Citrus Sinensis ID: 006738

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630---

MKTSLRRWRGFTLHKHGDSKDRRDLRPLAQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDDMDDGDDDDNGSDSRGDGELSFDYRQNEQEQDAVSSSRKSMELDQPDITFSQVARLETSKETLDRNYRKSLSFSREVRFSSQSAPLFMDNKSDLDDRRKQMRQSSTRKFNTYVLPTPGDTKSSHSPGPGSPVPSALRPSLGGQTYNLRHESPLDMLKFDKSLGGDKTSKDTAQSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSFSGPLTGPRPAKPVLKEHQQLLSGPLLRNPMPQPPSSSPKVSPSTSPTFVSSPKISELHELPRPPGRLNLNSARPMGLVGHSAPLLPKGQVLSAPSKSAMENVASPLPKPPQTITRSFSIPSSSHEMETAHNLEMASPPLTPISLTTKNPSSAVSEPVVQTVEIRGAE

ccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccEEEcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHcccHcccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccc

mktslrrwrgftlhkhgdskdrrdlrplaQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEktalndneESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQrekgrskngkgetfSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQfrgledddmddgddddngsdsrgdgelsfdyrqneqeqdavsssrksmeldqpditfsQVARLETSKETLDRNYRkslsfsrevrfssqsaplfmdnksdldDRRKQMRQSStrkfntyvlptpgdtksshspgpgspvpsalrpslggqtynlrhespldmlkfdkslggdktskDTAQSILResnnntasirlpppppadgfllsrldprgasvpkkvkrqsfsgpltgprpakpvlkehqqllsgpllrnpmpqppssspkvspstsptfvsspkiselhelprppgrlnlnsarpmglvghsapllpkgqvlsapsksamenvasplpkppqtitrsfsipssshemetahnlemasppltpislttknpssavsepvVQTVEIRGAE

mktslrrwrgftlhkhgdskdrrdlRPLAQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQtitipsesllnELQTVEEMkrqcdekrnVCEYMLMRqrekgrskngkgETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDDMDDGDDDDNGSDSRGDGELSFDYRQNEQEQDavsssrksmeldqpditfsqvarletsketldrnyrkslsfsrevrfssqsaplfmdnksdlddrRKQMrqsstrkfntyvlptpgdtksshspgpGSPVPSALRPSLGGQTYNLRHESPLDMLKFDKSLGGDKTSKDTAQSILREsnnntasirlpppPPADGFLLSRLDPRGasvpkkvkrqsfsgpltgprpakpvLKEHQQLLSGPLLRNPMPQPPSSSPKVSPSTSPTFVSspkiselhelprppGRLNLNSARPMGLVGHSAPLLPKGQVLSAPSKSAMENVasplpkppqtiTRSFSIPSSSHEMETAHNLEMASPPLTPISLTtknpssavsepvvqtveirgae

MKTSLRRWRGFTLHKHGDSKDRRDLRPLAQLDELAQASQDMQDMRGCYDsllsaaaatansaYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEdddmddgddddngsdsrgdgELSFDYRQNEQEQDAVSSSRKSMELDQPDITFSQVARLETSKETLDRNYRKSLSFSREVRFSSQSAPLFMDNKSDLDDRRKQMRQSSTRKFNTYVLPTPGDTKsshspgpgspvpsALRPSLGGQTYNLRHESPLDMLKFDKSLGGDKTSKDTAQSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSFSGPLTGPRPAKPVLKEHQQLLSGPLLRNpmpqppssspkvspstsptfvsspkISELHELPRPPGRLNLNSARPMGLVGHSAPLLPKGQVLSAPSKSAMENVASPLPKPPQTITRSFSIPSSSHEMETAHNLEMASPPLTPISLTTKNPSSAVSEPVVQTVEIRGAE

*********************************************GCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTV***********NVCEYML*******************************EATLFVFRLKSL********L**AARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQF*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

******R***F*******************LDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCE*******************************YDQEATLFVFRLKSLKQG*S**LLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDDMDDGDDDDNGSDSRGD********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

MKTSLRRWRGFTLHKHGDSKDRRDLRPLAQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQR**********ETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDDMD*************DGELSFDYR*****************LDQPDITFSQVARLETSKETLDRNYRKSLSFSREVRFSSQSAPLFMDNKSD**********SSTRKFNTYVLPT******************ALRPSLGGQTYNLRHESPLDMLKFDKSLGGDKTSKDTAQSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSFSGPLTGPRPAKPVLKEHQQLLSGPLLRNPM**************************LHELPRPPGRLNLNSARPMGLVGHSAPLLPKGQVLSAPSKSAMENVASPLPKPPQTITRSFSI***********NLEMASPPLTPISLTT***********VQTVEIRGAE

************L********RRDLRPLAQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREK**********FSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLE***************SRGDGELSFDYRQN*******************************************************************DDRRKQMRQSSTRKFNTYVLPTPGD*******************************************************************RLPPPPPADGFLLSRL*PRGASVPKKVKRQSFSGP************************************************P*IS***ELPRPPG******************************************K*P*T*******************************************************

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MKTSLRRWRGFTLHKHGDSKDRRDLRPLAQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPxxxxxxxxxxxxxxxxxxxxxRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDYQFRGLEDDDMDDGDDDDNGSDSRGDGELSFDYRQNEQEQDAVSSSRKSMELDQPDITFSQVARLETSKETLDRNYRKSLSFSREVRFSSQSAPLFMDNKSDLDDRRKQMRQSSTRKFNTYVLPTPGDTKSSHSPGPGSPVPSALRPSLGGQTYNLRHESPLDMLKFDKSLGGDKTSKDTAQSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSFSGPLTGPRPAKPVLKEHQQLLSGPLLRNPMPQPPSSSPKVSPSTSPTFVSSPKISELHELPRPPGRLNLNSARPMGLVGHSAPLLPKGQVLSAPSKSAMENVASPLPKPPQTITRSFSIPSSSHEMETAHNLEMASPPLTPISLTTKNPSSAVSEPVVQTVEIRGAE

