|+.+++++|+++|++++.+|..|.||||+|++.|+.+++++|++
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=7.7e-26  Score=235.40  Aligned_cols=225  Identities=14%  Similarity=0.040  Sum_probs=164.4

Q ss_pred             cCCCCCCchHHHHHHHcCCHHHHHH---HHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccc--cCCCh
Q 006702           65 SEPDGLGYYALQWAALNNRTAAAQY---IIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAAD--MYGYQ  139 (634)
Q Consensus        65 ~~~d~~g~t~Lh~Aa~~g~~~~v~~---Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d--~~g~t  139 (634)
                      +.++..|.||||+||.+|+.+++++   |++.|+++|.+|..|.||||+||+.|+.++|++|+++|++++..+  ..|.|
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            3556789999999999999887765   789999999999999999999999999999999999999998876  45899


Q ss_pred             HHHHHHHhCCHHHHHHHHHccCCCC---CCCCCCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCC-------CCCCcHHH
Q 006702          140 TTHVAAQYGQTAFLYHIVSKWNADP---DVPDNDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQD-------KEGCTPLH  209 (634)
Q Consensus       140 ~L~~Aa~~g~~~~v~~Ll~~~~~~~---~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-------~~g~TpLh  209 (634)
                      |||+|+..|+.+++++|++. +.+.   +..+.++.||++.|+.+|+.+++++|++.|++++..+       ..+.++++
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  242 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI  242 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHHHc-CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHH
Confidence            99999999999999999987 5443   3345567788889999999999999999998765432       23345666


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCccccCC-------CCCCHHHHHHhcCcHHHHHHHHHHHHHhc------ccCCCCCCcc
Q 006702          210 WAAIRGNLEACTVLVQAGKKEDLMVTDN-------TGLTPAQLASDKNHRQVAFFLGNARRLLD------KRCDGNSPIG  276 (634)
Q Consensus       210 ~A~~~g~~~iv~~Ll~~g~~~d~~~~d~-------~g~Tpl~~A~~~~~~~i~~~L~~~~~l~~------~~~~~~~~~~  276 (634)
                      .+...+..+....+.....+...+..+.       .+.++++.|+..++.+++++|.+......      ...++++|++
T Consensus       243 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         243 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             HHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH
Confidence            6666555555555544433333332222       23578889999999999999875433211      1123455666


Q ss_pred             cccccCcchhHHHH
Q 006702          277 KISKLGLAPALWCV  290 (634)
Q Consensus       277 ~~~~~g~~~l~~~~  290 (634)
                      .+.+.|...+.-++
T Consensus       323 lA~~~Gn~e~v~lL  336 (346)
T d2ajaa1         323 LALRLGNQGACALL  336 (346)
T ss_dssp             HHHHHTCTTHHHHH
T ss_pred             HHHHcCcHHHHHHH
Confidence            66666665554433

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=7.3e-24  Score=184.71  Aligned_cols=105  Identities=29%  Similarity=0.395  Sum_probs=52.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHH
Q 006702           73 YALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAF  152 (634)
Q Consensus        73 t~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~  152 (634)
                      |||++|+++|+.++|++|+++|+|+|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            45555555555555555555555555555555555555555555555555555555544444444444444444444444


Q ss_pred             HHHHHHccCCCCCCCCCCCChHHHHH
Q 006702          153 LYHIVSKWNADPDVPDNDGRSPLHWA  178 (634)
Q Consensus       153 v~~Ll~~~~~~~~~~d~~g~t~Lh~A  178 (634)
                      +++|++. |++++.+|.+|.||||+|
T Consensus        84 v~~Ll~~-Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          84 VKLLLSK-GADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTT-CCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhcc-cccceeeCCCCCCHHHHH
Confidence            4444433 444444444444444443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.3e-23  Score=183.00  Aligned_cols=105  Identities=29%  Similarity=0.433  Sum_probs=58.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHH
Q 006702          106 TALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFAD  185 (634)
Q Consensus       106 tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  185 (634)
                      |||++|++.|+.++|++|+++|+|++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCchh
Confidence            455555555555555555555555555555555555555555555555555544 5555555555555555555555555


Q ss_pred             HHHHHhhcCCCCCCCCCCCCcHHHHH
Q 006702          186 CIRLLLFLDAYRGRQDKEGCTPLHWA  211 (634)
Q Consensus       186 ~v~~Ll~~ga~~~~~d~~g~TpLh~A  211 (634)
                      ++++|++.|++++.+|.+|.||||+|
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH
Confidence            55555555555555555555555554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.5e-22  Score=175.28  Aligned_cols=85  Identities=28%  Similarity=0.337  Sum_probs=37.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHH
Q 006702           74 ALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFL  153 (634)
Q Consensus        74 ~Lh~Aa~~g~~~~v~~Ll~~gad~n~~~~~g~tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v  153 (634)
                      +|+.||..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444443333333333333333333


Q ss_pred             HHHHH
Q 006702          154 YHIVS  158 (634)
Q Consensus       154 ~~Ll~  158 (634)
                      ++|++
T Consensus        84 ~~Ll~   88 (130)
T d1ycsb1          84 KFLVE   88 (130)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.2e-22  Score=174.64  Aligned_cols=120  Identities=19%  Similarity=0.169  Sum_probs=80.9