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		633	2.2.26 [Sep-21-2011]
O22799		623	Uncharacterized protein A	yes	no	0.903	0.918	0.591	1e-172

>sp\|O22799\|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=1 SV=2	Back alignment and function desciption

 Score =  605 bits (1561), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 377/637 (59%), Positives = 449/637 (70%), Gaps = 65/637 (10%)

Query: 1   MKTSLRRWRGFTLHKHGDSKDRRDLRPLAQLDELAQASQDMQDMRGCYDSLLSAAAATAN 60
           MKTSLRR RG  LHKH +SKDRRDLR L Q DELAQASQD++DMR CYDSLL+AAAATAN
Sbjct: 1   MKTSLRRLRG-VLHKH-ESKDRRDLRALVQKDELAQASQDVEDMRDCYDSLLNAAAATAN 58

Query: 61  SAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120
           SAYEFSESL+ELGACLLEKTALND+EESG+VL+MLGK+QFELQKLVD YRSHIFQTITIP
Sbjct: 59  SAYEFSESLRELGACLLEKTALNDDEESGRVLIMLGKLQFELQKLVDKYRSHIFQTITIP 118

Query: 121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQ 180
           SESLLNEL+ VEEM+R CDEKRNV E ML RQREKGRSK GKGETFS QQLQEAHD+Y+ 
Sbjct: 119 SESLLNELRIVEEMQRLCDEKRNVYEGMLTRQREKGRSKGGKGETFSPQQLQEAHDDYEN 178

Query: 181 EATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDY 240
           E TLFVFRLKSLKQGQ+RSLLTQAARHHAAQL F KKAL SLE VDPHV+MV E QHIDY
Sbjct: 179 ETTLFVFRLKSLKQGQTRSLLTQAARHHAAQLCFFKKALSSLEEVDPHVQMVTESQHIDY 238

Query: 241 QFRGL--EDDDMDDGDDDDNGSDSRGDGELSFDYRQNEQEQDAVSSSRKSMELDQPDITF 298
            F GL  +D D +  +++++GS+   DGELSF+YR N+++QDA SS+  S EL   DITF
Sbjct: 239 HFSGLEDDDGDDEIENNENDGSEVHDDGELSFEYRVNDKDQDADSSAGGSSELGNSDITF 298

Query: 299 SQVARLETSKETLDRNYRKSLSFSREVRFSSQSAPLFMDNKSD-LDDRRKQMRQSSTRKF 357
            Q+    T++E  + NYRKS SF R+VR  SQSAPLF +N++    ++  +MR + TRKF
Sbjct: 299 PQIGGPYTAQENEEGNYRKSHSFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKF 358

Query: 358 NTYVLPTPGDTKSSHSP-------GPGSPVPSALRPSLGGQTYNLRHESPLDMLKFDKSL 410
           NTY LPTP +T  S S          GS  P+         T  + + SPL+      + 
Sbjct: 359 NTYALPTPVETTRSPSSTTSPGHKNVGSSNPTK------AITKQIWYSSPLE------TR 406

Query: 411 GGDKTSKDTA----QSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSF 466
           G  K S  +     + +LRESN NT+ +   PPP ADG L SRL          +KR+SF
Sbjct: 407 GPAKVSSRSMVALKEQVLRESNKNTSRL---PPPLADGLLFSRLG--------TLKRRSF 455

Query: 467 SGPLTG-PRPAKPVLKEHQQLLSGPLLRNPMPQPPSSSPKVSPSTSPTFVSSPKISELHE 525
           SGPLT  P P KP L     L SGP+ RNP+ + P  S   SP+ SPTFVS+PKISELHE
Sbjct: 456 SGPLTSKPLPNKP-LSTTSHLYSGPIPRNPVSKLPKVS--SSPTASPTFVSTPKISELHE 512

Query: 526 LPRPPGRLNLNSARPMGLVGHSAPLLPKGQVLSAPSKSAMENVASPLPKPPQTITRSFSI 585
           LPRPP R +  S+R +   G+SAPL+ + Q+LS P    + N ASPLP PP  ITRSFSI
Sbjct: 513 LPRPPPRSSTKSSREL---GYSAPLVSRSQLLSKP---LITNSASPLPIPP-AITRSFSI 565

Query: 586 PSSSHEMETAHNLEMA------------SPPLTPISL 610
           P+S+     A +L+M+            SPPLTP+SL
Sbjct: 566 PTSNLR---ASDLDMSKTSLGTKKLGTPSPPLTPMSL 599

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		633
224053537		629	predicted protein [Populus trichocarpa]	0.962	0.968	0.628	0.0
449445582		642	PREDICTED: uncharacterized protein At2g3	0.965	0.951	0.617	0.0
255543142		681	conserved hypothetical protein [Ricinus	0.988	0.919	0.617	0.0
296088724		651	unnamed protein product [Vitis vinifera]	0.987	0.960	0.593	1e-180
356569127		631	PREDICTED: uncharacterized protein At2g3	0.960	0.963	0.614	1e-178
225425164		653	PREDICTED: uncharacterized protein At2g3	0.987	0.957	0.591	1e-178
224075509		574	predicted protein [Populus trichocarpa]	0.878	0.968	0.633	1e-174
357501351		732	hypothetical protein MTR_7g005390 [Medic	0.917	0.793	0.614	1e-171
30685727		623	hydroxyproline-rich glycoprotein-like pr	0.903	0.918	0.591	1e-170
297823145		624	hydroxyproline-rich glycoprotein family	0.903	0.916	0.590	1e-169

>gi\|224053537\|ref\|XP_002297862.1\| predicted protein [Populus trichocarpa] gi\|222845120\|gb\|EEE82667.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/649 (62%), Positives = 468/649 (72%), Gaps = 40/649 (6%)

Query: 1   MKTSLRRWRGFT-LHKHG---DSKDRRDLRPLAQLDELAQASQDMQDMRGCYDSLLSAAA 56
           MK+SLR+ RG   LHKHG   D KDRRDL  LAQLDELA+A +DMQDM+ CYDSLLSAA+
Sbjct: 1   MKSSLRKLRGLAALHKHGHGGDHKDRRDLLSLAQLDELAKAYRDMQDMKDCYDSLLSAAS 60

Query: 57  ATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQT 116
           ATAN AYEFSES++E+GACLLEKTA ND+EE GKVLLMLGKVQFEL+KLVD YRSHI +T
Sbjct: 61  ATANCAYEFSESVREMGACLLEKTASNDDEEGGKVLLMLGKVQFELEKLVDCYRSHIHKT 120

Query: 117 ITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHD 176
           I  PSESLLNELQTVEEMKR CDEKR+V EYM+ RQ+EKGR ++GKGE+ S+QQ+Q AHD
Sbjct: 121 IISPSESLLNELQTVEEMKRLCDEKRDVYEYMV-RQKEKGRGRSGKGESVSMQQVQAAHD 179

Query: 177 EYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAA-QLSFVKKALKSLEAVDPHVKMVAEQ 235
           EYD+EATLFVFR+KSLKQGQSRSLLTQAARHHAA QL F KKALKSLEAV+PHVK+V E+
Sbjct: 180 EYDEEATLFVFRIKSLKQGQSRSLLTQAARHHAAQQLYFFKKALKSLEAVEPHVKLVTER 239

Query: 236 QHIDYQFRGL-EDDDMDDGDDDDNGSDSRGDGELSFDYRQNEQEQDAVSSSRKSMELDQP 294
           QHIDY F GL +D   D  DDD++  D+  DGELSFDY QN+QEQ+ VS+ +KSMELD  
Sbjct: 240 QHIDYHFSGLDDDGRDDVDDDDEDYDDANDDGELSFDYGQNDQEQE-VSTPKKSMELDSA 298

Query: 295 DITFSQVARLETSKETLDRNYRKSLSFSREVRFSSQSAPLFMDNKSDLDDRRKQMRQSST 354
            +TF QVA LE +KE LDR+YR + SF  E++  +QSAPLF +  SD   + K++  SST
Sbjct: 299 GVTFPQVATLEMAKENLDRSYRTTSSFKGELQTGTQSAPLFAETTSDPAGKTKKLTPSST 358

Query: 355 RKFNTYVLPTPGDTKSSHSPGPGSPVPSALRPSLGGQTYNLRHESPLDMLKFDKSLGGDK 414
           RK NTYVLPTP D KSS+  G GSPV   L+ SL  +T NL H SPLD  K         
Sbjct: 359 RKLNTYVLPTPADPKSSNPTGSGSPVSGTLKISLSSRTPNLWHSSPLDQKKI-------- 410

Query: 415 TSKDTAQSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSFSGPLTG-P 473
                      E+NNNTAS RL PPP ADG L SRL+P  A   KK +R +FSGP+T  P
Sbjct: 411 -----------ENNNNTASTRL-PPPLADGHLFSRLEPLAAFDSKKTRRYAFSGPITSKP 458

Query: 474 RPAKPVLKEHQQLLSGPLLRNPMPQ-------PPSSSPKVSPSTSPTFVSSPKISELHEL 526
              KPV  EH QL SGPLLRNP  Q        P  SPKVSPS SPTFVS PKISELHEL
Sbjct: 459 LSTKPVSAEHPQLFSGPLLRNPATQLLSPPKVSPIISPKVSPSASPTFVSPPKISELHEL 518

Query: 527 PRPPGRLNLNSARPMGLVGHSAPLLPKGQVLSAPSKSAMENVASPLPKPPQTITRSFSIP 586
           PRPP      S R  GLVGHS PLLPKG +     K+   NVAS LP P Q +TRSFSIP
Sbjct: 519 PRPPLSSTSKSPRAEGLVGHSTPLLPKGSMHPGTRKTPASNVASQLPTPSQVVTRSFSIP 578

Query: 587 SSSHEMETAHNL----EMASPPLTPISLTTKNPSSAVSEPVVQTVEIRG 631
           S S  +  A +     ++ASPPLTPISL    PSS  S  V QTV+IRG
Sbjct: 579 SRSRRIMVAQSSGIAEDVASPPLTPISLCNNYPSSTGSHTVNQTVQIRG 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449445582\|ref\|XP_004140551.1\| PREDICTED: uncharacterized protein At2g33490-like [Cucumis sativus] gi\|449528537\|ref\|XP_004171260.1\| PREDICTED: uncharacterized protein At2g33490-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255543142\|ref\|XP_002512634.1\| conserved hypothetical protein [Ricinus communis] gi\|223548595\|gb\|EEF50086.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|296088724\|emb\|CBI38174.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356569127\|ref\|XP_003552757.1\| PREDICTED: uncharacterized protein At2g33490-like [Glycine max]	Back alignment and taxonomy information

>gi\|225425164\|ref\|XP_002263726.1\| PREDICTED: uncharacterized protein At2g33490-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224075509\|ref\|XP_002304659.1\| predicted protein [Populus trichocarpa] gi\|222842091\|gb\|EEE79638.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357501351\|ref\|XP_003620964.1\| hypothetical protein MTR_7g005390 [Medicago truncatula] gi\|355495979\|gb\|AES77182.1\| hypothetical protein MTR_7g005390 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|30685727\|ref\|NP_180907.2\| hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana] gi\|166227727\|sp\|O22799.2\|Y2349_ARATH RecName: Full=Uncharacterized protein At2g33490 gi\|330253748\|gb\|AEC08842.1\| hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297823145\|ref\|XP_002879455.1\| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata] gi\|297325294\|gb\|EFH55714.1\| hydroxyproline-rich glycoprotein family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		633
TAIR\|locus:2051058		623	AT2G33490 "AT2G33490" [Arabido	0.938	0.953	0.529	1.8e-142
TAIR\|locus:2088389		614	AT3G26910 "AT3G26910" [Arabido	0.658	0.679	0.422	1.8e-99
TAIR\|locus:2163061		586	AT5G41100 "AT5G41100" [Arabido	0.617	0.667	0.458	7.8e-95