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHH
Q 006702          106 TALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFAD  185 (634)
Q Consensus       106 tpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  185 (634)
                      ++|+.|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.+++++|++. |++++.+|.+|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccc-ccccccccccCcccccccchhhHHH
Confidence            466777777777777777777777777777777777777777777777776665 6666666777777777777777777


Q ss_pred             HHHHHhhcCCCCCCCCC-CCCcHHHHH--HHcCCHHHHHHHHHc
Q 006702          186 CIRLLLFLDAYRGRQDK-EGCTPLHWA--AIRGNLEACTVLVQA  226 (634)
Q Consensus       186 ~v~~Ll~~ga~~~~~d~-~g~TpLh~A--~~~g~~~iv~~Ll~~  226 (634)
                      ++++|+++|++++..+. .|+||++++  +.+|+.+++++|+..
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            77777766666665543 356655543  455666666666654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.6e-21  Score=174.65  Aligned_cols=124  Identities=18%  Similarity=0.259  Sum_probs=107.4

Q ss_pred             chhhHHHHHHHcCCHHHHHHHHhccCCCCcCC------CCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCc
Q 006702           36 SLRNDVYTAAAYGDLEKLQRLVECEGCSVSEP------DGLGYYALQWAALN---NRTAAAQYIIEHGGDVNAADHTGQT  106 (634)
Q Consensus        36 ~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~g~t~Lh~Aa~~---g~~~~v~~Ll~~gad~n~~~~~g~t  106 (634)
                      ..-..|+.|++.+++..+..++. .|.+++.+      +..|.||||+|+..   +..+++++|+++|+++|.+|..|+|
T Consensus         5 ~~l~~L~~Av~~~dl~~l~~~~~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~T   83 (154)
T d1dcqa1           5 AKLHSLCEAVKTRDIFGLLQAYA-DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGST   83 (154)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHH-cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcc
Confidence            34456889999999999999887 66665544      67789999999974   6789999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCCccccCCChHHHHHHHhCCHHHHHHHHHcc
Q 006702          107 ALHWSAVRGAIQVAELLLREGARVNAADMYGYQTTHVAAQYGQTAFLYHIVSKW  160 (634)
Q Consensus       107 pLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~~  160 (634)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++..
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999888763

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=6.6e-22  Score=201.27  Aligned_cols=172  Identities=19%  Similarity=0.186  Sum_probs=125.3

Q ss_pred             ccchhhHHHHHHHcCCHHHHHHHHhccCCCCcCCCCCCchHHHHHHHcCCH-------HHHHHHHhcCCCCCCCCCCCCc
Q 006702           34 EESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRT-------AAAQYIIEHGGDVNAADHTGQT  106 (634)
Q Consensus        34 ~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~-------~~v~~Ll~~gad~n~~~~~g~t  106 (634)
                      |+.++||||.||..|+.++|+.|++ .|++++.+|..|+||||.|+..++.       +++++|.   .+++.+|..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCC
Confidence            6789999999999999999999998 7999999999999999999987652       4444443   356677889999


Q ss_pred             HHHHHHHhCC----HH--------HHHHHHhcCCCC-CccccCCChHHHHHHHhCCHHHH-----HHHHHccCCCCCCCC
Q 006702          107 ALHWSAVRGA----IQ--------VAELLLREGARV-NAADMYGYQTTHVAAQYGQTAFL-----YHIVSKWNADPDVPD  168 (634)
Q Consensus       107 pLh~A~~~g~----~~--------iv~~Ll~~gad~-~~~d~~g~t~L~~Aa~~g~~~~v-----~~Ll~~~~~~~~~~d  168 (634)
                      |||.|+..+.    ..        +++++++.+... ......+.++++.+........+     .+++.   ..+|.+|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~in~~D  256 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA---NMLNAQD  256 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH---HTTTCCC
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh---cCccCCC
Confidence            9999887554    22        344555655443 33444555666655554433332     22332   3478899


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCcHHHHHH
Q 006702          169 NDGRSPLHWAAYKGFADCIRLLLFLDAYRGRQDKEGCTPLHWAA  212 (634)
Q Consensus       169 ~~g~t~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~  212 (634)
                      .+|+||||+|+++|+.++|++|++.|++++.+|+.|.|||++|+
T Consensus       257 ~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         257 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1e-19  Score=165.67  Aligned_cols=120  Identities=17%  Similarity=0.228  Sum_probs=68.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCC------CCCCCcHHHHHHHh---CCHHHHHHHHhcCCCCCccccCCChHHHHH
Q 006702           74 ALQWAALNNRTAAAQYIIEHGGDVNAA------DHTGQTALHWSAVR---GAIQVAELLLREGARVNAADMYGYQTTHVA  144 (634)
Q Consensus        74 ~Lh~Aa~~g~~~~v~~Ll~~gad~n~~------~~~g~tpLh~A~~~---g~~~iv~~Ll~~gad~~~~d~~g~t~L~~A  144 (634)
                      .|..|+..++...+..++..|+|++..      +..|+||||+|++.   |+.++|++|+++|++++.+|..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            345666777777777777777665543      34566666666653   455666666666666655555555555555


Q ss_pred             HHhCCHHHHHHHHHccCCCCCCCCCCCChHHHHHHhcCCHHHHHHHhhcC
Q 006702          145 AQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLD  194 (634)
Q Consensus       145 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  194 (634)
                      +..|+.+++++|++. |++++.+|.+|.||||+|+..|+.+++++|++.+
T Consensus        89 ~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          89 CLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccc-CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            555555555555544 5555555555555555555555555555555443