TAIR\|locus:2051058 AT2G33490 "AT2G33490" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
 Identities = 333/629 (52%), Positives = 394/629 (62%)

Query:     1 MKTSLRRWRGFTLHKHGDSKDRRDLRPLAQLDELAQASQDMQDMRGCYDXXXXXXXXXXX 60
             MKTSLRR RG  LHKH +SKDRRDLR L Q DELAQASQD++DMR CYD           
Sbjct:     1 MKTSLRRLRG-VLHKH-ESKDRRDLRALVQKDELAQASQDVEDMRDCYDSLLNAAAATAN 58

Query:    61 XXYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIP 120
               YEFSESL+ELGACLLEKTALND+EESG+VL+MLGK+QFELQKLVD YRSHIFQTITIP
Sbjct:    59 SAYEFSESLRELGACLLEKTALNDDEESGRVLIMLGKLQFELQKLVDKYRSHIFQTITIP 118

Query:   121 SESLLNELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQ 180
             SESLLNEL+ VEEM+R CDEKRNV E ML RQREKGRSK GKGETFS QQLQEAHD+Y+ 
Sbjct:   119 SESLLNELRIVEEMQRLCDEKRNVYEGMLTRQREKGRSKGGKGETFSPQQLQEAHDDYEN 178

Query:   181 EATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDY 240
             E TLFVFRLKSLKQGQ+RSLLTQAARHHAAQL F KKAL SLE VDPHV+MV E QHIDY
Sbjct:   179 ETTLFVFRLKSLKQGQTRSLLTQAARHHAAQLCFFKKALSSLEEVDPHVQMVTESQHIDY 238

Query:   241 QFRGLEXXXXXXXXXXXXXXXXXXXX--ELSFDYRQNEQEQDAVSSSRKSMELDQPDITF 298
              F GLE                      ELSF+YR N+++QDA SS+  S EL   DITF
Sbjct:   239 HFSGLEDDDGDDEIENNENDGSEVHDDGELSFEYRVNDKDQDADSSAGGSSELGNSDITF 298

Query:   299 SQVARLETSKETLDRNYRKSLSFSREVRFSSQSAPLFMDNKSDL-DDRRKQMRQSSTRKF 357
              Q+    T++E  + NYRKS SF R+VR  SQSAPLF +N++    ++  +MR + TRKF
Sbjct:   299 PQIGGPYTAQENEEGNYRKSHSFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKF 358

Query:   358 NTYVLPTPGDTKXXXXXXXX--XXXXXALRPSLGGQTYNLRHESPLDMLKFDKSLGGDKT 415
             NTY LPTP +T                +  P+    T  + + SPL+     K     ++
Sbjct:   359 NTYALPTPVETTRSPSSTTSPGHKNVGSSNPTKA-ITKQIWYSSPLETRGPAKV--SSRS 415

Query:   416 SKDTAQSILRESNNNTASIRLPPPPPADGFLLSRLDPRGASVPKKVKRQSFSGPLTG-PR 474
                  + +LRESN NT+  RLPPP  ADG L SRL   G      +KR+SFSGPLT  P 
Sbjct:   416 MVALKEQVLRESNKNTS--RLPPPL-ADGLLFSRL---GT-----LKRRSFSGPLTSKPL 464

Query:   475 PAKPVLKEHQQLLSGPLLRNXXXXXXXXXXXXXXXXXXXXXXXXXISELHELPRPPGRLN 534
             P KP L     L SGP+ RN                         ISELHELPRPP R +
Sbjct:   465 PNKP-LSTTSHLYSGPIPRNPVSKLPKVSSSPTASPTFVSTPK--ISELHELPRPPPRSS 521

Query:   535 LNSARPMGLVGHSAPLLPKGQVLSAP--SKSAMENVASP-LPKP---PQTITRSFSIPSS 588
               S+R +G   +SAPL+ + Q+LS P  + SA      P + +    P +  R+  +  S
Sbjct:   522 TKSSRELG---YSAPLVSRSQLLSKPLITNSASPLPIPPAITRSFSIPTSNLRASDLDMS 578

Query:   589 SHEMETAHNLEMASPPLTPISLTTKNPSS 617
                + T   L   SPPLTP+SL    P +
Sbjct:   579 KTSLGTK-KLGTPSPPLTPMSLIHPPPQA 606

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2088389 AT3G26910 "AT3G26910" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163061 AT5G41100 "AT5G41100" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22799	Y2349_ARATH	No assigned EC number	0.5918	0.9036	0.9181	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		633
cd07307		194	cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain	1e-24

>gnl\|CDD\|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature	Back alignment and domain information

 Score =  100 bits (252), Expect = 1e-24
 Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 19/201 (9%)

Query: 40  DMQDMRGCYDSLLSAAAATANS-------AYEFSESLQELGACLLEKTALNDNEESGKVL 92
            + ++      L+       +S       A + SE+LQELG  L + +    N + G+ L
Sbjct: 1   KLDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLS----NTDLGEAL 56

Query: 93  LMLGKVQFELQKLVDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMR 151
              GK+Q EL++  D     +   +  P +  L  +L+ +++ +++ D+ R   +    +
Sbjct: 57  EKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREK 116

Query: 152 QREKGRS-KNGKGETFSLQQLQEAHDEYDQEATLFVFRLKSLKQGQ---SRSLLTQAARH 207
            ++  +  K+      + ++LQEA ++Y++     +  L  L++ +     SLL      
Sbjct: 117 LKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEA 176

Query: 208 HAAQLSFVKKALKSLEAVDPH 228
              Q  F K+ LK LE + P+
Sbjct: 177 ---QSEFFKEVLKILEQLLPY 194

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-BAR domain and is present in Pombe/Cdc15 homology (PCH) family proteins, which include Fes/Fes tyrosine kinases, PACSIN or syndapin, CIP4-like proteins, and srGAPs, among others. The Inverse (I)-BAR or IRSp53/MIM homology Domain (IMD) is found in multi-domain proteins, such as IRSp53 and MIM, that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The I-BAR domain induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. BAR domains that also serve as protein interaction domains include those of arfaptin and OPHN1-like proteins, among others, which bind to Rac and Rho GAP domains, respectively. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		633
cd07642		215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07640		213	BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07604		215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07641		215	BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07603		200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.92
cd07634		207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	99.9
cd07639		200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.89
cd07606		202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	99.87
cd07601		215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	99.86
cd07307		194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.84
KOG0521		785	consensus Putative GTPase activating proteins (GAP	99.81
cd07637		200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	99.74
PF03114		229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	99.7
cd07635		207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.58
cd07638		200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.55
cd07602		207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	99.55
cd07636		207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	99.39
smart00721		239	BAR BAR domain.	99.39
cd07631		215	BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.37
cd07633		207	BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.28
cd07593		215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	99.13
cd07595		244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	99.11
cd07632		215	BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.11
cd07592		223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	99.11
cd07594		229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	98.99
KOG1118		366	consensus Lysophosphatidic acid acyltransferase en	98.87
cd07620		257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.82
cd07600		242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	98.82
cd07615		223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	98.8
cd07616		229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	98.8
cd07614		223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	98.77
cd07613		223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	98.76
cd07618		246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.75
cd07619		248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.68
PF08397		219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	98.65
cd07617		220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	98.62
cd07596		218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	98.43
cd07590		225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	98.32
PF09325		236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	98.27
cd07627		216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	98.03
cd07591		224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	97.9
PF06456		229	Arfaptin: Arfaptin-like domain; InterPro: IPR01050	97.9
cd07623		224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	97.85
cd07624		200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	97.73
cd07599		216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	97.73
cd07659		215	BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of	97.58
PF10455		289	BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr	97.53
KOG3771		460	consensus Amphiphysin [Intracellular trafficking,	97.43
cd07630		198	BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain	97.41
cd07588		211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	97.37
cd07609		214	BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domai	97.37
cd07605		223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	97.36
cd07628		185	BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of	97.28
cd07660		201	BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain	97.28
cd07643		231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	97.22
cd00011		203	BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do	97.18
cd07598		211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	97.13
cd07589		195	BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of	97.11
cd07612		211	BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B	96.97
cd07621		219	BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of	96.9
cd07664		234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.81
cd07611		211	BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR)	96.76
cd07608		192	BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) dom	96.75
KOG2273		503	consensus Membrane coat complex Retromer, subunit	96.66
cd07625		230	BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of	96.56
cd07610		191	FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or	96.36
cd07645		226	I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as	96.18
KOG1451		812	consensus Oligophrenin-1 and related Rho GTPase-ac	96.13
cd07665		234	BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S	96.02
cd07629		187	BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of	95.92
cd07622		201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.66
cd07666		243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.61
cd07662		218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.58
PF13805		271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	95.56
cd07667		240	BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of	95.53
cd07650		228	F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and	95.49
cd07663		218	BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S	95.28
smart00721		239	BAR BAR domain.	95.27
cd07684		253	F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/	95.06
PF03114		229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	94.79
cd07683		253	F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/	94.76
cd07644		215	I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as	94.59
cd07653		251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	94.32
PF12729		181	4HB_MCP_1: Four helix bundle sensory module for si	93.67
cd07657		237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	93.55
cd07646		232	I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th	93.33
cd07648		261	F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am	93.3
cd07307		194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	93.25
cd07597		246	BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S	93.24
cd07649		233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	92.83
KOG3725		375	consensus SH3 domain protein SH3GLB [Signal transd	92.05
cd07674		261	F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A	91.41
cd07653		251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	90.87
KOG3876		341	consensus Arfaptin and related proteins [Signal tr	90.82
PHA02562		562	46 endonuclease subunit; Provisional	90.44
cd07651		236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	90.32
cd07656		241	F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/A	88.94
cd07626		199	BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain	87.6
PF15011		168	CK2S: Casein Kinase 2 substrate	86.85
cd07686		234	F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp	86.77
cd07658		239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	86.76
cd07678		263	F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/	86.43
cd07676		253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	85.31
PF07361		103	Cytochrom_B562: Cytochrome b562; InterPro: IPR0091	84.45
cd07655		258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	83.88
cd07598		211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	83.8
PF05816		333	TelA: Toxic anion resistance protein (TelA); Inter	83.29
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	82.92
cd07647		239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	82.19
PF11985		180	DUF3486: Protein of unknown function (DUF3486); In	82.04
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	80.82
PF05791		184	Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL	80.79

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2	Back alignment and domain information

Probab=100.00  E-value=5e-57  Score=440.23  Aligned_cols=200  Identities=18%  Similarity=0.375  Sum_probs=192.2

Q ss_pred             chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh-hhhhhcccCCchhhhHHHHHHHhHHHHHHH
Q 006738           27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGA-CLLEKTALNDNEESGKVLLMLGKVQFELQK  104 (633)
Q Consensus        27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGs-cll~kta~~dd~e~g~v~l~lgk~q~EL~k  104 (633)
                      .+.+|||.++.+|. |++|||.+++|+++|.+|+++...|+++|++||+ ||     ++||+++|++|+|||++++||++
T Consensus         3 ~~~~~ee~l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l-----~~dd~~~~~~l~kf~~~~~El~~   77 (215)
T cd07642           3 TVVAIEEALDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCV-----CRDDPDLGSAFLKFSVFTKELTA   77 (215)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCcHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999 9999999999999999999999999999999999 66     67899999999999999999999


Q ss_pred             HHHHHHHHhhhhccCCcHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCCCcccc---------HHHHHH
Q 006738          105 LVDAYRSHIFQTITIPSESLLN-ELQTVE-EMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETFS---------LQQLQE  173 (633)
Q Consensus       105 L~d~yr~nI~~tIt~PsESLLk-eLk~Ve-emKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~i---------~eqle~  173 (633)
                      |+++|++||+|||++|++|||| |||+|+ |||||||++|++||+|+. ++||+++|++|++++|         .++|++
T Consensus        78 l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~-k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~  156 (215)
T cd07642          78 LFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVT-KIEKEKKEHAKMHGMIRTEISGAEIAEEMEK  156 (215)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccccchhccchhhHHHHHHH
Confidence            9999999999999999999999 999997 999999999999999998 9999999999999998         489999


Q ss_pred             HHHhhHhhHhHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHH
Q 006738          174 AHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSLEAVDPHVKMV  232 (633)
Q Consensus       174 ~r~~fqEeaqmc~frLKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE~lephVk~l  232 (633)
                      +|+.||.++..|+|+|++||+||+++|||++++|||||++||++|||+||+|+|||++|
T Consensus       157 ~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~l  215 (215)
T cd07642         157 ERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEKL  215 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999977777777778999999999999999999999999999999999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3	Back alignment and domain information

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins	Back alignment and domain information

>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1	Back alignment and domain information

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins	Back alignment and domain information

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like	Back alignment and domain information

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1	Back alignment and domain information

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)	Back alignment and domain information

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins	Back alignment and domain information

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature	Back alignment and domain information

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]	Back alignment and domain information

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3	Back alignment and domain information

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Back alignment and domain information

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2	Back alignment and domain information

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2	Back alignment and domain information

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins	Back alignment and domain information

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase	Back alignment and domain information

>smart00721 BAR BAR domain	Back alignment and domain information

>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1	Back alignment and domain information

>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1	Back alignment and domain information

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins	Back alignment and domain information

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins	Back alignment and domain information

>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2	Back alignment and domain information

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A	Back alignment and domain information

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B	Back alignment and domain information

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1	Back alignment and domain information

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins	Back alignment and domain information

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3	Back alignment and domain information

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1	Back alignment and domain information

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2	Back alignment and domain information

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1	Back alignment and domain information

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1	Back alignment and domain information

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2	Back alignment and domain information

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family	Back alignment and domain information

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2	Back alignment and domain information

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins	Back alignment and domain information

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3	Back alignment and domain information

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking	Back alignment and domain information

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p	Back alignment and domain information

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins	Back alignment and domain information

>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules	Back alignment and domain information

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2	Back alignment and domain information

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30	Back alignment and domain information

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins	Back alignment and domain information

>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1	Back alignment and domain information

>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Back alignment and domain information

>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins	Back alignment and domain information

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins	Back alignment and domain information

>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3	Back alignment and domain information

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes	Back alignment and domain information

>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p	Back alignment and domain information

>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin	Back alignment and domain information

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis	Back alignment and domain information

>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes	Back alignment and domain information

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)	Back alignment and domain information

>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein	Back alignment and domain information

>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2	Back alignment and domain information

>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6	Back alignment and domain information

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2	Back alignment and domain information

>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II	Back alignment and domain information

>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins	Back alignment and domain information

>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p	Back alignment and domain information

>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes	Back alignment and domain information

>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1	Back alignment and domain information

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]	Back alignment and domain information

>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1	Back alignment and domain information

>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p	Back alignment and domain information

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4	Back alignment and domain information

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7	Back alignment and domain information

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6	Back alignment and domain information

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B	Back alignment and domain information

>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30	Back alignment and domain information

>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein	Back alignment and domain information

>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5	Back alignment and domain information

>smart00721 BAR BAR domain	Back alignment and domain information

>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3	Back alignment and domain information

Back alignment and domain information

>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1	Back alignment and domain information

>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2	Back alignment and domain information

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins	Back alignment and domain information

>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain	Back alignment and domain information

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	Back alignment and domain information

>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53	Back alignment and domain information

>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins	Back alignment and domain information

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature	Back alignment and domain information

>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8	Back alignment and domain information

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7	Back alignment and domain information

>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]	Back alignment and domain information

>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein	Back alignment and domain information

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins	Back alignment and domain information

>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins	Back alignment and domain information

>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins	Back alignment and domain information

>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins	Back alignment and domain information

>PF15011 CK2S: Casein Kinase 2 substrate	Back alignment and domain information

>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase	Back alignment and domain information

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)	Back alignment and domain information

>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1)	Back alignment and domain information

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17	Back alignment and domain information

>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli	Back alignment and domain information

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins	Back alignment and domain information

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)	Back alignment and domain information

>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins	Back alignment and domain information

>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		633
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1i4d_A		224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	3e-06
2fic_A		251	Bridging integrator 1; BAR domain, homodimer, coil	8e-06
1uru_A		244	Amphiphysin; endocytosis, coiled-coil, membrane cu	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 69/503 (13%), Positives = 152/503 (30%), Gaps = 129/503 (25%)

Query: 18  DSKDRRD-LRPL---AQLDELAQASQDMQDMRGCYDSLLSAAAATANSAYEF-SESLQEL 72
           D KD +D  + +    ++D +  +   +      + +LLS          +F  E L+  
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRIN 90

Query: 73  GACLLEKTALNDNEESGKVLLMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQT-V 131
              L+        + S           +  Q+      + +F    +       +L+  +
Sbjct: 91  YKFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 132 EEMKRQCDEKRNVCEY-MLMRQREKGRSKNGKGETFSLQQLQEAHDEYDQEATLFVFRLK 190
            E++      +NV    +L           G G+T  +    +    Y  +     F++ 
Sbjct: 145 LELRPA----KNVLIDGVL-----------GSGKT-WV--ALDVCLSYKVQ-CKMDFKIF 185

Query: 191 SLKQGQSRS----------LLTQAARHHAAQLSFVKKALKSLEAVDPHVKMVAEQQHIDY 240
            L      S          LL Q   +  ++          + ++   ++ + + +   Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PY 243

Query: 241 QFRGLED-DDMDDGDDDDNGSDSRGDGELSFDYR-------QNEQEQDAVSSS-RKSMEL 291
           +   L    ++ +    +           +F+         + +Q  D +S++    + L
Sbjct: 244 E-NCLLVLLNVQNAKAWN-----------AFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 292 DQPDITFSQVARLETSKETLDRNYRKSLSFS-----REVRFSSQSAPL----FMDNKSDL 342
           D   +T        T  E       K L        REV     + P       ++  D 
Sbjct: 292 DHHSMTL-------TPDEVKSL-LLKYLDCRPQDLPREVL---TTNPRRLSIIAESIRDG 340

Query: 343 DDRRKQMRQSSTRKFNTYV------LPTPGDTKSSHS-----PGPGSPVPSALRPSLGGQ 391
                  +  +  K  T +      L  P + +         P P + +P+ L   +   
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFP-PSAHIPTILLSLIWF- 397

Query: 392 TYNLRHESPLDMLK--FDKSLGGDKTSKDTAQSI------LRESNNNTASI--------R 435
             ++     + ++      SL  +K  K++  SI      L+    N  ++         
Sbjct: 398 --DVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 436 LP--------PPPPADGFLLSRL 450
           +P         PP  D +  S +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHI 477

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* Length = 224	Back alignment and structure

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Length = 251	Back alignment and structure

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Length = 244	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		633
2q12_A		265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	99.87
2q13_A		385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.83
4h8s_A		407	DCC-interacting protein 13-beta; BAR domain, pleck	99.75
2z0v_A		240	SH3-containing GRB2-like protein 3; helix bundle,	99.51
1zww_A		256	SH3-containing GRB2-like protein 2; coiled coil, t	99.47
1uru_A		244	Amphiphysin; endocytosis, coiled-coil, membrane cu	99.04
2fic_A		251	Bridging integrator 1; BAR domain, homodimer, coil	99.02
4avm_A		237	Bridging integrator 2; protein binding, plasma mem	98.36
4a3a_A		243	Amphiphysin; structural genomics, invagination, kn	97.87
1i4d_A		224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	97.69
2ykt_A		253	Brain-specific angiogenesis inhibitor 1-associate	97.69
3dyt_A		366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	97.63
2d1l_A		253	Metastasis suppressor protein 1; IRSP53, actin bin	97.57
4akv_A		386	Sorting nexin-33; transport protein, organelle bio	97.25
3ok8_A		222	Brain-specific angiogenesis inhibitor 1-associate	96.84
3abh_A		312	Pacsin2, protein kinase C and casein kinase substr	96.07
2efk_A		301	CDC42-interacting protein 4; EFC domain, structura	95.98
2efl_A		305	Formin-binding protein 1; EFC domain, structural g	95.84
3i2w_A		290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	95.61
3plt_A		234	Sphingolipid long chain base-responsive protein L;	95.53
4dyl_A		406	Tyrosine-protein kinase FES/FPS; structural genomi	95.27
2v0o_A		276	FCHO2, FCH domain only protein 2; lipid-binding pr	95.13
2x3v_A		337	Syndapin I, protein kinase C and casein kinase sub	94.97
3haj_A		486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	94.8
3aco_A		350	Pacsin2, protein kinase C and casein kinase substr	94.58
3m3w_A		320	Pacsin3, protein kinase C and casein kinase II sub	91.5
3g9g_A		287	Suppressor of yeast profilin deletion; SYP1, BAR d	86.15
2x3v_A		337	Syndapin I, protein kinase C and casein kinase sub	83.99
3aco_A		350	Pacsin2, protein kinase C and casein kinase substr	82.4

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A	Back alignment and structure

Probab=99.87  E-value=7e-21  Score=183.99  Aligned_cols=206  Identities=15%  Similarity=0.177  Sum_probs=177.1

Q ss_pred             chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738           27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL  105 (633)
Q Consensus        27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL  105 (633)
                      -+..+|+-++..+. |.++-+.++.|+.++.++......|+++|.+++...+.  ...+|+.++.+|..||++.+||...
T Consensus        22 ~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~--~~~~d~~~~~~L~~f~~~l~ei~~~   99 (265)
T 2q12_A           22 LLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFP--LGGDDEVMSSTLQQFSKVIDELSSC   99 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888 99999999999999999999999999999999874321  1346788999999999999999999


Q ss_pred             HHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCccc---cHHHHHHHHHhhHhh
Q 006738          106 VDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKNGKGETF---SLQQLQEAHDEYDQE  181 (633)
Q Consensus       106 ~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~~K~e~~---i~eqle~~r~~fqEe  181 (633)
                      ...+..++.++|..|++.+++ ||+.++|.||.||+.|++|+..++++..-.|+|  +.|..   ...+|..+|+.|+  
T Consensus       100 ~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k--~~e~~l~Ea~~~l~~~Rk~f~--  175 (265)
T 2q12_A          100 HAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--ENDKVKYEVTEDVYTSRKKQH--  175 (265)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cchhhHHHHHHHHHHHHHHHH--
Confidence            999999999999999999999 999999999999999999998887544333333  22222   3489999999999  


Q ss_pred             HhHHHHHHh--hhccCCchhHHHHHHHHHHHHHHHHHHHhhhhh-ccchHHHHHHhhhhc
Q 006738          182 ATLFVFRLK--SLKQGQSRSLLTQAARHHAAQLSFVKKALKSLE-AVDPHVKMVAEQQHI  238 (633)
Q Consensus       182 aqmc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsLE-~lephVk~lae~~hi  238 (633)
                      .++|.|-++  .|+.++..++|..+..|.+||.+||+.|...+. .++|+++.|..+++.
T Consensus       176 ~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~  235 (265)
T 2q12_A          176 QTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQN  235 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999877  899999999999999999999999999999984 999999999887653

PyMOL of 2q12

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A	Back alignment and structure

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}	Back alignment and structure

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}	Back alignment and structure

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A	Back alignment and structure

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1	Back alignment and structure

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A	Back alignment and structure

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}	Back alignment and structure

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*	Back alignment and structure

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A	Back alignment and structure

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*	Back alignment and structure

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}	Back alignment and structure

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}	Back alignment and structure

>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}	Back alignment and structure

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A	Back alignment and structure

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4	Back alignment and structure

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4	Back alignment and structure

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}	Back alignment and structure

>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}	Back alignment and structure

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}	Back alignment and structure

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A	Back alignment and structure

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}	Back alignment and structure

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}	Back alignment and structure

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A	Back alignment and structure

>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A	Back alignment and structure

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		633
d1i4da_		200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	2e-21
d1urua_		217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	8e-14
d1y2oa1		248	a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain	2e-04

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200	Back information, alignment and structure


class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (223), Expect = 2e-21
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 6/195 (3%)

Query: 33  ELAQASQDMQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVL 92
           EL    + +++ +  Y+S+L    A     Y   ++   LG    + +    + E  +  
Sbjct: 7   ELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQ--KSPELQEEF 64

Query: 93  LMLGKVQFELQKLVDAYRSHIFQTITIPSESLLNELQTVEEMKRQCDEKRNVCEYMLMRQ 152
               + Q  L K  +     +   ++  +  +   ++      +Q +  R   +      
Sbjct: 65  GYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDL 124

Query: 153 REKGRSKNGKGETFSL----QQLQEAHDEYDQEATLFVFRLKSLKQGQSRSLLTQAARHH 208
            E        G    L       Q   D+Y++       +LK L++ + + +  Q    H
Sbjct: 125 EELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFH 184

Query: 209 AAQLSFVKKALKSLE 223
            A  ++     K LE
Sbjct: 185 NAVSAYFAGNQKQLE 199

PyMOL of d1i4da_

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217	Back information, alignment and structure

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 248	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		633
d2elba1		268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.87
d1i4da_		200	Arfaptin, Rac-binding fragment {Human (Homo sapien	99.73
d1urua_		217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	99.65
d2d4ca1		237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1y2oa1		248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	99.61
d1i4da_		200	Arfaptin, Rac-binding fragment {Human (Homo sapien	96.96
d2efla1		288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	96.91
d1urua_		217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	96.84
d2efka1		279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	96.7
d2d4ca1		237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	92.68
d1y2oa1		248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	90.86
d2elba1		268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	83.12

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=184.65  Aligned_cols=206  Identities=17%  Similarity=0.182  Sum_probs=172.5

Q ss_pred             chhhHHHHHHHhHh-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhcccCCchhhhHHHHHHHhHHHHHHHH
Q 006738           27 PLAQLDELAQASQD-MQDMRGCYDSLLSAAAATANSAYEFSESLQELGACLLEKTALNDNEESGKVLLMLGKVQFELQKL  105 (633)
Q Consensus        27 p~a~ldEl~~a~qd-m~~Mk~~ydsllsaaaa~~ns~yefsEaleemGscll~kta~~dd~e~g~v~l~lgk~q~EL~kL  105 (633)
                      -+..+|+-++...+ |++|.+++++++.++.++......|+++|.+++.....  ...||+.+|.+|..||.+.+||...
T Consensus        17 ~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L~~~~~~~~~--~~~dd~~~~~~l~~f~~~~~el~~~   94 (268)
T d2elba1          17 LLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFP--LGGDDEVMSSTLQQFSKVIDELSSC   94 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--ccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888888 99999999999999999999999999999999876542  2447888999999999999999999


Q ss_pred             HHHHHHHhhhhccCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-CCCccccHHHHHHHHHhhHhhHh
Q 006738          106 VDAYRSHIFQTITIPSESLLN-ELQTVEEMKRQCDEKRNVCEYMLMRQREKGRSKN-GKGETFSLQQLQEAHDEYDQEAT  183 (633)
Q Consensus       106 ~d~yr~nI~~tIt~PsESLLk-eLk~VeemKkqcDekr~~YE~m~~~~~EKgr~k~-~K~e~~i~eqle~~r~~fqEeaq  183 (633)
                      .+.+..++..+|..|++++++ +|+.|+++||.||+.|++|+..+..+....|.|. .+...=..++|..+|+.|+  .+
T Consensus        95 ~~~l~~~~~~~~~~pL~~f~~~di~~~ke~kk~fek~~~~yd~~l~k~~~~~k~k~~~~~~~Ea~~~l~~~r~~f~--~~  172 (268)
T d2elba1          95 HAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQH--QT  172 (268)
T ss_dssp             HHHHHHHHHHHTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-----HHHHHHHHHHHHHHHHH--HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchhhhhHHHHHHHHHHHHH--HH
Confidence            999999999999999999999 9999999999999999999999985443332221 1111112478999999999  77


Q ss_pred             HHHHH--HhhhccCCchhHHHHHHHHHHHHHHHHHHHhhhh-hccchHHHHHHhhh
Q 006738          184 LFVFR--LKSLKQGQSRSLLTQAARHHAAQLSFVKKALKSL-EAVDPHVKMVAEQQ  236 (633)
Q Consensus       184 mc~fr--LKsLKqgq~rsLLtqaaRhhaAQl~fF~~GLKsL-E~lephVk~lae~~  236 (633)
                      .|.|.  |..|..++...+|..++.+++||++||++|+..| +.++|+++.|.+..
T Consensus       173 ~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~l~~~l~~~~~~l~~~~  228 (268)
T d2elba1         173 MMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSV  228 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776  5599999999999999999999999999999987 78999998887643

PyMOL of d2elba1

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure